Citrus Sinensis ID: 023142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccEEEcccccccHHcccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHHHcccccccccEEccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccEEEcccccEEEEcccccccccccHHHHcccccEEEcccccccEEccccccccccEEEcccccccEEcccHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccHHHHcccHHHHHHHHcccccEEccEEccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIEnlgatedqfdtidlsdneivklenmphlnrlgtliinnnritrinpnigeflPKLHTLVLTNNRLVnlveidpltslpklqflslldnsitkkpnyrlYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMktlmpvevpnvseeeeqqtpkvvaptpEQIIAIKAAIVNSQTLEEVARLEKVLKsgqlpadlkipdydsgskdvkendekmvpdveneadvepnnvenqknDELAAMEQD
Flexible Loop (DISEMBL)
mvrltadliwksphffNAIKERELDLRGNKIAVIEnlgatedqfdtiDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPltslpklqfLSLLDNsitkkpnyrlyvihklkslrvldfkkvknKERMEaaslfaseemeEEAKKESMKTLMPVEVPnvseeeeqqtpkvvaptpEQIIAIKAAIVNSQTLEEVARLEKVlksgqlpadlkipdydsgskdvkendeKMVPDveneadvepnnvenqkndelaameqd
Low Complexity Region (SEG)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHlnrlgtliinnnritrinpnigEFLPKlhtlvltnnrlvnlvEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERmeaaslfaseemeeeakkesmkTLMpvevpnvseeeeQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Disordered region (IsUnstruct)
***LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL***********************************************************QIIAIKAAIVNSQTLEEVARLEKV**********************************************************
Disordered Region (DISOPRED)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAA*******************************************************************************************************************************
Disordered Region (DISEMBL)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF**************KTLMPVEV***************APTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Disordered Region (DISPRO)
**RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES*K***********************PTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
P43333	249	U2 small nuclear ribonucl	yes	no	0.828	0.951	0.810	1e-107
Q4R8Y8	255	U2 small nuclear ribonucl	N/A	no	0.797	0.894	0.510	5e-57
P09661	255	U2 small nuclear ribonucl	yes	no	0.797	0.894	0.510	5e-57
P57784	255	U2 small nuclear ribonucl	yes	no	0.797	0.894	0.506	4e-56
Q9V4Q8	265	Probable U2 small nuclear	yes	no	0.821	0.886	0.436	7e-49
Q9BLB6	253	Probable U2 small nuclear	yes	no	0.807	0.913	0.443	2e-48
Q9USX8	239	U2 small nuclear ribonucl	yes	no	0.818	0.979	0.403	3e-41
Q4WV66	253	U2 small nuclear ribonucl	yes	no	0.853	0.964	0.398	2e-40
Q4P5F9	246	U2 small nuclear ribonucl	N/A	no	0.811	0.943	0.390	9e-36
Q7S9P4	252	U2 small nuclear ribonucl	N/A	no	0.849	0.964	0.364	8e-31

>sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/243 (81%), Positives = 216/243 (88%), Gaps = 6/243 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL+INNNRITRINPN+GEFLPKLH+LVLTNNRLVNLVEIDPL S+PKLQ+LSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKK NYRLYVIHKLKSLRVLDF K+K KER EAASLF+S+E EEE KK S +   
Sbjct: 121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSRE--- 177

Query: 181 PVEVPNVSEEEEQ-QTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
             EV  VSE  E  +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L 
Sbjct: 178 --EVKKVSETAENPETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLI 235

Query: 240 IPD 242
           IPD
Sbjct: 236 IPD 238

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4R8Y8|RU2A_MACFA U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis GN=SNRPA1 PE=2 SV=1

 Score =  221 bits (563), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 157/239 (65%), Gaps = 11/239 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK--KESMKT 178
           L N +T K +YRLYVI+K+  +RVLDF+KVK KER EA  +F  +   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 179 LMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 236
             P   +P           K   P+P  + AIK AI N+ TL EV RL+ +L+SGQ+P 
Sbjct: 181 FNPGAGLPT--------DKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Macaca fascicularis (taxid: 9541)

>sp|P09661|RU2A_HUMAN U2 small nuclear ribonucleoprotein A' OS=Homo sapiens GN=SNRPA1 PE=1 SV=2

 Score =  221 bits (563), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 122/239 (51%), Positives = 157/239 (65%), Gaps = 11/239 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK--KESMKT 178
           L N +T K +YRLYVI+K+  +RVLDF+KVK KER EA  +F  +   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 179 LMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 236
             P   +P           K   P+P  + AIK AI N+ TL EV RL+ +L+SGQ+P 
Sbjct: 181 FNPGAGLPT--------DKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Homo sapiens (taxid: 9606)

>sp|P57784|RU2A_MOUSE U2 small nuclear ribonucleoprotein A' OS=Mus musculus GN=Snrpa1 PE=1 SV=2

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/239 (50%), Positives = 156/239 (65%), Gaps = 11/239 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +LS+
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK--KESMKT 178
           L N +T K +YRLYVI+K+  +RVLDF+KVK KER EA  +F  +   + AK      KT
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT 180

Query: 179 LMP-VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 236
             P   +P           K   P+   + AIK AI N+ TL EV RL+ +L+SGQ+P 
Sbjct: 181 FNPGAGLPT--------DKKKGGPSAGDVEAIKNAIANASTLAEVERLKGLLQSGQIPG 231

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Mus musculus (taxid: 10090)

>sp|Q9V4Q8|RU2A_DROME Probable U2 small nuclear ribonucleoprotein A' OS=Drosophila melanogaster GN=U2A PE=2 SV=1

 Score =  194 bits (493), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 152/238 (63%), Gaps = 3/238 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LT +LI +S  + N  +ERELDLRG KI  IENLGAT DQFDTIDLSDN++ KL+N+
Sbjct: 1   MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLSDNDLRKLDNL 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           PHL RL  L++NNNRI RI+  + E +P L +++LT N L  L +++PL    KL+ + L
Sbjct: 61  PHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNLQELSDLEPLVGFTKLETICL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           L N ++ KPNYR Y+ +K   LR+LDF+K+K K+R  A   F +++ ++  K+ S K+ M
Sbjct: 121 LINPVSTKPNYREYMAYKFPQLRLLDFRKIKQKDRQAAQEFFRTKQGKDVLKEISRKSKM 180

Query: 181 P---VEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235
                        + + +       P+ +  I+ AI  + +L EV RL ++L+SGQLP
Sbjct: 181 SAAAAIAAEAGNGKGRGSEGGRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLP 238

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Drosophila melanogaster (taxid: 7227)

>sp|Q9BLB6|RU2A_CAEEL Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans GN=sap-1 PE=1 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 6/237 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N 
Sbjct: 1   MVRLTTELFAERPQFVNSVNMREINLRGQKIPVIENMGVTRDQFDVIDLTDNDIRKLDNF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P  +RL TL ++NNRI  I P+I   LP L TL LTNN +  L +I+PL    KL++++ 
Sbjct: 61  PTFSRLNTLYLHNNRINYIAPDIATKLPNLKTLALTNNNICELGDIEPLAECKKLEYVTF 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF--ASEEMEEEAKKESMKT 178
           + N IT K NYR+Y+I+KL ++RV+DF +V+  ER  A  +F   S +   +A ++S+ T
Sbjct: 121 IGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHT 180

Query: 179 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235
             P E+    E  E  +      T E    IK AI N+++L EV  L+ +L SG++P
Sbjct: 181 EDPSEI----EPNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233

This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9USX8|RU2A_SCHPO U2 small nuclear ribonucleoprotein A' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lea1 PE=1 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 138/238 (57%), Gaps = 4/238 (1%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           +RL A+ + + P F + +KE ELDLR  +I +IENLG   D  D ID +DN+I  L N P
Sbjct: 1   MRLNAEFLSQVPSFISPLKETELDLRWYQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFP 60

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
            + RL TL+  NNRIT I P+IG+ LP L TL L  N L  + ++DPL S P+L  LS +
Sbjct: 61  RMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQLTNLSCI 120

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM--KTL 179
           DN + +K  YRLY+I ++ SL +LDF++V+  ER+ A  +F   +   E     M  K+ 
Sbjct: 121 DNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMGVKSR 180

Query: 180 MPVEVPNVSEEEEQQTPKVVAP--TPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235
           +      V    E  +P       TPE+   IK AI N+ ++ E+ RLE +L  G++P
Sbjct: 181 VFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNASSIAEINRLEAMLLEGKIP 238

Involved in pre-mRNA splicing. This protein is associated with sn-RNP U2. It helps the A' protein to bind stem loop IV of U2 snRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4WV66|RU2A_ASPFU U2 small nuclear ribonucleoprotein A' OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=lea1 PE=3 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 148/256 (57%), Gaps = 12/256 (4%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           +RLT +LI  S  + N +K+RELDLRG+KI  IENLG  +DQ D ID +DN+I  L N P
Sbjct: 1   MRLTVELIQNSLSYINPLKDRELDLRGHKIPTIENLGIAKDQ-DAIDFTDNDISSLGNFP 59

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
              RL TL++  NR+  I P I   +P L TLVLT N +  L ++DPL +L +L  L LL
Sbjct: 60  FFPRLHTLLLARNRVKHIQPTIASTIPNLTTLVLTANNMAELADLDPLRNLTRLTHLVLL 119

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS-EEMEEEAKKESMKTLM 180
           +N +T+K +YR +VI ++ S+R LD++KVK+ ER +A  LF + EE    A K       
Sbjct: 120 ENPVTRKEHYRYWVIWRIPSVRFLDYQKVKDAERAKAKELFGTAEEPTALASKIMGIKSR 179

Query: 181 PVEVPNVSEEEEQQTPKV-VAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
             +VP+   E       V V  T ++   ++  I  +++L+E+ RLEK L  G++P    
Sbjct: 180 TFDVPSGGAERAPADKAVRVKLTEKERKRVEKMIREARSLQEITRLEKELNEGRIPG--- 236

Query: 240 IPDYDSGSKDVKENDE 255
                 G+ D  E+ E
Sbjct: 237 ------GALDAGEDSE 246

Involved in pre-mRNA splicing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q4P5F9|RU2A_USTMA U2 small nuclear ribonucleoprotein A' OS=Ustilago maydis (strain 521 / FGSC 9021) GN=LEA1 PE=3 SV=1

 Score =  150 bits (379), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 149/243 (61%), Gaps = 11/243 (4%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           ++LT +L+ +S    N +++RELDLRG KI  IENLG T DQ D IDL+DN+I  L N P
Sbjct: 1   MKLTPELLSRSSSSINTLRDRELDLRGLKIPAIENLGVTRDQNDAIDLTDNDIRYLGNFP 60

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
            L +L TL + NN I+RI+P IG  LP LH+L LTNN + +L E+  L+   +L++L L+
Sbjct: 61  LLQQLKTLQLANNLISRIDPRIGHSLPALHSLNLTNNCISDLSELVHLSKCRRLEYLCLM 120

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEA-----KKESM 176
               +++  YR +VI KL  +RVLD++++K+KER  A  L  +E+    A      K+  
Sbjct: 121 GTPASREAQYREFVIWKLPQVRVLDYQRIKDKERARAKDLMETEDGRPTALAANILKKLG 180

Query: 177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQII------AIKAAIVNSQTLEEVARLEKVLK 230
            + M V+V  +  +++   P  +  +  +++      AI+ AI +S++LEE+ +LE+ LK
Sbjct: 181 ASAMDVDVDVMVGKQKTFEPGRLNGSSRRLLTAEERKAIEDAIESSESLEEIRKLEEQLK 240

Query: 231 SGQ 233
            G 
Sbjct: 241 MGH 243

Involved in pre-mRNA splicing.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q7S9P4|RU2A_NEUCR U2 small nuclear ribonucleoprotein A' OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=lea-1 PE=3 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 133/250 (53%), Gaps = 7/250 (2%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           +RLTADLI  S  + N +KERE+DLRG++I  IENLG      D ID +DN+I  L N P
Sbjct: 1   MRLTADLINNSLSYLNPLKEREIDLRGHRIPAIENLGVAGPH-DAIDFTDNDIQVLGNFP 59

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
              R+ TL++  NRI +I   +    P L  LVL +N +  L +++ L   P+L  L L 
Sbjct: 60  LSPRIRTLLLARNRIAQIQSTLPNATPNLKNLVLASNNIGELADLEVLGRFPRLTHLVLT 119

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASE----EMEEEAKKESMK 177
           DN +TKK NYR +V+     +R LD+ KVK+ ER +A  LF +     E+ +  K    K
Sbjct: 120 DNPVTKKENYRYWVLWLCPQVRFLDYVKVKDAERQKAKELFGTADEPTELAKTIKGIKSK 179

Query: 178 TLMPVEVPNVSEEEEQQTPKV--VAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235
           T                + K+  +  T ++   ++  I  + +LEE+ RLEK L  G+LP
Sbjct: 180 TFDVGASSANGAAGSGPSSKLSRLKLTEKEKKKLQDLIKKADSLEEIIRLEKALNEGRLP 239

Query: 236 ADLKIPDYDS 245
             +   D D+
Sbjct: 240 PGIIAEDDDA 249

Involved in pre-mRNA splicing.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
224072439	284	predicted protein [Populus trichocarpa]	0.989	0.996	0.836	1e-129
255543298	287	U2 small nuclear ribonucleoprotein A, pu	1.0	0.996	0.818	1e-128
224057876	284	predicted protein [Populus trichocarpa]	0.989	0.996	0.825	1e-126
225425356	287	PREDICTED: U2 small nuclear ribonucleopr	1.0	0.996	0.783	1e-122
295687235	285	U2 small nuclear ribonucleoprotein A [Go	0.993	0.996	0.804	1e-121
358248152	287	uncharacterized protein LOC100803110 [Gl	1.0	0.996	0.773	1e-118
388511743	280	unknown [Lotus japonicus]	0.975	0.996	0.777	1e-117
363808322	276	uncharacterized protein LOC100779162 [Gl	0.961	0.996	0.770	1e-116
77416949	286	unknown [Solanum tuberosum]	0.996	0.996	0.752	1e-115
449445608	279	PREDICTED: U2 small nuclear ribonucleopr	0.972	0.996	0.766	1e-111

>gi|224072439|ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/287 (83%), Positives = 258/287 (89%), Gaps = 4/287 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTLIINNNRITRINPNIGE+LPKLHTLVLTNNRLVNL EIDPL+SLPKLQFLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVIHKLKSLRVLDFKKVK KER EA  LF+S+E+EEEAK+ES+KT  
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 181 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P E+PN+ E  EEQQ PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK L SGQLPADLK
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           I D D+GS  VKE D+KM  D +NEA  EPNN+E QK++E   MEQ+
Sbjct: 241 ILD-DTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEATPMEQE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543298|ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis] gi|223548673|gb|EEF50164.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/287 (81%), Positives = 258/287 (89%), Gaps = 1/287 (0%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLENM
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+L RLGTL+INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL SLPKLQFLSL
Sbjct: 61  PYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDNSITKKPNYRLY+IHKLKSLRVLDFKKVK+KERMEA +LFAS+E+EEEA +ES KT +
Sbjct: 121 LDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFI 180

Query: 181 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P EVPNV+E+ EEQQ PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK L SGQ+P DL 
Sbjct: 181 PGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLN 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           I D DS    V+E D+KM  D +N+ D EP+N++ QK+ + A+MEQ+
Sbjct: 241 IFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDSASMEQE 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057876|ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1| predicted protein [Populus trichocarpa]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/287 (82%), Positives = 254/287 (88%), Gaps = 4/287 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADL+WKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLENM
Sbjct: 1   MVRLTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTLIINNNRITRINPNIGE+LPKLHTLVL NNRLVNL EIDPL SLPKL FLSL
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRLVNLAEIDPLASLPKLHFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVIHKLKSLRVLDFKKVK KER EA  LFAS+E+EEEA++ES+KT  
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFT 180

Query: 181 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P EVPNV E  EEQQ PKVVAPTP+QIIAIKAAIVNSQTLEEVARLEK L SGQLPADLK
Sbjct: 181 PGEVPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           I D  +GS  VKE D+KM  D +NEA  EPNN+E QK++E   MEQ+
Sbjct: 241 ILD-GTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEATPMEQE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425356|ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera] gi|296085571|emb|CBI29303.3| unnamed protein product [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/287 (78%), Positives = 253/287 (88%), Gaps = 1/287 (0%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAI+ERELDLRGNK+AVIENLGATEDQFDTIDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL+INNNRITRINPNIGE+LPKLHTLVLTNNRLVNL EIDPL+S PKLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVIH+LKSLR+LDFKKVKNKER+EA +LFAS+E+EEEAK+E +KT  
Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180

Query: 181 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P E+PN  E  EEQQ PKVV P+PE++IAIKAAIVNSQTLEEVARLEK LKSGQLPADLK
Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
               ++ +  V E D+KMV    N +  EP  VE QKND++A MEQ+
Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVEEQKNDDVAPMEQE 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295687235|gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/287 (80%), Positives = 258/287 (89%), Gaps = 3/287 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTADLIWK PHFFNA+KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL+N 
Sbjct: 1   MVKLTADLIWKCPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLDNF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+L RLGTL+INNNR+TRINPNIGEFLP LHTLVLTNNRLVNLVEIDPL+SLPKLQFLSL
Sbjct: 61  PYLKRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLSSLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVIHKLKSLRVLDFKKVK KER+EA +LFAS+E EEE KKES KT+ 
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAENLFASKEAEEEIKKESTKTVA 180

Query: 181 PVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P EVPNVSE  EE+Q PKVVAPTPEQI+AIKAAIVNSQTLEEVARLEK L++GQLPADLK
Sbjct: 181 PKEVPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTLEEVARLEKALQTGQLPADLK 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           IP  D+ +   K  DEK V D++NE++VEP+N++  KN+E A MEQ+
Sbjct: 241 IPGDDTNA--AKGGDEKKVSDIQNESNVEPDNMDEDKNEEPAPMEQE 285

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248152|ref|NP_001239826.1| uncharacterized protein LOC100803110 [Glycine max] gi|255635750|gb|ACU18224.1| unknown [Glycine max]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/287 (77%), Positives = 246/287 (85%), Gaps = 1/287 (0%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFN IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNTIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENV 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGT++INNNRITRINPNIGEFLP LHTLVLTNNR+VNLVEIDPL SLPKL FLSL
Sbjct: 61  PYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVI+ LKSLRVLDFKKVKNKER+EA +LFAS+E+ EE ++   KT  
Sbjct: 121 LDNNITKKPNYRLYVINNLKSLRVLDFKKVKNKERLEAKNLFASKEVIEEIQRTPAKTFS 180

Query: 181 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
             E PNVSE  EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK LKSGQLPADL 
Sbjct: 181 TGETPNVSEAIEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLI 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
               +    +V E  E M+ D  ++AD + N+ + Q+N + A+MEQD
Sbjct: 241 SLSDNIMLDNVDEKHEDMIHDDRSQADGKSNDTQEQRNTDSASMEQD 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511743|gb|AFK43933.1| unknown [Lotus japonicus]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/287 (77%), Positives = 242/287 (84%), Gaps = 8/287 (2%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDT+DLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+ NRLGTL+INNNR+TRINPNIGEFLP LHTLVLTNNR+VNLVEIDPL SLPKLQFLSL
Sbjct: 61  PYRNRLGTLLINNNRVTRINPNIGEFLPSLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVI KL SLRVLDFKKVKNKER+EA +LF SEE  E A+K  +KT+ 
Sbjct: 121 LDNNITKKPNYRLYVISKLDSLRVLDFKKVKNKERLEAKNLFGSEEAIENAQKTPVKTIS 180

Query: 181 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P E P+VSE  EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK LKSG LP DLK
Sbjct: 181 PAETPDVSEATEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
             + +    +V E  E +V D       E N+   QKN + AAMEQD
Sbjct: 241 SLNGNVTLDNVNEKGEDVVHD-------ESNDTREQKNTDSAAMEQD 280

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808322|ref|NP_001242503.1| uncharacterized protein LOC100779162 [Glycine max] gi|255647036|gb|ACU23986.1| unknown [Glycine max]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/287 (77%), Positives = 245/287 (85%), Gaps = 12/287 (4%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENV 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGT++INNNRITRINPNIGEFLP LHTLVLTNNR+VNLVEIDPL SLPKL FLSL
Sbjct: 61  PYLNRLGTMLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLHFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVI+KLKSLRVLDFKKVKNKER+EA +LF+S+E+ EE ++   K+  
Sbjct: 121 LDNNITKKPNYRLYVINKLKSLRVLDFKKVKNKERLEAKNLFSSKEVIEEIQRTPTKS-- 178

Query: 181 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
             E PNVSE  EEQQ PKVVAPTPEQIIAIKAAIVN QTLEEVARLEK LKSGQLPADL 
Sbjct: 179 --ETPNVSEVIEEQQMPKVVAPTPEQIIAIKAAIVNFQTLEEVARLEKALKSGQLPADLL 236

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           + + D       E  E M+ D   +AD E N+ + Q+N + A+MEQD
Sbjct: 237 LDNVD-------EKHEDMIHDDRGQADGESNDTQEQRNTDSASMEQD 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416949|gb|ABA81870.1| unknown [Solanum tuberosum]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/287 (75%), Positives = 247/287 (86%), Gaps = 2/287 (0%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLTADLIWKSPHFFNAI+ERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL++NNNRITRINPNIGEFLPKLHTL++T+NRL NLVEIDPL SLPKL+FLSL
Sbjct: 61  PYLNRLGTLLMNNNRITRINPNIGEFLPKLHTLIITSNRLTNLVEIDPLASLPKLKFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           L+N+ITK+PNYRLYVIHKLKSLR+LDF+KVK KER+EA+ LFAS+E EE+ KKES+KT +
Sbjct: 121 LENNITKRPNYRLYVIHKLKSLRLLDFRKVKQKERLEASKLFASQEAEEQVKKESVKT-V 179

Query: 181 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           PVEV   +EE +E Q  K VAPTPEQIIAIKAAIVNSQTLEEVARLE+ LKSGQLPADL 
Sbjct: 180 PVEVAVPAEEPKEAQASKPVAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 239

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           I D+D  +K     ++KMV D +++A+    NV  QK D    MEQ+
Sbjct: 240 IGDHDVTAKKEDAKEDKMVTDSDDKANKAEENVPEQKPDGPTDMEQE 286

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445608|ref|XP_004140564.1| PREDICTED: U2 small nuclear ribonucleoprotein A'-like [Cucumis sativus]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/287 (76%), Positives = 245/287 (85%), Gaps = 9/287 (3%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MVRLT DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD IDLSDNEIVKLENM
Sbjct: 1   MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENM 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P+LNRLGTL+INNNRITRINPNIGEFLP LHTLVLTNNRLVNLVEIDPL SL KLQFLSL
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLASLSKLQFLSL 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180
           LDN+ITKKPNYRLYVIHKLKS+RVLDFKKV+NKER+EA +LF+S+E+EEEAKKES+KT +
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV 180

Query: 181 PVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239
           P EV   S+  EE+QTP V APTPEQIIAIKAAIVNSQTLEEVARLE+ LKSGQLPADL 
Sbjct: 181 PGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLN 240

Query: 240 IPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQD 286
           + + ++     K+ D+K + D  +E        E+  NDE   MEQ+
Sbjct: 241 LLEDNTAQNITKDKDDKTMSDSGDE--------EHVTNDESTPMEQE 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2024316	249	U2A' "U2 small nuclear ribonuc	0.832	0.955	0.590	4.1e-65
ZFIN|ZDB-GENE-041114-82	277	snrpa1 "small nuclear ribonucl	0.541	0.559	0.451	2.5e-39
UNIPROTKB|F1NAC8	255	SNRPA1 "Uncharacterized protei	0.541	0.607	0.464	4e-39
UNIPROTKB|A6H788	255	SNRPA1 "Uncharacterized protei	0.541	0.607	0.464	1.7e-38
UNIPROTKB|E2QWU2	255	SNRPA1 "Uncharacterized protei	0.541	0.607	0.464	2.2e-38
UNIPROTKB|P09661	255	SNRPA1 "U2 small nuclear ribon	0.541	0.607	0.464	2.2e-38
UNIPROTKB|F1RWS8	255	SNRPA1 "Uncharacterized protei	0.541	0.607	0.464	2.2e-38
MGI|MGI:1916231	255	Snrpa1 "small nuclear ribonucl	0.541	0.607	0.464	1.9e-37
RGD|2320415	255	LOC100364748 "U2 small nuclear	0.541	0.607	0.464	4e-37
RGD|2320494	255	Snrpa1 "small nuclear ribonucl	0.541	0.607	0.464	4e-37

TAIR|locus:2024316 U2A' "U2 small nuclear ribonucleoprotein A" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 143/242 (59%), Positives = 157/242 (64%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTADLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFDTIDLSDNEIVKLEN 
Sbjct:     1 MVKLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P+                      EFLPK               EIDPL S+PKLQ+LSL
Sbjct:    61 PYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNLVEIDPLASIPKLQYLSL 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERXXXXXXXXXXXXXXXXXXXXXXTLM 180
             LDN+ITKK NYRLYVIHKLKSLRVLDF K+K KER                       + 
Sbjct:   121 LDNNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEVK 180

Query:   181 XXXXXXXXXXXXQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKI 240
                          +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L I
Sbjct:   181 KVSETAEN----PETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLII 236

Query:   241 PD 242
             PD
Sbjct:   237 PD 238

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA;IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

ZFIN|ZDB-GENE-041114-82 snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 70/155 (45%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + N +++RELDLRG KI V+ENLGAT DQFDTIDLSDNE+ KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTIDLSDNEVRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL ++  L  LSL
Sbjct:    61 PLLKRLKTLLVNNNRICRIGENLEQALPDLKELILTSNNIQELGDLDPLATVKSLSLLSL 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKER 155

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NAC8 SNRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 72/155 (46%), Positives = 93/155 (60%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                E+DPL+S+  L +LS+
Sbjct:    61 PLLRRLKTLLMNNNRICRIGEGLEQALPSLTELVLTNNNISELGELDPLSSIKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|A6H788 SNRPA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E2QWU2 SNRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 325 (119.5 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|P09661 SNRPA1 "U2 small nuclear ribonucleoprotein A'" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0003723 "RNA binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005686 "U2 snRNP" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1RWS8 SNRPA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 325 (119.5 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1916231 Snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|2320415 LOC100364748 "U2 small nuclear ribonucleoprotein polypeptide A-like" [Rattus norvegicus (taxid:10116)]

 Score = 325 (119.5 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

RGD|2320494 Snrpa1 "small nuclear ribonucleoprotein polypeptide A'" [Rattus norvegicus (taxid:10116)]

 Score = 325 (119.5 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 72/155 (46%), Positives = 92/155 (59%)

Query:     1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
             MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct:     1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query:    61 PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
             P                       + LP                ++DPL SL  L +LS+
Sbjct:    61 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI 120

Query:   121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
             L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct:   121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09661	RU2A_HUMAN	No assigned EC number	0.5104	0.7972	0.8941	yes	no
P57784	RU2A_MOUSE	No assigned EC number	0.5062	0.7972	0.8941	yes	no
P43333	RU2A_ARATH	No assigned EC number	0.8106	0.8286	0.9518	yes	no
Q9V4Q8	RU2A_DROME	No assigned EC number	0.4369	0.8216	0.8867	yes	no
Q4WV66	RU2A_ASPFU	No assigned EC number	0.3984	0.8531	0.9644	yes	no
Q9BLB6	RU2A_CAEEL	No assigned EC number	0.4430	0.8076	0.9130	yes	no
Q9USX8	RU2A_SCHPO	No assigned EC number	0.4033	0.8181	0.9790	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
smart00446	19	smart00446, LRRcap, occurring C-terminal to leucin	0.003

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLD 122
            L +L ++NNR+T I     + LP L  L L+ N   NL  I P   + LP L+ L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN---NLTSISPEAFSGLPSLRSLDLSG 57

Query: 123 NSI 125
           N++
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 46  TIDLSDNEIVKLENMP--HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100
           ++DLS+N +  + +     L  L  L ++ N +T I+P     LP L +L L+ N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 12/152 (7%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGA-----TEDQFDTIDLSDNEIV 55
           + RL  +L   +     +   R L L     + I +L             ++DL+ N + 
Sbjct: 47  VNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR 106

Query: 56  KLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPK 114
              + +  L  L +L ++NN IT I P IG     L  L L++N++ +L    PL +LP 
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPN 164

Query: 115 LQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+ L L  N ++  P     ++  L +L  LD
Sbjct: 165 LKNLDLSFNDLSDLPK----LLSNLSNLNNLD 192

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 9/158 (5%)

Query: 7   DLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK-LENMPHLNR 65
           DL        N      LDL GNKI+ +          + +DLS+N I++ L ++ +L  
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L ++NN++  +  +IG  L  L TL L+NN++ +   I  L SL  L+ L L  NS+
Sbjct: 234 LSGLELSNNKLEDLPESIGN-LSNLETLDLSNNQISS---ISSLGSLTNLRELDLSGNSL 289

Query: 126 TKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFA 163
           +      L +I  L  L  L    +   + +E      
Sbjct: 290 SN----ALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINN 73
                  +ELDL  NKI  + +          +DLS N++  L   + +L+ L  L ++ 
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N+I+ + P   E L  L  L L+NN ++ L  +  L++L  L  L L +N +   P   +
Sbjct: 196 NKISDL-PPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDLPES-I 251

Query: 134 YVIHKLKSLRVL 145
             +  L++L + 
Sbjct: 252 GNLSNLETLDLS 263

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 89  KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            L +L L+NNRL  +        LP L+ L L  N++T            L SLR LD 
Sbjct: 1   NLKSLDLSNNRLTVI-PDGAFKGLPNLKVLDLSGNNLTSISP---EAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|197729 smart00446, LRRcap, occurring C-terminal to leucine-rich repeats

 Score = 34.2 bits (80), Expect = 0.003
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 128 KPNYRLYVIHKLKSLRVLD 146
             +YR  VI  L  LR LD
Sbjct: 1   LAHYREKVIELLPQLRKLD 19

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins. Length = 19

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.53
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.43
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.4
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.32
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.17
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.14
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
PLN03150	623	hypothetical protein; Provisional	98.82
PLN03150	623	hypothetical protein; Provisional	98.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.7
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.54
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.21
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.36
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	95.26
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.24
smart00370	26	LRR Leucine-rich repeats, outliers.	95.24
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.7
KOG4308	478	consensus LRR-containing protein [Function unknown	93.44
smart00370	26	LRR Leucine-rich repeats, outliers.	93.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.26
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.4
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.16
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.18
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.34
KOG4341	483	consensus F-box protein containing LRR [General fu	83.21
KOG4341	483	consensus F-box protein containing LRR [General fu	83.14
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.69

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.92  E-value=1.1e-25  Score=182.74  Aligned_cols=171  Identities=50%  Similarity=0.761  Sum_probs=75.6

Q ss_pred             CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (286)
Q Consensus         1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~   80 (286)
                      |++||.+.|++.+.+.++.++++|+|++|.|+.+......+.+|+.|+|++|.|+.++++..++.|+.|++++|+|+++.
T Consensus         1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred             CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence            89999999999999999999999999999999998765568999999999999999999999999999999999999997


Q ss_pred             CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS  160 (286)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  160 (286)
                      +.....+++|+.|++++|+|..+..+..+..+++|+.|++.+|+++..+.|+.+.+..+|+|+.||.....-.++..+..
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~  160 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEK  160 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B------
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccc
Confidence            65545789999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHH
Q 023142          161 LFASEEMEEEA  171 (286)
Q Consensus       161 ~~~~~~~~~~~  171 (286)
                      +|.+.....+.
T Consensus       161 ~f~~~~~~~~~  171 (175)
T PF14580_consen  161 LFKGKRAAQLA  171 (175)
T ss_dssp             -----------
T ss_pred             ccccccccccc
Confidence            99887755444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=99.92  E-value=3.8e-24  Score=172.74  Aligned_cols=231  Identities=54%  Similarity=0.839  Sum_probs=200.6

Q ss_pred             CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (286)
Q Consensus         1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~   80 (286)
                      |+++|++.+.+.+.|.+...=+.++|.+.++..+............+||++|.+..++.|..++.|.+|.|++|+|+.|.
T Consensus         1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~   80 (233)
T KOG1644|consen    1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID   80 (233)
T ss_pred             CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeec
Confidence            89999999999999999999999999999998887655567788999999999999999999999999999999999999


Q ss_pred             CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS  160 (286)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  160 (286)
                      +.....+++|..|.|.+|.|..+.++..+..||+|++|.+-+|+++....||.+.++.+|+|++||+++....++..+..
T Consensus        81 p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~  160 (233)
T KOG1644|consen   81 PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEV  160 (233)
T ss_pred             cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHH
Confidence            98877889999999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhHHHHHhhh-cccCCCCCCC-CCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142          161 LFASEEMEEEAKKES-MKTLMPVEVP-NVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA  236 (286)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~  236 (286)
                      +|.+..+....+.+. ...+.++... ..|.    .+.. ..-+..+...|..+|.++++|.|+...+-.+++|.||.
T Consensus       161 ~f~~k~~k~~~~~i~~s~~~~~~~~~~~~p~----~~~~-~~~t~e~~~~iK~ai~~a~sl~Ei~RL~~~l~~G~~p~  233 (233)
T KOG1644|consen  161 FFKGKKGKKAAKSINRSKASDPGSHYAELPN----ANSV-VTPTPEDREKIKEAIKNASSLAEINRLEQLLQSGQIPK  233 (233)
T ss_pred             HhccccchhhhhhhhhhhccCchhccccCCc----ccCC-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence            997777766666554 4445444221 0000    1111 22278899999999999999999999999999999994

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=8.7e-23  Score=188.27  Aligned_cols=226  Identities=18%  Similarity=0.147  Sum_probs=156.8

Q ss_pred             CCCCcCCCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142           11 KSPHFFNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus        11 ~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      --..++.++.|+.+.+..|++.  .||..+..+..|++||||+|+++.+| .+...+++..|+||+|+|..||...|-++
T Consensus        70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL  149 (1255)
T KOG0444|consen   70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL  149 (1255)
T ss_pred             hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence            3455666677777777777765  56766666777777777777777776 67777777777777777777777777777


Q ss_pred             CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-----CCCCch-----------------HHHHhhCCCCcEE
Q 023142           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-----KKPNYR-----------------LYVIHKLKSLRVL  145 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-----~ip~~~-----------------~~~l~~l~~L~~L  145 (286)
                      +-|-.|+||+|++..+|+  ....+..|++|.|++|++.     ++|...                 ...+..+.+|+.+
T Consensus       150 tDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             HhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence            777777777777777776  5666666777777776543     222210                 0035566677777


Q ss_pred             eCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCC-hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 023142          146 DFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVS-EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR  224 (286)
Q Consensus       146 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l  224 (286)
                      |++.|.+..++.+......+...++         +...+..+. .++...++..|+++.|+++.+|.++.++++|..|.+
T Consensus       228 DlS~N~Lp~vPecly~l~~LrrLNL---------S~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  228 DLSENNLPIVPECLYKLRNLRRLNL---------SGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             cccccCCCcchHHHhhhhhhheecc---------CcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence            7777777666665544443332221         111111111 124567899999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCccCCCCCCC
Q 023142          225 LEKVLKSGQLPADLKIPDYDSGS  247 (286)
Q Consensus       225 ~~N~l~~g~iP~~~~~~~~~~~~  247 (286)
                      .+|+|.-..||++|++..-....
T Consensus       299 n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  299 NNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             ccCcccccCCccchhhhhhhHHH
Confidence            99999888899999988765543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.9e-21  Score=178.17  Aligned_cols=216  Identities=19%  Similarity=0.245  Sum_probs=163.4

Q ss_pred             ccCHHHHhC--CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142            3 RLTADLIWK--SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (286)
Q Consensus         3 ~Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~   78 (286)
                      .++.+.+.+  +..|.++++|+.+++.+|.++.||.......+|+.|+|.+|.|+.+.  .+..++.|+.|+|+.|.|+.
T Consensus        84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~  163 (873)
T KOG4194|consen   84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE  163 (873)
T ss_pred             eccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc
Confidence            355566654  55678999999999999999999987777778999999999999885  68899999999999999999


Q ss_pred             cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA  158 (286)
Q Consensus        79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  158 (286)
                      ++...|..-.++++|+|++|.|+.+.. +.|.++.+|..|.|+.|+++.+|..   .|.++++|+.|++..|.+..++..
T Consensus       164 i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  164 IPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             ccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCHH---Hhhhcchhhhhhccccceeeehhh
Confidence            998888777899999999999999987 8999999999999999999999986   788899999999999998765432


Q ss_pred             HHHhhcchhHHHHHhh--hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142          159 ASLFASEEMEEEAKKE--SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       159 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~  230 (286)
                        .|.++.+...++--  ....+..+.+-      .+.+++.++|..|++..+. ..+.++++|+.|++++|.++
T Consensus       240 --tFqgL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  240 --TFQGLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             --hhcCchhhhhhhhhhcCcccccCccee------eecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence              36666654433211  11122222221      2445555555555555444 34455555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=2.3e-21  Score=177.61  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=20.8

Q ss_pred             hccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 023142          192 EQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       192 ~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l  229 (286)
                      .+..|+.|.|++|.+..|. .+|..+.+|++|++.+|.+
T Consensus       339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            3445555555555555555 3444455555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.78  E-value=9.3e-21  Score=174.99  Aligned_cols=241  Identities=21%  Similarity=0.188  Sum_probs=181.4

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      |+.++.+..|+.||||+|+++.+|..+.+-+++-+|+||+|+|..||  -|.+++-|-.|+||+|++..+||.+ ..+..
T Consensus        96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~  174 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSM  174 (1255)
T ss_pred             CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhh
Confidence            77788899999999999999999988877888999999999999998  4788899999999999999998876 57777


Q ss_pred             ccEEEeecCcCC-----CCCCC-------------------ccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEE
Q 023142           90 LHTLVLTNNRLV-----NLVEI-------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (286)
Q Consensus        90 L~~L~Ls~N~i~-----~~~~~-------------------~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (286)
                      |++|.|++|.+.     .+|.+                   .++..+.+|+.+|++.|.+..+|.    .+..+++|+.|
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrL  250 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRL  250 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH----HHhhhhhhhee
Confidence            888888887542     23321                   144556778888999999888888    78888889999


Q ss_pred             eCCCCChHHHHHHHHHhhcchhHHH-----------------HHhh----hcccCCCCCCCCCChhhhccCCccCCCCHH
Q 023142          146 DFKKVKNKERMEAASLFASEEMEEE-----------------AKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPE  204 (286)
Q Consensus       146 ~l~~n~~~~~~~~~~~~~~~~~~~~-----------------~~~~----~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n  204 (286)
                      ++++|.+++.......+......++                 +..+    ...+|. +.+   +++|++.+|+++..++|
T Consensus       251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe-GiP---SGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE-GIP---SGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc-CCc---cchhhhhhhHHHHhhcc
Confidence            9999988776555544433332111                 1111    112221 111   25589999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCccccccccccccCCCC
Q 023142          205 QIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVEN  263 (286)
Q Consensus       205 ~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (286)
                      .+.-+|+.++.|..|+.|.+++|.|  -.+|..|........+|.-.+..--|.++-.+
T Consensus       327 ~LElVPEglcRC~kL~kL~L~~NrL--iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  327 KLELVPEGLCRCVKLQKLKLDHNRL--ITLPEAIHLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             ccccCchhhhhhHHHHHhcccccce--eechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence            9999999999999999999999999  57999988877766665543434455555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=4.4e-19  Score=180.49  Aligned_cols=222  Identities=19%  Similarity=0.187  Sum_probs=147.1

Q ss_pred             CCCcCCCCCccEEEeeCCCCc-ccccc-ccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIA-VIENL-GATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ++.|..+++|+.|++++|+++ .+|.. +..+++|++|+|++|.++.....+.+++|++|+|++|.+++..+..+..+++
T Consensus        86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            445777888888888888887 67744 3368888888888888774322355778888888888887655555677888


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChHH-HHHHHHHhhcchh
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNKE-RMEAASLFASEEM  167 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~  167 (286)
                      |++|++++|.+.+..+ ..++++++|++|++++|.+. .+|.    .++.+++|++|++++|.+.. ++..   |.....
T Consensus       166 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~  237 (968)
T PLN00113        166 LKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYE---IGGLTS  237 (968)
T ss_pred             CCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChh---HhcCCC
Confidence            8888888888775444 46778888888888888876 3455    67888888888888887642 1111   111111


Q ss_pred             HHHHHhhhcccCCCCCCC-CCC-hhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCC
Q 023142          168 EEEAKKESMKTLMPVEVP-NVS-EEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD  244 (286)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~  244 (286)
                            +....+....+. .+| ..+.+.+|+.++++.|++. .+|..+.++++|++|++++|.+. |.+|..+......
T Consensus       238 ------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L  310 (968)
T PLN00113        238 ------LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNL  310 (968)
T ss_pred             ------CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCC
Confidence                  110111100000 111 1245777888888888887 67788888888888888888884 6777766555444


Q ss_pred             CCCc
Q 023142          245 SGSK  248 (286)
Q Consensus       245 ~~~~  248 (286)
                      ..++
T Consensus       311 ~~L~  314 (968)
T PLN00113        311 EILH  314 (968)
T ss_pred             cEEE
Confidence            4443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.75  E-value=2.5e-19  Score=182.33  Aligned_cols=129  Identities=25%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             CCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|++|++++|.++ .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            33333333333333 23333444444444444444443 223 3444444444444444444333333334444444444


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      ++|.+++..+ ..++++++|++|++++|.++ .+|.    .++.+++|++|++++|.+
T Consensus       220 ~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        220 GYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             cCCccCCcCC-hhHhcCCCCCEEECcCceeccccCh----hHhCCCCCCEEECcCCee
Confidence            4444443222 23444444444444444443 2232    344444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=4.2e-20  Score=146.30  Aligned_cols=170  Identities=24%  Similarity=0.323  Sum_probs=105.0

Q ss_pred             ccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCC
Q 023142           34 IENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL  112 (286)
Q Consensus        34 l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l  112 (286)
                      +|..|. +...+.|.||+|+++.+| .+..+.+|+.|++.+|+|+.+|..+ +.+++|+.|+++-|++..+|.  .|+.+
T Consensus        26 ~~gLf~-~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lpr--gfgs~  101 (264)
T KOG0617|consen   26 LPGLFN-MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPR--GFGSF  101 (264)
T ss_pred             cccccc-hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCcc--ccCCC
Confidence            344333 555666666666666553 5666666666666666666666554 466666666666666666654  66666


Q ss_pred             CCccEEEecCCcCC--CCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh
Q 023142          113 PKLQFLSLLDNSIT--KKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE  190 (286)
Q Consensus       113 ~~L~~L~L~~N~l~--~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (286)
                      +.|+.|||.+|++.  .+|.    .|..+..|+.|.++.|.+.-+                         |      +++
T Consensus       102 p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe~l-------------------------p------~dv  146 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFEIL-------------------------P------PDV  146 (264)
T ss_pred             chhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcccC-------------------------C------hhh
Confidence            66666666666665  4555    455566666666666653311                         1      123


Q ss_pred             hhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCC
Q 023142          191 EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD  244 (286)
Q Consensus       191 ~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~  244 (286)
                      +++++|+.+.+.+|.+-.+|..++.++.|++|.+.+|.+  ..+|+.+......
T Consensus       147 g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl--~vlppel~~l~l~  198 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL--TVLPPELANLDLV  198 (264)
T ss_pred             hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee--eecChhhhhhhhh
Confidence            456666666666677777777777777777777777777  4577766655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=9.1e-21  Score=167.08  Aligned_cols=211  Identities=20%  Similarity=0.241  Sum_probs=123.3

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L   90 (286)
                      |++++.+..++.+++++|++..+|..+..+.++..|+.++|.+..++ +++.+..|..++..+|+++.+|++++ .+.+|
T Consensus        84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l  162 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKL  162 (565)
T ss_pred             CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHH-HHHHH
Confidence            44444444444444444444444444444444555555555555443 44555555555555555555554443 44555


Q ss_pred             cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEE  170 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  170 (286)
                      ..+++.+|+++.+|+ ..+ +++.|++|+...|-+..+|.    .++.+.+|..|++..|++...+    -|.++.....
T Consensus       163 ~~l~~~~n~l~~l~~-~~i-~m~~L~~ld~~~N~L~tlP~----~lg~l~~L~~LyL~~Nki~~lP----ef~gcs~L~E  232 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPE-NHI-AMKRLKHLDCNSNLLETLPP----ELGGLESLELLYLRRNKIRFLP----EFPGCSLLKE  232 (565)
T ss_pred             HHhhccccchhhCCH-HHH-HHHHHHhcccchhhhhcCCh----hhcchhhhHHHHhhhcccccCC----CCCccHHHHH
Confidence            555555555555554 222 35566666666666666666    5666666777777777665544    2555443222


Q ss_pred             HHhh-hcccCCCCCCCCCChh-hhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142          171 AKKE-SMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP  241 (286)
Q Consensus       171 ~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~  241 (286)
                      +... ......|.      +. ..+.++.++++.+|+++.+|..+..+.+|++||+++|.+  .++|.+++..
T Consensus       233 lh~g~N~i~~lpa------e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl  297 (565)
T KOG0472|consen  233 LHVGENQIEMLPA------EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL  297 (565)
T ss_pred             HHhcccHHHhhHH------HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc--ccCCcccccc
Confidence            1100 00111111      11 256788999999999999999999999999999999999  4699988876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=1.4e-18  Score=153.33  Aligned_cols=139  Identities=20%  Similarity=0.255  Sum_probs=122.5

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~   91 (286)
                      |+...++..|++|+...|.++.+|+.++.+.+|..|+|..|+|..+|.|++|..|..|+++.|+|+-+|.....+++++.
T Consensus       176 ~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~  255 (565)
T KOG0472|consen  176 PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL  255 (565)
T ss_pred             CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence            44455566777888888888888888888899999999999999999999999999999999999999888888999999


Q ss_pred             EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME  157 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~  157 (286)
                      .|||+.|+++.+|+  .+.-+++|.+||+++|.|+.+|.    .++++ +|+.|-+.+|++..+..
T Consensus       256 vLDLRdNklke~Pd--e~clLrsL~rLDlSNN~is~Lp~----sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  256 VLDLRDNKLKEVPD--EICLLRSLERLDLSNNDISSLPY----SLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             eeeccccccccCch--HHHHhhhhhhhcccCCccccCCc----ccccc-eeeehhhcCCchHHHHH
Confidence            99999999999987  78888999999999999999988    78999 99999999999987754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-17  Score=132.61  Aligned_cols=151  Identities=25%  Similarity=0.301  Sum_probs=128.6

Q ss_pred             HhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142            9 IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus         9 i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      ..+.+.+.++.+.+.|.||+|+++.+|+.++.+.+|++|++++|+|..+| .++.++.|+.|+++-|++..+|.++ +.+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~  101 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSF  101 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCC
Confidence            34566778888899999999999999988888999999999999999997 8999999999999999999887765 689


Q ss_pred             CCccEEEeecCcCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcc
Q 023142           88 PKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASE  165 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  165 (286)
                      |.|+.|||.+|++..  +|  +.|-.+..|+.|+|++|.+.-+|.    .++.+++|+.|.++.|.+-+.+.....+..+
T Consensus       102 p~levldltynnl~e~~lp--gnff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdndll~lpkeig~lt~l  175 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLP--GNFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDNDLLSLPKEIGDLTRL  175 (264)
T ss_pred             chhhhhhccccccccccCC--cchhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence            999999999999875  44  467788889999999999999988    6899999999999999987766555444443


Q ss_pred             h
Q 023142          166 E  166 (286)
Q Consensus       166 ~  166 (286)
                      .
T Consensus       176 r  176 (264)
T KOG0617|consen  176 R  176 (264)
T ss_pred             H
Confidence            3

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=1.1e-16  Score=156.22  Aligned_cols=184  Identities=16%  Similarity=0.151  Sum_probs=120.0

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      .+|+.|++++|+|+.+|..   +++|+.|++++|+|+.+|.+.  ..|+.|++++|+|+.+|..    ..+|+.|+|++|
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N  352 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPTL----PSGLQELSVSDN  352 (788)
T ss_pred             hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc--ccccccccccCcccccccc----ccccceEecCCC
Confidence            3455666666666666642   467888888888888876532  3567777778877777531    246788888888


Q ss_pred             cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhccc
Q 023142           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKT  178 (286)
Q Consensus        99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (286)
                      +|+.+|.  .   .++|+.|++++|.++.+|..       ..+|+.|++++|.+..++..   ...+.         ...
T Consensus       353 ~Ls~LP~--l---p~~L~~L~Ls~N~L~~LP~l-------~~~L~~LdLs~N~Lt~LP~l---~s~L~---------~Ld  408 (788)
T PRK15387        353 QLASLPT--L---PSELYKLWAYNNRLTSLPAL-------PSGLKELIVSGNRLTSLPVL---PSELK---------ELM  408 (788)
T ss_pred             ccCCCCC--C---CcccceehhhccccccCccc-------ccccceEEecCCcccCCCCc---ccCCC---------EEE
Confidence            8888775  1   24567777777777777651       24677777777776644321   11111         011


Q ss_pred             CCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142          179 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL  238 (286)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~  238 (286)
                      +....+..+|.  ...+|..+++++|+|+.||..+.+++.|+.|++++|.|+ |.+|..+
T Consensus       409 LS~N~LssIP~--l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls-~~~~~~L  465 (788)
T PRK15387        409 VSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQAL  465 (788)
T ss_pred             ccCCcCCCCCc--chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC-chHHHHH
Confidence            11111111111  123578899999999999999999999999999999995 6666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=1.3e-15  Score=148.72  Aligned_cols=208  Identities=15%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc--------------
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG--------------   84 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~--------------   84 (286)
                      ++|+.|++++|+|+.+|..   +++|++|++++|+|+.+|.+  .++|+.|++++|.++.+|....              
T Consensus       222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~  296 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS  296 (788)
T ss_pred             cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCcccc
Confidence            3567777777777776643   45677777777777666532  2344444444444444332000              


Q ss_pred             --cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142           85 --EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF  162 (286)
Q Consensus        85 --~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  162 (286)
                        ..+++|+.|++++|+|+.+|.+  .   ..|+.|++++|.++.+|..       ..+|+.|++++|++..++..   .
T Consensus       297 LP~~p~~L~~LdLS~N~L~~Lp~l--p---~~L~~L~Ls~N~L~~LP~l-------p~~Lq~LdLS~N~Ls~LP~l---p  361 (788)
T PRK15387        297 LPVLPPGLQELSVSDNQLASLPAL--P---SELCKLWAYNNQLTSLPTL-------PSGLQELSVSDNQLASLPTL---P  361 (788)
T ss_pred             ccccccccceeECCCCccccCCCC--c---ccccccccccCcccccccc-------ccccceEecCCCccCCCCCC---C
Confidence              0124556666666666555431  1   1233333333333333320       12456666666655543311   0


Q ss_pred             hcchhHHHH-----------HhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023142          163 ASEEMEEEA-----------KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS  231 (286)
Q Consensus       163 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~  231 (286)
                      .........           ..+....+....+..+|.  ...+|+.+++++|+|+.||...   .+|+.|++++|+++ 
T Consensus       362 ~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt-  435 (788)
T PRK15387        362 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLT-  435 (788)
T ss_pred             cccceehhhccccccCcccccccceEEecCCcccCCCC--cccCCCEEEccCCcCCCCCcch---hhhhhhhhccCccc-
Confidence            000000000           000000111111111111  1346888889999988888543   46889999999994 


Q ss_pred             CCCCCCCccCCCCCCCcccccc
Q 023142          232 GQLPADLKIPDYDSGSKDVKEN  253 (286)
Q Consensus       232 g~iP~~~~~~~~~~~~~~~~~~  253 (286)
                       .||..+........++.-.+.
T Consensus       436 -~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        436 -RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             -ccChHHhhccCCCeEECCCCC
Confidence             699888776655555544443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.56  E-value=8.5e-17  Score=154.40  Aligned_cols=197  Identities=19%  Similarity=0.231  Sum_probs=105.8

Q ss_pred             CCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEee
Q 023142           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls   96 (286)
                      ..+|+++++++|+++.+|.+++.+.+|+.+...+|.++.+| .+...++|+.|.+.+|.++.+|+.. .++..|++|+|.
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l-e~~~sL~tLdL~  318 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL-EGLKSLRTLDLQ  318 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-cccceeeeeeeh
Confidence            45677777777777777777777777777777777776655 3444455555555555555554432 234455555555


Q ss_pred             cCcCCCCCC------------------------------------------------CccCCCCCCccEEEecCCcCCCC
Q 023142           97 NNRLVNLVE------------------------------------------------IDPLTSLPKLQFLSLLDNSITKK  128 (286)
Q Consensus        97 ~N~i~~~~~------------------------------------------------~~~l~~l~~L~~L~L~~N~l~~i  128 (286)
                      .|.|..+|+                                                +..+.+++.|+.|+|++|++..+
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            555544443                                                12344556666666666666666


Q ss_pred             CCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-
Q 023142          129 PNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-  207 (286)
Q Consensus       129 p~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-  207 (286)
                      |+.   .+.++..|+.|++++|+++.++........+...-.         ....+...|+...+..++.++++.|+++ 
T Consensus       399 pas---~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a---------hsN~l~~fPe~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  399 PAS---KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA---------HSNQLLSFPELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             CHH---HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh---------cCCceeechhhhhcCcceEEecccchhhh
Confidence            654   455666666666666666655544433333221110         0111111122234555666666666666 


Q ss_pred             -HHHHHHHhcCCHHHHHHHHHH
Q 023142          208 -AIKAAIVNSQTLEEVARLEKV  228 (286)
Q Consensus       208 -~ip~~i~~~~~L~~l~l~~N~  228 (286)
                       .+|.+.. .+.|++|++++|.
T Consensus       467 ~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  467 VTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhCC-CcccceeeccCCc
Confidence             3333222 2566666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=1.8e-15  Score=148.18  Aligned_cols=187  Identities=18%  Similarity=0.232  Sum_probs=120.3

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      .+|+.|++++|+|+.+|..+  ..+|+.|+|++|.+..+| .+.  .+|+.|++++|+|+.+|..++   ++|+.|++++
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~  292 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYD  292 (754)
T ss_pred             cCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCC
Confidence            58999999999999888654  357889999999988887 333  478888999888888876442   4788888888


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK  177 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (286)
                      |+|+.+|.  .+.  ++|+.|++++|.++.+|..    +  .++|+.|++++|.+..++...  ...+..         .
T Consensus       293 N~Lt~LP~--~lp--~sL~~L~Ls~N~Lt~LP~~----l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~---------L  351 (754)
T PRK15370        293 NSIRTLPA--HLP--SGITHLNVQSNSLTALPET----L--PPGLKTLEAGENALTSLPASL--PPELQV---------L  351 (754)
T ss_pred             CccccCcc--cch--hhHHHHHhcCCccccCCcc----c--cccceeccccCCccccCChhh--cCcccE---------E
Confidence            88888765  221  3567777777777766652    1  246666777776665443211  111110         0


Q ss_pred             cCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142          178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL  238 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~  238 (286)
                      .+....+..+|.. -..+|+.|++++|+|+.+|..+..  +|+.|++++|.+.  .+|..+
T Consensus       352 ~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L~--~LP~sl  407 (754)
T PRK15370        352 DVSKNQITVLPET-LPPTITTLDVSRNALTNLPENLPA--ALQIMQASRNNLV--RLPESL  407 (754)
T ss_pred             ECCCCCCCcCChh-hcCCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCcc--cCchhH
Confidence            0000011111111 123677888888888888876653  5888888888883  566544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.53  E-value=9.1e-17  Score=141.67  Aligned_cols=110  Identities=30%  Similarity=0.378  Sum_probs=62.9

Q ss_pred             CccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccC-CcCcccCCccccCCCCccEEEe
Q 023142           20 KERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      .-..++|..|+|+.|| ..|..+++|+.||||+|.|+.| | .|.++++|..|-+.+ |+|++++.+.|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3455666666666666 4556666666666666666666 2 566666665555544 6666666666665555555555


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      .-|++..+.. +.|..+++|..|.+.+|.+..++.
T Consensus       148 Nan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  148 NANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK  181 (498)
T ss_pred             ChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc
Confidence            5555555443 445555555555555554444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.52  E-value=5.2e-16  Score=136.91  Aligned_cols=199  Identities=21%  Similarity=0.215  Sum_probs=149.6

Q ss_pred             EEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec-Cc
Q 023142           23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN-NR   99 (286)
Q Consensus        23 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~   99 (286)
                      ..+.++-.++++|..+  .+....++|..|+|+.||  .|+.+++|+.|+|++|+|+.|.++.|.++..|..|-+.+ |+
T Consensus        50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             eEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            4567777888888655  356788999999999997  799999999999999999999999999999887776666 89


Q ss_pred             CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHH--------------------
Q 023142          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAA--------------------  159 (286)
Q Consensus       100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--------------------  159 (286)
                      |+.+|. +.|+++..|+.|.+.-|++..++..   .+..+++|..|.+..|.+..+....                    
T Consensus       128 I~~l~k-~~F~gL~slqrLllNan~i~Cir~~---al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  128 ITDLPK-GAFGGLSSLQRLLLNANHINCIRQD---ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             hhhhhh-hHhhhHHHHHHHhcChhhhcchhHH---HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            999998 8999999999999999999987765   7888888888888888766553310                    


Q ss_pred             --------------HHhhcch---hHH-------------HH-------HhhhcccCCCCCCCCCChh--hhccCCccCC
Q 023142          160 --------------SLFASEE---MEE-------------EA-------KKESMKTLMPVEVPNVSEE--EEQQTPKVVA  200 (286)
Q Consensus       160 --------------~~~~~~~---~~~-------------~~-------~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~  200 (286)
                                    ..|++..   +..             +.       ......++... +.  |..  ..+.+|+.++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~-~c--P~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS-IC--PAKCFKKLPNLRKLN  280 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC-cC--hHHHHhhcccceEec
Confidence                          0011100   100             00       00111111111 11  222  5788999999


Q ss_pred             CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142          201 PTPEQIIAIK-AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       201 ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~  230 (286)
                      +++|+|+.|- .+|..+..+++|.+..|++.
T Consensus       281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~  311 (498)
T KOG4237|consen  281 LSNNKITRIEDGAFEGAAELQELYLTRNKLE  311 (498)
T ss_pred             cCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence            9999999776 78899999999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=3.7e-15  Score=145.93  Aligned_cols=117  Identities=28%  Similarity=0.377  Sum_probs=55.3

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~   99 (286)
                      ...|++++++++.+|..+  .+.|+.|+|++|.|+.+| .+.  ++|++|++++|+++.+|....   .+|+.|++++|.
T Consensus       180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~  252 (754)
T PRK15370        180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP---DTIQEMELSINR  252 (754)
T ss_pred             ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh---ccccEEECcCCc
Confidence            345555555555555433  234555555555555554 221  345555555555555543221   245555555555


Q ss_pred             CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus       100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      |..+|.  .+.  .+|+.|++++|+++.+|..    +  .++|+.|++++|.+..
T Consensus       253 L~~LP~--~l~--s~L~~L~Ls~N~L~~LP~~----l--~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        253 ITELPE--RLP--SALQSLDLFHNKISCLPEN----L--PEELRYLSVYDNSIRT  297 (754)
T ss_pred             cCcCCh--hHh--CCCCEEECcCCccCccccc----c--CCCCcEEECCCCcccc
Confidence            555443  221  2455555555555555441    1  1345555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.48  E-value=1.1e-16  Score=146.79  Aligned_cols=196  Identities=19%  Similarity=0.215  Sum_probs=157.2

Q ss_pred             CCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      .+..-...+++.|++..+|..++.+..|+.+.|..|.|..+| .+.++..|.+|+|+.|+++.+|..++ .|+ |+.|-+
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~lp-Lkvli~  150 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DLP-LKVLIV  150 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh-cCc-ceeEEE
Confidence            344555678888988888877777888888888899888886 78888889999999999998888774 444 888889


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES  175 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  175 (286)
                      ++|+++.+|+  .++.++.|..|+.+.|.+..+|.    .++.+.+|+.|.++.|.+..++...                
T Consensus       151 sNNkl~~lp~--~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l~~lp~El----------------  208 (722)
T KOG0532|consen  151 SNNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHLEDLPEEL----------------  208 (722)
T ss_pred             ecCccccCCc--ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhhhhCCHHH----------------
Confidence            9999998887  67788888999999999988888    7888888888888888765442111                


Q ss_pred             cccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCccccccc
Q 023142          176 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND  254 (286)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~  254 (286)
                                      ....|..++++.|+++.||..|.+++.|++|.|.+|-|+  .-|..|-..+..+....+..+.
T Consensus       209 ----------------~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq--SPPAqIC~kGkVHIFKyL~~qA  269 (722)
T KOG0532|consen  209 ----------------CSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ--SPPAQICEKGKVHIFKYLSTQA  269 (722)
T ss_pred             ----------------hCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC--CChHHHHhccceeeeeeecchh
Confidence                            123588999999999999999999999999999999996  4677777666666655555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.43  E-value=5.6e-14  Score=114.28  Aligned_cols=124  Identities=33%  Similarity=0.467  Sum_probs=46.4

Q ss_pred             EeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCC-CCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCC
Q 023142           25 DLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL  103 (286)
Q Consensus        25 ~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~  103 (286)
                      .+..+.|..++.... ...++.|+|++|.|+.|..++ .+.+|+.|++++|+|+.+. + +..++.|+.|++++|+|+.+
T Consensus         3 ~lt~~~i~~~~~~~n-~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~-l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen    3 RLTANMIEQIAQYNN-PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-G-LPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-
T ss_pred             ccccccccccccccc-ccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-C-ccChhhhhhcccCCCCCCcc
Confidence            355566777776554 557899999999999998887 6899999999999999995 3 46899999999999999998


Q ss_pred             CCCccC-CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142          104 VEIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus       104 ~~~~~l-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      .+  .+ ..+++|+.|++++|+|..+....  .+..+++|+.|++.+|++...
T Consensus        80 ~~--~l~~~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   80 SE--GLDKNLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             CH--HHHHH-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGGGS
T ss_pred             cc--chHHhCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcccch
Confidence            65  34 46899999999999999775532  578999999999999998643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.40  E-value=1e-14  Score=140.25  Aligned_cols=185  Identities=16%  Similarity=0.212  Sum_probs=107.0

Q ss_pred             CCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142           41 EDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS  119 (286)
Q Consensus        41 l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~  119 (286)
                      ..+|+++++++|+++.+| ++..+.+|+.+...+|+++.+|..++ ..++|+.|.+.+|.+..+|+  ...+++.|++|+
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~nel~yip~--~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNELEYIPP--FLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhhhhhCCC--cccccceeeeee
Confidence            346777777777777776 55677777777777777777766654 66677777777777777766  455677777777


Q ss_pred             ecCCcCCCCCCchHHHHhhCCC-CcEEeCCCCChHHHHHHH----------------------HHhhcchhHHHH--Hhh
Q 023142          120 LLDNSITKKPNYRLYVIHKLKS-LRVLDFKKVKNKERMEAA----------------------SLFASEEMEEEA--KKE  174 (286)
Q Consensus       120 L~~N~l~~ip~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~----------------------~~~~~~~~~~~~--~~~  174 (286)
                      |..|.+..+|..   .+..... |+.|..+.|++...+...                      ..+.+.....++  ...
T Consensus       317 L~~N~L~~lp~~---~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  317 LQSNNLPSLPDN---FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             ehhccccccchH---HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            777777777663   2222222 444555554443322000                      000000000000  000


Q ss_pred             hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCcc
Q 023142          175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKI  240 (286)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~  240 (286)
                      +...|+...+      .++..|+.|+|++|++++||..+.+|..|+.|....|++.  .+| .+..
T Consensus       394 rL~~fpas~~------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~  450 (1081)
T KOG0618|consen  394 RLNSFPASKL------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQ  450 (1081)
T ss_pred             ccccCCHHHH------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee--ech-hhhh
Confidence            1111222111      3566677777777777777777777777777777777773  466 4433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.39  E-value=1.6e-14  Score=123.94  Aligned_cols=133  Identities=26%  Similarity=0.270  Sum_probs=117.2

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      ..|+.+|||+|.|+.+.....-.+.++.|++|+|.|..+.++..+++|+.|+|++|.++.+.. ....+.+.+.|.|+.|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh
Confidence            358899999999999998887789999999999999999999999999999999999999854 4458889999999999


Q ss_pred             cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME  157 (286)
Q Consensus        99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~  157 (286)
                      .|..+..   +..+.+|..||+++|+|..+...+  .++++|.|.++.+.+|++..++.
T Consensus       363 ~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  363 KIETLSG---LRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hHhhhhh---hHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCccccch
Confidence            9998754   888999999999999999765433  68999999999999999865543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.34  E-value=6.1e-14  Score=129.16  Aligned_cols=173  Identities=25%  Similarity=0.306  Sum_probs=82.3

Q ss_pred             CCccEEEeeCCCCccccccccCCC-CcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEee
Q 023142           19 IKERELDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls   96 (286)
                      +.++.|++.+|.++.++.....+. +|+.|++++|.+..+| .+..+++|+.|++++|+++.++.... .++.|+.|+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~~L~ls  194 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLNNLDLS  194 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhhheecc
Confidence            344444444444444444433332 4444444444444442 34444444444444444444433221 33444444444


Q ss_pred             cCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhc
Q 023142           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM  176 (286)
Q Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (286)
                      +|+++.+|.  ....+..|..|.+++|++..++.    .+..+.++..+.+..|++...                     
T Consensus       195 ~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~~---------------------  247 (394)
T COG4886         195 GNKISDLPP--EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLEDL---------------------  247 (394)
T ss_pred             CCccccCch--hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeeec---------------------
Confidence            444444443  12223334444444443332222    234444444444444432211                     


Q ss_pred             ccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                          +      ...+.+.+++.+++++|+++.++. ++...+++.+++++|.+.
T Consensus       248 ----~------~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         248 ----P------ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ----c------chhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence                0      111345567777778887777776 777777777777777663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=1.2e-13  Score=120.46  Aligned_cols=191  Identities=19%  Similarity=0.204  Sum_probs=121.5

Q ss_pred             CcCCCCCccEEEeeCCCCc--cc---cccccCCCCcCEEeccCCCCCCCC---------------CCCCCCCCCeEeccC
Q 023142           14 HFFNAIKERELDLRGNKIA--VI---ENLGATEDQFDTIDLSDNEIVKLE---------------NMPHLNRLGTLIINN   73 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~--~l---~~~~~~l~~L~~L~Ls~N~l~~i~---------------~~~~l~~L~~L~Ls~   73 (286)
                      ++..+++|++|+||.|.|.  .+   ...+..+..|+.|.|.+|.+....               -.+.-+.|+++..++
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            3455667778888887775  22   244556777778888877776431               134456777777777


Q ss_pred             CcCcccCC----ccccCCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCCCCCCchHH-HHhhCCCCcEE
Q 023142           74 NRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVL  145 (286)
Q Consensus        74 N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L  145 (286)
                      |++..-+.    ..|+.++.|+.+.++.|.|..-..   ...|..|+.|++|||.+|-++.-....+. .+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            77776543    345566777777777777653211   12466777788888888777743222111 56677777777


Q ss_pred             eCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-----HHHHHHHhcCCHH
Q 023142          146 DFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAIVNSQTLE  220 (286)
Q Consensus       146 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-----~ip~~i~~~~~L~  220 (286)
                      ++++|.+....          ...+...+.     .          ..++|.++.+..|.|+     .+...+...+.|.
T Consensus       247 ~l~dcll~~~G----------a~a~~~al~-----~----------~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  247 NLGDCLLENEG----------AIAFVDALK-----E----------SAPSLEVLELAGNEITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             ccccccccccc----------HHHHHHHHh-----c----------cCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence            77777654321          111111111     1          1336889999999887     3446678899999


Q ss_pred             HHHHHHHHH
Q 023142          221 EVARLEKVL  229 (286)
Q Consensus       221 ~l~l~~N~l  229 (286)
                      .|++++|.+
T Consensus       302 kLnLngN~l  310 (382)
T KOG1909|consen  302 KLNLNGNRL  310 (382)
T ss_pred             HhcCCcccc
Confidence            999999999

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.32  E-value=7.4e-13  Score=113.73  Aligned_cols=177  Identities=21%  Similarity=0.246  Sum_probs=110.8

Q ss_pred             CCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC-------------------------CCCCCCCCeEecc
Q 023142           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-------------------------MPHLNRLGTLIIN   72 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------~~~l~~L~~L~Ls   72 (286)
                      +.+|..+.+|++.-..|-+....-+.|+++...+..+...|.                         +.....|+.++|+
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS  292 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS  292 (490)
T ss_pred             hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence            455666666666555554444444566666665555443221                         1122456666666


Q ss_pred             CCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           73 NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        73 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      +|.|+.++.+. .-.|.++.|++++|.|..+..   +..+++|+.|||++|.++.+..    .-..+.+.+.|.+++|.+
T Consensus       293 ~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~G----wh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  293 GNLITQIDESV-KLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVG----WHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ccchhhhhhhh-hhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhh----hHhhhcCEeeeehhhhhH
Confidence            66666665544 355666666666666666532   5566666666666666666655    234556666666666655


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 023142          153 KERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip--~~i~~~~~L~~l~l~~N~l~  230 (286)
                      .+..                                +.+++-+|+.+++.+|+|..+.  ..|++++-|+.+.+.+|-+.
T Consensus       365 E~LS--------------------------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  365 ETLS--------------------------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhh--------------------------------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            4332                                2234557899999999999776  57899999999999999984


Q ss_pred             cCCCCC
Q 023142          231 SGQLPA  236 (286)
Q Consensus       231 ~g~iP~  236 (286)
                        .+|.
T Consensus       413 --~~vd  416 (490)
T KOG1259|consen  413 --GSVD  416 (490)
T ss_pred             --ccch
Confidence              3554

>PLN03210 Resistant to P

Probab=99.30  E-value=8.3e-13  Score=136.45  Aligned_cols=87  Identities=17%  Similarity=0.261  Sum_probs=54.5

Q ss_pred             CCCCccEEEeeCCCCccccccccCCCCcCEEeccCCC-CCCCCCCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEE
Q 023142           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE-IVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .+.+|+.|++++|++..++..+..+++|+.|+|+++. +..+|.+..+++|+.|+|++| .+..+|.. +..+++|+.|+
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~  687 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLD  687 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEe
Confidence            4566777777777777666656667777777777653 556666666777777777665 34445433 34666666666


Q ss_pred             eecC-cCCCCC
Q 023142           95 LTNN-RLVNLV  104 (286)
Q Consensus        95 Ls~N-~i~~~~  104 (286)
                      +++| .+..+|
T Consensus       688 L~~c~~L~~Lp  698 (1153)
T PLN03210        688 MSRCENLEILP  698 (1153)
T ss_pred             CCCCCCcCccC
Confidence            6664 344444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.21  E-value=1.1e-12  Score=116.84  Aligned_cols=36  Identities=8%  Similarity=0.111  Sum_probs=22.6

Q ss_pred             CCccCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHh
Q 023142          195 TPKVVAPTPEQII-----AIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       195 ~l~~l~ls~n~l~-----~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                      .|+.++++.|.++     .+...+..+++|+++++++|.+.
T Consensus       251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            4566666666552     45556666677777777777663

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=1.3e-12  Score=120.25  Aligned_cols=136  Identities=22%  Similarity=0.264  Sum_probs=118.3

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L   90 (286)
                      |..+.++..|+.|+|+.|+++.+|..++.|+ |+.|-+++|+++.+| .++.+..|..|+.+.|.+..+|+.. .++.+|
T Consensus       114 p~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql-~~l~sl  191 (722)
T KOG0532|consen  114 PEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSL  191 (722)
T ss_pred             chhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHh-hhHHHH
Confidence            6677888889999999999999998888665 899999999999887 7888899999999999999997766 588899


Q ss_pred             cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM  156 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~  156 (286)
                      +.|++..|.+..+|+  .+. .-.|..||+++|+++.||-    .|.+|++|++|-|.+|++..-+
T Consensus       192 r~l~vrRn~l~~lp~--El~-~LpLi~lDfScNkis~iPv----~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  192 RDLNVRRNHLEDLPE--ELC-SLPLIRLDFSCNKISYLPV----DFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHHHHhhhhhhhCCH--HHh-CCceeeeecccCceeecch----hhhhhhhheeeeeccCCCCCCh
Confidence            999999999999887  666 4468999999999999998    7999999999999999986543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=4.2e-12  Score=116.95  Aligned_cols=183  Identities=25%  Similarity=0.326  Sum_probs=144.7

Q ss_pred             cCHHHHhCCCCcCCCC--CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCC-CCCCCCeEeccCCcCcccC
Q 023142            4 LTADLIWKSPHFFNAI--KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRIN   80 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~Ls~N~l~~l~   80 (286)
                      +..+.+.+.+......  +|+.|++++|++..+|..+..+++|+.|++++|+++.++... .++.|+.|++++|+++.+|
T Consensus       123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~  202 (394)
T COG4886         123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP  202 (394)
T ss_pred             cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence            4455566655555554  899999999999999877778999999999999999998554 9999999999999999998


Q ss_pred             CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS  160 (286)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  160 (286)
                      +.. .....|++|.+++|.+...+.  .+.++.++..+.+.+|++..++.    .+..++.++.|++++|.+..+..   
T Consensus       203 ~~~-~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~----~~~~l~~l~~L~~s~n~i~~i~~---  272 (394)
T COG4886         203 PEI-ELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPE----SIGNLSNLETLDLSNNQISSISS---  272 (394)
T ss_pred             hhh-hhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccc----hhccccccceecccccccccccc---
Confidence            754 345669999999996555544  58888899999999999988766    68899999999999998765421   


Q ss_pred             HhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 023142          161 LFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARL  225 (286)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~  225 (286)
                                                   .+.+.++..++++.|.++.++.....+.........
T Consensus       273 -----------------------------~~~~~~l~~L~~s~n~~~~~~~~~~~~~~~~~~~~~  308 (394)
T COG4886         273 -----------------------------LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN  308 (394)
T ss_pred             -----------------------------ccccCccCEEeccCccccccchhhhccchhHHhhhh
Confidence                                         112557889999999998776666555555554444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.17  E-value=1.9e-12  Score=120.13  Aligned_cols=195  Identities=25%  Similarity=0.231  Sum_probs=140.5

Q ss_pred             CCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC-CCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      .+..++.+.+..|.|..+...+..+.+|+.|++.+|.|..+.. +..+++|++|++++|+|+.+..  +..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            4566777778888888766656668899999999999999887 8889999999999999998854  246777999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHH-HhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV-IHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE  174 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      ++|.|+.+..   +..++.|+.+++++|.++.+..    . ...+.+++.+.+.+|.+..+........ ...   . .+
T Consensus       148 ~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~----~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~-l~~---~-~l  215 (414)
T KOG0531|consen  148 SGNLISDISG---LESLKSLKLLDLSYNRIVDIEN----DELSELISLEELDLGGNSIREIEGLDLLKK-LVL---L-SL  215 (414)
T ss_pred             ccCcchhccC---CccchhhhcccCCcchhhhhhh----hhhhhccchHHHhccCCchhcccchHHHHH-HHH---h-hc
Confidence            9999998865   6668899999999999988765    2 4788888999999998776543321111 100   0 11


Q ss_pred             hcccCCCCCCCCCChhhhccC--CccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          175 SMKTLMPVEVPNVSEEEEQQT--PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~--l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                      ..+.+..-     .+...+..  +..+++++|.+..++..+..+..+..+++.+|.+.
T Consensus       216 ~~n~i~~~-----~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  216 LDNKISKL-----EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccccceec-----cCcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            11111110     00011222  67888888888887777788888888888888874

>PLN03210 Resistant to P

Probab=99.15  E-value=9.3e-11  Score=121.40  Aligned_cols=209  Identities=17%  Similarity=0.191  Sum_probs=130.7

Q ss_pred             CCcCCC-CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCc-CcccCCccccCCCC
Q 023142           13 PHFFNA-IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNR-ITRINPNIGEFLPK   89 (286)
Q Consensus        13 ~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~   89 (286)
                      ..|..+ .+|+.|.+.++.++.+|..+. +.+|+.|++++|.+..++ ++..+++|+.|+|+++. +..+|.  +..+++
T Consensus       582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~  658 (1153)
T PLN03210        582 EGFDYLPPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATN  658 (1153)
T ss_pred             cchhhcCcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCc
Confidence            334443 357888888888888887664 678888888888888775 67788888888888764 566653  457888


Q ss_pred             ccEEEeecCc-CCCCCCCccCCCCCCccEEEecCC-cCCCCCCchHHHHhhCCCCcEEeCCCCChH-HHHHHHHHhhcch
Q 023142           90 LHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKVKNK-ERMEAASLFASEE  166 (286)
Q Consensus        90 L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~  166 (286)
                      |+.|++++|. +..+|.  .+.++++|+.|++++| .+..+|..    + .+++|+.|++++|... ..+..   .....
T Consensus       659 Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~  728 (1153)
T PLN03210        659 LETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFPDI---STNIS  728 (1153)
T ss_pred             ccEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence            8999998874 666665  6888888888888875 56677762    2 5777777777776421 11100   00000


Q ss_pred             hHHHHHhhhcccCCCCC----------------------CCCCCh--hhhccCCccCCCCHHHH-HHHHHHHHhcCCHHH
Q 023142          167 MEEEAKKESMKTLMPVE----------------------VPNVSE--EEEQQTPKVVAPTPEQI-IAIKAAIVNSQTLEE  221 (286)
Q Consensus       167 ~~~~~~~~~~~~~~~~~----------------------~~~~~~--~~~~~~l~~l~ls~n~l-~~ip~~i~~~~~L~~  221 (286)
                      ...+ .......+ |..                      ...+..  .....+|+.+++++|.. ..+|..++++++|+.
T Consensus       729 ~L~L-~~n~i~~l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~  806 (1153)
T PLN03210        729 WLDL-DETAIEEF-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH  806 (1153)
T ss_pred             eeec-CCCccccc-cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence            0000 00000000 000                      000000  01234677888887754 478888999999999


Q ss_pred             HHHHHHH-HhcCCCCCCC
Q 023142          222 VARLEKV-LKSGQLPADL  238 (286)
Q Consensus       222 l~l~~N~-l~~g~iP~~~  238 (286)
                      |++.++. +  +.+|..+
T Consensus       807 L~Ls~C~~L--~~LP~~~  822 (1153)
T PLN03210        807 LEIENCINL--ETLPTGI  822 (1153)
T ss_pred             EECCCCCCc--CeeCCCC
Confidence            9988753 4  5688765

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.14  E-value=3.2e-11  Score=81.05  Aligned_cols=61  Identities=38%  Similarity=0.627  Sum_probs=38.9

Q ss_pred             CCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcC
Q 023142           64 NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI  125 (286)
Q Consensus        64 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  125 (286)
                      ++|++|++++|+|+.+++..|.++++|++|++++|.|+.+++ ..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            355666666666666666666666666666666666666655 5666666666666666653

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.11  E-value=5.8e-12  Score=112.25  Aligned_cols=135  Identities=21%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCccEEEeeCCCCc-----cccccccCCCCcCEEeccCCCCCCCC--------CCCCCCCCCeEeccCCcCcccCCcccc
Q 023142           19 IKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKLE--------NMPHLNRLGTLIINNNRITRINPNIGE   85 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~l~~L~~L~Ls~N~l~~l~~~~~~   85 (286)
                      ..|+.|+++++.++     .++..+...+.++.|+++++.+...+        .+..+++|+.|++++|.+....+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            44666666666653     23333444555666666666554211        234455666666666665533222222


Q ss_pred             CCC---CccEEEeecCcCCCCCC---CccCCCC-CCccEEEecCCcCCCCC-CchHHHHhhCCCCcEEeCCCCChH
Q 023142           86 FLP---KLHTLVLTNNRLVNLVE---IDPLTSL-PKLQFLSLLDNSITKKP-NYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        86 ~l~---~L~~L~Ls~N~i~~~~~---~~~l~~l-~~L~~L~L~~N~l~~ip-~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      .+.   +|++|++++|.++....   ...+..+ ++|+.|++++|.++... ......+..+++|++|++++|.+.
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            222   26666666665552110   0123334 55666666666655211 001113445555666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=1.1e-10  Score=78.39  Aligned_cols=59  Identities=36%  Similarity=0.572  Sum_probs=43.4

Q ss_pred             CCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142           42 DQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (286)
Q Consensus        42 ~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i  100 (286)
                      ++|++|++++|+|+.+|  .|.++++|++|++++|+++.+++..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            35677777777777665  567777777777777777777777777777777777777764

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=2e-11  Score=109.39  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=119.9

Q ss_pred             CCCCCccEEEeeCCCCcccc---ccccCCCCcCEEeccCCCCCCC-C--CCCCCCCCCeEeccCCcCcccC-CccccCCC
Q 023142           16 FNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVKL-E--NMPHLNRLGTLIINNNRITRIN-PNIGEFLP   88 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i-~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~   88 (286)
                      ..|++++.|+||+|-|..+-   .....+++|+.|+|+.|++... .  .-..+++|+.|.|+.|.++.-. ..+...+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            45677777888877766432   3445677778888887777643 2  1235667777777777776321 12334667


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhH
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEME  168 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  168 (286)
                      +|+.|+|..|..-.+.. .....+..|+.|+|++|++-..+...  ..+.++.|+.|+++.+.+.++.     +......
T Consensus       223 sl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~--~~~~l~~L~~Lnls~tgi~si~-----~~d~~s~  294 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGY--KVGTLPGLNQLNLSSTGIASIA-----EPDVESL  294 (505)
T ss_pred             cHHHhhhhcccccceec-chhhhhhHHhhccccCCccccccccc--ccccccchhhhhccccCcchhc-----CCCccch
Confidence            77777777774222222 23445667777888887777655321  5677777777777777765542     1111100


Q ss_pred             HHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 023142          169 EEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip--~~i~~~~~L~~l~l~~N~l~  230 (286)
                      .                   ......+|++|+++.|+|...+  ..+..+.+|..|....|.+.
T Consensus       295 ~-------------------kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  295 D-------------------KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             h-------------------hhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            0                   1123557999999999997665  57788888999888888875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.93  E-value=2.7e-11  Score=114.56  Aligned_cols=135  Identities=28%  Similarity=0.363  Sum_probs=101.6

Q ss_pred             CCCcCCCCCccEEEeeCCCCcccccc----------cc----------------------CCCCcCEEeccCCCCCCCC-
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENL----------GA----------------------TEDQFDTIDLSDNEIVKLE-   58 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~----------~~----------------------~l~~L~~L~Ls~N~l~~i~-   58 (286)
                      |..++.+..|++|.|.++.|...-+.          ++                      ....|.+.++++|.++.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            55677888999999999887532111          10                      1235666777888887774 


Q ss_pred             CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhh
Q 023142           59 NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK  138 (286)
Q Consensus        59 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~  138 (286)
                      ++.-++.|+.|+|++|+++.+.  ....|++|++|||++|.++.+|-+ ...+|. |..|.+++|.++.+.+     +.+
T Consensus       182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l-~~~gc~-L~~L~lrnN~l~tL~g-----ie~  252 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQL-SMVGCK-LQLLNLRNNALTTLRG-----IEN  252 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcccccc-chhhhh-heeeeecccHHHhhhh-----HHh
Confidence            6777888999999999998885  346888999999999999888873 444555 8999999998887754     788


Q ss_pred             CCCCcEEeCCCCChHHH
Q 023142          139 LKSLRVLDFKKVKNKER  155 (286)
Q Consensus       139 l~~L~~L~l~~n~~~~~  155 (286)
                      +.+|+.||+++|-+.+.
T Consensus       253 LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hhhhhccchhHhhhhcc
Confidence            89999999999866543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.90  E-value=1.8e-11  Score=115.75  Aligned_cols=129  Identities=22%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~   99 (286)
                      +|...++++|.+..+...+.-++.|+.|+|++|+++++..+..|+.|++|+|++|++..+|.-...+|. |..|.+++|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~  243 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA  243 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence            577788889999888877777889999999999999888888899999999999999988754333444 8999999999


Q ss_pred             CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus       100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      ++.+..   +.++++|+.||+++|-|......  ..++.+..|+.|.|.+|++.-
T Consensus       244 l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  244 LTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence            888764   77888999999999988754332  147778888899999998743

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=3e-10  Score=105.48  Aligned_cols=142  Identities=35%  Similarity=0.378  Sum_probs=113.2

Q ss_pred             cCHHHHhC-CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            4 LTADLIWK-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         4 Lt~~~i~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      +..+.|.. ...+..+.+|..|++.+|+|..+...+..+++|++|++++|.|+.+..+..++.|+.|++++|.|+.+.. 
T Consensus        79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-  157 (414)
T KOG0531|consen   79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-  157 (414)
T ss_pred             cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-
Confidence            34556666 3347888999999999999999988666799999999999999999999999999999999999999854 


Q ss_pred             cccCCCCccEEEeecCcCCCCCCCcc-CCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           83 IGEFLPKLHTLVLTNNRLVNLVEIDP-LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~-l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                       +..++.|+.+++++|.++.+..  . ...+.+++.+++.+|.+..+..     +..+..+..+++..|.+..
T Consensus       158 -~~~l~~L~~l~l~~n~i~~ie~--~~~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  158 -LESLKSLKLLDLSYNRIVDIEN--DELSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             -CccchhhhcccCCcchhhhhhh--hhhhhccchHHHhccCCchhcccc-----hHHHHHHHHhhccccccee
Confidence             3468999999999999998865  2 4788899999999999887754     2333344444555555543

>PLN03150 hypothetical protein; Provisional

Probab=98.82  E-value=8.8e-09  Score=100.25  Aligned_cols=104  Identities=20%  Similarity=0.303  Sum_probs=74.9

Q ss_pred             CcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEe
Q 023142           43 QFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL  120 (286)
Q Consensus        43 ~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L  120 (286)
                      .++.|+|++|.++ .+| .+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..+ ..++++++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEEC
Confidence            3677888888887 345 67778888888888888876545555678888888888888876444 46778888888888


Q ss_pred             cCCcCC-CCCCchHHHHhh-CCCCcEEeCCCCC
Q 023142          121 LDNSIT-KKPNYRLYVIHK-LKSLRVLDFKKVK  151 (286)
Q Consensus       121 ~~N~l~-~ip~~~~~~l~~-l~~L~~L~l~~n~  151 (286)
                      ++|+++ .+|.    .+.. +.++..+++.+|.
T Consensus       498 s~N~l~g~iP~----~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPA----ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCCh----HHhhccccCceEEecCCc
Confidence            888877 5665    3443 3456677777775

>PLN03150 hypothetical protein; Provisional

Probab=98.77  E-value=1.5e-08  Score=98.55  Aligned_cols=83  Identities=25%  Similarity=0.343  Sum_probs=52.5

Q ss_pred             CCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcE
Q 023142           66 LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRV  144 (286)
Q Consensus        66 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~  144 (286)
                      ++.|+|++|.+++..+..+..+++|+.|+|++|.|++..+ ..++.+++|+.|+|++|+++ .+|.    .++.+++|+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCE
Confidence            5566677776665444445566677777777776664333 25666667777777777666 4555    5666777777


Q ss_pred             EeCCCCChH
Q 023142          145 LDFKKVKNK  153 (286)
Q Consensus       145 L~l~~n~~~  153 (286)
                      |++++|.+.
T Consensus       495 L~Ls~N~l~  503 (623)
T PLN03150        495 LNLNGNSLS  503 (623)
T ss_pred             EECcCCccc
Confidence            777766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.70  E-value=8.2e-09  Score=87.35  Aligned_cols=122  Identities=28%  Similarity=0.415  Sum_probs=101.5

Q ss_pred             ccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCC--cCcc-cCCccccCCCCccEEEeecCcCCCCCCCccCC
Q 023142           34 IENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN--RITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT  110 (286)
Q Consensus        34 l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N--~l~~-l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~  110 (286)
                      +....-.+..|+.|.+.+..++.+..|..+++|++|.++.|  ++.. ++..+ ..+|+|++|++++|+|+.+..+..+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhh
Confidence            44555557788888899999998889999999999999999  5554 33333 46799999999999999776666688


Q ss_pred             CCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142          111 SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM  156 (286)
Q Consensus       111 ~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~  156 (286)
                      .+.+|..|++.+|..+.+..|+-..+..+++|.+||.....-.+.+
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~  159 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP  159 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence            8899999999999999999999889999999999998887655544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1.2e-09  Score=93.26  Aligned_cols=134  Identities=28%  Similarity=0.350  Sum_probs=88.4

Q ss_pred             CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (286)
Q Consensus         1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~   80 (286)
                      |++||...+..-..-..+.+.+.|++.++.|+.|.                       -...|+.|+.|.|+-|+|+.+.
T Consensus         1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIs-----------------------ic~kMp~lEVLsLSvNkIssL~   57 (388)
T KOG2123|consen    1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDIS-----------------------ICEKMPLLEVLSLSVNKISSLA   57 (388)
T ss_pred             CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHH-----------------------HHHhcccceeEEeeccccccch
Confidence            77788777776655555666666666666666543                       2233444444444444444442


Q ss_pred             CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKERMEA  158 (286)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  158 (286)
                      +  +..|++|+.|+|..|.|.++.++.-+.++++|+.|+|..|+...  =+.|+...+..+|+|+.||-....-.+...+
T Consensus        58 p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A  135 (388)
T KOG2123|consen   58 P--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA  135 (388)
T ss_pred             h--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence            2  34566666666666666666555557788888888888888763  3567777899999999999887776666554


Q ss_pred             H
Q 023142          159 A  159 (286)
Q Consensus       159 ~  159 (286)
                      .
T Consensus       136 L  136 (388)
T KOG2123|consen  136 L  136 (388)
T ss_pred             H
Confidence            4

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.66  E-value=1.1e-09  Score=84.16  Aligned_cols=109  Identities=24%  Similarity=0.333  Sum_probs=74.1

Q ss_pred             cCEEeccCCCCCCCC----CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142           44 FDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS  119 (286)
Q Consensus        44 L~~L~Ls~N~l~~i~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~  119 (286)
                      +..++|+++++-.++    .+.....|+..+|++|.+..+|+.+...++.++.|++++|.|+.+|.  .+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhcc
Confidence            444556666555443    24455666667777777777776665566677777777777777776  477777777777


Q ss_pred             ecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142          120 LLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA  158 (286)
Q Consensus       120 L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  158 (286)
                      ++.|++...|.    .+..+.+|-+|+..+|.+.+++..
T Consensus       107 l~~N~l~~~p~----vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPR----VIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchH----HHHHHHhHHHhcCCCCccccCcHH
Confidence            77777777766    566677777777777777666544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=7e-09  Score=93.35  Aligned_cols=125  Identities=23%  Similarity=0.379  Sum_probs=70.7

Q ss_pred             CCCcCEEeccCCCCCCCC---CCCCCCCCCeEeccCCcCcccCCcc------ccCCCCccEEEeecCcCCCCCCCccCCC
Q 023142           41 EDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNI------GEFLPKLHTLVLTNNRLVNLVEIDPLTS  111 (286)
Q Consensus        41 l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~~~------~~~l~~L~~L~Ls~N~i~~~~~~~~l~~  111 (286)
                      +..|+.|||++|.+...+   ..+.++.|..|+++.+.|+++....      ...+++|++|++..|+|..|+.+..+..
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT  324 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence            345555666666555443   3455666666666666666542111      1245666666666666666666555555


Q ss_pred             CCCccEEEecCCcCCCCCC-chHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcc
Q 023142          112 LPKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASE  165 (286)
Q Consensus       112 l~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  165 (286)
                      +++|+.|.+-.|.+..-.. ..+..++.+++|..|+-..+...++..++..|...
T Consensus       325 l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~  379 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK  379 (505)
T ss_pred             cchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence            6666666666666653211 11124566666666666666666776666666555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.54  E-value=5.2e-08  Score=83.10  Aligned_cols=141  Identities=17%  Similarity=0.195  Sum_probs=87.2

Q ss_pred             CCcCCCCCccEEEeeCCCCc-ccc----ccccCCCCcCEEeccCCCCCCCC--C-------------CCCCCCCCeEecc
Q 023142           13 PHFFNAIKERELDLRGNKIA-VIE----NLGATEDQFDTIDLSDNEIVKLE--N-------------MPHLNRLGTLIIN   72 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~-~l~----~~~~~l~~L~~L~Ls~N~l~~i~--~-------------~~~l~~L~~L~Ls   72 (286)
                      +.+..||+|+..+||.|.|. ..|    +.++..+.|.+|.|++|.+..+.  .             ...-|.|+++.+.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            44667788888888888776 333    34556677888888888776552  1             2345677788888


Q ss_pred             CCcCcccCCc----cccCCCCccEEEeecCcCCCC--CC--CccCCCCCCccEEEecCCcCCCCCCchH-HHHhhCCCCc
Q 023142           73 NNRITRINPN----IGEFLPKLHTLVLTNNRLVNL--VE--IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLR  143 (286)
Q Consensus        73 ~N~l~~l~~~----~~~~l~~L~~L~Ls~N~i~~~--~~--~~~l~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~  143 (286)
                      .|++...+..    .+..-..|+.+-+..|.|..-  ..  +..+..+.+|+.||+.+|-++......+ .+++.++.|+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            8877765431    122224677777777776532  11  0123356778888888887774432221 2566677777


Q ss_pred             EEeCCCCChH
Q 023142          144 VLDFKKVKNK  153 (286)
Q Consensus       144 ~L~l~~n~~~  153 (286)
                      .|.+..|-++
T Consensus       246 EL~lnDClls  255 (388)
T COG5238         246 ELRLNDCLLS  255 (388)
T ss_pred             hccccchhhc
Confidence            7777777554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.52  E-value=9e-08  Score=59.59  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE   58 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~   58 (286)
                      +|++|++++|+|+.+|+.+.++++|++|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666655555666666666666655544

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.47  E-value=4.2e-09  Score=81.02  Aligned_cols=108  Identities=24%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             CccEEEeeCCCCccccccc---cCCCCcCEEeccCCCCCCCC-CC-CCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           20 KERELDLRGNKIAVIENLG---ATEDQFDTIDLSDNEIVKLE-NM-PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~---~~l~~L~~L~Ls~N~l~~i~-~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .+..++|+.|++-.+++..   .....|...+|++|.+.++| .| ...+.++.|+|++|.|+++|.. +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            4567899999888776543   44567888899999999997 45 4556899999999999999887 57999999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      +++|.|...|.  .+..+.+|-.|+..+|.+..||-
T Consensus       107 l~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  107 LRFNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             cccCccccchH--HHHHHHhHHHhcCCCCccccCcH
Confidence            99999999876  56679999999999999998876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.41  E-value=1e-07  Score=83.77  Aligned_cols=165  Identities=20%  Similarity=0.169  Sum_probs=111.7

Q ss_pred             CCCCcCEEeccCCCCC--CCCC----CCCCCCCCeEeccCCcCcccCCcc-------------ccCCCCccEEEeecCcC
Q 023142           40 TEDQFDTIDLSDNEIV--KLEN----MPHLNRLGTLIINNNRITRINPNI-------------GEFLPKLHTLVLTNNRL  100 (286)
Q Consensus        40 ~l~~L~~L~Ls~N~l~--~i~~----~~~l~~L~~L~Ls~N~l~~l~~~~-------------~~~l~~L~~L~Ls~N~i  100 (286)
                      .+++|++|+||.|.|.  .++.    +.++..|+.|+|.+|.+.-.....             ...-+.|+++..++|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4678999999999887  3332    467889999999999887543221             12346899999999988


Q ss_pred             CCCCCC---ccCCCCCCccEEEecCCcCCCCCC-chHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhc
Q 023142          101 VNLVEI---DPLTSLPKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM  176 (286)
Q Consensus       101 ~~~~~~---~~l~~l~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (286)
                      -..+..   ..|..++.|+.+.+..|.|..-.. .....+.+|++|+.||++.|.++..          ....+...+. 
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----------gs~~LakaL~-  238 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----------GSVALAKALS-  238 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----------HHHHHHHHhc-
Confidence            765531   136677899999999998874222 2233789999999999999976533          1112222111 


Q ss_pred             ccCCCCCCCCCChhhhccCCccCCCCHHHHH-----HHHHHH-HhcCCHHHHHHHHHHHh
Q 023142          177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAI-VNSQTLEEVARLEKVLK  230 (286)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-----~ip~~i-~~~~~L~~l~l~~N~l~  230 (286)
                                     .++.|..+++++..++     .+-.++ ...++|++|.+.+|.+.
T Consensus       239 ---------------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  239 ---------------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ---------------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence                           1334556666665554     555666 34699999999999986

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.37  E-value=2.4e-07  Score=92.85  Aligned_cols=105  Identities=25%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             CCCccEEEeeCCC--Ccccc-ccccCCCCcCEEeccCC-CCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           18 AIKERELDLRGNK--IAVIE-NLGATEDQFDTIDLSDN-EIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        18 l~~L~~L~Ls~n~--l~~l~-~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      +++|+.|-+.+|.  +..++ ..|..++.|++|||++| .+..+| .++.+-+|++|++++..++.+|.++ ..+..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhhe
Confidence            3445555555553  34444 22344555555555544 234455 3455555555555555555555444 35555555


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCc
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS  124 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~  124 (286)
                      |++..+.-...++ .....+++|++|.+....
T Consensus       623 Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIP-GILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ecccccccccccc-chhhhcccccEEEeeccc
Confidence            5555554222222 234445555555554433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=9.6e-08  Score=82.46  Aligned_cols=81  Identities=25%  Similarity=0.403  Sum_probs=64.3

Q ss_pred             CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCC-CC--CchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142           86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK-KP--NYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF  162 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~-ip--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  162 (286)
                      .++.+..|+|+.|+|.+|..++.+.+++.|..|.+++|++.. +.  ..++-.++++++++.|+.+...-.++..++..|
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~f  301 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRF  301 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHH
Confidence            456677788888888888877889999999999999999873 21  112236889999999999988888888888777


Q ss_pred             hcch
Q 023142          163 ASEE  166 (286)
Q Consensus       163 ~~~~  166 (286)
                      ....
T Consensus       302 VRyy  305 (418)
T KOG2982|consen  302 VRYY  305 (418)
T ss_pred             HHHH
Confidence            6655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=3.4e-07  Score=56.98  Aligned_cols=39  Identities=38%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             CCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCC
Q 023142           65 RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV  104 (286)
Q Consensus        65 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~  104 (286)
                      +|++|++++|+|+.+++. +..|++|+.|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence            455555555555555442 245555555555555555543

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.34  E-value=3.9e-07  Score=91.43  Aligned_cols=132  Identities=25%  Similarity=0.345  Sum_probs=108.9

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCC--CCCCCC--CCCCCCCCeEeccCC-cCcccCCccccC
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE--IVKLEN--MPHLNRLGTLIINNN-RITRINPNIGEF   86 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~--l~~i~~--~~~l~~L~~L~Ls~N-~l~~l~~~~~~~   86 (286)
                      .+...+....+.+.+.+|.+..++.... ++.|++|-+..|.  +..++.  |..++.|+.|+|++| .+..+|..+ +.
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~  593 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GE  593 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hh
Confidence            4455556778999999999998887665 5689999999997  677763  889999999999988 577887766 68


Q ss_pred             CCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCC
Q 023142           87 LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVK  151 (286)
Q Consensus        87 l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~  151 (286)
                      +-+|++|++++..|+.+|.  .+++++.|.+|++..+... .++.    ....+.+|++|.+....
T Consensus       594 Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhcccccCCCccccch--HHHHHHhhheeccccccccccccc----hhhhcccccEEEeeccc
Confidence            9999999999999999997  8999999999999987654 4444    56779999998886654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.33  E-value=1.7e-06  Score=66.58  Aligned_cols=120  Identities=15%  Similarity=0.263  Sum_probs=67.9

Q ss_pred             CCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ..|.++.+|+.+.+.. .+..++ ..+..+++|+.+.+..+ +..++  .|.++++++.+.+.. .+..++...|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4577888888888874 577776 56677778888888775 77665  577887888888865 677777777877888


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL  142 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L  142 (286)
                      |+.+.+..+ ++.++. ..|.++ .|+.+.+.. .+..++..   .|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~~~---~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIEEN---AFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS-------GGG-----
T ss_pred             ccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEECCc---cccccccC
Confidence            888888765 666665 577777 888888775 56666654   56666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=2.2e-06  Score=73.36  Aligned_cols=114  Identities=25%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             CCCCcCEEeccCCCCCC-CC-----CCCCCCCCCeEeccCCcCcccCCccc-------------cCCCCccEEEeecCcC
Q 023142           40 TEDQFDTIDLSDNEIVK-LE-----NMPHLNRLGTLIINNNRITRINPNIG-------------EFLPKLHTLVLTNNRL  100 (286)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~-i~-----~~~~l~~L~~L~Ls~N~l~~l~~~~~-------------~~l~~L~~L~Ls~N~i  100 (286)
                      .|++|+..+||.|.|.. .|     -+++-+.|.+|.+++|.+.-+...-.             ..-|.|+......|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            45666666666666652 22     24555666666666666554321110             1335666666666666


Q ss_pred             CCCCCC---ccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChH
Q 023142          101 VNLVEI---DPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus       101 ~~~~~~---~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      ...+..   ..+..-..|+.+.+..|.|..  +....+..+..+.+|.+||++.|.++
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            554430   012223456666677666652  22223335666777777777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=3.1e-06  Score=69.41  Aligned_cols=102  Identities=27%  Similarity=0.392  Sum_probs=80.4

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCC-CCC-CCCCCCCeEeccCCcCcccCC-ccccCCCCccEEEee
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENM-PHLNRLGTLIINNNRITRINP-NIGEFLPKLHTLVLT   96 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls   96 (286)
                      ....+||++|.+..++..- .++.|.+|.|++|+|+.| |.+ ..+++|..|.|.+|+|..+.. .-...||.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4567899999998776544 488999999999999998 455 446789999999998887643 223578999999999


Q ss_pred             cCcCCCCCC--CccCCCCCCccEEEecC
Q 023142           97 NNRLVNLVE--IDPLTSLPKLQFLSLLD  122 (286)
Q Consensus        97 ~N~i~~~~~--~~~l~~l~~L~~L~L~~  122 (286)
                      +|.++.-..  ...+..+|+|+.||+..
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            999887554  13567899999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=3.4e-07  Score=79.12  Aligned_cols=198  Identities=19%  Similarity=0.168  Sum_probs=114.5

Q ss_pred             EEEeeCCCCccccc---cccCCCCcCEEeccCCCCCCCC----CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           23 ELDLRGNKIAVIEN---LGATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        23 ~L~Ls~n~l~~l~~---~~~~l~~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      .|.+.++.|...-+   .-..++.++.+||.+|.|+.+.    -+.++|.|++|+|+.|+++......-....+|+.|-|
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            44555555543321   1234677888888888888764    2467888888888888887543322124558888888


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCC--CCchHHHHhhC-CCCcEEeCCCCChHH---HHHHHHHhhcchhHH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK--PNYRLYVIHKL-KSLRVLDFKKVKNKE---RMEAASLFASEEMEE  169 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i--p~~~~~~l~~l-~~L~~L~l~~n~~~~---~~~~~~~~~~~~~~~  169 (286)
                      .+..+..-..-..+..+|.++.|.++.|.+..+  .+.   ..... +.+++|...+|....   +......|.......
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN---CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccc---cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            887665322112466788888888888855532  111   12222 245566666664321   122223343333111


Q ss_pred             HHHh-hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 023142          170 EAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip--~~i~~~~~L~~l~l~~N~l~  230 (286)
                      .... ++..+...+.       ..+..+..|+|+.|+|....  .++.+.+.|..|.+.+|-+.
T Consensus       206 v~e~PlK~~s~ek~s-------e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGS-------EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eecCcccchhhcccC-------CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            1100 0001111111       12456778999999998444  78899999999999999885

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=5.1e-05  Score=69.49  Aligned_cols=115  Identities=21%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             CCCCccEEEeeCCCCccccccccCCCCcCEEeccC-CCCCCCCCCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEE
Q 023142           17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSD-NEIVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .+.+++.|++++|.|+.+|..   ..+|+.|.+++ +.++.+|..- .++|+.|.+++| .+..+|+       .|+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-------SVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-------ccceEE
Confidence            457889999999999998842   34689999987 5566666321 257888888887 6665543       345555


Q ss_pred             eecCc---CCCCCCCccCCC-----------------C-CCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142           95 LTNNR---LVNLVEIDPLTS-----------------L-PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        95 Ls~N~---i~~~~~~~~l~~-----------------l-~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      ++.+.   +..+|+  .+..                 + ++|++|++++|....+|..      -..+|+.|+++.+
T Consensus       119 L~~n~~~~L~~LPs--sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~------LP~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATDSIKNVPN--GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK------LPESLQSITLHIE  187 (426)
T ss_pred             eCCCCCcccccCcc--hHhheeccccccccccccccccCCcccEEEecCCCcccCccc------ccccCcEEEeccc
Confidence            55544   233332  1111                 1 3577777777776555541      1146677776655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.89  E-value=7e-06  Score=80.51  Aligned_cols=135  Identities=19%  Similarity=0.243  Sum_probs=99.5

Q ss_pred             CCccEEEeeCCCCc--ccc-ccccCCCCcCEEeccCCCCCCCC---CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           19 IKERELDLRGNKIA--VIE-NLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~--~l~-~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      .+|+.|+++|...-  ..| .....+|+|+.|.+++-.+..-.   -+.++++|..||+|+.+++.+ .++ +.+.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHH
Confidence            46888999886442  233 33356899999999987765322   357889999999999999988 444 68999999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCc---hHHHHhhCCCCcEEeCCCCChHHH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY---RLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~---~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      |.+.+=.|.....+..+-+|++|++||+|.......+..   -...-..+|.|+.||.++..+.+-
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            999888887765555677899999999998776644411   011233589999999998887543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=3.5e-05  Score=59.11  Aligned_cols=106  Identities=17%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCC
Q 023142           36 NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP  113 (286)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~  113 (286)
                      ..|.++.+|+.+.+.. .+..++  .|.++++|+.+.+..+ +..++...|..+++|+.+.+.. .+..++. ..|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccc
Confidence            4566788999999885 677775  6889999999999885 8999888998998999999965 6666766 6888999


Q ss_pred             CccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142          114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus       114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      +|+.+.+..+ +..++..   .+..+ +|+.+.+..+
T Consensus        82 ~l~~i~~~~~-~~~i~~~---~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSS---SFSNC-NLKEINIPSN  113 (129)
T ss_dssp             TECEEEETTT--BEEHTT---TTTT--T--EEE-TTB
T ss_pred             cccccccCcc-ccEEchh---hhcCC-CceEEEECCC
Confidence            9999999876 7777665   56776 8888888753

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=2.3e-05  Score=76.89  Aligned_cols=109  Identities=21%  Similarity=0.284  Sum_probs=86.9

Q ss_pred             CCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC--CccccCCCCccE
Q 023142           17 NAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHT   92 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~   92 (286)
                      .+|.|+.|.+++-.+.  .+.....++++|..||+|+.+++.+.+++.+++|+.|.+.+=.+..-.  ...| .+++|+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCe
Confidence            3789999999998876  455666789999999999999999988999999999988876666432  2556 8999999


Q ss_pred             EEeecCcCCCCCC-----CccCCCCCCccEEEecCCcCC
Q 023142           93 LVLTNNRLVNLVE-----IDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        93 L~Ls~N~i~~~~~-----~~~l~~l~~L~~L~L~~N~l~  126 (286)
                      ||+|..+....+.     +..-..||.|+.||.+++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9999987655432     122346999999999988765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00014  Score=66.59  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=54.2

Q ss_pred             CCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEEeecC-cCCCCCCCccCCCCCCccE
Q 023142           40 TEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLVLTNN-RLVNLVEIDPLTSLPKLQF  117 (286)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~l~~l~~L~~  117 (286)
                      .+.+++.|++++|.|+.+|.+.  .+|+.|.++++ .++.+|...   .++|+.|++++| .+..+|+        .|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~--------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE--------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc--------ccce
Confidence            3688999999999999888543  47999999874 676665422   358999999998 6766654        3666


Q ss_pred             EEecCCcC
Q 023142          118 LSLLDNSI  125 (286)
Q Consensus       118 L~L~~N~l  125 (286)
                      |++.++..
T Consensus       117 L~L~~n~~  124 (426)
T PRK15386        117 LEIKGSAT  124 (426)
T ss_pred             EEeCCCCC
Confidence            66766654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=5.4e-05  Score=64.43  Aligned_cols=103  Identities=23%  Similarity=0.276  Sum_probs=72.4

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCC---CCC-CCCCCCCCCeEeccCCcCcccCC-ccccCCCCccEE
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIV---KLE-NMPHLNRLGTLIINNNRITRINP-NIGEFLPKLHTL   93 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~---~i~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L   93 (286)
                      ..|+.|.+.+..++.+.+.. .+++|+.|.++.|.+.   .++ -...+++|++|++++|+|..+.. .....+.+|..|
T Consensus        43 ~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             cchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            45677777777777655443 3889999999999554   333 34566999999999999885421 112467789999


Q ss_pred             EeecCcCCCCCCC--ccCCCCCCccEEEecC
Q 023142           94 VLTNNRLVNLVEI--DPLTSLPKLQFLSLLD  122 (286)
Q Consensus        94 ~Ls~N~i~~~~~~--~~l~~l~~L~~L~L~~  122 (286)
                      ++.+|..+.+...  ..|.-+++|++|+-..
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccc
Confidence            9999987775431  1366678888887554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=5.5e-06  Score=71.82  Aligned_cols=133  Identities=14%  Similarity=0.113  Sum_probs=92.3

Q ss_pred             CCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCC-C-CCCCCCCCCCeEeccCC-cCcccC-CccccCCCCccE
Q 023142           19 IKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVK-L-ENMPHLNRLGTLIINNN-RITRIN-PNIGEFLPKLHT   92 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~-i-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~   92 (286)
                      +.|++||||...|+  .+...+..|.+|+.|.+.++++.+ | -.+....+|+.|+|+.+ .++... .-.+..|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35899999999988  566777789999999999999884 3 26788889999999876 455432 234678889999


Q ss_pred             EEeecCcCCCCCCCc-cCCC-CCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           93 LVLTNNRLVNLVEID-PLTS-LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~-~l~~-l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      |+++.+.+..-. +. .+.+ -++|+.|++++..-.-..........++|+|.+||++.|..
T Consensus       265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             cCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence            999999765321 11 1222 24688888887643211111111567888888899888754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=9.6e-06  Score=70.37  Aligned_cols=133  Identities=20%  Similarity=0.209  Sum_probs=89.8

Q ss_pred             cCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCC-CCCCCC---CCCCCCCCCeEeccCCcCcccCC--ccccCC
Q 023142           15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDN-EIVKLE---NMPHLNRLGTLIINNNRITRINP--NIGEFL   87 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l   87 (286)
                      +..|.+|+.|.+.++++. .+-..++.-.+|+.|+++.+ .|+...   -+.+|+.|..|+|+++.++.-..  .+..--
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            456788999999999988 55566777788999999875 455432   36789999999999997654211  111112


Q ss_pred             CCccEEEeecCc----CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC
Q 023142           88 PKLHTLVLTNNR----LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK  151 (286)
Q Consensus        88 ~~L~~L~Ls~N~----i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~  151 (286)
                      ++|+.|+++++.    .+.+..  ....|++|.+|||++|.--.  +..+..|..++.|++|.++.+-
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccC--chHHHHHHhcchheeeehhhhc
Confidence            478888888763    122221  24568888888888764322  2334467788888888887763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=1.7e-05  Score=68.25  Aligned_cols=83  Identities=27%  Similarity=0.288  Sum_probs=71.8

Q ss_pred             CCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142           63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL  142 (286)
Q Consensus        63 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L  142 (286)
                      +.+.+.|++-++.|++|  .++..++.|+.|.|+-|+|+.+.+   |..|++|+.|+|..|.|.++...  .-+.++|+|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL--~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDEL--EYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHH--HHHhcCchh
Confidence            45677889999999988  456789999999999999999876   88999999999999999987653  257899999


Q ss_pred             cEEeCCCCCh
Q 023142          143 RVLDFKKVKN  152 (286)
Q Consensus       143 ~~L~l~~n~~  152 (286)
                      +.|.+..|+-
T Consensus        91 r~LWL~ENPC  100 (388)
T KOG2123|consen   91 RTLWLDENPC  100 (388)
T ss_pred             hhHhhccCCc
Confidence            9999999974

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.12  E-value=0.0031  Score=32.74  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=13.9

Q ss_pred             CccEEEeeCCCCcccccccc
Q 023142           20 KERELDLRGNKIAVIENLGA   39 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~   39 (286)
                      +|++|++++|+|+.+|..++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            46777777777777775544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.89  E-value=0.0041  Score=32.30  Aligned_cols=17  Identities=29%  Similarity=0.378  Sum_probs=8.5

Q ss_pred             CCeEeccCCcCcccCCc
Q 023142           66 LGTLIINNNRITRINPN   82 (286)
Q Consensus        66 L~~L~Ls~N~l~~l~~~   82 (286)
                      |++|+|++|+|+.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.50  E-value=0.0095  Score=28.83  Aligned_cols=16  Identities=31%  Similarity=0.557  Sum_probs=6.8

Q ss_pred             CccEEEeeCCCCcccc
Q 023142           20 KERELDLRGNKIAVIE   35 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~   35 (286)
                      +|+.|++++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555666666555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.36  E-value=0.00021  Score=60.11  Aligned_cols=82  Identities=18%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             CCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142           41 EDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS  119 (286)
Q Consensus        41 l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~  119 (286)
                      +...+.||++.|++..+. .|+.++.|..|+++.|++..+|.+. .....+..+++..|..+..|.  +++..+.+++++
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~--s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPK--SQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCc--cccccCCcchhh
Confidence            444444555555444442 3444444444444444444443332 233334444444444444443  444444444444


Q ss_pred             ecCCcC
Q 023142          120 LLDNSI  125 (286)
Q Consensus       120 L~~N~l  125 (286)
                      +..|.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            444443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=95.26  E-value=0.013  Score=55.15  Aligned_cols=89  Identities=26%  Similarity=0.346  Sum_probs=62.6

Q ss_pred             CCCCCCeEeccCCcCcccCC--ccccCCCCccEEEeecC--cCCCCCCCccCCCCCCccEEEecCCcCCCCCCch----H
Q 023142           62 HLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNN--RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR----L  133 (286)
Q Consensus        62 ~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N--~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~----~  133 (286)
                      +.+.+..+.|++|++..+..  .+....|+|..|+|++|  .+.....+..+++ ..|+.|.+.+|++++--..+    -
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHH
Confidence            45677888899998877643  33345689999999999  6666555444544 45999999999998532222    2


Q ss_pred             HHHhhCCCCcEEeCCCCC
Q 023142          134 YVIHKLKSLRVLDFKKVK  151 (286)
Q Consensus       134 ~~l~~l~~L~~L~l~~n~  151 (286)
                      +.-..+|+|..||.....
T Consensus       295 ~i~~~FPKL~~LDG~ev~  312 (585)
T KOG3763|consen  295 AIRELFPKLLRLDGVEVQ  312 (585)
T ss_pred             HHHHhcchheeecCcccC
Confidence            244589999999876554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.24  E-value=0.013  Score=31.54  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=12.9

Q ss_pred             CCCCeEeccCCcCcccCCccc
Q 023142           64 NRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus        64 ~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      ++|++|+|++|+|+.+|++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666665554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.24  E-value=0.013  Score=31.54  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=12.9

Q ss_pred             CCCCeEeccCCcCcccCCccc
Q 023142           64 NRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus        64 ~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      ++|++|+|++|+|+.+|++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666665554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.19  E-value=0.00031  Score=59.13  Aligned_cols=94  Identities=18%  Similarity=0.212  Sum_probs=81.0

Q ss_pred             CCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           53 EIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        53 ~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      .++.+|  .+......+.|+++.|++..+... |+-++.|..|+++.|.|..+|.  .++.+..++.+++..|..+..|.
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~--d~~q~~e~~~~~~~~n~~~~~p~  105 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPK--DAKQQRETVNAASHKNNHSQQPK  105 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChh--hHHHHHHHHHHHhhccchhhCCc
Confidence            344555  577788999999999999888655 3678899999999999999987  78889999999999999999998


Q ss_pred             chHHHHhhCCCCcEEeCCCCChH
Q 023142          131 YRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus       131 ~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                          .+...++++++++.++.+.
T Consensus       106 ----s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 ----SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ----cccccCCcchhhhccCcch
Confidence                7999999999999999853

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.70  E-value=0.022  Score=27.55  Aligned_cols=6  Identities=50%  Similarity=0.639  Sum_probs=2.1

Q ss_pred             EeccCC
Q 023142           69 LIINNN   74 (286)
Q Consensus        69 L~Ls~N   74 (286)
                      |++++|
T Consensus         6 L~l~~n   11 (17)
T PF13504_consen    6 LDLSNN   11 (17)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            333333

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.44  E-value=0.004  Score=58.80  Aligned_cols=182  Identities=23%  Similarity=0.193  Sum_probs=101.2

Q ss_pred             ccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCCC------CCCCC-CCCCeEeccCCcCcccCC----ccc
Q 023142           21 ERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKLE------NMPHL-NRLGTLIINNNRITRINP----NIG   84 (286)
Q Consensus        21 L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~l-~~L~~L~Ls~N~l~~l~~----~~~   84 (286)
                      +..|.|.+|.+..     +-..+....+|..|++++|.+....      .+... ..+++|++..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6667777777762     2234445667777888888777321      23332 566677777777765432    122


Q ss_pred             cCCCCccEEEeecCcCCCCCC---CccCC----CCCCccEEEecCCcCCCCCCchHH-HHhhCCC-CcEEeCCCCChHHH
Q 023142           85 EFLPKLHTLVLTNNRLVNLVE---IDPLT----SLPKLQFLSLLDNSITKKPNYRLY-VIHKLKS-LRVLDFKKVKNKER  155 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~---~~~l~----~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~-L~~L~l~~n~~~~~  155 (286)
                      .....++.++++.|.+....-   ...+.    ...++++|.+.++.++........ .+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            235677777777777642110   01222    355677777777777632221111 4555555 66677777776544


Q ss_pred             H--HHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHH
Q 023142          156 M--EAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQI-----IAIKAAIVNSQTLEEVARLEKV  228 (286)
Q Consensus       156 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l-----~~ip~~i~~~~~L~~l~l~~N~  228 (286)
                      .  .....+....                           ..+..+++..|.|     ..+...+..+..++++.+..|.
T Consensus       249 g~~~L~~~l~~~~---------------------------~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  249 GVEKLLPCLSVLS---------------------------ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             HHHHHHHHhcccc---------------------------hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence            1  0011111110                           1233444444444     4677778888888888888887


Q ss_pred             H
Q 023142          229 L  229 (286)
Q Consensus       229 l  229 (286)
                      +
T Consensus       302 l  302 (478)
T KOG4308|consen  302 L  302 (478)
T ss_pred             c
Confidence            6

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.00  E-value=0.066  Score=28.72  Aligned_cols=18  Identities=33%  Similarity=0.586  Sum_probs=8.9

Q ss_pred             CCccEEEecCCcCCCCCC
Q 023142          113 PKLQFLSLLDNSITKKPN  130 (286)
Q Consensus       113 ~~L~~L~L~~N~l~~ip~  130 (286)
                      ++|++|+|++|+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.00  E-value=0.066  Score=28.72  Aligned_cols=18  Identities=33%  Similarity=0.586  Sum_probs=8.9

Q ss_pred             CCccEEEecCCcCCCCCC
Q 023142          113 PKLQFLSLLDNSITKKPN  130 (286)
Q Consensus       113 ~~L~~L~L~~N~l~~ip~  130 (286)
                      ++|++|+|++|+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.26  E-value=0.027  Score=52.68  Aligned_cols=109  Identities=23%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             CCCccEEEeeCC-CCcc--ccccccCCCCcCEEeccCC--CCCCCC-----CCCCCCCCCeEeccCCc-CcccCC-cccc
Q 023142           18 AIKERELDLRGN-KIAV--IENLGATEDQFDTIDLSDN--EIVKLE-----NMPHLNRLGTLIINNNR-ITRINP-NIGE   85 (286)
Q Consensus        18 l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N--~l~~i~-----~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~   85 (286)
                      ++.|+.|.+.++ .++.  +-.....++.|+.|+++++  .+...+     ....+.+|+.|++++.. +++..- .+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555554 3332  3333444666666666652  111111     12344666666666665 443321 1122


Q ss_pred             CCCCccEEEeecCc-CCCCCCCccCCCCCCccEEEecCCcCC
Q 023142           86 FLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~  126 (286)
                      .|++|+.|.+.++. ++...-......++.|+.|+++++...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            35566666655554 333211112334566666666655443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.40  E-value=0.27  Score=26.60  Aligned_cols=17  Identities=41%  Similarity=0.722  Sum_probs=8.6

Q ss_pred             CCcCEEeccCCCCCCCC
Q 023142           42 DQFDTIDLSDNEIVKLE   58 (286)
Q Consensus        42 ~~L~~L~Ls~N~l~~i~   58 (286)
                      .+|+.|+|++|+|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            34555555555555443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.16  E-value=0.39  Score=25.98  Aligned_cols=19  Identities=53%  Similarity=0.562  Sum_probs=16.2

Q ss_pred             CCCccEEEeeCCCCccccc
Q 023142           18 AIKERELDLRGNKIAVIEN   36 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~   36 (286)
                      +.+|+.|++++|.|+.+.+
T Consensus         1 L~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        1 LTNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CCccCEEECCCCccceecC
Confidence            4689999999999987764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.73  E-value=0.49  Score=25.53  Aligned_cols=17  Identities=18%  Similarity=0.446  Sum_probs=8.7

Q ss_pred             CccEEEeeCCCCccccc
Q 023142           20 KERELDLRGNKIAVIEN   36 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~   36 (286)
                      +|+.|++++|+++.+|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            34555555555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.92  E-value=0.3  Score=45.68  Aligned_cols=110  Identities=23%  Similarity=0.212  Sum_probs=74.6

Q ss_pred             CCCCcCEEeccCC-CCCC--C-CCCCCCCCCCeEeccCC--cCcccC---CccccCCCCccEEEeecCc-CCCCCCCccC
Q 023142           40 TEDQFDTIDLSDN-EIVK--L-ENMPHLNRLGTLIINNN--RITRIN---PNIGEFLPKLHTLVLTNNR-LVNLVEIDPL  109 (286)
Q Consensus        40 ~l~~L~~L~Ls~N-~l~~--i-~~~~~l~~L~~L~Ls~N--~l~~l~---~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~l  109 (286)
                      .++.|+.|.+... .+..  + +....++.|+.|+++++  .+...+   ......+++|+.|+++++. ++...- ..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence            3678888888776 3443  2 34578899999999873  222222   1234567899999999988 665432 233


Q ss_pred             C-CCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142          110 T-SLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus       110 ~-~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      . .|++|+.|.+.++. ++.  .........++.|+.|+++.+..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCcc
Confidence            3 38999999977766 442  22222667899999999998875

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.18  E-value=0.27  Score=40.79  Aligned_cols=85  Identities=21%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             CCCCeEeccCCcCcccCCccccCCCCccEEEeecCc-CCCCCCCccCC-CCCCccEEEecCCcCCCCCCchHHHHhhCCC
Q 023142           64 NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR-LVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVIHKLKS  141 (286)
Q Consensus        64 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~-~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~  141 (286)
                      ..++.++-++..|..+.-.-+.+++.++.|.+.++. +..+. +.-++ -.++|+.|++++|+-  |.+..+..+..+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~r--IT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPR--ITDGGLACLLKLKN  177 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCe--echhHHHHHHHhhh
Confidence            355667777777766654445677777777777763 33322 12222 346788888887752  22444446777888


Q ss_pred             CcEEeCCCCC
Q 023142          142 LRVLDFKKVK  151 (286)
Q Consensus       142 L~~L~l~~n~  151 (286)
                      |+.|.+.+-+
T Consensus       178 Lr~L~l~~l~  187 (221)
T KOG3864|consen  178 LRRLHLYDLP  187 (221)
T ss_pred             hHHHHhcCch
Confidence            8877776543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.34  E-value=0.39  Score=45.57  Aligned_cols=64  Identities=23%  Similarity=0.230  Sum_probs=43.6

Q ss_pred             cCCCCcCEEeccCCCCCCCCCC----CCCCCCCeEeccCC--cCcccCCccccCCCCccEEEeecCcCCC
Q 023142           39 ATEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNN--RITRINPNIGEFLPKLHTLVLTNNRLVN  102 (286)
Q Consensus        39 ~~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N~i~~  102 (286)
                      -+.+.+..+.|++|++..+..+    ...|+|..|+|++|  .+.....-.--+...|++|.+.+|.+..
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            3467778888899988877643    34678889999998  4544322111134468889999998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.21  E-value=0.57  Score=43.08  Aligned_cols=136  Identities=15%  Similarity=0.180  Sum_probs=92.9

Q ss_pred             CCCCccEEEeeCC-CCcc--ccccccCCCCcCEEeccCCC-CCCCC--CC-CCCCCCCeEeccCCcCccc--CCccccCC
Q 023142           17 NAIKERELDLRGN-KIAV--IENLGATEDQFDTIDLSDNE-IVKLE--NM-PHLNRLGTLIINNNRITRI--NPNIGEFL   87 (286)
Q Consensus        17 ~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~--~~-~~l~~L~~L~Ls~N~l~~l--~~~~~~~l   87 (286)
                      ++..|+.|..+++ .++.  +.....+..+|++|-++.++ |+...  .+ .+++.|+.+++.......-  -.....++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            4678999999885 4443  23455678999999999886 44332  22 5788999999988854321  12333588


Q ss_pred             CCccEEEeecCcC-CCCCCCcc----CCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           88 PKLHTLVLTNNRL-VNLVEIDP----LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        88 ~~L~~L~Ls~N~i-~~~~~~~~----l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      +.|+.|.++++.. +.. .+..    -..+..|..+.|.+.+...  +..+..+..+++|+.+++.++..-..
T Consensus       372 ~~lr~lslshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLIT--DATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             chhccCChhhhhhhhhh-hhhhhhhccccccccceeeecCCCCch--HHHHHHHhhCcccceeeeechhhhhh
Confidence            9999999998853 332 1112    2356779999999988763  33333678889999999988765433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.14  E-value=1.1  Score=41.23  Aligned_cols=134  Identities=16%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             CccEEEeeCC-CCcccc--ccccCCCCcCEEeccCCCC-CCCC--C-CCCCCCCCeEeccCCc-CcccCC-ccccCCCCc
Q 023142           20 KERELDLRGN-KIAVIE--NLGATEDQFDTIDLSDNEI-VKLE--N-MPHLNRLGTLIINNNR-ITRINP-NIGEFLPKL   90 (286)
Q Consensus        20 ~L~~L~Ls~n-~l~~l~--~~~~~l~~L~~L~Ls~N~l-~~i~--~-~~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L   90 (286)
                      .+..+++.++ .++...  ..-..+..|++|+.++..- +..+  . ..++.+|+.|-++.++ ++...- ....+++.|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence            3445555453 444332  3334577888988887643 2222  2 3567899999998884 554321 223577889


Q ss_pred             cEEEeecCcCCCCCCCc-cCCCCCCccEEEecCCcCCCCCCchHH--HHhhCCCCcEEeCCCCChH
Q 023142           91 HTLVLTNNRLVNLVEID-PLTSLPKLQFLSLLDNSITKKPNYRLY--VIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~-~l~~l~~L~~L~L~~N~l~~ip~~~~~--~l~~l~~L~~L~l~~n~~~  153 (286)
                      +.+++..+.......+. .-.+|+.|+.+.++++........+..  .-..+..|..+-+.+.+..
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            99998887543222211 233688899999987654432211110  2345667888888888754

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.69  E-value=0.8  Score=23.83  Aligned_cols=14  Identities=50%  Similarity=0.586  Sum_probs=6.4

Q ss_pred             CCCCeEeccCCcCc
Q 023142           64 NRLGTLIINNNRIT   77 (286)
Q Consensus        64 ~~L~~L~Ls~N~l~   77 (286)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45555555555554

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
1a9n_A	176	Crystal Structure Of The Spliceosomal U2b''-U2a' Pr		2e-30

>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein Complex Bound To A Fragment Of U2 Small Nuclear Rna Length = 176

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 91/155 (58%)
Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61  PHXXXXXXXXXXXXXXXXXXXXXXEFLPKXXXXXXXXXXXXXXXEIDPLTSLPKLQFLSL 120
           P                       + LP                ++DPL SL  L +L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155
           L N +T K +YRLYVI+K+  +RVLDF+KVK KER
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-04

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score =  192 bits (491), Expect = 5e-62
 Identities = 96/177 (54%), Positives = 125/177 (70%), Gaps = 1/177 (0%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM 60
           MV+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120
           P L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 121 LDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK 177
           L N +T K +YRLYVI+K+  +RVLDF+KVK KER EA  +F  +    +  K+  +
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKR-GAQLAKDIAR 176

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score =  156 bits (396), Expect = 8e-48
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 3/156 (1%)

Query: 3   RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH 62
           R+  +L  ++P    A++E  LD   +    IE L A     + + L +  ++ + N+P 
Sbjct: 13  RIHLELRNRTP---AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK 69

Query: 63  LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122
           L +L  L ++ NRI      + E LP L  L L+ N+L ++  ++PL  L  L+ L L +
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 123 NSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA 158
             +T   +YR  V   L  L  LD    +++E  ++
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score =  144 bits (365), Expect = 2e-43
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 3   RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH 62
           R+  +L  ++P   + +KE  LD   +    +E L    ++ + +   +  +  + N+P 
Sbjct: 6   RIHLELRNRTP---SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK 62

Query: 63  LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122
           LN+L  L +++NR++     + E  P L  L L+ N++ +L  I+PL  L  L+ L L +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 123 NSITKKPNYRLYVIHKLKSLRVLD 146
             +T   +YR  V   L  L  LD
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYLD 146

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 42/149 (28%), Positives = 60/149 (40%), Gaps = 31/149 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           R L L  N I  IENL A  D  + + +S N+I  L  +                     
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEK------------------- 113

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK-------PNYRLY 134
                L  L  L ++NN++ N  EID L +L KL+ L L  N +            YR+ 
Sbjct: 114 -----LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

Query: 135 VIHKLKSLRVLDFKKVKNKERMEAASLFA 163
           V+ +L +L+ LD   V   ER +A     
Sbjct: 169 VVKRLPNLKKLDGMPVDVDEREQANVARG 197

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 94.8 bits (235), Expect = 4e-22
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 16  FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNN 74
                 R L L    + V+ +L         +DLS N +  L   +  L  L  L  ++N
Sbjct: 438 MEYADVRVLHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            +  +   +   LP+L  L+L NNRL     I PL S P+L  L+L  NS+ ++   +  
Sbjct: 497 ALENV-DGVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554

Query: 135 VIHKLKSLRVLD 146
           +   L S+  + 
Sbjct: 555 LAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 9e-07
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 29  NKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP 88
              + ++ +      +     S   +           +  L + +  +T +  ++ E L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHL-EQLL 463

Query: 89  KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +  L L++NRL  L     L +L  L+ L   DN++          +  L  L+ L 
Sbjct: 464 LVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDG-----VANLPRLQELL 514

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            EL +  N++  +  + +       + L +NE+   +++ HL  L  L I NN++  I  
Sbjct: 88  EELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM 145

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
               FL KL  L L  N + N      LT L K+ ++ L       +P      ++   +
Sbjct: 146 L--GFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 142 LRVLDFKKVKNKE 154
           ++  D + +    
Sbjct: 201 VKDPDGRWISPYY 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           +  +   + I  +  +         + LS N+I  L  +  L +L  L +N NR+  +N 
Sbjct: 44  QNFNGDNSNIQSLAGMQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG 102

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                   L  L L NN L +    D L  L  L+ LS+ +N +       + ++  L  
Sbjct: 103 ---IPSACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKS-----IVMLGFLSK 151

Query: 142 LRVLD 146
           L VLD
Sbjct: 152 LEVLD 156

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L +R NK+  I  LG    + + +DL  NEI     +  L ++  + +   +      
Sbjct: 131 EILSIRNNKLKSIVMLGFL-SKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPV 189

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEI 106
                L   +T+   + R ++   I
Sbjct: 190 KYQPELYITNTVKDPDGRWISPYYI 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP----HLNRLGTLII 71
             L+L  NK+  + +       FD       + LS N +               L  L +
Sbjct: 31  TRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           + N +  ++ N    L +L  L   ++ L  + E     SL  L +L +         N 
Sbjct: 86  SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 132 RLYVIHKLKSLRVLD 146
                + L SL VL 
Sbjct: 145 IF---NGLSSLEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP---HLNRLGT 68
           S   F     + LDL  N +  + +     +Q + +D   + + ++        L  L  
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L I++         I   L  L  L +  N        D  T L  L FL L    + + 
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 129 PNYRLYVIHKLKSLRVLD 146
                   + L SL+VL+
Sbjct: 191 SP---TAFNSLSSLQVLN 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDN---EIVKLENMPHLNRLGTLIIN 72
             LD+      V  N       F+       + ++ N   E    +    L  L  L ++
Sbjct: 129 IYLDISHTHTRVAFN-----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
             ++ +++P     L  L  L +++N   +L +  P   L  LQ L    N I       
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 133 LYVIHKLKSLRVLD 146
           L   H   SL  L+
Sbjct: 243 LQ--HFPSSLAFLN 254

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 45  DTIDLSDNEIVKLENMPH--LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
             I  +      L ++P    +    L + +N++  +   + + L +L  L L++N L +
Sbjct: 10  TEIRCNSK---GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-S 65

Query: 103 LVEIDPLT--SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
                  +      L++L L  N +    +        L+ L  LDF
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHLDF 108

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L L  N I+ I  L     Q +++ L +N+I  +  +  L +L TL + +N+I+ I P
Sbjct: 115 KSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L KL  L L+ N + +   +  L  L  L  L L       KP      +    +
Sbjct: 174 --LAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 142 LRVLDFKKVK 151
           ++  D   V 
Sbjct: 229 VKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           +  + +L+   +          +  D I  ++++I  ++ + +L  +  L +N N++T I
Sbjct: 25  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 83

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P     L  L  L L  N++ +   +  L  L KL+ LSL  N I+         +  L
Sbjct: 84  KPL--ANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGISDING-----LVHL 133

Query: 140 KSLRVLD 146
             L  L 
Sbjct: 134 PQLESLY 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  N+I+ I  L     +   + LS N I  L  +  L  L  L + +        
Sbjct: 159 DTLSLEDNQISDIVPLAGLT-KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           N    L   +T+  T+  LV    I       K      L     + 
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
                I ++ +           +    +T         L  +  ++  N+   ++  +  
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS---DIKSVQG 63

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           +  LP +  L L  N +T      +  +  LK+L  L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTD-----IKPLANLKNLGWLFL 97

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENMPH----LNRLGTLIINNNR 75
             L ++GN   +    G  E+      +DLS ++I   +        L+ L +L ++ N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
              +     +  P+L  L L   RL       P  +L  L+ L+L  + +         +
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QL 444

Query: 136 IHKLKSLRVLD 146
              L +L+ L+
Sbjct: 445 FDGLPALQHLN 455

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN-MPHLNRLGTLIINNN 74
             ++L+ +    I       + F        +DL+   + +L + +  L+ L  L+++ N
Sbjct: 257 ESINLQKHYFFNIS-----SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
           +   +        P L  L +  N     +    L +L  L+ L L  + I       L 
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL- 370

Query: 135 VIHKLKSLRVLDF 147
            +  L  L+ L+ 
Sbjct: 371 QLRNLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L+   N +  I+N       F        +DL+  +I  +        +RL TL++  
Sbjct: 36  ECLEFSFNVLPTIQN-----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  +          L  L      + ++    PL +   L+ L L  N I+      L
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIK---L 146

Query: 134 YVIHKLKSLRVLDF 147
                 + L+VLDF
Sbjct: 147 PKGFPTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
           + L+L  + + +          FD       ++L  N   K           L RL  L+
Sbjct: 428 KVLNLSHSLLDISSE-----QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           ++   ++ I+ +    L  ++ + L++NRL +    + L+ L  +  L+L  N I+    
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGIY-LNLASNHISIIL- 539

Query: 131 YRLYVIHKLKSLRVLD 146
               ++  L   R ++
Sbjct: 540 --PSLLPILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 19/148 (12%)

Query: 12  SPHFFNAIKE-RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLE-----NM 60
                +  K    L L  N I+ I+          +     +D  +N I  L      ++
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK----VLDFQNNAIHYLSKEDMSSL 176

Query: 61  PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLS 119
                L +L +N N I  I P   +      +L     + L+ + +    +++  L   +
Sbjct: 177 QQATNL-SLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLDF 147
             D             + ++ S+  ++ 
Sbjct: 235 FEDMDDEDISPAVFEGLCEM-SVESINL 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 35/167 (20%)

Query: 11  KSPHFFNAIKERELDLRGNKIAVIENL---GATEDQFDTIDLSDNEIVKLE-NMPHLNRL 66
           K P  F   K + LD + N I  +         +    +++L+ N+I  +E         
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 67  GTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNL--------------------- 103
            +L     +   +     +   +  L      +    ++                     
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 104 ----VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               +  +       LQ L L    +++ P+     +  L +L+ L 
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSG----LVGLSTLKKLV 307

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 34/149 (22%)

Query: 6   ADLIWKSPHFFNAIKE-RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL- 57
                +  +    +     L L    ++ I      +  F        +DLS N +    
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-----DQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 58  -ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL---------------- 100
            E + HL  +  L + +N I+ I P++   L +  T+ L  N L                
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575

Query: 101 -VNLVEIDPLT--SLPKLQFLSLLDNSIT 126
              L + +     + P L+ + L D +++
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 20/134 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L L  N I  IE  GA    F+      T++L DN +  + N    +L++L  L + N
Sbjct: 91  EILQLSRNHIRTIEI-GA----FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 74  NRITRINPNIGEFLPKLHTLVLT-NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           N I  I       +P L  L L    RL  +        L  L++L+L   ++ + PN  
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLREIPN-- 202

Query: 133 LYVIHKLKSLRVLD 146
              +  L  L  LD
Sbjct: 203 ---LTPLIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 8e-16
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 16/133 (12%)

Query: 22  RELDL-RGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNN 74
           R LDL    +++ I      E  F+       ++L+   + ++ N+  L +L  L ++ N
Sbjct: 163 RRLDLGELKRLSYIS-----EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            ++ I P   + L  L  L +  +++   +E +   +L  L  ++L  N++T  P+    
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPH---D 273

Query: 135 VIHKLKSLRVLDF 147
           +   L  L  +  
Sbjct: 274 LFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 7e-14
 Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 20/141 (14%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSD-NEIVKLENM--PHLNR 65
           F    K +EL LR N I  I         F+       +DL +   +  +       L+ 
Sbjct: 132 FVYLSKLKELWLRNNPIESIP-----SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L +    +  I       L KL  L L+ N L  +        L  LQ L ++ + I
Sbjct: 187 LRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQI 243

Query: 126 TKKPNYRLYVIHKLKSLRVLD 146
                        L+SL  ++
Sbjct: 244 QVIER---NAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRI 79
           R L+L    +  I NL     + D +DLS N +  +       L  L  L +  ++I  I
Sbjct: 188 RYLNLAMCNLREIPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
             N  + L  L  + L +N L  L   D  T L  L+ + L  N  
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 25/125 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           R L+L  N+I +I+      + F                 HL  L  L ++ N I  I  
Sbjct: 67  RLLNLHENQIQIIK-----VNSFK----------------HLRHLEILQLSRNHIRTIEI 105

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  L+TL L +NRL  +        L KL+ L L +N I   P+   Y  +++ S
Sbjct: 106 GAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPS---YAFNRIPS 161

Query: 142 LRVLD 146
           LR LD
Sbjct: 162 LRRLD 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLN 64
           P+    IK  ELDL GN ++ I         F        + +  ++I  +E     +L 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIR-----PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
            L  + + +N +T +  ++   L  L  + L +N
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 3e-16
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N +  + +       F        +DLS  EI  +E+     L+ L TLI+  
Sbjct: 31  KNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  +       L  L  LV     L +L E  P+  L  L+ L++  N I        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPE- 143

Query: 134 YVIHKLKSLRVLD 146
                L +L  LD
Sbjct: 144 -YFSNLTNLEHLD 155

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
           + LDL   +I  IE     +  +       T+ L+ N    ++++       L+ L  L+
Sbjct: 55  QVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGN---PIQSLALGAFSGLSSLQKLV 106

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
                +  +       L  L  L + +N + +    +  ++L  L+ L L  N I     
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 131 YRLYVIHKLKSLR 143
             L V+H++  L 
Sbjct: 167 TDLRVLHQMPLLN 179

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLE-----NMPHLNRLG-TL 69
           +EL++  N I   +        F        +DLS N+I  +       +  +  L  +L
Sbjct: 127 KELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            ++ N +  I P   + + +L  L L  N+L ++ +      L  LQ + L  N
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 27/140 (19%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENM---PHLNRLGTLIINN 73
           ++L      +A +E     +L   +     ++++ N I   +      +L  L  L +++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLK----ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP-------KLQFLSLLDNSIT 126
           N+I  I       L ++  L L+ +  +N     P+  +        +L+ L+L  N + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-----PMNFIQPGAFKEIRLKELALDTNQLK 213

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
             P+    +  +L SL+ + 
Sbjct: 214 SVPD---GIFDRLTSLQKIW 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 5e-16
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 20/134 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L L  N I  IE  GA    F+      T++L DN +  + +    +L++L  L + N
Sbjct: 102 EVLQLGRNSIRQIEV-GA----FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 74  NRITRINPNIGEFLPKLHTLVLT-NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           N I  I       +P L  L L    +L  +        L  L++L+L   +I   PN  
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIKDMPNLT 215

Query: 133 LYVIHKLKSLRVLD 146
                 L  L  L+
Sbjct: 216 -----PLVGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 16/133 (12%)

Query: 22  RELDL-RGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNN 74
             LDL    K+  I      E  F+       ++L    I  + N+  L  L  L ++ N
Sbjct: 174 MRLDLGELKKLEYIS-----EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
               I P     L  L  L + N+++   +E +    L  L  L+L  N+++  P+    
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPH---D 284

Query: 135 VIHKLKSLRVLDF 147
           +   L+ L  L  
Sbjct: 285 LFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRI 79
           + L+L    I  + NL       + +++S N   ++       L+ L  L + N++++ I
Sbjct: 199 KYLNLGMCNIKDMPNLTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
             N  + L  L  L L +N L +L   D  T L  L  L L  N  
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 24/143 (16%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSD-NEIVKLENM--PHLNR 65
           F    K REL LR N I  I         F+       +DL +  ++  +       L  
Sbjct: 143 FEYLSKLRELWLRNNPIESIP-----SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 66  LGTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           L  L +    I  +         L  L  L ++ N    +        L  L+ L ++++
Sbjct: 198 LKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNS 252

Query: 124 SITKKPNYRLYVIHKLKSLRVLD 146
            ++            L SL  L+
Sbjct: 253 QVSLIER---NAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 29/127 (22%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           R L+L  N I +I+      D F                 HL+ L  L +  N I +I  
Sbjct: 78  RYLNLMENNIQMIQ-----ADTFR----------------HLHHLEVLQLGRNSIRQIEV 116

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
                L  L+TL L +N    L  I       L KL+ L L +N I   P+   Y  +++
Sbjct: 117 GAFNGLASLNTLELFDNW---LTVIPSGAFEYLSKLRELWLRNNPIESIPS---YAFNRV 170

Query: 140 KSLRVLD 146
            SL  LD
Sbjct: 171 PSLMRLD 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLN 64
           P+    +   EL++ GN    I         F        + + ++++  +E      L 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-----PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
            L  L + +N ++ +  ++   L  L  L L +N
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 9e-16
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           R LDL  N+I  +      +D+F        ++L++N +  +E     +L  L TL + +
Sbjct: 35  RLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           NR+  I   +   L  L  L ++ N++V L        L  L+ L + DN +    +   
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISH--- 145

Query: 134 YVIHKLKSLRVLD 146
                L SL  L 
Sbjct: 146 RAFSGLNSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HL 63
           +P+    +    L +    +  +                  ++LS N I  +E      L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVP-----YLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 64  NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            RL  + +   ++  + P     L  L  L ++ N+L  L E     S+  L+ L L  N
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSN 330

Query: 124 SI 125
            +
Sbjct: 331 PL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
            +LD+  NKI ++ +       F       ++++ DN++V + +     LN L  L +  
Sbjct: 107 TKLDISENKIVILLD-----YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
             +T I       L  L  L L +  +  +        L +L+ L +             
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 134 YVIHKLKSLR 143
                L SL 
Sbjct: 221 LYGLNLTSLS 230

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 14  HFFNAIKERELDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLENM--PHLNRLGTLI 70
            F    + + L++                    ++ ++   +  +  +   HL  L  L 
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           ++ N I+ I  ++   L +L  + L   +L  + E      L  L+ L++  N +T    
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEE 313

Query: 131 YRLYVIHKLKSLRVLDF 147
               V H + +L  L  
Sbjct: 314 ---SVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 16/131 (12%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
            +L L    +  I      +L         + L    I  + +     L RL  L I++ 
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLI----VLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYR 132
                      +   L +L +T+    NL  +    +  L  L+FL+L  N I+      
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 133 LYVIHKLKSLR 143
           L+ + +L+ ++
Sbjct: 268 LHELLRLQEIQ 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           R L+L  N I+ IE                 I L   ++  +E      LN L  L ++ 
Sbjct: 251 RFLNLSYNPISTIEG-----SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLV 101
           N++T +  ++   +  L TL+L +N L 
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L L  N +  I +  A    F        +DLS N +  L+      L  L  L++ N
Sbjct: 67  HSLLLSHNHLNFISS-EA----FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDNSITKKPNY 131
           N I  ++ N  E + +L  L L+ N++       I     LPKL  L L  N + K P  
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 132 RLYVIHKLKSLRV 144
            L  +       +
Sbjct: 182 DLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 4e-14
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             LDL  N ++ +                 ++ LS N +  + +     +  L  L +++
Sbjct: 42  ALLDLSHNNLSRLRAEWT----PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  ++  +   L  L  L+L NN +V + + +    + +LQ L L  N I++ P   +
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 134 YVIHKLKSLRVLD 146
              +KL  L +LD
Sbjct: 157 KDGNKLPKLMLLD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  N+I  I  L +            N+I  +  + ++ RL +L I NN+IT ++P
Sbjct: 180 YSLSLNYNQIEDISPLASLT-SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +   L +L  L +  N++ +   I+ +  L KL+ L++  N I+         ++ L  
Sbjct: 239 -LAN-LSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISDISV-----LNNLSQ 288

Query: 142 LRVLD 146
           L  L 
Sbjct: 289 LNSLF 293

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 7e-15
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
                  N+I  I  +     + +++ + +N+I  L  + +L++L  L I  N+I+ I  
Sbjct: 202 HYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-N 259

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            + + L KL  L + +N++ +   I  L +L +L  L L +N +  +    + VI  L +
Sbjct: 260 AVKD-LTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTN 312

Query: 142 LRVLDF 147
           L  L  
Sbjct: 313 LTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L +  NKI  I  L         + L+++ I  +  + +L ++ +L +  N       
Sbjct: 91  TNLYIGTNKITDISALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +   +  L+ L +T +++ +   + P+ +L  L  LSL  N I          +  L S
Sbjct: 150 PLSN-MTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDISP-----LASLTS 200

Query: 142 LRVLD 146
           L    
Sbjct: 201 LHYFT 205

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L +  NKI  +  L     Q   +++  N+I  +  +  L +L  L + +N+I+ I  
Sbjct: 224 NSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-S 281

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +   L +L++L L NN+L N  +++ +  L  L  L L  N IT         +  L  
Sbjct: 282 VLNN-LSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSK 334

Query: 142 LRVLDF 147
           +   DF
Sbjct: 335 MDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           +     L+   +  +      E     + ++  ++  ++ + +L  L  L +N N+IT I
Sbjct: 23  EGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI 81

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
           +P     L KL  L +  N++ +   I  L +L  L+ L L +++I+         +  L
Sbjct: 82  SPL--SNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDISP-----LANL 131

Query: 140 KSLRVLD 146
             +  L+
Sbjct: 132 TKMYSLN 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 5e-14
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L++  N+I+ I  +     +   +++  N+I  +  + +L++L +L +NNN++   + 
Sbjct: 246 TWLEIGTNQISDINAVKDLT-KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            +   L  L TL L+ N + +   I PL SL K+      +  I K
Sbjct: 305 EVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 9e-14
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 23  ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82
            L      I  I        +     L    +  +     L  +  L++   ++  I   
Sbjct: 4   TLATLPAPINQIFPDADLA-EGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI 62

Query: 83  IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142
             E+L  L  L L  N++ +   I PL++L KL  L +  N IT         +  L +L
Sbjct: 63  --EYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISA-----LQNLTNL 112

Query: 143 RVLDF 147
           R L  
Sbjct: 113 RELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 22  RELDLRGNK----IAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRIT 77
             L+L  N     ++ + N+         + ++++++  +  + +L  L +L +N N+I 
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLN----YLTVTESKVKDVTPIANLTDLYSLSLNYNQIE 190

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH 137
            I   +   L  LH      N++ +   I P+ ++ +L  L + +N IT         + 
Sbjct: 191 DI-SPLAS-LTSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNNKITDLSP-----LA 240

Query: 138 KLKSLRVLD 146
            L  L  L+
Sbjct: 241 NLSQLTWLE 249

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 22/143 (15%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HL 63
           F        L L  N +A I+   A    F        +DLSDN   +L ++       L
Sbjct: 52  FRACRNLTILWLHSNVLARIDA-AA----FTGLALLEQLDLSDNA--QLRSVDPATFHGL 104

Query: 64  NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            RL TL ++   +  + P +   L  L  L L +N L  L   D    L  L  L L  N
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGN 163

Query: 124 SITKKPNYRLYVIHKLKSLRVLD 146
            I+  P         L SL  L 
Sbjct: 164 RISSVPE---RAFRGLHSLDRLL 183

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L L    +  +         F        + L DN +  L +     L  L  L ++ 
Sbjct: 108 HTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           NRI+ +       L  L  L+L  NR+ ++        L +L  L L  N+++  P    
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPT--- 218

Query: 134 YVIHKLKSLRVLDF 147
             +  L++L+ L  
Sbjct: 219 EALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + L L+ N +  +      +D F        + L  N I  +       L+ L  L+++ 
Sbjct: 132 QYLYLQDNALQALP-----DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           NR+  ++P+    L +L TL L  N L  L   + L  L  LQ+L L DN
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 46  TIDLSDNEIVKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            I L  N I  +          L  L +++N + RI+      L  L  L L++N  +  
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           V+      L +L  L L    + +       +   L +L+ L 
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGP---GLFRGLAALQYLY 135

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  NKI  + +L     +  ++ L  N I  +  + HL +L +L + NN+IT I  
Sbjct: 90  GWLFLDENKIKDLSSLKDL-KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV 148

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L KL TL L +N++ +   I PL  L KLQ L L  N I+      L  +  LK+
Sbjct: 149 L--SRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHISD-----LRALAGLKN 198

Query: 142 LRVLDF 147
           L VL+ 
Sbjct: 199 LDVLEL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 6e-15
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           +  + +L+   +          +  D I  ++++I  ++ + +L  +  L +N N++T I
Sbjct: 22  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 80

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P     L  L  L L  N++ +   +  L  L KL+ LSL  N I+         +  L
Sbjct: 81  KPL--TNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHNGISDING-----LVHL 130

Query: 140 KSLRVLD 146
             L  L 
Sbjct: 131 PQLESLY 137

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 3e-12
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 11/125 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            E       I  I    A   +    +L    +        LN +  +I NN+ I  +  
Sbjct: 2   GETITVSTPIKQIFPDDAFA-ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
              ++LP +  L L  N+L +   I PLT+L  L +L L +N I    +     +  LK 
Sbjct: 61  I--QYLPNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKK 110

Query: 142 LRVLD 146
           L+ L 
Sbjct: 111 LKSLS 115

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
                I ++             +    +T         L  +  ++  N+   ++  +  
Sbjct: 6   TVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS---DIKSVQG 60

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149
           +  LP +  L L  N +T      +  +  LK+L  L   +
Sbjct: 61  IQYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDE 96

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 33/198 (16%), Positives = 57/198 (28%), Gaps = 2/198 (1%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L L  N+I+ I  L A   +   + LS N I  L  +  L  L  L + +        
Sbjct: 156 DTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           N    L   +T+  T+  LV    I       K      L     +  ++  Y    +  
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV-SFIFYQPVTIGK 273

Query: 142 LRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAP 201
            +     +V    +      +  +    + K E+   +   + P       +        
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNG 333

Query: 202 TPEQIIAIKAAIVNSQTL 219
             E          N  TL
Sbjct: 334 GHEWNFNTDYMSGNDFTL 351

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           +G  I  +  I +I P+  +   +     L      ++ +      L  +  +   ++ I
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDI 55

Query: 126 TKKPNYRLYVIHKLKSLRVLDF 147
                     I  L ++  L  
Sbjct: 56  KSVQG-----IQYLPNVTKLFL 72

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.4 bits (178), Expect = 6e-15
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            EL+L GN +  +  + A      T+DL+  +I  +  +  L+ L  L ++ N+IT I+P
Sbjct: 88  TELELSGNPLKNVSAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP 146

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  L  L + N ++ +   + PL +L KL  L   DN I+      +  +  L +
Sbjct: 147 L--AGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNKISD-----ISPLASLPN 196

Query: 142 LRVLDF 147
           L  +  
Sbjct: 197 LIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L   G  +  IE +         ++L DN+I  L  + +L ++  L ++ N +  ++ 
Sbjct: 44  TTLSAFGTGVTTIEGVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
             G  L  + TL LT+ ++ +   + PL  L  LQ L L  N IT         +  L +
Sbjct: 103 IAG--LQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQITNISP-----LAGLTN 152

Query: 142 LRVLDF 147
           L+ L  
Sbjct: 153 LQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L L  N+I  I  L         + + + ++  L  + +L++L TL  ++N+I+ I+P
Sbjct: 132 QVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                LP L  + L NN++ +   + PL +   L  ++L + +IT +P +    +     
Sbjct: 191 LAS--LPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 142 LRVLDFKKVKNKE 154
           ++      +    
Sbjct: 246 VKGPSGAPIAPAT 258

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 29  NKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP 88
             I VI    A       I    + +        L+ + TL      +T I     ++L 
Sbjct: 7   TAINVIFPDPALA-NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGV--QYLN 63

Query: 89  KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            L  L L +N++ +   + PL +L K+  L L  N +          I  L+S++ LD 
Sbjct: 64  NLIGLELKDNQITD---LAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDL 114

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 10/99 (10%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
                I  +   P L     +    + +T         L  + TL      +     I+ 
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT---IEG 58

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           +  L  L  L L DN IT         +  L  +  L+ 
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP-----LKNLTKITELEL 92

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L    NKI+ I  L +       + L +N+I  +  + + + L  + + N  IT    
Sbjct: 176 TTLKADDNKISDISPLASLP-NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
               +   L    +        +    ++        +L  N  +   N
Sbjct: 235 F---YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.8 bits (179), Expect = 8e-15
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            ELD   N I V+        +   + L  N +     + +   L  + ++ N + +I  
Sbjct: 208 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           +    + +L  L ++NNRLV L        +P L+ L L  N +            +   
Sbjct: 266 HPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 319

Query: 142 LRVLD 146
           L  L 
Sbjct: 320 LENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 20/133 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
             L+L   +I  I+        F        + +  N I  L      ++  L  L++  
Sbjct: 72  ELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N ++ +   I    PKL TL ++NN L  + E D   +   LQ L L  N +T       
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVD---- 181

Query: 134 YVIHKLKSLRVLD 146
             +  + SL   +
Sbjct: 182 --LSLIPSLFHAN 192

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + +  + + +  +          D       ++L+D +I +++     + + +  L +  
Sbjct: 48  KIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  + P++ + +P L  LVL  N L +L       + PKL  LS+ +N++ +  +   
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIED--- 158

Query: 134 YVIHKLKSLRVLD 146
                  SL+ L 
Sbjct: 159 DTFQATTSLQNLQ 171

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPHLNRLGTLIINNNRITR 78
           + L L  N++  ++               ++S N +  L     +     L  ++N I  
Sbjct: 168 QNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVE---ELDASHNSINV 219

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
           +   +     +L  L L +N    L +   L + P L  + L  N + K   +      K
Sbjct: 220 VRGPV---NVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNELEKIMYHPF---VK 270

Query: 139 LKSLRVLD 146
           ++ L  L 
Sbjct: 271 MQRLERLY 278

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRIN 80
             L +  N++  +   G        +DLS N ++ +E N P  +RL  L +++N I  + 
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPK-LQFLSLLDNSITKKPNYRL 133
            +       L  L L++N        + L +L + +   ++ D     K +Y+L
Sbjct: 335 LST---HHTLKNLTLSHNDWDC----NSLRALFRNVARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 47  IDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI 106
           ID+   ++        LN    +   N+ + ++   + +   ++  L L + ++  + + 
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DT 86

Query: 107 DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                   +Q L +  N+I   P    +V   +  L VL 
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLV 123

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
           N+ +      + I+              L     +   N+ +  L     L S  +++ L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELL 74

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           +L D  I +      Y      +++ L 
Sbjct: 75  NLNDLQIEEIDT---YAFAYAHTIQKLY 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 8e-15
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N +  + +       F        +DLS  EI  +E+     L+ L TLI+  
Sbjct: 31  KNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  +       L  L  LV     L +L E  P+  L  L+ L++  N I        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK--LP 142

Query: 134 YVIHKLKSLRVLDF 147
                L +L  LD 
Sbjct: 143 EYFSNLTNLEHLDL 156

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 11  KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM---PHLNRLG 67
            S   F     + LDL  N +  + +     +Q + +D   + + ++        L  L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            L I++         I   L  L  L +  N        D  T L  L FL L    + +
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 128 KPNYRLYVIHKLKSLRVLD 146
                    + L SL+VL+
Sbjct: 485 LSP---TAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 10/149 (6%)

Query: 4   LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKL-EN 59
            T++    +    +      LDL  N ++       ++        +DLS N ++ +  N
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 60  MPHLNRLGTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
              L +L  L   ++ + ++      F  L  L  L +++              L  L+ 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEV 449

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L +  NS  +       +  +L++L  LD
Sbjct: 450 LKMAGNSFQENFLPD--IFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHL 63
           S +F    +   LD + + +  +         F        +D+S        N     L
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 64  NRLGTLIINNNRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122
           + L  L +  N       P+I   L  L  L L+  +L  L       SL  LQ L++  
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMAS 503

Query: 123 NSITKKPNYRLYVIHKLKSLRVLD 146
           N +   P+    +  +L SL+ + 
Sbjct: 504 NQLKSVPD---GIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 8/140 (5%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I +   F      + L+L   K      L         +  + N+     +   L  L  
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 69  LIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           L ++ N ++              L  L L+ N ++ +        L +L+ L    +++ 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLK 409

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
           +   +   V   L++L  LD
Sbjct: 410 QMSEF--SVFLSLRNLIYLD 427

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
           + LDL   +I  IE     +  +       T+ L+ N I  L       L+ L  L+   
Sbjct: 55  QVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
             +  +       L  L  L + +N + +    +  ++L  L+ L L  N I       L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 134 YVIHKLKSLRV 144
            V+H++  L +
Sbjct: 170 RVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 15/113 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---ENMPHLNRLGTLIIN 72
             LD+      V  N       F+       + ++ N   +    +    L  L  L ++
Sbjct: 424 IYLDISHTHTRVAFN-----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
             ++ +++P     L  L  L + +N+L ++        L  LQ + L  N  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLE-----NMPHLNRLG-TLIINN 73
           +EL++  N I   +      +    + +DLS N+I  +       +  +  L  +L ++ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +  I P   + + +LH L L NN     V    +  L  L+   L+      + N   
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 134 YVIHKLKSLRVLDFK 148
           +    L+ L  L  +
Sbjct: 246 FDKSALEGLCNLTIE 260

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 22/138 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---ENMPHLNRLGTLIIN 72
           ++L      +A +EN                ++++ N I      E   +L  L  L ++
Sbjct: 103 QKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 73  NNRITRINPNIGEFLPKLH----TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           +N+I  I       L ++     +L L+ N + N ++      + +L  L+L +N  +  
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEI-RLHKLTLRNNFDS-- 213

Query: 129 PNYRLYVIHKLKSLRVLD 146
            N     I  L  L V  
Sbjct: 214 LNVMKTCIQGLAGLEVHR 231

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 12/158 (7%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENMP-H 62
                +F N      LDL  NKI  I       L        ++DLS N +  ++     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 63  LNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEI-----DPLTSLPKLQ 116
             RL  L + NN  +  +     + L  L    L      N   +       L  L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154
                   +    +  + + + L ++       V  + 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 23/137 (16%), Positives = 41/137 (29%), Gaps = 11/137 (8%)

Query: 14  HFFNAIKERELDLRGNKIAVIENLGATEDQF----DTIDLSDNEIVKLENMPHLNRLGTL 69
                      + R   +    +             +  L    I ++++  +      L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129
            + N +  +        L  L  L  T+N+  N         LP L+FL L  N ++ K 
Sbjct: 310 ELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 130 NYRLYVIHKLKSLRVLD 146
                      SL+ LD
Sbjct: 364 CCSQ-SDFGTTSLKYLD 379

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 18/137 (13%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLII 71
            P  F  I+  +L LR N                ++++    I  L  +     +     
Sbjct: 193 QPGAFKEIRLHKLTLRNNFD--------------SLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRL--VNLVEIDPLTSLPKLQFLSLLDNSITKKP 129
           N   + + + +  E L  L         L       ID    L  +   SL+  +I +  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 130 NYRLYVIHKLKSLRVLD 146
           +         + L +++
Sbjct: 299 D--FSYNFGWQHLELVN 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 18/136 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP---HLNRLGTLIIN 72
             L+L  NKI+ IE+     D F        +DL  NEI +         L  +  + ++
Sbjct: 384 HILNLTKNKISKIES-----DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITKKPNY 131
            N+  ++  N    +P L  L+L    L N+     P   L  L  L L +N+I    + 
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND- 497

Query: 132 RLYVIHKLKSLRVLDF 147
              ++  L+ L +LD 
Sbjct: 498 --DMLEGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 25/142 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP----HLNRLGTLII 71
            E+ L  NK   +       + F        + L    +  +++ P     L  L  L +
Sbjct: 433 FEIYLSYNKYLQLTR-----NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNL-------VEIDPLTSLPKLQFLSLLDNS 124
           +NN I  IN ++ E L KL  L L +N L  L         I  L  L  L  L+L  N 
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 125 ITKKPNYRLYVIHKLKSLRVLD 146
             + P     V   L  L+++D
Sbjct: 548 FDEIPV---EVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L+L  N++  +         F       ++D+  N I KLE      L  L  L + +
Sbjct: 28  TVLNLTHNQLRRLPA-----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N +++++     F   L  L L +N +  +   +P      L  L L  N ++       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL--- 138

Query: 134 YVIHKLKSLRVLDF 147
               +L++L+ L  
Sbjct: 139 GTQVQLENLQELLL 152

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 3   RLTADLIWKSPHFFNAIKERELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKL 57
           +L   L  K          R L L  ++++         L  T      +DLS N +  +
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT--NLTMLDLSYNNLNVV 263

Query: 58  EN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV------NLVEIDP- 108
            N     L +L    +  N I  +  +    L  +  L L  +         +L +ID  
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 109 -LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               L  L+ L++ DN I    +    +   L +L+ L 
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKS---NMFTGLINLKYLS 359

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFDTIDLSDNEI-------VKLENMPHLNRLGTLIINN 73
             L++  N I  +  N+         + LS++             ++ H + L  L +  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTK 390

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N+I++I  +   +L  L  L L  N +   +       L  +  + L  N   +      
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR--- 447

Query: 134 YVIHKLKSLRVLDF 147
                + SL+ L  
Sbjct: 448 NSFALVPSLQRLML 461

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + L+L+ N+++ +     ++  F        + L  N I K++N P      L TL +++
Sbjct: 76  KVLNLQHNELSQL-----SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID-PLTSLPKLQFLSLLDNSITK-KPNY 131
           N ++         L  L  L+L+NN++  L   +  + +   L+ L L  N I +  P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG- 189

Query: 132 RLYVIHKLKSLRVLD 146
                H +  L  L 
Sbjct: 190 ---CFHAIGRLFGLF 201

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRI 76
           + L LR   +  +++  +          +DLS+N I  + +  +  L +L  L + +N +
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 77  TRINPNIGEF--------LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
            R+  +            L  LH L L +N    +   +    L +L+ + L  N++   
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTL 575

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P     V +   SL+ L+
Sbjct: 576 PA---SVFNNQVSLKSLN 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 22  RELDLRGNKI-----AVIENLGATE-----DQFDTIDLSDNEIVKLENMP--HLNRLGTL 69
               L  N I       +  L           F    +S   + K+++     L  L  L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT----SLPKLQFLSLLDNSI 125
            + +N I  I  N+   L  L  L L+N+   +L  +   T    +   L  L+L  N I
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 126 TKKPNYRLYVIHKLKSLRVLDF 147
           +K  +        L  L VLD 
Sbjct: 394 SKIES---DAFSWLGHLEVLDL 412

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 11/116 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---------TIDLSDNEIVKL--ENMPHLNRLGTLI 70
             LDL+ N +A +                     ++L  N   ++  E    L  L  + 
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           +  N +  +  ++      L +L L  N + ++ +     +   L  L +  N   
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIIN 72
             LDL  N ++  +      L   +     + LS+N+I  L+    ++   + L  L ++
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQ----ELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLV--EIDPLTSLPKLQFLSLLDNSITKKPN 130
           +N+I   +P     + +L  L L N +L   +  ++    +   ++ LSL ++ ++   N
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 131 YRLYVIHKLKSLRVLDF 147
                + K  +L +LD 
Sbjct: 240 TTFLGL-KWTNLTMLDL 255

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 45  DTIDLSDNEIVKLENMPH--LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
           +  D S     KL  +P      +  L + +N++ R+         +L +L +  N +  
Sbjct: 7   EVADCSHL---KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 103 LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L E +    LP L+ L+L  N +++  +          +L  L 
Sbjct: 64  L-EPELCQKLPMLKVLNLQHNELSQLSD---KTFAFCTNLTELH 103

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 22  RELDLRGNKI------AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           +   +  N +      A ++ +         +D   N++  LE      +L  L ++ N+
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLG----LLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY--RL 133
           I  I  +   F  ++  L  ++N+L  +  I    S+  +  +    N I  +       
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 134 YVIHKLKSLRVLD 146
              +K  +   + 
Sbjct: 667 MDDYKGINASTVT 679

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 19/140 (13%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFD-----TIDLSDNEIVKL--ENMPHLNRLGTLIINN 73
             +D   NKI +   N+  + D +      T+ LS NEI K   E     + + T+I++N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 74  NRITRINPNIGEF-------LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           N +T I  N  +           L T+ L  N+L +L +    T+LP L  + +  N  +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
             P            L+   
Sbjct: 767 SFPT----QPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 13  PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPH---LNRLGT 68
             F   +K  +L L  N+I  I E+  A  DQ + +  S N++  + N+ +   +  +G+
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 69  LIINNNRITRINPNIGEFLP-----KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           +  + N+I     NI   +         T+ L+ N +      +   +   +  + L +N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNN 707

Query: 124 SITKKPNYRL----YVIHKLKSLRVLD 146
            +T  P   L            L  +D
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLE-------NMPHLNRLGTLIIN 72
             L    NK+  I N+   +      ++D S N+I           +        T+ ++
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL------VEIDPLTSLPKLQFLSLLDNSIT 126
            N I +    +      + T++L+NN + ++       +     +   L  + L  N +T
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
              +   +    L  L  +D
Sbjct: 742 SLSDD--FRATTLPYLSNMD 759

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 23/141 (16%)

Query: 22  RELDLRGNKIAVI--ENLGATEDQFD------TIDLSDNEIVKLEN---MPHLNRLGTLI 70
             + L  N +  I   +L   +  +       TIDL  N++  L +      L  L  + 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLV---NLVEIDP--LTSLPKLQFLSLLDNSI 125
           ++ N  +           +L    + + R      ++   P  +T+ P L  L +  N I
Sbjct: 760 VSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 126 TKKPNYRLYVIHKLKSLRVLD 146
            K              L +LD
Sbjct: 819 RKVDE------KLTPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 20/156 (12%), Positives = 37/156 (23%), Gaps = 36/156 (23%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFDTIDLSDNEIVKLENMPHL--------NRLG----- 67
           + +    +        +   +   D     +NE +   N+  L          +      
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 68  --------TLIINNNRITRINPNIGEF---------LPKLHTLVLTNNRLVNLVEIDPLT 110
                   +L I  NR         ++          PK+    +  N L        L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 111 SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            + KL  L  + N +                L  L 
Sbjct: 571 KMVKLGLLDCVHNKVRHLEA-----FGTNVKLTDLK 601

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 2/110 (1%)

Query: 46  TIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            + L+         + +  L  L  L    +  T      G+            +R+   
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153
            +   L    +L    LL ++I + P  +        SL+      + N+
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 22  RELDLRGNKI----AVIENLGATE--DQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINN 73
             +D+  N          N    +        D   N I++     +     L  L I +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           N I +++  +    P+L+ L + +N  +++ ++  +    +     LL +   
Sbjct: 816 NDIRKVDEKL---TPQLYILDIADNPNISI-DVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 19/152 (12%), Positives = 38/152 (25%), Gaps = 31/152 (20%)

Query: 22  RELDLRGNKIAVI----------ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLII 71
           + L    +   V            ++         +      +   + +   + L   I 
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP-LTSLPKLQFLSLLDNSITKKPN 130
            N  +  I  +    L       LTN     +  I   +  L KLQ +   ++  T    
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLTNR----ITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 131 YRLYV----------------IHKLKSLRVLD 146
              +                    LK L  ++
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + +DL  N + ++         F        +DLS  EI  +E+     L+ L  LI+  
Sbjct: 35  KNIDLSFNPLKIL-----KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I   +P     L  L  LV    +L +L    P+  L  L+ L++  N I        
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK--LP 146

Query: 134 YVIHKLKSLRVLDF 147
                L +L  +D 
Sbjct: 147 AYFSNLTNLVHVDL 160

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN---MPHLNRLGT 68
           S         R LDL  N   ++       ++   +D   + + ++        L +L  
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L I+          I   L  L+TL +  N   +    +   +   L FL L    + + 
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 129 PNYRLYVIHKLKSLRVLD 146
                 V   L  L++L+
Sbjct: 489 SW---GVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 30/163 (18%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I          K + L +   ++     L     +  ++ L+ N+         L  L  
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK--SLTLTMNKGSISFKKVALPSLSY 354

Query: 69  LIINNNRITRINPNIGEF-------------------------LPKLHTLVLTNNRLVNL 103
           L ++ N ++                                  L +L  L   ++ L  +
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            E     SL KL +L +   +     +    +   L SL  L 
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 19  IKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIIN 72
           +   E  L        +       +F        + L+   I  LE++P   +  +L I 
Sbjct: 261 VTIDEFRLTYTNDFSDDI-----VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSII 315

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
             ++ +        LP L +L LT N+           +LP L +L L  N+++      
Sbjct: 316 RCQLKQFPTL---DLPFLKSLTLTMNK---GSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 133 LYVIHKLKSLRVLD 146
              +    SLR LD
Sbjct: 370 YSDL-GTNSLRHLD 382

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---EN 59
           + +   F +  K   LD+      +  +       F       T+ ++ N          
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFD-----GIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 60  MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119
             +   L  L ++  ++ +I+  + + L +L  L +++N L+ L        L  L  L 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLD 527

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLD 146
              N I         + H  KSL   +
Sbjct: 528 CSFNRIETSKG---ILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + LDL   +I  IE     +  +        + L+ N I          L  L  L+   
Sbjct: 59  QWLDLSRCEIETIE-----DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
            ++  +       L  L  L + +N + +       ++L  L  + L  N I       L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 134 YVIHKLK-SLRVLD 146
             + +       LD
Sbjct: 174 QFLRENPQVNLSLD 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 21/148 (14%)

Query: 12  SPHFFNAIKERELDLRGNKI--AVIENLGATEDQFDTIDLSDNEIVKLENMPHLN----- 64
               F  IK  EL LRGN     +++             L   E     N+         
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 65  -----RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119
                 +    +        +      L  +  + L      ++  ++ +    K Q LS
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV---SIKYLEDVPKHFKWQSLS 313

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           ++   + + P         L  L+ L  
Sbjct: 314 IIRCQLKQFPT------LDLPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKL-----ENMPHLNR-LGTLIINN 73
           ++L++  N I   +      +      +DLS N I  +     + +    +   +L ++ 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN--- 130
           N I  I     + + KLH L L  N   + +    L +L  L    L+      + N   
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 131 YRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS 164
           +   ++  L  + + +F+     +  +    F  
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             LDL   ++  I         FD       +++S N ++ L++     L  L TL  + 
Sbjct: 476 TFLDLSKCQLEQIS-----WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYR 132
           NRI      +  F   L    LTNN          +  + + Q FL  +        N  
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNN---------SVACICEHQKFLQWVKEQKQFLVNVE 581

Query: 133 LYV---IHKLKSLRVLDF 147
                   ++ +  VLDF
Sbjct: 582 QMTCATPVEMNTSLVLDF 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 46  TIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104
           T    D ++ K+ +++P  +    + ++ N +  +         +L  L L+   +  + 
Sbjct: 15  TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI- 71

Query: 105 EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           E      L  L  L L  N I             L SL  L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSP---GSFSGLTSLENLV 110

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 23/131 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           +ELDL GN ++ I                  ++LS N + +  ++  L+ L TL +NNN 
Sbjct: 37  KELDLSGNPLSQIS-----AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
           +  +        P + TL   NN +  +      +     + + L +N IT   +     
Sbjct: 92  VQELLV-----GPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITMLRD---LD 139

Query: 136 IHKLKSLRVLD 146
                 ++ LD
Sbjct: 140 EGCRSRVQYLD 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               +    R LDL  N +  +    + E    T+  ++N I ++           + + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIE----TLHAANNNISRVS-CSRGQGKKNIYLA 128

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           NN+IT +         ++  L L  N +  +   +   S   L+ L+L  N I       
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 133 LYVIHKLKSLRVLD 146
           +        L+ LD
Sbjct: 189 V-----FAKLKTLD 197

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 22  RELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           + LDL+ N+I  +    L A+ D  + ++L  N I  ++      +L TL +++N++  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P        +  + L NN+LV + +   L     L+   L  N          +   K 
Sbjct: 207 GPEFQS-AAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFF--SKN 261

Query: 140 KSLRVLDFKKVKN 152
           + ++ +  + VK 
Sbjct: 262 QRVQTVAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 58  ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
           E   + NR     + ++ + +   ++ +    +  L L+ N L  +     L    KL+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+L  N + +  +     +  L +LR LD
Sbjct: 63  LNLSSNVLYETLD-----LESLSTLRTLD 86

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               +     +LDL  N+I+ +  L     +   + L  N+I  +  +  L  L  L +N
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLT-KLTELKLGANQISNISPLAGLTALTNLELN 295

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            N++  I+P     L  L  L L  N + +   I P++SL KLQ L   +N ++   +  
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSDVSS-- 348

Query: 133 LYVIHKLKSLRVLDF 147
              +  L ++  L  
Sbjct: 349 ---LANLTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 12/134 (8%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               N  K  ++ +  N+IA I  L         + L +N+I  ++ + +L  L  L ++
Sbjct: 84  TPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLKNLTNLNRLELS 142

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           +N I+ I   +   L  L  L   N     + ++ PL +L  L+ L +  N ++      
Sbjct: 143 SNTISDI-SALSG-LTSLQQLSFGN----QVTDLKPLANLTTLERLDISSNKVSDISV-- 194

Query: 133 LYVIHKLKSLRVLD 146
              + KL +L  L 
Sbjct: 195 ---LAKLTNLESLI 205

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           ++L   GN++  ++ L       + +D+S N++  +  +  L  L +LI  NN+I+ I  
Sbjct: 159 QQLSF-GNQVTDLKPLA-NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-T 215

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
            +G  L  L  L L  N+L +   I  L SL  L  L L +N I+         +  L  
Sbjct: 216 PLGI-LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP-----LSGLTK 266

Query: 142 LRVLDF 147
           L  L  
Sbjct: 267 LTELKL 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 11/128 (8%)

Query: 20  KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           ++ +  L    +    +     DQ  T+      I  ++ + +LN L  +  +NN++T I
Sbjct: 25  EKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
              +   L KL  +++ NN++ +   I PL +L  L  L+L +N IT         +  L
Sbjct: 84  -TPLKN-LTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDIDP-----LKNL 133

Query: 140 KSLRVLDF 147
            +L  L+ 
Sbjct: 134 TNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L+L  N++  I  +   +     + L  N I  +  +  L +L  L   NN+++ ++ 
Sbjct: 290 TNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 348

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  ++ L   +N++ +   + PL +L ++  L L D + T  P      +    +
Sbjct: 349 L--ANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 142 LR 143
           ++
Sbjct: 404 VK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + L    NK++ + +L       + +    N+I  L  + +L R+  L +N+   T    
Sbjct: 334 QRLFFYNNKVSDVSSLANLT-NINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPV 392

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           N    +   +T+         L+    ++         +  N  +    
Sbjct: 393 NYKANVSIPNTVKNVTG---ALIAPATISDGGSYTEPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 49  LSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108
             D  I ++     L      ++    +T         L ++ TL      + +   ID 
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKS---IDG 63

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           +  L  L  ++  +N +T         +  L  L  +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILM 97

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMP---HLNRL 66
           S   F     + LDL  N +  + +  LG  + +   +D   + + ++        L  L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE--HLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
             L I++         I   L  L  L +  N        D  T L  L FL L    + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
           +         + L SL+VL+
Sbjct: 484 QLSP---TAFNSLSSLQVLN 500

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.1 bits (172), Expect = 9e-14
 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N +  +         F        +DLS  EI  +E+     L+ L TLI+  
Sbjct: 31  KNLDLSFNPLRHL-----GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT--KKPNY 131
           N I  +       L  L  LV     L +L    P+  L  L+ L++  N I   K P Y
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 132 RLYVIHKLKSLRVLDF 147
                  L +L  LD 
Sbjct: 145 ----FSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD--TIDLSDNEIVKLEN--MPHLNRLG 67
           S +F    +   LD + + +  +          +   +D+S        N     L+ L 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 68  TLIINNNRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            L +  N       P+I   L  L  L L+  +L  L       SL  LQ L++  N+  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFF 507

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
                  +    L SL+VLD
Sbjct: 508 SLDT---FPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 8/140 (5%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I +   F      + L+L   K      L         +  + N+     +   L  L  
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 69  LIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           L ++ N ++              L  L L+ N ++ +        L +L+ L    +++ 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLK 409

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
           +       V   L++L  LD
Sbjct: 410 QMSE--FSVFLSLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 19/150 (12%)

Query: 12  SPHFFNAIKERELDLRGNKI--AVIENLGATEDQFDTIDLSDNEIVKLENMPH-----LN 64
            P  F  I+  +L LR N     V++         +   L   E     N+       L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 65  RLGTLIINNNRITRIN------PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
            L  L I   R+  ++       ++   L  + +  L +     +  +   +     Q L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV---TIERVKDFSYNFGWQHL 309

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLDFK 148
            L++    + P  +L     LK L     K
Sbjct: 310 ELVNCKFGQFPTLKL---KSLKRLTFTSNK 336

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + LDL   +I  IE     +  +       T+ L+ N I  L       L+ L  L+   
Sbjct: 55  QVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
             +  +       L  L  L + +N + +    +  ++L  L+ L L  N I       L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 134 YVIHKLKSLRV 144
            V+H++  L +
Sbjct: 170 RVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           +  L    I ++++  +      L + N +  +        L  L  L  T+N+  N   
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN--- 339

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
                 LP L+FL L  N ++ K            SL+ LD 
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDL 380

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 22  RELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNRIT 77
             L + GN      + ++         +DLS  ++ +L       L+ L  L +++N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPK-LQFLSLLDNSIT 126
            ++    + L  L  L  + N ++   +   L   P  L FL+L  N   
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 18/136 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKL---ENMPHLNRLGTLIIN 72
           ++L      +A +EN                ++++ N I      E   +L  L  L ++
Sbjct: 103 QKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVN-LVEIDPLT-SLPKLQFLSLLDNSITKKPN 130
           +N+I  I       L ++  L L+ +  +N +  I P      +L  L+L +N  +    
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 131 YRLYVIHKLKSLRVLD 146
                I  L  L V  
Sbjct: 218 KTC--IQGLAGLEVHR 231

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
            E+ L  N I VI   GA    F        IDLS+N+I +L       L  L +L++  
Sbjct: 35  TEIRLEQNTIKVIPP-GA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N+IT +  ++ E L  L  L+L  N++  L  +D    L  L  LSL DN +        
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 134 YVIHKLKSLR 143
             +  ++++ 
Sbjct: 149 SPLRAIQTMH 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
             L L GNKI  +         F+       + L+ N+I  L       L+ L  L + +
Sbjct: 83  NSLVLYGNKITELPK-----SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 74  NRITRINPNIGEFLPKLHTLVLTNN 98
           N++  I       L  + T+ L  N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLEN--MPHLNRL 66
            P  F+ +K   L +   K+  I      +D  +    + L  N+I  +E   +   ++L
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIP-----KDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
             L + +N+I  I      FLP L  L L NN+L  +     L  L  LQ + L  N+IT
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNIT 277

Query: 127 KKPNY---RLYVIHKLKSLRVLD 146
           K        +    K      + 
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 20/141 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
            EL L  NKI  IE      +          + L  N+I  +EN  +  L  L  L ++N
Sbjct: 196 NELHLDHNKIQAIE-----LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVE-----IDPLTSLPKLQFLSLLDNSITKK 128
           N+++R+   + + L  L  + L  N +  +       +           +SL +N +   
Sbjct: 251 NKLSRVPAGLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 129 PNYRLYVIHKLKSLRVLDFKK 149
              +      +     + F  
Sbjct: 310 -EVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 36/152 (23%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
             L L  NKI+ I    A    F        + +S N +V++      + L  L I++NR
Sbjct: 81  YALVLVNNKISKIHE-KA----FSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNR 134

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRL------------VNLVEID----PLTSLPK----- 114
           I ++   +   L  ++ + +  N L            + L  +      LT +PK     
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194

Query: 115 LQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L  L L  N I          + +   L  L 
Sbjct: 195 LNELHLDHNKIQAIEL---EDLLRYSKLYRLG 223

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 46  TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            +DL +N+I +L       L  L  L++ NN+I++I+      L KL  L ++ N LV +
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               P      L  L + DN I K P     V   L+++  ++
Sbjct: 118 ----PPNLPSSLVELRIHDNRIRKVPK---GVFSGLRNMNCIE 153

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--------MPHLNRLGTLIINN 73
           REL L  NK++ +            + L  N I K+                   + + N
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 74  NRITRINPNIGEF--LPKLHTLVLTNNR 99
           N +         F  +     +   N +
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 17/136 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEI-VKLEN--MPHLNRLGTLIIN 72
             L L  N I  +     T   F        ++L      + ++     +L  L  L + 
Sbjct: 27  ERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL-VEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           +++I  ++P+  + L  L  L L    L +  ++     +L  L  L L  N I     +
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 132 RLYVIHKLKSLRVLDF 147
                 KL SL+ +DF
Sbjct: 142 P--SFGKLNSLKSIDF 155

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 29/147 (19%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
           + L+L  NKI  I +     + F        ++LS N + +L +     L ++  + +  
Sbjct: 293 KVLNLAYNKINKIAD-----EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLV------NLVEID----PLTSLPKLQF----LS 119
           N I  I     +FL KL TL L +N L       ++ +I      L +LPK+      + 
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 120 LLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L +N +       LY + ++  L++L 
Sbjct: 408 LSENRLENLDI--LYFLLRVPHLQILI 432

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRI 76
             +DL+ N IA+I+      L   +    T+DL DN +  +  +P +     + ++ N++
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQ----TLDLRDNALTTIHFIPSIP---DIFLSGNKL 393

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI 136
             +           + + L+ NRL NL  +  L  +P LQ L L  N  +     +    
Sbjct: 394 VTLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT--P 447

Query: 137 HKLKSLRVLD 146
            +  SL  L 
Sbjct: 448 SENPSLEQLF 457

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD--TIDLSDNEIVKLENMP-------HLNRLGTLIIN 72
           + L L  N+ +         +      + L +N +               L+ L  L +N
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
           +N +  + P +   L  L  L L +NRL  L           L+ L +  N + 
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVL---SHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 5e-11
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN---MPHLNRLGTLIINNNRITR 78
            ++ L GNK+  +  +       + I LS+N +  L+    +  +  L  LI+N NR + 
Sbjct: 384 PDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 79  INPN-IGEFLPKLHTLVLTNNRLVNLVEI----DPLTSLPKLQFLSLLDNSITKKPNYRL 133
            + +      P L  L L  N L    E     D    L  LQ L L  N +   P    
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP--- 497

Query: 134 YVIHKLKSLRVLD 146
            V   L +LR L 
Sbjct: 498 GVFSHLTALRGLS 510

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
           + LDLR N +  I  +         I LS N++V L  +        + ++ NR+  ++ 
Sbjct: 365 QTLDLRDNALTTIHFI----PSIPDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDI 418

Query: 82  N-IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL--YVIHK 138
                 +P L  L+L  NR  +       +  P L+ L L +N +       L   V   
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 139 LKSLRVLD 146
           L  L+VL 
Sbjct: 479 LSHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 23/154 (14%)

Query: 11  KSPHFFNAIKERELDLRGNKIAVI------ENLGATEDQ-------FDTIDLSDNEIVKL 57
           K  + F  +    LD+ GN   V         +  ++                 + I   
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 58  -----ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL 112
                  +   + +  L +++  +  +N  + E L  L  L L  N++ N +  +    L
Sbjct: 256 DQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGL 313

Query: 113 PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             LQ L+L  N + +  +   Y    L  +  +D
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFY---GLPKVAYID 344

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENMP--HLNRLGTLIINNNRIT 77
           + L+L      +  +  A  +      +DL  ++I  L       L  L  L +    ++
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

Query: 78  R--INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
              +       L  L  L L+ N++ +L        L  L+ +    N I     + L  
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 136 IHKLKSLRVLD 146
           +    +L    
Sbjct: 171 LQGK-TLSFFS 180

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 49  LSDNEIVKLENMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
           ++      L  +P  LN    L+++ N I  +  +   FL +L  L L +      ++ +
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 108 PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
              +LP L+ L L  + I             L  L  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHP---DAFQGLFHLFELR 103

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 21/147 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLE---NMPHLNRLGTLIIN 72
            EL L    +    +    +  F        +DLS N+I  L    +   LN L ++  +
Sbjct: 100 FELRLYFCGL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 73  NNRITRINPNIGEFL--PKLHTLVLTNNRLVNLVEIDPLTSLPK-----LQFLSLLDNSI 125
           +N+I  +  +  E L    L    L  N L + V +D    +       L+ L +  N  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 126 TKKPNYRLYVIHKLKSLRVLDFKKVKN 152
           T          + +   +        +
Sbjct: 217 TVDITGNF--SNAISKSQAFSLILAHH 241

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 22  RELDLRGNKIAVIENLGATE-DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
           + L L  N +  +     +       + L+ N +  L +      L  L I+ N++   N
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK 140
           P+       L  L +T+N+ +   E+    +      +++          Y         
Sbjct: 543 PD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS----FS 595

Query: 141 SLRVLDF 147
            + +   
Sbjct: 596 GVSLFSL 602

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENM--PHLNRLGTLIINNNRIT 77
            EL L  N+  V+E  G  +   Q   I+ S+N+I  +E       + +  +++ +NR+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH 137
            +   + + L  L TL+L +NR+  +   D    L  ++ LSL DN IT         +H
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 138 KLKSLRVLD 146
            L +L +L 
Sbjct: 154 SLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRL 66
           F    + R+++   NKI  IE  GA    F+       I L+ N +  +++     L  L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEE-GA----FEGASGVNEILLTSNRLENVQHKMFKGLESL 107

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
            TL++ +NRIT +  +    L  +  L L +N++  +       +L  L  L+LL N
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 58  ENMPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKL 115
           EN+P L    +L ++NNR+ R++   +I +  P L  L L+ N L +  E+D +  L  L
Sbjct: 167 ENIPELL---SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-L 222

Query: 116 QFLSLLDNSITKK----PNYRLYVIHKLKSLRVLDFKKVK 151
           + L L  NS+         Y   +  +   L  LD  ++ 
Sbjct: 223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 4e-13
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            ELD   N I V+        +   + L  N +     + +   L  + ++ N + +I  
Sbjct: 214 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           +    + +L  L ++NNRLV L        +P L+ L L  N +            +   
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 325

Query: 142 LRVLD 146
           L  L 
Sbjct: 326 LENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 7e-13
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIINNNRITR 78
           ++L +  N I  +  ++         + L  N++  L      +  +L TL ++NN + R
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
           I  +  +    L  L L++NRL ++     L+ +P L   ++  N ++         +  
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLST--------LAI 209

Query: 139 LKSLRVLD 146
             ++  LD
Sbjct: 210 PIAVEELD 217

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + +  + + +  +          D       ++L+D +I +++     + + +  L +  
Sbjct: 54  KIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N I  + P++ + +P L  LVL  N L +L       + PKL  LS+ +N++ +  +   
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIED--- 164

Query: 134 YVIHKLKSLRVLD 146
                  SL+ L 
Sbjct: 165 DTFQATTSLQNLQ 177

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPH-LNR 65
               N     E+DL  N++  I         F        + +S+N +V L      +  
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIM-----YHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
           L  L +++N +  +  N  +   +L  L L +N +V L     L++   L+ L+L  N  
Sbjct: 303 LKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDW 357

Query: 126 TKKPNYRLYVIHKLKSLRVLD 146
               N    +   +    V D
Sbjct: 358 D--CNSLRALFRNVARPAVDD 376

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 9e-11
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPHLNRLGTLIINNNRITR 78
           + L L  N++  ++               ++S N +  L     +     L  ++N I  
Sbjct: 174 QNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVE---ELDASHNSINV 225

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
           +   +     +L  L L +N    L +   L + P L  + L  N + K      +   K
Sbjct: 226 VRGPV---NVELTILKLQHNN---LTDTAWLLNYPGLVEVDLSYNELEKIMY---HPFVK 276

Query: 139 LKSLRVLD 146
           ++ L  L 
Sbjct: 277 MQRLERLY 284

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 35/289 (12%), Positives = 97/289 (33%), Gaps = 28/289 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRIN 80
             L +  N++  +   G        +DLS N ++ +E N P  +RL  L +++N I  + 
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL---------LDNSITKKPNY 131
            +       L  L L++N            ++ +               L++ +  K + 
Sbjct: 341 LST---HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESD 397

Query: 132 RLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVE-------- 183
           + Y+   L+ + +    +   + +   ++      ++  +   + +  +P++        
Sbjct: 398 KPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAE 457

Query: 184 -------VPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 236
                  V  ++ E+ QQ   +     E    ++   +    L   +     + +     
Sbjct: 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKER 517

Query: 237 DLKIPDYDSGSKDVKENDEKMVPDVENEADVEPNNVENQKNDELAAMEQ 285
                      +   +  +K   D+E E       ++N++  +    ++
Sbjct: 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 47  IDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEI 106
           ID+   ++        LN    +   N+ + ++   + +   ++  L L + ++  + + 
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DT 92

Query: 107 DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                   +Q L +  N+I   P    +V   +  L VL 
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLV 129

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
           N+ +      + I+              L     +   N+ +  L     L S  +++ L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELL 80

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           +L D  I +      Y      +++ L 
Sbjct: 81  NLNDLQIEEIDT---YAFAYAHTIQKLY 105

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLNRLGTLIINN 73
           + LDL  N+I  I                  + L+ N I  +E      L  L  L ++ 
Sbjct: 55  KSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYR 132
           N ++ ++ +  + L  L  L L  N    L E    + L KLQ L + +  + TK     
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-- 167

Query: 133 LYVIHKLKSLRVLD 146
                 L  L  L+
Sbjct: 168 -KDFAGLTFLEELE 180

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
           + L L  N I  IE     ED F        +DLS N +  L +     L+ L  L +  
Sbjct: 79  QALVLTSNGINTIE-----EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 74  NRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           N    +      F  L KL  L + N      ++      L  L+ L +  + +      
Sbjct: 134 NPYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 132 RLYVIHKLKSLR 143
            L  I  +  L 
Sbjct: 193 SLKSIQNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 18/162 (11%), Positives = 47/162 (29%), Gaps = 40/162 (24%)

Query: 22  RELDLRGNKIAVIENLGA---------------------TEDQFD------TIDLSDNEI 54
             L+L GN    +                              F        +++  +++
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 55  VKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL-------VE 105
              E      +  +  LI++  +   +     +    +  L L +  L           E
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
            + L      + + + D S+ +       +++++  L  L+F
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMK----LLNQISGLLELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 24/140 (17%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
            EL++  + +   E     ++         + L   + + L    +   + +  L + + 
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVS----HLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 75  RITRINPN---IGEF-----LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            +   + +    GE            + +T+  L  ++++  L  +  L  L    N + 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLK 290

Query: 127 KKPNYRLYVIHKLKSLRVLD 146
             P+    +  +L SL+ + 
Sbjct: 291 SVPD---GIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 23/118 (19%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLE----------NMPHLNR 65
             L L   +  ++      E   D       ++L D ++              ++     
Sbjct: 201 SHLILHMKQHILLL-----EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 66  LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
              + I +  + ++   +   +  L  L  + N+L ++        L  LQ + L  N
Sbjct: 256 FRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSV-PDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 12/94 (12%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDT---------IDLSDNEIVKLENM-PHLN 64
                    L+LR   +        +  + ++         + ++D  + ++  +   ++
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
            L  L  + N++  +   I + L  L  + L  N
Sbjct: 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
             + +    I  I      +L         + L  N+I K++   +  LN L  L ++ N
Sbjct: 174 SYIRIADTNITTIPQGLPPSL-------TELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY--- 131
            I+ ++       P L  L L NN+LV +     L     +Q + L +N+I+   +    
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 132 RLYVIHKLKSLRVLD 146
                 K  S   + 
Sbjct: 285 PPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
             L L  NKI+ I   GA    F        + LS N++ +L        L  L ++ N 
Sbjct: 79  HTLILINNKISKISP-GA----FAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENE 132

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITK 127
           IT++  ++   L ++  + L  N L +   I+      + KL ++ + D +IT 
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITT 185

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 46  TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            +DL +N+I ++++    +L  L TLI+ NN+I++I+P     L KL  L L+ N+L  L
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
               P      LQ L + +N ITK         + L  + V++
Sbjct: 116 ----PEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVE 151

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 30/144 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINN 73
            EL L GNKI  ++                 + LS N I  ++N  + +   L  L +NN
Sbjct: 195 TELHLDGNKITKVD-----AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNL-----VEIDPLTSLPKLQFLSLLDNSITKK 128
           N++ ++   + +    +  + L NN +  +           T       +SL  N +   
Sbjct: 250 NKLVKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV--- 305

Query: 129 PNYRLYVIHK-----LKSLRVLDF 147
              + + I       +     +  
Sbjct: 306 ---QYWEIQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--------MPHLNRL 66
             N    REL L  NK+  +    A       + L +N I  + +               
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 67  GTLIINNNRI--TRINPNIGEFLPKLHTLVLTNNR 99
             + + +N +    I P+    +     + L N +
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + LDL  NKI  I +                + L  + I  +E      L  L  L +++
Sbjct: 29  KSLDLSFNKITYIGH-----GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYR 132
           N ++ ++ +    L  L  L L  N    L       +L  LQ L + +  + ++     
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-- 141

Query: 133 LYVIHKLKSLRVLDF 147
                 L SL  L+ 
Sbjct: 142 -IDFAGLTSLNELEI 155

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 19/135 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           + L L+ ++I  IE      D F        +DLSDN +  L +     L+ L  L +  
Sbjct: 53  QVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 74  NRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           N    +      F  L  L TL + N    + +       L  L  L +   S+     Y
Sbjct: 108 NPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN---Y 163

Query: 132 RLYVIHKLKSLRVLD 146
           +   +  ++ +  L 
Sbjct: 164 QSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSD-NEIVKLENMP--HLNRLGTLIINNNRI 76
           + L+L GN    +       +     T+ + +     ++  +    L  L  L I    +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI 136
                   + +  +H L L  +    L+EI     L  +++L L D ++ +     L V 
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIF-ADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 137 HKLKSLRVLDFK 148
                ++ L F+
Sbjct: 220 EVSSPMKKLAFR 231

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 24  LDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRIN 80
            D   ++  V+  LG  E      + +    +    +     L ++  + + N+++  + 
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
            +  + L  L  L L+ N +V     +     + P LQ L L  N +         ++  
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG-EILLT 385

Query: 139 LKSLRVLDF 147
           LK+L  LD 
Sbjct: 386 LKNLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 28/162 (17%)

Query: 7   DLIWKSPHFFNAIKE-RELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPH 62
           +   K+     A    + L L  N +  ++  G          ++D+S N    + +   
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407

Query: 63  -LNRLGTLIINNNRITRINPN-----------------IGEFLPKLHTLVLTNNRLVNLV 104
              ++  L +++  I  +                       FLP+L  L ++ N+   L 
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK---LK 464

Query: 105 EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +   +  P L  + +  N +   P     +  +L SL+ + 
Sbjct: 465 TLPDASLFPVLLVMKISRNQLKSVP---DGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLENMPH-----LNRLGTLIINNN 74
           + + +  +K+ ++     ++     + +DLS+N +V+              L TL+++ N
Sbjct: 313 KRITVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 75  RITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            +  +         L  L +L ++ N    +   D      K++FL+L    I       
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPM--PDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 133 LYVIHKLKSLRVLD 146
                  ++L VLD
Sbjct: 430 ------PQTLEVLD 437

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
             LD+  N +      L   +     + +S N++  L +      L  + I+ N++  + 
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQ----ELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP 489

Query: 81  PNIGEFLPKLHTLVLTNNRLV 101
             I + L  L  + L  N   
Sbjct: 490 DGIFDRLTSLQKIWLHTNPWD 510

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 9e-13
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 48  DLSDNEIVKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           ++S N I +L       L++L  LII++NRI  ++ ++ +F  +L  L L++N+LV +  
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-- 84

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                    L+ L L  N+    P         +  L+ L 
Sbjct: 85  --SCHPTVNLKHLDLSFNAFDALP--ICKEFGNMSQLKFLG 121

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 43  QFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITRINPNIGEF--LPKLHTLVLTNN 98
            F  +D S+N +     EN  HL  L TLI+  N++  ++        +  L  L ++ N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 99  RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +    +    +    L  L++  N +T      L        ++VLD
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLD 427

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%)

Query: 40  TEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99
           +        +S   +V +     ++    L  +NN +T         L +L TL+L  N+
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 100 LVNL-VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L  L    +  T +  LQ L +  NS++             KSL  L+
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLN 405

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 22  RELDLRGNKIAVIENLGATEDQF---DTIDLSDNEIVKLENM---PHLNRLGTLIINNNR 75
             L L+ N++  +  +     Q      +D+S N +   E          L +L +++N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
           +T          P++  L L +N++ ++     +  L  LQ L++  N +   P+    +
Sbjct: 411 LTDTIF--RCLPPRIKVLDLHSNKIKSI--PKQVVKLEALQELNVASNQLKSVPD---GI 463

Query: 136 IHKLKSLRVLD 146
             +L SL+ + 
Sbjct: 464 FDRLTSLQKIW 474

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           ++LD+  N ++  E     +          ++++S N +          R+  L +++N+
Sbjct: 377 QQLDISQNSVSYDEK----KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           I  I   + + L  L  L + +N+L ++ +      L  LQ + L  N
Sbjct: 433 IKSIPKQVVK-LEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTN 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 21/139 (15%)

Query: 22  RELDLRGNKI------AVIENLGATEDQFDTIDLSDNEIVK----LENMPHLNRLGTLII 71
           + + +  N +        ++ +         ++   N++        +   L  L    +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLG----MLECLYNQLEGKLPAFGSEIKLASLN---L 360

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
             N+IT I  N   F  ++  L   +N+L  +  I    S+  +  +    N I      
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 132 RLY----VIHKLKSLRVLD 146
                     K  ++  ++
Sbjct: 421 NFDPLDPTPFKGINVSSIN 439

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 33/149 (22%)

Query: 22  RELDLRGNKIAVI---------ENLGATEDQFDTIDLSDNEI-----VKLENMP----HL 63
             L    NK+  I           +         ID S NEI        + +       
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMS-------AIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 64  NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL------VEIDPLTSLPKLQF 117
             + ++ ++NN+I++    +      L ++ L  N L  +       E +   +   L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           + L  N +TK  +        L  L  +D
Sbjct: 493 IDLRFNKLTKLSDDFR--ATTLPYLVGID 519

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 21/142 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD--------TIDLSDNEIVKL--ENMPHLNRLGTLII 71
             +D   N+I  ++                  +I+LS+N+I K   E     + L ++ +
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 72  NNNRITRINPNIGEFLP-------KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
             N +T I  N  +           L ++ L  N+L  L +    T+LP L  + L  NS
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 125 ITKKPNYRLYVIHKLKSLRVLD 146
            +K P           +L+   
Sbjct: 525 FSKFPT----QPLNSSTLKGFG 542

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 22  RELDLRGNKIAVI-ENLGATE-DQFDTIDLSDN-------EIVKLENMPHLNRLGTLIIN 72
             +DLR NK+  + ++  AT       IDLS N       + +    +            
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 73  NNRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129
            NR  R     I    P L  L + +N +  +         P +  L + DN      
Sbjct: 551 GNRTLREWPEGITL-CPSLTQLQIGSNDIRKV----NEKITPNISVLDIKDNPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 34/155 (21%)

Query: 22  RELDLRGNKIAVIENLGATE-------DQFDTIDLSDNEIVKLE--NMPHLNRLGT---- 68
           R+  +  +         A E        Q+ T DL  + +  L    + +   L      
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 69  ---------LIINNNRITRINPNIGEF--------LPKLHTLVLTNNRLVNLVEIDPLTS 111
                    + +  NR         ++          K+  + +  N L        L  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 112 LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           + KL  L  L N +  K             L  L+
Sbjct: 329 MKKLGMLECLYNQLEGKLP----AFGSEIKLASLN 359

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 16/116 (13%)

Query: 22  RELDLRGNKI----AVIENLGATE--DQFDTIDLSDNEIVKLENMP----HLNRLGTLII 71
             +DL  N          N    +     +  D   N    L   P        L  L I
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLCPSLTQLQI 573

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            +N I ++N  I    P +  L + +N  +++ ++  +    +     L  +    
Sbjct: 574 GSNDIRKVNEKI---TPNISVLDIKDNPNISI-DLSYVCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 12/133 (9%)

Query: 22  RELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRI 76
             L L G          I  L   E     + L  +     E +     +   + +  + 
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELE----VLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV- 135
                    F+        ++     +       S+ K   ++L D  I +  N   +V 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 136 --IHKLKSLRVLD 146
             + +L  LR   
Sbjct: 200 KAVMRLTKLRQFY 212

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             + L    +  +  +         + +++        +  L+ L  L I    +T    
Sbjct: 47  TYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI 105

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L  L  L ++++   +   +  + +LPK+  + L  N         +  +  L  
Sbjct: 106 PNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITD----IMPLKTLPE 160

Query: 142 LRVLD 146
           L+ L+
Sbjct: 161 LKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEI--VKLENMPHLNRLGTLIINNNRITRI 79
           ++L +          + +     + + +   ++   K+ N+  L  L  L I+++     
Sbjct: 69  KDLTINNIHATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
                  LPK++++ L+ N  +   +I PL +LP+L+ L++  + +          I   
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHD-----YRGIEDF 180

Query: 140 KSLRVLD 146
             L  L 
Sbjct: 181 PKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 14/109 (12%)

Query: 39  ATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98
              +Q       DN  +              ++  +    I       +  L  + L N 
Sbjct: 1   GAAEQTGLKASQDNVNIPDSTFKAYLNG---LLGQSSTANITE---AQMNSLTYITLANI 54

Query: 99  RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
              N+ ++  +     ++ L++ +   T         I  L +L  L  
Sbjct: 55  ---NVTDLTGIEYAHNIKDLTINNIHATN-----YNPISGLSNLERLRI 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 23/131 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPHLNRLGTLIINNNR 75
           +ELDL GN ++ I                  ++LS N + +  ++  L+ L TL +NNN 
Sbjct: 37  KELDLSGNPLSQIS-----AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91

Query: 76  ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV 135
           +  +        P + TL   NN +  +      +     + + L +N IT   +     
Sbjct: 92  VQELLV-----GPSIETLHAANNNISRV----SCSRGQGKKNIYLANNKITMLRD---LD 139

Query: 136 IHKLKSLRVLD 146
                 ++ LD
Sbjct: 140 EGCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
               +    R LDL  N +  +    + E    T+  ++N I ++           + + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELLVGPSIE----TLHAANNNISRVS-CSRGQGKKNIYLA 128

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
           NN+IT +         ++  L L  N +  +   +   S   L+ L+L  N I       
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 133 LYVIHKLKSLRVLD 146
           +        L+ LD
Sbjct: 189 V-----FAKLKTLD 197

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 22  RELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
           + LDL+ N+I  +    L A+ D  + ++L  N I  ++      +L TL +++N++  +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            P        +  + L NN+LV + +   L     L+   L  N              K 
Sbjct: 207 GPEFQS-AAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDF--FSKN 261

Query: 140 KSLRVLDFKKVKN 152
           + ++ +  + VK 
Sbjct: 262 QRVQTVAKQTVKK 274

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 58  ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
           E   + NR     + ++ + +   ++ +    +  L L+ N L  +     L    KL+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+L  N + +  +     +  L +LR LD
Sbjct: 63  LNLSSNVLYETLD-----LESLSTLRTLD 86

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 13/103 (12%)

Query: 46  TIDLSDNEIVKL--ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
              ++D+ + +           +  L ++ N +++I+        KL  L L++N    L
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV---L 70

Query: 104 VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            E   L SL  L+ L L +N + +        +    S+  L 
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQE--------LLVGPSIETLH 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 9/140 (6%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTL-I 70
            P F +A     + LR NK+ +IE         +  DL  N           ++   +  
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130
           +    + ++     E                +L    P     +L  L   ++++     
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL----PAPFADRLIALKRKEHALLSGQG 322

Query: 131 YRLYVIHK----LKSLRVLD 146
                +          R +D
Sbjct: 323 SETERLECERENQARQREID 342

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 13/130 (10%), Positives = 36/130 (27%), Gaps = 8/130 (6%)

Query: 22  RELDLRGNKI--AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRI 79
              DLRGN      + +  +   +  T+     + +  +N                   +
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 80  NPNIGEFLPKLH--TLVLTNNRLVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVI 136
                + L  L      L + +      ++    +  + + +  L        +    V 
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID---QVT 356

Query: 137 HKLKSLRVLD 146
            + ++   L+
Sbjct: 357 LRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 13/149 (8%), Positives = 40/149 (26%), Gaps = 6/149 (4%)

Query: 46  TIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104
            +    +E  +LE    +  R   +     +   +   +        TL      L    
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ- 375

Query: 105 EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS 164
             +   +  +L           +  +       +   L++L     + +E         +
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQH----ATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

Query: 165 EEMEEEAKKESMKTLMPVEVPNVSEEEEQ 193
             + +    +  +T +  E   + +   +
Sbjct: 432 NAIRDWDMYQHKETQLAEENARLKKLNGE 460

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
           + L L    +  I         F        I +S +  V L+ +      +L+++  + 
Sbjct: 34  QTLKLIETHLRTIP-----SHAFSNLPNISRIYVSID--VTLQQLESHSFYNLSKVTHIE 86

Query: 71  I-NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
           I N   +T I+P+  + LP L  L + N  L    ++  + S      L + DN 
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 21  ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIIN-NNRIT 77
           E +  +    I  I +L  +     T+ L +  +  + +    +L  +  + ++ +  + 
Sbjct: 13  EEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYV 135
           ++  +    L K+  + + N R  NL  IDP  L  LP L+FL + +  +   P+  L  
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTR--NLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTK 125

Query: 136 IHKLKSLRVLD 146
           ++      +L+
Sbjct: 126 VYSTDIFFILE 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 14/131 (10%)

Query: 22  RELDLRGNKIAVIENLGATE--DQFDTIDLSDNEIVKLENMPH------LNRLGTLIINN 73
           + L +    + +  +L      D F  ++++DN    + ++P        N   TL + N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYN 165

Query: 74  NRITRINPNIGEF-LPKLHTLVLTNNRLVNLVEIDPLTSLP-KLQFLSLLDNSITKKPNY 131
           N  T +      F   KL  + L  N+ + +++ D    +      L +   S+T  P+ 
Sbjct: 166 NGFTSVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 132 RLYVIHKLKSL 142
            L  + +L + 
Sbjct: 224 GLEHLKELIAR 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH-LNRLGTLIINN 73
                +  +L+L   ++  ++ +  T     T+DLS N++  L  +   L  L  L ++ 
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           NR+T +       L +L  L L  N L  L     LT  PKL+ LSL +N++T+ P    
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPA--- 165

Query: 134 YVIHKLKSLRVLD 146
            +++ L++L  L 
Sbjct: 166 GLLNGLENLDTLL 178

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 32/124 (25%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 13  PHFFNAIKERELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKLENM--PHLNRL 66
                      LDL  N++     + + L A       +D+S N +  L       L  L
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALT----VLDVSFNRLTSLPLGALRGLGEL 126

Query: 67  GTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
             L +  N +  + P +    PKL  L L NN L  L     L  L  L  L L +NS+ 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185

Query: 127 KKPN 130
             P 
Sbjct: 186 TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L ++ N +   +        +L  L L       L ++    +LP L  L L  N +   
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P     +   L +L VLD
Sbjct: 93  PL----LGQTLPALTVLD 106

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP-----HLNRLGTLI 70
             LD+  N++  +   GA             + L  N   +L+ +P        +L  L 
Sbjct: 103 TVLDVSFNRLTSLPL-GA----LRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLS 154

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           + NN +T +   +   L  L TL+L  N L  +           L F  L  N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGN 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 17/133 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
           ++LDL+ NK++ + +  A    F        + L+DN++  L       L  L TL + +
Sbjct: 40  KKLDLQSNKLSSLPS-KA----FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
           N++  +   + + L  L  L L  N+L +L       SL KL +LSL  N +   P    
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPK--- 150

Query: 134 YVIHKLKSLRVLD 146
            V  KL SL+ L 
Sbjct: 151 GVFDKLTSLKELR 163

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 20/113 (17%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMPH-----LNRLGTLI 70
            EL L  N++  +         FD       + L  N   +L+++P      L  L  L 
Sbjct: 112 AELRLDRNQLKSLPP-RV----FDSLTKLTYLSLGYN---ELQSLPKGVFDKLTSLKELR 163

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           + NN++ R+     + L +L TL L NN+L  + E     SL KL+ L L +N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 22  RELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIINNN 74
             L +  NK+  +     + L         + L  N++  L       L +L  L +  N
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNL----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            +  +   + + L  L  L L NN+L  + E      L +L+ L L +N + + P     
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 135 VIHKLKSLR 143
            + KLK L+
Sbjct: 203 SLEKLKMLQ 211

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 30/156 (19%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLG 67
           + K P   N+   + +D+  N +  + +   + E     I   +N++ +L  + +L  L 
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE----FIAAGNNQLEELPELQNLPFLT 198

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL--------------- 112
            +  +NN + ++          L ++V  NN L  L E+  L  L               
Sbjct: 199 AIYADNNSLKKLPDLPL----SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD 254

Query: 113 --PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             P L+ L++ DN +T  P     +   L  L V +
Sbjct: 255 LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 29/149 (19%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
           P   N      +    N +  + +L       ++I   +N + +L  + +L  L T+  +
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL-VEIDPLTSL--------------PKLQF 117
           NN +  +          L  L + +N L +L      LT L              P L +
Sbjct: 246 NNLLKTLPDLPP----SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301

Query: 118 LSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L+   N I    +          SL  L+
Sbjct: 302 LNASSNEIRSLCD-------LPPSLEELN 323

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 22/126 (17%)

Query: 22  RELDLRGNKI-AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
              +     +  +   L       + + +S+N++ KL  + + + L  + ++NN + ++ 
Sbjct: 117 LVDNNNLKALSDLPPLL-------EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK 140
               +  P L  +   NN+   L E+  L +LP L  +   +NS+ K P+          
Sbjct: 170 ----DLPPSLEFIAAGNNQ---LEELPELQNLPFLTAIYADNNSLKKLPD-------LPL 215

Query: 141 SLRVLD 146
           SL  + 
Sbjct: 216 SLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 21/125 (16%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L++R N +  +  L         +D+S+N    L  +P    L  L  ++N I  +  
Sbjct: 260 EALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRSLC- 313

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
              +  P L  L ++NN+L+ L         P+L+ L    N + + P          ++
Sbjct: 314 ---DLPPSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPE-------LPQN 358

Query: 142 LRVLD 146
           L+ L 
Sbjct: 359 LKQLH 363

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             LD+  N  + +  L         ++ S NEI  L +      L  L ++NN++  +  
Sbjct: 280 TFLDVSENIFSGLSELP---PNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELPA 334

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                  +L  L+ + N L  + E         L+ L +  N + + P+    +   ++ 
Sbjct: 335 LPP----RLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREFPD----IPESVED 381

Query: 142 LRV 144
           LR+
Sbjct: 382 LRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 27/137 (19%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
            EL++  NK+  +       E     +  S N + ++        L  L +  N +    
Sbjct: 320 EELNVSNNKLIELPALPPRLE----RLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFP 373

Query: 81  PNIG---------------EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125
                              E    L  L +  N L    +         ++ L +    +
Sbjct: 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD-----IPESVEDLRMNSERV 428

Query: 126 TKKPNYRLYVIHKLKSL 142
                +      KL+  
Sbjct: 429 VDPYEFAHETTDKLEDD 445

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 22  RELDLRGNKIAVIE-----NLGATEDQFDTIDLSDNEIVKLENM--PHLNRLGTLIINNN 74
           +  DL  +KI  +      +    E     + L+ NEI K+++     L  L  L ++ N
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLE----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY 134
            +  I+  + E L KL  L L+ N +  L        LP L+ L+L  N +   P+    
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLKSVPD---G 389

Query: 135 VIHKLKSLRVLD 146
           +  +L SL+ + 
Sbjct: 390 IFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 22/155 (14%)

Query: 10  WKSPHFFNAIKERELDLRGNKIAV--------------IENLGATEDQFDTIDLSDNEIV 55
            K  + F       LDL GN                  I++L  +               
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 56  KLENMP----HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS 111
             +N        + + T  ++ ++I  +  ++      L  L L  N +  + + +    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWG 321

Query: 112 LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           L  L  L+L  N +    +    +   L  L VLD
Sbjct: 322 LTHLLKLNLSQNFLGSIDS---RMFENLDKLEVLD 353

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 31/145 (21%), Positives = 47/145 (32%), Gaps = 9/145 (6%)

Query: 7   DLIWKSPHFFNAIKERELDLRGNKIAVIENL---GATEDQFDTIDLSDNEIVKLENM--P 61
                     +                 +N    G       T DLS ++I  L      
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
           H   L  L +  N I +I+ N    L  L  L L+ N L ++ +     +L KL+ L L 
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLS 355

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLD 146
            N I    +        L +L+ L 
Sbjct: 356 YNHIRALGD---QSFLGLPNLKELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEI---VKLENMPHLNRLGTLIIN 72
             +DL  N IA +      E  F        + +        ++      L+ L  L ++
Sbjct: 33  NYVDLSLNSIAELN-----ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNL-VEIDPLTSLPKLQFLSLLDNSITK-KPN 130
            N+  ++       L  L  L LT   L    +  +    L  L+ L L DN+I K +P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 131 YRLYVIHKLKSLRVLD 146
                   ++   VLD
Sbjct: 148 ---SFFLNMRRFHVLD 160

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP--HLNRLGTLIINN 73
            +L L  N+I  I+     ++ F        ++LS N +  +++    +L++L  L ++ 
Sbjct: 302 EQLTLAQNEINKID-----DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 74  NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           N I  +       LP L  L L  N+L ++ +      L  LQ + L  N
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 21/149 (14%), Positives = 41/149 (27%), Gaps = 17/149 (11%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRL 66
           F      + L +      ++         F        + L  N+ ++LE      L  L
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNT----FRGLSSLIILKLDYNQFLQLETGAFNGLANL 105

Query: 67  GTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
             L +    +     +   F  L  L  LVL +N +  +       ++ +   L L  N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 125 ITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153
           +       L      +       +     
Sbjct: 166 VKSICEEDLL---NFQGKHFTLLRLSSIT 191

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 21/161 (13%)

Query: 22  RELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENMP---HLNRLGTLIIN 72
             L L    +   +    + + F        + L DN I K++      ++ R   L + 
Sbjct: 106 EVLTLTQCNL---DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 73  NNRITRINPNIGEFLPKLH--TLVLTNNRLVNL-------VEIDPLTSLPKLQFLSLLDN 123
            N++  I           H   L L++  L ++        +         +  L L  N
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 124 SITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS 164
              +    R +       ++ L      N       + F  
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 5e-11
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 12/157 (7%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKI---AVIENLGATEDQFDTIDLSDNEIVKLE 58
            R+ + +++ +         +EL L   ++   A    L AT    + ++L +      +
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 59  NMPH------LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN---LVEIDPL 109
                        L  L I        +       P L TL L++N  +    L+     
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 110 TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
              P LQ L+L +  +         +      L+ LD
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 16/135 (11%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPH------LNRLGTLIINNN 74
           + L +                    T+DLSDN  +    +           L  L + N 
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 75  RITRINPNIGEF---LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
            +   +           +L  L L++N L +           +L  L+L    + + P  
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK- 270

Query: 132 RLYVIHKLKSLRVLD 146
                     L VLD
Sbjct: 271 -----GLPAKLSVLD 280

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDT----IDLSDNEIVKLENMP---HLNRLGTLIINNN 74
           + L LR   +     + +           +DLS N +      P     ++L +L ++  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126
            + ++   +     KL  L L+ N    L        LP++  LSL  N   
Sbjct: 264 GLKQVPKGL---PAKLSVLDLSYN---RLDRNPSPDELPQVGNLSLKGNPFL 309

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 48  DLSDNEIVKLENM--PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
            LS N I +L       L+ L  L +++NRI  ++ ++  F   L  L +++NRL N+  
Sbjct: 58  SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-- 115

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                 +  L+ L L  N     P  +      L  L  L 
Sbjct: 116 --SCCPMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLG 152

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 43  QFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100
            F  ++ + N            L RL TLI+  N +      +      + +L   +  L
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSL 412

Query: 101 VNL--VEIDPLTSLP-KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            +L     D   +    +  L+L  N +T      L        ++VLD
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-----PPKVKVLD 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            L ++ N I+ +      FL +L  L L++NR+ +L +         L++L +  N +  
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQN 114

Query: 128 KPNYRLYVIHKLKSLRVLD 146
                      + SLR LD
Sbjct: 115 IS------CCPMASLRHLD 127

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 21/135 (15%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPH------LNRLGTLIINNNR 75
           + L L+ N +     +        +++  D  +  L +  +         +  L +++N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 76  ITRINPNIGEF---LPKLHTLVLTNNRLVNL-VEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           +T        F    PK+  L L NNR++++  ++  L +   LQ L++  N +   P+ 
Sbjct: 440 LTG-----SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA---LQELNVASNQLKSVPD- 490

Query: 132 RLYVIHKLKSLRVLD 146
              V  +L SL+ + 
Sbjct: 491 --GVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 48  DLSDNEIVKLENMP--HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
            LS ++   +  +     +    L    N  T         L +L TL+L  N L N  +
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 106 I-DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           +     ++  L+ L +  NS+      R       +S+ VL+
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRT--CAWAESILVLN 434

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           ++D  ++ I  +  +  L  L  LI  +N IT ++ +       L  L   +N+L NL  
Sbjct: 46  SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQ---NTNLTYLACDSNKLTNL-- 100

Query: 106 IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
              +T L KL +L+   N +TK        + +   L  L+
Sbjct: 101 --DVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLN 133

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L+   N +  I+    T  Q   +D   N+ +   ++    +L TL  + N+IT ++ 
Sbjct: 130 TYLNCARNTLTEIDVSHNT--QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV 187

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                   L+ L    N +  L     L    +L FL    N +T+        +  L  
Sbjct: 188 ---SQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID------VTPLTQ 234

Query: 142 LRVLD 146
           L   D
Sbjct: 235 LTYFD 239

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             LD   + I  +  +         +  + N I  L ++     L  L  ++N++T ++ 
Sbjct: 45  TSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLDV 102

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                L KL  L    N+L  L     ++  P L +L+   N++T+        +     
Sbjct: 103 T---PLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEID------VSHNTQ 149

Query: 142 LRVLDF 147
           L  LD 
Sbjct: 150 LTELDC 155

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             L      +  I+    T  Q           +K  ++ H  +L  L      IT ++ 
Sbjct: 257 TTLHCIQTDLLEIDLTHNT--QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           +     PKL  L L N  L  L     ++   KL+ LS ++  I          + K+ +
Sbjct: 315 S---QNPKLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQD-----FSSVGKIPA 362

Query: 142 LRVLD 146
           L    
Sbjct: 363 LNNNF 367

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            ELD   NK     ++     Q  T+D S N+I +L ++     L  L  + N IT+++ 
Sbjct: 151 TELDCHLNKKITKLDVTPQT-QLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKLDL 208

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           N      +L  L  ++N+L  +     +T L +L +     N +T+        +  L  
Sbjct: 209 N---QNIQLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLTELD------VSTLSK 255

Query: 142 LRVLD 146
           L  L 
Sbjct: 256 LTTLH 260

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 15/126 (11%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             LD   NK+  I+    T+      D S N + +L ++  L++L TL      +  I+ 
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLT--YFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEIDL 271

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                  +L             ++   +T   +L  L      IT+        + +   
Sbjct: 272 T---HNTQLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGITELD------LSQNPK 319

Query: 142 LRVLDF 147
           L  L  
Sbjct: 320 LVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 12  SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLII 71
                   +   LD   NKI  ++           ++   N I KL ++    +L  L  
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELDVSQNKLLN--RLNCDTNNITKL-DLNQNIQLTFLDC 219

Query: 72  NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY 131
           ++N++T I+      L +L     + N L  L     +++L KL  L  +   + +    
Sbjct: 220 SSNKLTEIDVTP---LTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDLLEID-- 270

Query: 132 RLYVIHKLKSLRVLDFKKVKN 152
               +     L     +  + 
Sbjct: 271 ----LTHNTQLIYFQAEGCRK 287

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 4e-10
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 49  LSDNEIVKLENMPHLNRLGTLII-NNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
             D  +  L ++P    L  L I N   +  +       L +L  L +  + L   V  D
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPD 74

Query: 108 PLTSLPKLQFLSLLDNSITKKP 129
                P+L  L+L  N++    
Sbjct: 75  AFHFTPRLSRLNLSFNALESLS 96

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 5e-10
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 46  TIDLSDN-EIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
            + + +   +  LE   +  L  L  L I  + +  + P+   F P+L  L L+ N L +
Sbjct: 35  ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94

Query: 103 LVEIDPLTSLPKLQFLSLLDNSIT 126
           L     +  L  LQ L L  N + 
Sbjct: 95  LSW-KTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 68  TLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK 127
            L    +       ++      L  L + N + +  +E+  L  L +L+ L+++ + +  
Sbjct: 12  GLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 128 KPNYRLYVIHKLKSLRVLD 146
                    H    L  L+
Sbjct: 71  VAP---DAFHFTPRLSRLN 86

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 6/134 (4%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDN-EIVKLENMP---HLNRLGTLIINNNRI 76
           + L +    I  + +       Q   +D+ DN  I  +E             L +N N I
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI 136
             I+ +           +  NN L  L   D          L +    I   P+Y L  +
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 137 HKLKSLRVLDFKKV 150
            KL++    + KK+
Sbjct: 226 KKLRARSTYNLKKL 239

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 26/128 (20%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITR-IN 80
            EL     K+ VI+     +  F                     L  + I+ N +   I 
Sbjct: 33  IELRFVLTKLRVIQ-----KGAFS----------------GFGDLEKIEISQNDVLEVIE 71

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138
            ++   LPKLH + +      NL+ I+P    +LP LQ+L + +  I   P+       +
Sbjct: 72  ADVFSNLPKLHEIRIEKAN--NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 139 LKSLRVLD 146
              L + D
Sbjct: 130 KVLLDIQD 137

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSD-NEIVKLEN--MPHLNRLGTLIINNNRITR 78
             L L  N I  I N      Q D ++LSD N + +L N      +    L I+  RI  
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

Query: 79  INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124
           +     E L KL      N +     ++  L  L  L   SL   S
Sbjct: 217 LPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYPS 257

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
             L++  + +  + + L A      T+ + DN +  L        L TL ++ N++T + 
Sbjct: 43  AVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP 97

Query: 81  PNIGEFLPKLHTLVLTNNRLV----NLVEID----PLTSLPK----LQFLSLLDNSITKK 128
                 L +L         L      L ++      LTSLP     LQ LS+ DN +   
Sbjct: 98  VLPPG-LLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL 156

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P     +  +L  L   +
Sbjct: 157 PA----LPSELCKLWAYN 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 9e-09
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 22  RELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80
           +EL +  N++A +         +   +   +N +  L  +P  + L  LI++ NR+T + 
Sbjct: 184 QELSVSDNQLASLPTLPS----ELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLP 237

Query: 81  PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK 140
                   +L  L+++ NRL +L    P      L  LS+  N +T+ P      +  L 
Sbjct: 238 VLPS----ELKELMVSGNRLTSL----P-MLPSGLLSLSVYRNQLTRLPES----LIHLS 284

Query: 141 SLRVLD 146
           S   ++
Sbjct: 285 SETTVN 290

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            +L + GN++  +  L         + +SDN++  L      + L  L   NN++T +  
Sbjct: 124 CKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPM 178

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
                   L  L +++N+L +L          +L  L   +N +T  P         LK 
Sbjct: 179 LPS----GLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPAL----PSGLKE 225

Query: 142 LRVLD 146
           L V  
Sbjct: 226 LIVSG 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 22  RELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRIT 77
            +L    N++    A+   L         + +S N +  L      + L  L+++ NR+T
Sbjct: 204 YKLWAYNNRLTSLPALPSGLK-------ELIVSGNRLTSLP--VLPSELKELMVSGNRLT 254

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            +          L +L +  N+L  L E   L  L     ++L  N ++++    
Sbjct: 255 SLPMLPS----GLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERTLQA 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 53  EIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL 112
            +V+       N    L +  + +T +   +      + TLV+ +N L +L         
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA-----LP 80

Query: 113 PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           P+L+ L +  N +T  P     +   L  L +  
Sbjct: 81  PELRTLEVSGNQLTSLPV----LPPGLLELSIFS 110

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 22/138 (15%)

Query: 22  RELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRI 76
             L+LR   +         L   +     + +    +++L + M     L TL +  N +
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQ----HMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 77  TRINPNIGEFLPKLHTLVLT-NNRLV-------NLVEIDPLTSLPKLQFLSLLDNSITKK 128
             +  +I   L +L  L +     L        +         L  LQ L L    I   
Sbjct: 140 RALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P      I  L++L+ L 
Sbjct: 199 PAS----IANLQNLKSLK 212

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%)

Query: 15  FFNAIKERELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTL 69
            F     + + +    +      ++     E    T+ L+ N +  L  ++  LNRL  L
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLE----TLTLARNPLRALPASIASLNRLREL 155

Query: 70  II-NNNRITRINPNIG--------EFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFL 118
            I     +T +   +         + L  L +L L    + +L    P  + +L  L+ L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSL 211

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            + ++ ++         IH L  L  LD
Sbjct: 212 KIRNSPLSALGP----AIHHLPKLEELD 235

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 20/138 (14%)

Query: 22  RELDLRG-NKIAVI-ENLGATEDQFD--------TIDLSDNEIVKL-ENMPHLNRLGTLI 70
           REL +R   ++  + E L +T+   +        ++ L    I  L  ++ +L  L +L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212

Query: 71  INNNRITRINPNIGEFLPKLHTLVLT-NNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKK 128
           I N+ ++ + P I   LPKL  L L     L N   I        L+ L L D +++   
Sbjct: 213 IRNSPLSALGPAIHH-LPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTL 269

Query: 129 PNYRLYVIHKLKSLRVLD 146
           P      IH+L  L  LD
Sbjct: 270 PL----DIHRLTQLEKLD 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 46  TIDLSDNEIV-KLENMPHLNRLGTLIINNNRITRINPNIGEF--LPKLHTLVLTNNRLVN 102
           ++ LS++ I   +        L +L ++ N ++     +        L  L +++N L  
Sbjct: 81  SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 103 LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             ++     L  L+ L L  NSI+        +      L+ L 
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 41/176 (23%)

Query: 4   LTADLIWKSPHFFNAIKERELDLRGNK----IAVIENLGATEDQFDTIDLSDN----EIV 55
           L       S    +      L L  +     ++  +   +      ++DLS N     + 
Sbjct: 62  LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLT----SLDLSRNSLSGPVT 117

Query: 56  KLENMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRL-------------- 100
            L ++   + L  L +++N +      + G  L  L  L L+ N +              
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 101 VNLVEID----------PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
             L  +            ++    L+FL +  N+ +      +  +    +L+ LD
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG----IPFLGDCSALQHLD 229

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 22  RELDLRGNK--------IAVIENLGATEDQFDTIDLSDNEI---VKLENMPHLNRLGTLI 70
             LDL GN               L       +++ LS N     + ++ +  +  L  L 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLL-------ESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 71  INNNRIT-RINPNIGEFLPKLHTLVLTNNRLV-NLVEIDPLTSLPKLQFLSLLDNSITKK 128
           ++ N  +  +  ++      L TL L++N     ++          LQ L L +N  T K
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 129 -PNYRLYVIHKLKSLRVLDF 147
            P      +     L  L  
Sbjct: 410 IPPT----LSNCSELVSLHL 425

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 27/148 (18%)

Query: 12  SPHFFNAIKERELDLRGNKI-----AVIENLGATEDQFDTIDLSDN----EIVKLENMPH 62
            P   N  +   L L  N +     + + +L    D    + L  N    EI   + + +
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD----LKLWLNMLEGEI--PQELMY 464

Query: 63  LNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEIDP--LTSLPKLQFLS 119
           +  L TLI++ N +T  I   +      L+ + L+NNRL   +   P  +  L  L  L 
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEI---PKWIGRLENLAILK 520

Query: 120 LLDNSITKK-PNYRLYVIHKLKSLRVLD 146
           L +NS +   P      +   +SL  LD
Sbjct: 521 LSNNSFSGNIPAE----LGDCRSLIWLD 544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 40/147 (27%)

Query: 13  PHFFNAIKERELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEI---VKLENMPHLN 64
           P   +    + LD+ GNK+       I      +     +++S N+    +    +  L 
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELK----LLNISSNQFVGPIPPLPLKSLQ 272

Query: 65  RLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLV-----------NLVEID----- 107
               L +  N+ T  I   +      L  L L+ N               L  +      
Sbjct: 273 ---YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 108 --------PLTSLPKLQFLSLLDNSIT 126
                    L  +  L+ L L  N  +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 16/114 (14%)

Query: 22  RELDLRGNKI-----AVIENLGATEDQFDTIDLSDNEIV-KL-ENMPHLNRLGTLIINNN 74
           R+L L  N +       +  +       +T+ L  N++  ++   + +   L  + ++NN
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVK----TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 75  RIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSIT 126
           R+T  I   IG  L  L  L L+NN       I   L     L +L L  N   
Sbjct: 501 RLTGEIPKWIGR-LENLAILKLSNNSFSG--NIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 31/149 (20%)

Query: 12  SPHFFNAIKERELDLRGNK--------IAVIENLGATEDQFDTIDLSDNEI---VKLENM 60
                       LDL  N           + +  G  +     + +S N+I   V +   
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK----HLAISGNKISGDVDVSRC 199

Query: 61  PHLNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTNNRLVNLVEI-DPLTSLPKLQFL 118
            +L     L +++N  +  I P +G+    L  L ++ N+L    +    +++  +L+ L
Sbjct: 200 VNLE---FLDVSSNNFSTGI-PFLGD-CSALQHLDISGNKLSG--DFSRAISTCTELKLL 252

Query: 119 SLLDNSITKK-PNYRLYVIHKLKSLRVLD 146
           ++  N      P         LKSL+ L 
Sbjct: 253 NISSNQFVGPIPP------LPLKSLQYLS 275

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRI 79
            EL L GN+  ++    +       IDLS+N I  L N    ++ +L TLI++ NR+  I
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 80  NPNIGEFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDN 123
            P   + L  L  L L  N +  + E   + L++   L  L++  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA---LSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 45  DTIDLSDNEIVKLENM---PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV 101
             + L+DNE+ ++ +      L  L  L +  N++T I PN  E    +  L L  N+  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-- 89

Query: 102 NLVEIDPLTSLP--------KLQFLSLLDNSITKKPN 130
                  +  +         +L+ L+L DN I+    
Sbjct: 90  -------IKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 25/116 (21%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRIT 77
            EL L  N++  I + G          ++L  N++  +E       + +  L +  N+I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 78  RINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLP--------KLQFLSLLDN 123
            I  N   F  L +L TL L +N+         ++ +          L  L+L  N
Sbjct: 92  EI-SN-KMFLGLHQLKTLNLYDNQ---------ISCVMPGSFEHLNSLTSLNLASN 136

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 29/129 (22%)

Query: 22  RELDLRGNKI----AVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRIT 77
             L++  N +     +  +L       + +D  DN +  L        L  L ++NN++T
Sbjct: 83  TVLEITQNALISLPELPASL-------EYLDACDNRLSTLP--ELPASLKHLDVDNNQLT 133

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH 137
            +          L  +   NN+L  L E         L+ LS+ +N +T  P        
Sbjct: 134 MLPELPA----LLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE------- 177

Query: 138 KLKSLRVLD 146
             +SL  LD
Sbjct: 178 LPESLEALD 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
             ++   N++     L       + + + +N++  L  +P    L  L ++ N +  +  
Sbjct: 143 EYINADNNQL---TMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA 197

Query: 82  NIGE---FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL 133
                              NR+ ++ E   + SL     + L DN ++ +    L
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRIRESL 250

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 48  DLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
             + NE V L     +N+   L +N   ++ +  N+    P++  L +T N L++L    
Sbjct: 43  GENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISL---- 95

Query: 108 PLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                  L++L   DN ++  P     +   LK L V +
Sbjct: 96  -PELPASLEYLDACDNRLSTLPE----LPASLKHLDVDN 129

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 26/135 (19%)

Query: 22  RELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITR 78
            +LDL+   +A +         +   ++L  N++  L       L  LGTL + NN++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 79  INPNIGEFLPKLHTLVLTNN-----------RLVNLVEID----PLTSLP--------KL 115
           +   + + L +L  L L  N           RL  L E+      L S+P         L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 116 QFLSLLDNSITKKPN 130
           Q LSL  N +   P+
Sbjct: 158 QTLSLSTNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 23  ELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLEN--MPHLNRLGTLIINNN 74
            L L  N++A +         FD       + L  N++  L +     L +L  L +N N
Sbjct: 87  TLGLANNQLASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 75  RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           ++  I     + L  L TL L+ N+L + V       L KLQ ++L  N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 34/150 (22%), Positives = 52/150 (34%), Gaps = 35/150 (23%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFD------TIDLSDNEIVKLENM--PHLN 64
                    R L L GNK+    ++ A             + L+ N++  L N     L 
Sbjct: 57  QGIQYLPNVRYLALGGNKL---HDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLT 109

Query: 65  RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP--------KLQ 116
            L  L++  N++  +   + + L  L  L L +N+L          SLP         L 
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL---------QSLPKGVFDKLTNLT 160

Query: 117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
            L L  N +   P     V  KL  L+ L 
Sbjct: 161 ELDLSYNQLQSLPE---GVFDKLTQLKDLR 187

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 13  PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIIN 72
                     ++    + I  ++ +         + L  N++  +  +  L  L  LI+ 
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILT 93

Query: 73  NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            N++  +   + + L  L  LVL  N+L +L        L  L +L+L  N +   P   
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK-- 150

Query: 133 LYVIHKLKSLRVLD 146
             V  KL +L  LD
Sbjct: 151 -GVFDKLTNLTELD 163

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 22/114 (19%)

Query: 22  RELDLRGNKIAVIENLGATED--QFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRIT 77
             L L GN++  + N G  +       + L +N++  L +     L  L  L + +N++ 
Sbjct: 88  TYLILTGNQLQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 78  RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP--------KLQFLSLLDN 123
            +   + + L  L  L L+ N+         L SLP        +L+ L L  N
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQ---------LQSLPEGVFDKLTQLKDLRLYQN 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 5e-06
 Identities = 42/280 (15%), Positives = 77/280 (27%), Gaps = 74/280 (26%)

Query: 36  NLGATEDQFDTIDLSDNEIVK-----LENMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90
           N  +  D    I L  + I       L++ P+ N L  L++ N +  +       F    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKA---WNAFNLSC 266

Query: 91  HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150
             L+ T  + V     D             L  + T      + + H   +L        
Sbjct: 267 KILLTTRFKQV----TD------------FLSAATTT----HISLDHHSMTL-------- 298

Query: 151 KNKERMEAASLFASE-EMEEEAKKESMKTLMPVEVPNVSEEEE------QQTPKVVAPTP 203
                 E  SL     +   +     + T  P  +  ++E              V     
Sbjct: 299 ---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 204 EQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSG------SKDVKENDEKM 257
             II    + +N     E  ++   L     P    IP   +          +K +   +
Sbjct: 356 TTIIE---SSLNVLEPAEYRKMFDRL--SVFPPSAHIP---TILLSLIWFDVIKSDVMVV 407

Query: 258 VPDVENEADVEPNNVEN------------QKNDELAAMEQ 285
           V  +   + VE    E+             K +   A+ +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 22/112 (19%)

Query: 45  DTIDLSDNEIVKLENMP--HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
             +DL  N +  L N     L  L  L +  N++  +   +   L  L  L L+ N+   
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--- 87

Query: 103 LVEIDPLTSLP--------KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
                 L SLP        +L+ L+L  N +   P+    V  KL  L+ L 
Sbjct: 88  ------LQSLPNGVFDKLTQLKELALNTNQLQSLPD---GVFDKLTQLKDLR 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 22  RELDLRGNKIAVIENL---GATEDQFDTIDLSDNEIVKLEN--MPHLNRLGTLIINNNRI 76
           + L L  N+I  +E          +   + L  N++  L       L +L  L +  N++
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKE--LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 77  TRINPNIGEFLPKLHTLVLTNNRLVNLVE-IDPLTSLPKLQFLSLLDNSITKKPN 130
           T +   + + L  L  L +  N+L  L   I+ LT    L  L+L  N +   P+
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT---HLTHLALDQNQLKSIPH 152

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 22/105 (20%)

Query: 48  DLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
           +L  N++  L +     L +L  L ++ N+I  +   + + L KL  L L  N+      
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK------ 87

Query: 106 IDPLTSLP--------KLQFLSLLDNSITKKPNYRLYVIHKLKSL 142
              L SLP        +L+ L+L  N +   P+    +  +L SL
Sbjct: 88  ---LQSLPNGVFDKLTQLKELALDTNQLKSVPD---GIFDRLTSL 126

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 34/112 (30%)

Query: 46  TIDLSDNEIVK-------LENMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLHTLVLTN 97
            +DLS   + K       L N+P+LN L   I   N +   I P I + L +LH L +T+
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLY--IGGINNLVGPIPPAIAK-LTQLHYLYITH 110

Query: 98  NR-----------LVNLVEID----------P--LTSLPKLQFLSLLDNSIT 126
                        +  LV +D          P  ++SLP L  ++   N I+
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.45
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.44
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.97
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.21
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	85.34

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.93  E-value=9.5e-26  Score=183.53  Aligned_cols=172  Identities=56%  Similarity=0.848  Sum_probs=150.4

Q ss_pred             CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142            1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN   80 (286)
Q Consensus         1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~   80 (286)
                      |+++|.+.|.+.+.+.++++|+.|++++|+++.+|......++|++|++++|.|+.++.|..+++|++|++++|+|+.++
T Consensus         1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A            1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred             CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence            89999999999999999999999999999999998755545599999999999999989999999999999999999999


Q ss_pred             CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142           81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS  160 (286)
Q Consensus        81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  160 (286)
                      +..|..+++|++|++++|.|+.++.+..+..+++|+.|++++|+++.+|.++...+..+++|++|+++.|...++..+..
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~  160 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK  160 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHH
T ss_pred             cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHH
Confidence            88878999999999999999998765578899999999999999999998766679999999999999999999998888


Q ss_pred             HhhcchhHHHHH
Q 023142          161 LFASEEMEEEAK  172 (286)
Q Consensus       161 ~~~~~~~~~~~~  172 (286)
                      +|.+.....+..
T Consensus       161 ~~~~~~~~~l~~  172 (176)
T 1a9n_A          161 MFKGKRGAQLAK  172 (176)
T ss_dssp             TTC---------
T ss_pred             HHhccchHHHHH
Confidence            888777555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=7.1e-24  Score=184.14  Aligned_cols=201  Identities=18%  Similarity=0.150  Sum_probs=159.4

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP   81 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~   81 (286)
                      +..+.+...+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++
T Consensus        48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  126 (272)
T 3rfs_A           48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD  126 (272)
T ss_dssp             CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             eCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence            44455666777888888999999988888775 4566888999999999888775  37888889999999998888888


Q ss_pred             ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHH
Q 023142           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASL  161 (286)
Q Consensus        82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  161 (286)
                      ..+..+++|++|++++|.|+.+++ ..|..+++|+.|++++|+++.++..   .+..+++|++|++++|.+..+      
T Consensus       127 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~------  196 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLKDLRLYQNQLKSV------  196 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCC------
T ss_pred             HHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH---HhcCCccCCEEECCCCcCCcc------
Confidence            777788889999999998888876 5678888899999999988877764   467888899999988875421      


Q ss_pred             hhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142          162 FASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP  241 (286)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~  241 (286)
                                        .+..+      ..+.+|+.+++++|.+.      +.|+.|+.+++..|.+. |.||..++..
T Consensus       197 ------------------~~~~~------~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~-g~ip~~~~~~  245 (272)
T 3rfs_A          197 ------------------PDGVF------DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHS-GVVRNSAGSV  245 (272)
T ss_dssp             ------------------CTTTT------TTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTG-GGBBCTTSCB
T ss_pred             ------------------CHHHH------hCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCC-CcccCccccc
Confidence                              11111      24678999999999765      56889999999999995 8999998877


Q ss_pred             CCCCC
Q 023142          242 DYDSG  246 (286)
Q Consensus       242 ~~~~~  246 (286)
                      .....
T Consensus       246 ~~~~~  250 (272)
T 3rfs_A          246 APDSA  250 (272)
T ss_dssp             CGGGS
T ss_pred             CCCCC
Confidence            66443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=8.5e-25  Score=195.22  Aligned_cols=198  Identities=17%  Similarity=0.161  Sum_probs=116.6

Q ss_pred             cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCc-ccCCcc--------c
Q 023142           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRIT-RINPNI--------G   84 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~-~l~~~~--------~   84 (286)
                      +.++++|++|++++|.++.+|..+..+++|++|+|++|.++.+| .+..+++|++|++++|++. .+|...        +
T Consensus       100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            44455555555555555555554455555555555555555554 4455555555555554332 232222        1


Q ss_pred             cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhc
Q 023142           85 EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS  164 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  164 (286)
                      .++++|++|++++|.|+.+|.  .+..+++|++|++++|.++.+|.    .+..+++|++|++++|.+.           
T Consensus       180 ~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~~-----------  242 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTAL-----------  242 (328)
T ss_dssp             EESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTTC-----------
T ss_pred             ccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcch-----------
Confidence            125555555555555555443  35555555555555555555544    3455555555555555321           


Q ss_pred             chhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCC
Q 023142          165 EEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  243 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~  243 (286)
                                   ...|..+      +.+.+|+.+++++|.+. .+|..++++++|+.|++++|.+ .|.+|..+.....
T Consensus       243 -------------~~~p~~~------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~  302 (328)
T 4fcg_A          243 -------------RNYPPIF------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPA  302 (328)
T ss_dssp             -------------CBCCCCT------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCT
T ss_pred             -------------hhhHHHh------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccC
Confidence                         1112111      35778999999998776 8898999999999999999998 4899999888776


Q ss_pred             CCCCcc
Q 023142          244 DSGSKD  249 (286)
Q Consensus       244 ~~~~~~  249 (286)
                      ...++.
T Consensus       303 L~~l~l  308 (328)
T 4fcg_A          303 NCIILV  308 (328)
T ss_dssp             TCEEEC
T ss_pred             ceEEeC
Confidence            554433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=1e-20  Score=157.44  Aligned_cols=181  Identities=17%  Similarity=0.156  Sum_probs=110.3

Q ss_pred             cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (286)
Q Consensus        22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~   99 (286)
                      +.++++++.++.+|..+  .++|++|++++|.++.++  .|..+++|++|++++|+++.+++..|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45566666666666433  345666666666666554  25566666666666666666665555566666666666666


Q ss_pred             CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccC
Q 023142          100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTL  179 (286)
Q Consensus       100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (286)
                      |+.+++ ..|..+++|++|++++|.++.++..   .+..+++|++|++++|.+..+                        
T Consensus        88 l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~------------------------  139 (208)
T 2o6s_A           88 LQSLPN-GVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSV------------------------  139 (208)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCC------------------------
T ss_pred             CCccCH-hHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCcccee------------------------
Confidence            666654 4456666666666666666655543   345666666666666653211                        


Q ss_pred             CCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCC
Q 023142          180 MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS  245 (286)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~  245 (286)
                      .+..+      ..+.+|+.+++++|.+.      +.+++|+.|++..|.+. |.||..+.....+.
T Consensus       140 ~~~~~------~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~-g~ip~~~~~l~~~~  192 (208)
T 2o6s_A          140 PDGVF------DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHS-GVVRNSAGSVAPDS  192 (208)
T ss_dssp             CTTTT------TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCT-TTBBCTTSSBCTTC
T ss_pred             CHHHh------ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCC-ceeeccCccccCCc
Confidence            00000      12445666666666433      45678999999999995 89999888766533

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=8.5e-23  Score=178.15  Aligned_cols=201  Identities=19%  Similarity=0.192  Sum_probs=111.8

Q ss_pred             CCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCc-CcccCCccccCCCCccEE
Q 023142           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNR-ITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L   93 (286)
                      .++|+.|++++|.++.++ ..+..+++|++|++++|.++.+ + .|..+++|++|++++|+ ++.+++..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            345666666666666555 3455566666666666666655 2 45666666666666665 666655555566666666


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK  173 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      ++++|.++.+++ ..+.++++|++|++++|.++.++..   .+..+++|++|++++|.+..++.  ..|....      .
T Consensus       111 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~------~  178 (285)
T 1ozn_A          111 HLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPE--RAFRGLH------S  178 (285)
T ss_dssp             ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECT--TTTTTCT------T
T ss_pred             ECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCH--HHhcCcc------c
Confidence            666666666554 4556666666666666666655542   35556666666666665442210  0011110      0


Q ss_pred             hhcccCCCCCCCCC--ChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142          174 ESMKTLMPVEVPNV--SEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       174 ~~~~~~~~~~~~~~--~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~  230 (286)
                      +....+....+..+  .....+.+|+.+++++|+++.++ ..+..+++|+.|++++|.+.
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            00000000000000  01124667888888888888665 45777888888888777763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=2.3e-22  Score=174.37  Aligned_cols=131  Identities=28%  Similarity=0.364  Sum_probs=97.9

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|++++|+++.++ ..+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++..|..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            56777888888777776 35667777888888888777775  3567778888888888887777777777777888888


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      ++|.|+.+++ ..|..+++|++|++++|.++.++..   .+..+++|+.|++++|.+.
T Consensus       117 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          117 DRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCc
Confidence            8887777776 5677777788888888877777653   4667777888888777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.7e-22  Score=181.64  Aligned_cols=216  Identities=18%  Similarity=0.163  Sum_probs=151.8

Q ss_pred             CcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC-ccccCCCC
Q 023142           14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP-NIGEFLPK   89 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~   89 (286)
                      .|.++++|+.|++++|.++.++ ..+..+++|++|++++|.++.++  .|..+++|++|++++|+++.++. ..+..+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            4777888888888888888664 55777888888888888888776  27778888888888888888776 56677888


Q ss_pred             ccEEEeecC-cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH-Hhhcchh
Q 023142           90 LHTLVLTNN-RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS-LFASEEM  167 (286)
Q Consensus        90 L~~L~Ls~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~  167 (286)
                      |++|++++| .++.+++ ..|.++++|++|++++|.++.+...   .+..+++|++|++++|.+..++.... .+.....
T Consensus       151 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  226 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC  226 (353)
T ss_dssp             CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEE
T ss_pred             CcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchhhhhhhcccccE
Confidence            888888887 4777665 5678888888888888888866332   67888889999999988766543221 1111111


Q ss_pred             HHHHHhhhcccCCCCCCCCCC-----hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCc
Q 023142          168 EEEAKKESMKTLMPVEVPNVS-----EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK  239 (286)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~  239 (286)
                      ..    +....+.......++     .......+..+.++++.+..+|..+..+++|++|++++|.++  .||..++
T Consensus       227 L~----L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~  297 (353)
T 2z80_A          227 LE----LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIF  297 (353)
T ss_dssp             EE----EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTT
T ss_pred             EE----CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHH
Confidence            10    011111110000000     001233577889999999999999999999999999999994  7998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=5.2e-23  Score=183.59  Aligned_cols=198  Identities=16%  Similarity=0.131  Sum_probs=166.2

Q ss_pred             CCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEee
Q 023142           18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT   96 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls   96 (286)
                      .++++.|++++|.++.+|..+..+++|++|+|++|.++.+| .++.+++|++|+|++|+++.+|.. +..+++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECC
Confidence            47899999999999999988888999999999999999888 689999999999999999988665 5699999999999


Q ss_pred             cCcCCC-CCCCccCC---------CCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142           97 NNRLVN-LVEIDPLT---------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE  166 (286)
Q Consensus        97 ~N~i~~-~~~~~~l~---------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  166 (286)
                      +|.+.+ +|.  .+.         ++++|++|++++|.++.+|.    .+..+++|++|++++|.+..++          
T Consensus       159 ~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~~l~----------  222 (328)
T 4fcg_A          159 ACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSALG----------  222 (328)
T ss_dssp             EETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCCCCC----------
T ss_pred             CCCCccccCh--hHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCCcCc----------
Confidence            976554 543  443         49999999999999999998    6899999999999999854221          


Q ss_pred             hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCC
Q 023142          167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS  245 (286)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~  245 (286)
                                           +....+.+|+.+++++|.+. .+|..++.+++|++|++++|.+ .+.+|..+.......
T Consensus       223 ---------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          223 ---------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLE  280 (328)
T ss_dssp             ---------------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCC
T ss_pred             ---------------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCC
Confidence                                 01124678999999998877 8888999999999999999988 489999887776655


Q ss_pred             CCccccccc
Q 023142          246 GSKDVKEND  254 (286)
Q Consensus       246 ~~~~~~~~~  254 (286)
                      .++.-....
T Consensus       281 ~L~L~~n~~  289 (328)
T 4fcg_A          281 KLDLRGCVN  289 (328)
T ss_dssp             EEECTTCTT
T ss_pred             EEeCCCCCc
Confidence            555544333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=1.3e-22  Score=179.43  Aligned_cols=179  Identities=20%  Similarity=0.239  Sum_probs=107.1

Q ss_pred             HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142            8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus         8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      .+...+.+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.+++  +..+
T Consensus        52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l  128 (308)
T 1h6u_A           52 GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL  128 (308)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTC
T ss_pred             CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCC
Confidence            34444445555555555555555555554 44455555555555555555555555555555555555555532  3455


Q ss_pred             CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchh
Q 023142           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEM  167 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  167 (286)
                      ++|++|++++|.++.+++   +..+++|+.|++++|.++.++.     +..+++|+.|++++|.+..             
T Consensus       129 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~-------------  187 (308)
T 1h6u_A          129 SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKISD-------------  187 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC-------------
T ss_pred             CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCccCc-------------
Confidence            555555555555555443   4455555555555555555443     4455555555555554332             


Q ss_pred             HHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          168 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                         ++....+.+|+.+++++|+++.+++ +..+++|+.|++++|.+.
T Consensus       188 -------------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          188 -------------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -------------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             -------------------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence                               1222346689999999999987774 888999999999999984

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=6.9e-22  Score=182.87  Aligned_cols=188  Identities=26%  Similarity=0.295  Sum_probs=108.6

Q ss_pred             CCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ..|.++++|+.|+|++|.|+.++ ..+..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|..+++
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS  161 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence            34555566666666666665554 44555566666666666666554  3555666666666666666665555555666


Q ss_pred             ccEEEeec-CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhH
Q 023142           90 LHTLVLTN-NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEME  168 (286)
Q Consensus        90 L~~L~Ls~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  168 (286)
                      |++|++++ |.+..++. ..|.++++|++|++++|.++.+|.     +..+++|+.|++++|.+..+             
T Consensus       162 L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~-------------  222 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAI-------------  222 (440)
T ss_dssp             CCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCCCEE-------------
T ss_pred             cCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCccCcc-------------
Confidence            66666665 33444444 455566666666666666666554     45566666666666654321             


Q ss_pred             HHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142          169 EEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPADL  238 (286)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~~g~iP~~~  238 (286)
                                 .+..+      ..+.+|+.+++++|+++.++ .++.++++|++|++++|.++  .+|...
T Consensus       223 -----------~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~  274 (440)
T 3zyj_A          223 -----------RPGSF------QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT--LLPHDL  274 (440)
T ss_dssp             -----------CTTTT------TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC--CCCTTT
T ss_pred             -----------Chhhh------ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC--ccChhH
Confidence                       11111      23556777777777777443 45667777777777777773  455444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=3.2e-22  Score=185.73  Aligned_cols=205  Identities=22%  Similarity=0.239  Sum_probs=109.1

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++  .|.++++|++|+|++|+|+.+++..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45666666666666543 44555666666666666666553  4556666666666666666665555555666666666


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecC-CcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE  174 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      ++|.|+.++. ..|.++++|+.|++++ |.+..++..   .+..+++|++|++++|.+..++.    +....      .+
T Consensus       155 ~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~----~~~l~------~L  220 (452)
T 3zyi_A          155 RNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPN----LTPLV------GL  220 (452)
T ss_dssp             CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCCC----CTTCT------TC
T ss_pred             CCCCcceeCH-hHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCccccccc----ccccc------cc
Confidence            6666665554 4555555555555555 344444432   34555555555555555443210    11000      00


Q ss_pred             hcccCCCCCCCCC-C-hhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCc
Q 023142          175 SMKTLMPVEVPNV-S-EEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLK  239 (286)
Q Consensus       175 ~~~~~~~~~~~~~-~-~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~  239 (286)
                      ....+....+..+ + ....+.+|+.+++++|+++.+ |.++..+++|++|++++|.++  .+|....
T Consensus       221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~  286 (452)
T 3zyi_A          221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS--SLPHDLF  286 (452)
T ss_dssp             CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTSS
T ss_pred             cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC--ccChHHh
Confidence            0001111111101 0 112456777777777777744 456777777777777777773  4555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=1.7e-22  Score=199.33  Aligned_cols=240  Identities=18%  Similarity=0.166  Sum_probs=161.3

Q ss_pred             CCCcCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~   88 (286)
                      |..+.++++|+.|++++|+++ .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|++++..+..+..++
T Consensus       411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence            456777888888888888887 66777777888888888888888 445 678888888999999888876666677888


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChH-HHHHHHHHhhcc-
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNK-ERMEAASLFASE-  165 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~-  165 (286)
                      +|++|++++|++++..+ ..++.+++|++|++++|+++ .+|.    .++.+++|++|++++|.+. .++..  +|... 
T Consensus       491 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~g~ip~~--~~~~~~  563 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAA--MFKQSG  563 (768)
T ss_dssp             TCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEEECCSSEEESBCCGG--GGTTTT
T ss_pred             CCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEEECCCCccCCcCChH--Hhcccc
Confidence            99999999998886554 47888889999999999888 5666    6888999999999988764 22111  11100 


Q ss_pred             ------------------------------------hhHHH--H------------------------HhhhcccCCCCC
Q 023142          166 ------------------------------------EMEEE--A------------------------KKESMKTLMPVE  183 (286)
Q Consensus       166 ------------------------------------~~~~~--~------------------------~~~~~~~~~~~~  183 (286)
                                                          .+...  .                        ..+....+....
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~  643 (768)
T 3rgz_A          564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM  643 (768)
T ss_dssp             CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred             hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence                                                00000  0                        000000000000


Q ss_pred             CC-CCCh-hhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCcccccccccccc
Q 023142          184 VP-NVSE-EEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVP  259 (286)
Q Consensus       184 ~~-~~~~-~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~~~~~~  259 (286)
                      +. .+|. .+.+.+|+.+++++|+++ .||..|+++++|+.|++++|.++ |.||..+........++.-.+.-.+.++
T Consensus       644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECcCCcccccCC
Confidence            11 1222 256777777777777777 77777777777777777777774 6777777666655555554444434333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=6.4e-20  Score=157.19  Aligned_cols=135  Identities=23%  Similarity=0.334  Sum_probs=88.0

Q ss_pred             CcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142           14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L   90 (286)
                      .|.++++|++|++++|.|+.++ ..+..+++|++|+|++|.++.++  .|..+++|++|+|++|+|+.+++..|..+++|
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            3566666666666666666554 34555666666777666666654  45666667777777776666666666666667


Q ss_pred             cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      ++|++++|.|+.+++ ..|..+++|++|+|++|+++.++..   .+..+++|++|++++|++
T Consensus       134 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          134 KELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCB
T ss_pred             cEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCce
Confidence            777777776666665 4566666677777777766666543   456666677777776665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=5.1e-22  Score=173.21  Aligned_cols=199  Identities=16%  Similarity=0.118  Sum_probs=151.6

Q ss_pred             cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (286)
Q Consensus        22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~   99 (286)
                      +.++++++.++.+|..+  .++|++|++++|.++.++  .|..+++|++|++++|+++.+++..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            68999999999999654  579999999999999886  58999999999999999999988888899999999999997


Q ss_pred             -CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhccc
Q 023142          100 -LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKT  178 (286)
Q Consensus       100 -i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (286)
                       ++.+++ ..|..+++|++|++++|.++.++..   .+..+++|++|++++|.+..++.  ..|....      .+....
T Consensus        92 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~------~L~~L~  159 (285)
T 1ozn_A           92 QLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPD--DTFRDLG------NLTHLF  159 (285)
T ss_dssp             TCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT--TTTTTCT------TCCEEE
T ss_pred             CccccCH-HHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCH--hHhccCC------CccEEE
Confidence             998866 6899999999999999999988553   68899999999999998764321  1121111      111111


Q ss_pred             CCCCCCCCCCh--hhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142          179 LMPVEVPNVSE--EEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPA  236 (286)
Q Consensus       179 ~~~~~~~~~~~--~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~  236 (286)
                      +....+..++.  ...+.+|+.+++++|.++.+ |..++.+++|+.|++++|.+.  .+|.
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~  218 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPT  218 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCH
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC--cCCH
Confidence            11111111111  13567788888888888754 677788888888888888873  3553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=7.4e-20  Score=158.47  Aligned_cols=170  Identities=22%  Similarity=0.294  Sum_probs=143.6

Q ss_pred             cCHHHHhCCC--CcCCCCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142            4 LTADLIWKSP--HFFNAIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (286)
Q Consensus         4 Lt~~~i~~~~--~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~   78 (286)
                      |+.+.|...+  .|.++++|++|++++|.++.++. .+..+++|++|++++|.++.++  .|..+++|++|++++|+++.
T Consensus        44 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            4444455433  58899999999999999999884 4578999999999999999886  57899999999999999999


Q ss_pred             cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA  158 (286)
Q Consensus        79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  158 (286)
                      +++..|..+++|++|++++|.|+.+++ ..|..+++|+.|++++|.++.++..   .+..+++|++|++++|.+..++  
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~--  197 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG---AFDKLTELKTLKLDNNQLKRVP--  197 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCCSCCC--
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChh---HhccCCCcCEEECCCCcCCcCC--
Confidence            999888899999999999999999987 6789999999999999999998874   5789999999999999854221  


Q ss_pred             HHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH
Q 023142          159 ASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII  207 (286)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~  207 (286)
                                            +..+      ..+.+|+.+++++|.+.
T Consensus       198 ----------------------~~~~------~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          198 ----------------------EGAF------DSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ----------------------TTTT------TTCTTCCEEECCSSCBC
T ss_pred             ----------------------HHHh------ccccCCCEEEecCCCee
Confidence                                  1111      13567889999998765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.6e-23  Score=190.48  Aligned_cols=206  Identities=17%  Similarity=0.098  Sum_probs=126.8

Q ss_pred             cCCCCCccEEEeeCCCCcc----cccc-------ccCCCCcCEEeccCCCCCC-----CC-CCCCCCCCCeEeccCCcCc
Q 023142           15 FFNAIKERELDLRGNKIAV----IENL-------GATEDQFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRIT   77 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~----l~~~-------~~~l~~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~Ls~N~l~   77 (286)
                      +..+++|++|+|++|.+..    +|..       +..+++|++|+|++|.++.     ++ .+..+++|++|+|++|.++
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            6677888888888875553    2322       2567888888888888876     33 4667788888888888876


Q ss_pred             ccCCccc----cCC---------CCccEEEeecCcCCC--CCCC-ccCCCCCCccEEEecCCcCCC------CCCchHHH
Q 023142           78 RINPNIG----EFL---------PKLHTLVLTNNRLVN--LVEI-DPLTSLPKLQFLSLLDNSITK------KPNYRLYV  135 (286)
Q Consensus        78 ~l~~~~~----~~l---------~~L~~L~Ls~N~i~~--~~~~-~~l~~l~~L~~L~L~~N~l~~------ip~~~~~~  135 (286)
                      ......+    ..+         ++|++|++++|+|+.  ++.+ ..+..+++|++|++++|.++.      ++.    .
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~  211 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----G  211 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----T
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----H
Confidence            5433222    222         778888888887762  2210 135567778888888877762      221    3


Q ss_pred             HhhCCCCcEEeCCCCChHHHHH--HHHHhhcchhHHHHHhhhcccCCCCCCCC-----CChh---hhccCCccCCCCHHH
Q 023142          136 IHKLKSLRVLDFKKVKNKERME--AASLFASEEMEEEAKKESMKTLMPVEVPN-----VSEE---EEQQTPKVVAPTPEQ  205 (286)
Q Consensus       136 l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~l~ls~n~  205 (286)
                      +..+++|++|++++|.+.....  ....+.....      +....+....+..     ++..   +.+.+|+.+++++|.
T Consensus       212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~------L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN------LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT------CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC------cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            5677777888888777743211  0111221111      1111111111110     0011   125679999999998


Q ss_pred             HHH-----HHHHH-HhcCCHHHHHHHHHHHh
Q 023142          206 IIA-----IKAAI-VNSQTLEEVARLEKVLK  230 (286)
Q Consensus       206 l~~-----ip~~i-~~~~~L~~l~l~~N~l~  230 (286)
                      ++.     +|..+ .++++|+.|++++|.+.
T Consensus       286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            886     99888 77899999999999994

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=1.7e-22  Score=177.97  Aligned_cols=211  Identities=16%  Similarity=0.153  Sum_probs=134.0

Q ss_pred             CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCC---C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142           19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKL---E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i---~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L   93 (286)
                      ++|++|++++|+++.+|. .+..+++|++|++++|.++.+   + .+..+++|++|++++|.++.++.. +..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEE
Confidence            577788888888877774 456777888888888877754   2 445677777788877777777554 3567777777


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK  173 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      ++++|.++.++....+..+++|++|++++|.+..++..   .+..+++|++|++++|.+.+... ...|....      .
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~------~  176 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFL-PDIFTELR------N  176 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEE-CSCCTTCT------T
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccc-hhHHhhCc------C
Confidence            77777777766434577777777777777777754432   46677777777777776543100 00011111      0


Q ss_pred             hhcccCCCCCCCCC-C-hhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142          174 ESMKTLMPVEVPNV-S-EEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPADLKIP  241 (286)
Q Consensus       174 ~~~~~~~~~~~~~~-~-~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~  241 (286)
                      +....+....+..+ + ....+.+|+.+++++|+++.++ ..+..+++|+.|++++|.+. +.+|..+...
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~  246 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF  246 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC-BCSSSSCCCC
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc-ccCHHHHHhh
Confidence            11111111111111 0 1135678888888888888665 36788888899999988884 5666665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=1.5e-22  Score=188.85  Aligned_cols=138  Identities=22%  Similarity=0.269  Sum_probs=99.2

Q ss_pred             CCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           13 PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ..|.++++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|  .|..+++|++|+|++|+++.+++..|..+++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            4566777777777777777765 456667777777777777777765  3667777777777777777776666677777


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      |++|++++|.++.+++ ..|.++++|+.|++++|.++.++..   .+..+++|+.|++++|.+..
T Consensus       130 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          130 LKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCCCCE
T ss_pred             CCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCcCcE
Confidence            7777777777777665 5677777777777777777776653   56777777777777776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=1.1e-19  Score=153.03  Aligned_cols=131  Identities=27%  Similarity=0.357  Sum_probs=121.6

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|++++|.|+.++ ..+..+++|++|+|++|.|+.+ | .|..+++|++|+|++|+|+.+++..|..+++|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            68999999999999887 4788899999999999999987 4 7999999999999999999999999999999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      ++|.|+.+++ ..|..+++|++|+|++|+++.++..   .+..+++|++|++++|++.
T Consensus       112 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCcC
Confidence            9999999987 6899999999999999999998874   6888999999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=8.1e-22  Score=171.16  Aligned_cols=206  Identities=20%  Similarity=0.184  Sum_probs=154.8

Q ss_pred             CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|++|++++|.++.++. .+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            579999999999998874 7888999999999999999885  5899999999999999999998888889999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK  173 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      ++|.++.+++ ..+..+++|++|++++|.++.  +|.    .+..+++|++|++++|.+..+...  .|.....   +..
T Consensus       108 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~---L~~  177 (276)
T 2z62_A          108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQ---MPL  177 (276)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEECGG--GGHHHHT---CTT
T ss_pred             CCCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCCCCCcCCHH--Hhhhhhh---ccc
Confidence            9999999887 579999999999999999987  566    689999999999999987643210  0111100   000


Q ss_pred             hh-cccCCCCCCCCCCh-hhhccCCccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCC
Q 023142          174 ES-MKTLMPVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLP  235 (286)
Q Consensus       174 ~~-~~~~~~~~~~~~~~-~~~~~~l~~l~ls~n~l~~ip~~-i~~~~~L~~l~l~~N~l~~g~iP  235 (286)
                      +. ...+....+..++. .....+|+.+++++|+++.+|.. +.++++|+.|++++|.+. +..|
T Consensus       178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~-c~c~  241 (276)
T 2z62_A          178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-CSCP  241 (276)
T ss_dssp             CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC-CCTT
T ss_pred             cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc-ccCC
Confidence            00 01111111111111 11234688888888888877754 577888888888888884 4544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=1.4e-21  Score=169.72  Aligned_cols=202  Identities=18%  Similarity=0.176  Sum_probs=148.7

Q ss_pred             EEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142           23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (286)
Q Consensus        23 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i  100 (286)
                      .++.++..++.+|..+.  ++|++|++++|.++.++  .|..+++|++|++++|+++.+++..|..+++|++|++++|.|
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            56777888889997653  68999999999999885  689999999999999999999988888999999999999999


Q ss_pred             CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCC
Q 023142          101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM  180 (286)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (286)
                      +.+++ ..|.++++|++|++++|.+..++..   .+..+++|++|++++|.+..+... ..|....      .+....+.
T Consensus        89 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~------~L~~L~Ls  157 (276)
T 2z62_A           89 QSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLP-EYFSNLT------NLEHLDLS  157 (276)
T ss_dssp             CEECT-TTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCC-GGGGGCT------TCCEEECC
T ss_pred             CccCh-hhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCc-hhhccCC------CCCEEECC
Confidence            99886 6899999999999999999988764   578999999999999987542100 0111111      11111111


Q ss_pred             CCCCCCCC--hhhhccCCc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCc
Q 023142          181 PVEVPNVS--EEEEQQTPK----VVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK  239 (286)
Q Consensus       181 ~~~~~~~~--~~~~~~~l~----~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~  239 (286)
                      ...+..++  ....+.++.    .+++++|.++.++.......+|++|++++|.++  .+|..+.
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~  220 (276)
T 2z62_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIF  220 (276)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS--CCCTTTT
T ss_pred             CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee--ecCHhHh
Confidence            11121111  113344444    567777777777666656667888888888883  5666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=1.2e-19  Score=157.38  Aligned_cols=146  Identities=21%  Similarity=0.268  Sum_probs=131.8

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCccc
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRI   79 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l   79 (286)
                      .++.+.+...+.+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+
T Consensus        69 ~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  148 (272)
T 3rfs_A           69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL  148 (272)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence            4556667777789999999999999999998874 5678999999999999999886  389999999999999999999


Q ss_pred             CCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        80 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      ++..+..+++|++|++++|.|+.+++ ..|..+++|++|++++|+++.++..   .+..+++|++|++++|++
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred             CHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHH---HHhCCcCCCEEEccCCCc
Confidence            99888899999999999999999987 6789999999999999999988764   578999999999999975

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=8.8e-20  Score=159.96  Aligned_cols=135  Identities=27%  Similarity=0.293  Sum_probs=69.7

Q ss_pred             CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      .|.++++|+.|++++|.|+.++.. ..+++|++|++++|.|+.+| .+..+++|++|++++|+|+.+++..|..+++|++
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             HhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            355555555555555555555433 33555555555555555554 3445555555555555555555444455555555


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      |++++|+|+.+++ ..|..+++|+.|++++|+++.+|..   .+..+++|++|++++|.+.
T Consensus       129 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          129 LYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAG---LLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             EECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTT---TTTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCHH---HhcCcCCCCEEECCCCcCC
Confidence            5555555555544 3444555555555555555555442   3344555555555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.9e-21  Score=180.50  Aligned_cols=209  Identities=17%  Similarity=0.156  Sum_probs=163.9

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      ....++.+++.++.+|..+  .+++++|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..|.++++|++|+|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3578999999999999765  378999999999999873  799999999999999999999988899999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-hHHHHHHHHHhhcchhHHHHHhhhc
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-NKERMEAASLFASEEMEEEAKKESM  176 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~  176 (286)
                      |.|+.+++ ..|.++++|++|+|++|+++.++..   .+..+++|+.|++++|. +..++.  ..|.+..      .+..
T Consensus       133 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~------~L~~  200 (452)
T 3zyi_A          133 NWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLMRLDLGELKKLEYISE--GAFEGLF------NLKY  200 (452)
T ss_dssp             SCCSBCCT-TTSSSCTTCCEEECCSCCCCEECTT---TTTTCTTCCEEECCCCTTCCEECT--TTTTTCT------TCCE
T ss_pred             CcCCccCh-hhhcccCCCCEEECCCCCcceeCHh---HHhcCCcccEEeCCCCCCccccCh--hhccCCC------CCCE
Confidence            99999987 6799999999999999999998875   68899999999999853 222110  0122221      1122


Q ss_pred             ccCCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCC
Q 023142          177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  243 (286)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~  243 (286)
                      ..+....+..++....+.+|+.+++++|+++.+ |..|..+++|+.|++++|.+. +..|..+.....
T Consensus       201 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~  267 (452)
T 3zyi_A          201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLAS  267 (452)
T ss_dssp             EECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred             EECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCC
Confidence            222222333344455688999999999999965 678999999999999999994 344555544433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.81  E-value=2.4e-20  Score=150.10  Aligned_cols=140  Identities=29%  Similarity=0.378  Sum_probs=125.8

Q ss_pred             CCCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142           16 FNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L   93 (286)
                      ..+++|+.|++++|.++  .+|..+..+++|++|++++|.++.++.+..+++|++|++++|+++...+..+..+++|++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34588999999999999  8998888899999999999999988889999999999999999999667777679999999


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ++++|.|+.++.+..+..+++|++|++++|+++.++.++...+..+++|++|++++|.+.++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999999987445799999999999999999999886555899999999999999986543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=1.1e-21  Score=166.91  Aligned_cols=181  Identities=18%  Similarity=0.180  Sum_probs=153.4

Q ss_pred             CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCC-CCCCC--CCCCCCCCCeEeccC-CcCcccCCccccCCCCccE
Q 023142           18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNE-IVKLE--NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~-l~~i~--~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~   92 (286)
                      .++|+.|++++|+|+.++. .+..+++|++|++++|. ++.++  .|..+++|++|++++ |+++.+++..|..+++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3589999999999999885 78889999999999997 99886  688999999999999 9999999888889999999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCcc---EEEecCC-cCCCCCCchHHHHhhCCCCc-EEeCCCCChHHHHHHHHHhhcchh
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQ---FLSLLDN-SITKKPNYRLYVIHKLKSLR-VLDFKKVKNKERMEAASLFASEEM  167 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~---~L~L~~N-~l~~ip~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~  167 (286)
                      |++++|.++.+|.   |..+++|+   +|++++| .++.++..   .+..+++|+ .|++++|.+..++           
T Consensus       110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~-----------  172 (239)
T 2xwt_C          110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQ-----------  172 (239)
T ss_dssp             EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEEC-----------
T ss_pred             EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccC-----------
Confidence            9999999999875   77777777   9999999 99988875   688999999 9999999754321           


Q ss_pred             HHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHH-HHHHH-HHHHhc-CCHHHHHHHHHHHhcCCCCCC
Q 023142          168 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-IIAIK-AAIVNS-QTLEEVARLEKVLKSGQLPAD  237 (286)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~-l~~ip-~~i~~~-~~L~~l~l~~N~l~~g~iP~~  237 (286)
                                   +..+.       ..+|+.+++++|+ ++.+| ..+..+ ++|++|++++|.++  .+|..
T Consensus       173 -------------~~~~~-------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~~  223 (239)
T 2xwt_C          173 -------------GYAFN-------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPSK  223 (239)
T ss_dssp             -------------TTTTT-------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC--CCCCT
T ss_pred             -------------HhhcC-------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc--cCChh
Confidence                         11111       2468899999995 88876 567888 99999999999994  57765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=1e-19  Score=155.92  Aligned_cols=156  Identities=21%  Similarity=0.260  Sum_probs=129.0

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++++.|++++|.++.++ ..+..+++|++|+|++|.|+.++  .|..+++|++|++++|+++.+++..|..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            67899999999999776 46778999999999999999875  4888999999999999999998888888999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES  175 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  175 (286)
                      ++|.|+.+++ ..|..+++|+.|++++|.++.++..   .+..+++|++|++++|.+..+                    
T Consensus       115 ~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~--------------------  170 (251)
T 3m19_A          115 GGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSV--------------------  170 (251)
T ss_dssp             CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCC--------------------
T ss_pred             CCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCcc--------------------
Confidence            9999999887 6788899999999999999988764   578899999999999975422                    


Q ss_pred             cccCCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142          176 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA  208 (286)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~  208 (286)
                          .+..+      ..+.+|+.+++++|.+.+
T Consensus       171 ----~~~~~------~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          171 ----PHGAF------DRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ----CTTTT------TTCTTCCEEECCSCCBCT
T ss_pred             ----CHHHH------hCCCCCCEEEeeCCceeC
Confidence                11111      135678888998888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=6e-23  Score=181.96  Aligned_cols=210  Identities=16%  Similarity=0.208  Sum_probs=150.7

Q ss_pred             CCCcCCCCCccEEEeeC-CCCc-cccccccCCCCcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142           12 SPHFFNAIKERELDLRG-NKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~-n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      |..+.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+| .|..+++|++|++++|++++..+..+..+
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            66788888999999985 8887 67878888899999999999888 556 58888999999999998886656666788


Q ss_pred             CCccEEEeecCcCC-CCCCCccCCCCC-CccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhc
Q 023142           88 PKLHTLVLTNNRLV-NLVEIDPLTSLP-KLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS  164 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~-~~~~~~~l~~l~-~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  164 (286)
                      ++|++|++++|.|+ .+|.  .+..++ +|++|++++|.++ .+|.    .+..++ |++|++++|.+.....  ..|..
T Consensus       149 ~~L~~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~~~~~~----~~~~l~-L~~L~Ls~N~l~~~~~--~~~~~  219 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPP----TFANLN-LAFVDLSRNMLEGDAS--VLFGS  219 (313)
T ss_dssp             TTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECCG----GGGGCC-CSEEECCSSEEEECCG--GGCCT
T ss_pred             CCCCeEECcCCcccCcCCH--HHhhhhhcCcEEECcCCeeeccCCh----HHhCCc-ccEEECcCCcccCcCC--HHHhc
Confidence            89999999999888 4443  677777 8889999988887 5555    567776 8888888887643210  01111


Q ss_pred             chhHHHHHhhhcccCCCCCCC-CCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023142          165 EEMEEEAKKESMKTLMPVEVP-NVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPAD  237 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~  237 (286)
                      ...      +....+....+. ..+....+.+|+.+++++|+++ .+|..+..+++|++|++++|.+. |.+|..
T Consensus       220 l~~------L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~  287 (313)
T 1ogq_A          220 DKN------TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQG  287 (313)
T ss_dssp             TSC------CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCCS
T ss_pred             CCC------CCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc-ccCCCC
Confidence            110      000000000000 0111234678899999999998 88888999999999999999995 678864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=2.2e-21  Score=179.52  Aligned_cols=187  Identities=21%  Similarity=0.258  Sum_probs=119.5

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++++.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++  .|.++++|++|+|++|+|+.+++..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45666666666666554 45555666666666666666553  4566666666666666666666555556666666666


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecC-CcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE  174 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      ++|.|+.+++ ..|..+++|+.|++++ |.+..++..   .+..+++|++|++++|.+..                    
T Consensus       144 ~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~--------------------  199 (440)
T 3zyj_A          144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLRE--------------------  199 (440)
T ss_dssp             CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSS--------------------
T ss_pred             CCCcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCcc--------------------
Confidence            6666666554 4566666666666665 344444443   45566666666666665432                    


Q ss_pred             hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCC
Q 023142          175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPD  242 (286)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~  242 (286)
                                  ++....+.+|+.+++++|+++.+ |..|..+++|+.|++++|.+. +..|..+....
T Consensus       200 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  255 (440)
T 3zyj_A          200 ------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQ  255 (440)
T ss_dssp             ------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCT
T ss_pred             ------------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCC
Confidence                        12223477899999999999966 578899999999999999994 33344444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=1.5e-21  Score=173.79  Aligned_cols=127  Identities=20%  Similarity=0.283  Sum_probs=64.0

Q ss_pred             CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|++++|.|+.++. .+..+++|++|++++|.++.+ | .|..+++|++|++++|+++.+|...+   ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence            455556666666555542 445555566666666655554 3 45555556666665555555544332   34555555


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      ++|.++.+++ ..|.++++|+.|++++|.+..  +...   .+..+++|++|++++|.+
T Consensus       129 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          129 HENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSCC
T ss_pred             CCCcccccCH-hHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCcc
Confidence            5555554443 334445555555555554432  1111   344444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=1.4e-22  Score=179.49  Aligned_cols=226  Identities=16%  Similarity=0.191  Sum_probs=171.2

Q ss_pred             CCccEEEeeCCCCc---cccccccCCCCcCEEeccC-CCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           19 IKERELDLRGNKIA---VIENLGATEDQFDTIDLSD-NEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~-N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      .+++.|++++|.++   .+|..+..+++|++|++++ |.+. .+| .|..+++|++|++++|++++..+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999998   5888999999999999995 8888 556 7899999999999999999766666789999999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCC-CCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLK-SLRVLDFKKVKNKERMEAASLFASEEMEEE  170 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  170 (286)
                      |++++|.|++..+ ..+..+++|++|++++|+++ .+|.    .+..++ +|++|++++|.+.....  ..|....    
T Consensus       130 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~~L~~L~L~~N~l~~~~~--~~~~~l~----  198 (313)
T 1ogq_A          130 LDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIP--PTFANLN----  198 (313)
T ss_dssp             EECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSSEEEEECC--GGGGGCC----
T ss_pred             EeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----HHhhhhhcCcEEECcCCeeeccCC--hHHhCCc----
Confidence            9999999996544 48999999999999999998 7777    688888 99999999998652110  0111111    


Q ss_pred             HHhhhcccCCCCCCC-CCCh-hhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCc
Q 023142          171 AKKESMKTLMPVEVP-NVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK  248 (286)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~  248 (286)
                      +..+   .+....+. ..+. ...+.+|+.+++++|+++..++.+..+++|++|++++|.+. |.+|..+........++
T Consensus       199 L~~L---~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          199 LAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             CSEE---ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEE
T ss_pred             ccEE---ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEE
Confidence            1111   11110000 0111 14678899999999999855555888999999999999995 78998888776666665


Q ss_pred             ccccccccccc
Q 023142          249 DVKENDEKMVP  259 (286)
Q Consensus       249 ~~~~~~~~~~~  259 (286)
                      ...+.-.+..+
T Consensus       275 Ls~N~l~~~ip  285 (313)
T 1ogq_A          275 VSFNNLCGEIP  285 (313)
T ss_dssp             CCSSEEEEECC
T ss_pred             CcCCcccccCC
Confidence            54444433333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=7.2e-21  Score=169.54  Aligned_cols=127  Identities=22%  Similarity=0.317  Sum_probs=76.0

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|++++|.++.++ ..+..+++|++|++++|.++.+ | .|..+++|++|++++|+++.+|...+   ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence            46666677766666654 3556666666777766666655 2 46666666666666666666655443   56666666


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      ++|.|+.+++ ..|.++++|+.|++++|.++.  +...   .+..+ +|++|++++|.+.
T Consensus       131 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          131 HDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTT---SSCSC-CCSCCBCCSSBCS
T ss_pred             CCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcc---cccCC-ccCEEECcCCCCC
Confidence            6666666655 456666666666666666642  2111   23333 5555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=2.1e-19  Score=157.60  Aligned_cols=176  Identities=20%  Similarity=0.183  Sum_probs=134.2

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      ++++.|++++|.|+.++ ..+..+++|++|+|++|.|+.++....+++|++|++++|+|+.+|.. +..+++|++|++++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCC
Confidence            68999999999999775 67788999999999999999887678899999999999999988764 46889999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK  177 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (286)
                      |+|+.+++ ..|.++++|++|++++|+++.++..   .+..+++|+.|++++|.++.++.  ..|.....      +...
T Consensus       110 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~------L~~L  177 (290)
T 1p9a_G          110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPA--GLLNGLEN------LDTL  177 (290)
T ss_dssp             SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCCSCCCT--TTTTTCTT------CCEE
T ss_pred             CcCcccCH-HHHcCCCCCCEEECCCCCCCccChh---hcccccCCCEEECCCCcCCccCH--HHhcCcCC------CCEE
Confidence            99999886 6799999999999999999988775   57889999999999998875432  12222221      1111


Q ss_pred             cCCCCCCCCCChh-hhccCCccCCCCHHHHH
Q 023142          178 TLMPVEVPNVSEE-EEQQTPKVVAPTPEQII  207 (286)
Q Consensus       178 ~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~  207 (286)
                      .+....+..+|.. .....|+.+.+++|.+.
T Consensus       178 ~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            1111122222222 34567888889888765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=3.4e-19  Score=150.88  Aligned_cols=131  Identities=21%  Similarity=0.240  Sum_probs=119.9

Q ss_pred             CCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           18 AIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .++|+.|++++|.|+.+ |..+..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|..+++|++|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            47899999999999987 477888999999999999999886  478999999999999999999998888999999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      +++|+|+.+|.  .+..+++|++|+|++|+++.++..   .+..+++|+.|++++|++.
T Consensus       119 Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          119 MCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCBC
T ss_pred             ccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCcc
Confidence            99999999986  788999999999999999998864   6889999999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=8.6e-22  Score=179.23  Aligned_cols=132  Identities=19%  Similarity=0.289  Sum_probs=75.9

Q ss_pred             CCCccEEEeeCCCCcccccc-ccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           18 AIKERELDLRGNKIAVIENL-GATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      +.+++.|++++|.++.+|.. +..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            35556666666666655532 344566666666666665553  455566666666666666666555555566666666


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      +++|.|+.++. ..|.++++|++|++++|.++.++..   .+..+++|++|++++|.+.
T Consensus       124 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          124 LERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChh---hccCCCCCCEEECCCCcCC
Confidence            66666665554 3455566666666666666555432   3555566666666665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=9.9e-22  Score=188.65  Aligned_cols=47  Identities=17%  Similarity=-0.031  Sum_probs=30.2

Q ss_pred             hhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142          190 EEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADL  238 (286)
Q Consensus       190 ~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~  238 (286)
                      ...+.+|+.+++++|.++.+ |..++.+++|+.|++++|.+.  .+|..+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~  297 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYG  297 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSS
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCccc
Confidence            35566777777777777633 566677777777777777763  355444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=1.7e-21  Score=192.13  Aligned_cols=215  Identities=19%  Similarity=0.171  Sum_probs=147.6

Q ss_pred             CCCcCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCCC-CC-CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~   88 (286)
                      |..+.++++|+.|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+..+..++
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            556777888888888888887 667777778888888888888873 45 577788888888888888765565666778


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHH---------------------------------
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLY---------------------------------  134 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~---------------------------------  134 (286)
                      +|++|++++|++++..+ ..+..+++|+.|++++|+++ .+|...+.                                 
T Consensus       515 ~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            88888888888775443 46777788888888887776 44432100                                 


Q ss_pred             ---------------------------------HHhhCCCCcEEeCCCCChHHH-HHHHHHhhcchhHHHHHhhhcccCC
Q 023142          135 ---------------------------------VIHKLKSLRVLDFKKVKNKER-MEAASLFASEEMEEEAKKESMKTLM  180 (286)
Q Consensus       135 ---------------------------------~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (286)
                                                       .+..+++|++|++++|.+... +.   .|..+.      .+....+.
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~------~L~~L~Ls  664 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGSMP------YLFILNLG  664 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG---GGGGCT------TCCEEECC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH---HHhccc------cCCEEeCc
Confidence                                             122345677778877775421 11   011111      11111111


Q ss_pred             CCCCC-CCC-hhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023142          181 PVEVP-NVS-EEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPAD  237 (286)
Q Consensus       181 ~~~~~-~~~-~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~  237 (286)
                      ...+. .+| ..+.+.+|+.+++++|+++ .+|..++++++|++|++++|.++ |.||..
T Consensus       665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~~  723 (768)
T 3rgz_A          665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS-GPIPEM  723 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE-EECCSS
T ss_pred             CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc-ccCCCc
Confidence            11111 122 2367899999999999999 99999999999999999999995 899965

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=5.6e-21  Score=170.86  Aligned_cols=205  Identities=17%  Similarity=0.220  Sum_probs=139.5

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCcc
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI   83 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~   83 (286)
                      ++.+.+...+.+..+++|++|++++|+++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.+++  
T Consensus        51 l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--  127 (347)
T 4fmz_A           51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--  127 (347)
T ss_dssp             CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--
T ss_pred             EeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--
Confidence            445556666678888889999999998888877 67788999999999988888888888999999999998888865  


Q ss_pred             ccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhh
Q 023142           84 GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFA  163 (286)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  163 (286)
                      +..+++|++|++++|......+  .+..+++|++|++++|.+..++.     +..+++|+.|++++|.+..++.    +.
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~----~~  196 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDISP----LA  196 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCCCGG----GG
T ss_pred             hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCccccccc----cc
Confidence            5688888888888885444333  47788888888888888877664     6788888888888887654432    11


Q ss_pred             cchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023142          164 SEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l  229 (286)
                      ...      .+....+....+..++....+.+|+.+++++|+++.++. +..+++|++|++++|.+
T Consensus       197 ~l~------~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          197 SLT------SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             GCT------TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCC------ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence            111      111111111112222223345556666666666655544 55556666666655555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=7.4e-22  Score=177.41  Aligned_cols=147  Identities=19%  Similarity=0.168  Sum_probs=127.9

Q ss_pred             cCHHHHhC--CCCcCCCCCccEEEeeCCCCcccccc-ccCCCCcCEEeccCCCCCCCCC---CCCCCCCCeEeccCC-cC
Q 023142            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIENL-GATEDQFDTIDLSDNEIVKLEN---MPHLNRLGTLIINNN-RI   76 (286)
Q Consensus         4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~---~~~l~~L~~L~Ls~N-~l   76 (286)
                      ++.+.++.  +..|.++++|++|++++|+++.++.. +..+++|++|++++|.++.+|.   |..+++|++|++++| .+
T Consensus        83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence            44444554  34588999999999999999999854 7889999999999999998864   889999999999999 68


Q ss_pred             cccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           77 TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        77 ~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      +.+++..+..+++|++|++++|.++.+.+ ..+..+++|++|++++|.+..++..   .+..+++|+.|++++|.+..
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEI---FVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHHH---HHHHTTTEEEEEEESCBCTT
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchhh---hhhhcccccEEECCCCcccc
Confidence            89988888899999999999999998865 6899999999999999999887763   56679999999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=4.1e-19  Score=149.47  Aligned_cols=145  Identities=25%  Similarity=0.351  Sum_probs=125.0

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCcccc--ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCccc
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRI   79 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l   79 (286)
                      ++.+.++..+. .-...++.|++++|+|+.++  ..+..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+
T Consensus        18 ~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~   96 (220)
T 2v70_A           18 CSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV   96 (220)
T ss_dssp             CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             eCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence            34444444332 11346789999999999884  45788999999999999999885  699999999999999999999


Q ss_pred             CCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        80 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      ++..|..+++|++|+|++|.|+.+++ ..|.++++|++|+|++|+++.++..   .+..+++|+.|++++|++.
T Consensus        97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           97 QHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCCEE
T ss_pred             CHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcCCc
Confidence            99988999999999999999999976 6899999999999999999988443   6889999999999999974

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=6e-21  Score=183.22  Aligned_cols=206  Identities=17%  Similarity=0.144  Sum_probs=115.4

Q ss_pred             CCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           16 FNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      .++++|++|++++|.|+.++ ..+..+++|++|+|++|.++.++  .|+.+++|++|+|++|.|+.+|+..|..+++|++
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            34455555555555555444 24455555555555555555543  3455555555555555555555555455555555


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCch----------------------------------------
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR----------------------------------------  132 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~----------------------------------------  132 (286)
                      |++++|.|+.+++ ..|+++++|++|++++|.++.++...                                        
T Consensus       152 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~  230 (597)
T 3oja_B          152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  230 (597)
T ss_dssp             EECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred             EEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence            5555555555544 34555555555555555444322100                                        


Q ss_pred             ----------------HHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccC
Q 023142          133 ----------------LYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQT  195 (286)
Q Consensus       133 ----------------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  195 (286)
                                      ...+..+++|+.|++++|.+.....  ..|....      .+....+....+..++.. ..+++
T Consensus       231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~------~L~~L~Ls~N~l~~l~~~~~~l~~  302 (597)
T 3oja_B          231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQ------RLERLYISNNRLVALNLYGQPIPT  302 (597)
T ss_dssp             CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES--GGGTTCS------SCCEEECTTSCCCEEECSSSCCTT
T ss_pred             CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH--HHhcCcc------CCCEEECCCCCCCCCCcccccCCC
Confidence                            0136778889999999998654310  0122211      111111111111111111 34678


Q ss_pred             CccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          196 PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       196 l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                      |+.+++++|.++.+|..++.+++|+.|++++|.+.
T Consensus       303 L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             CCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence            99999999999999988999999999999999884

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=2.2e-21  Score=180.94  Aligned_cols=221  Identities=19%  Similarity=0.197  Sum_probs=155.2

Q ss_pred             cCHHHHhC--CCCcCCCCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (286)
Q Consensus         4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~   78 (286)
                      |+.+.|..  +..|.++++|++|++++|.++.+|. .+..+++|++|+|++|.+..++  .|..+++|+.|++++|.++.
T Consensus        63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  142 (477)
T 2id5_A           63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY  142 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred             CCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce
Confidence            34444443  5678899999999999999999884 5778999999999999999773  68899999999999999999


Q ss_pred             cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-------
Q 023142           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-------  151 (286)
Q Consensus        79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-------  151 (286)
                      +++..|..+++|+.|++++|.++.++. ..|.++++|+.|++++|.+..++..   .+..+++|+.|++++|.       
T Consensus       143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          143 ISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             ECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECT
T ss_pred             eChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCc
Confidence            988888899999999999999998886 5688889999999999988876654   45666666666666653       


Q ss_pred             -----------------hHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCCh--hhhccCCccCCCCHHHHHHH-HH
Q 023142          152 -----------------NKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSE--EEEQQTPKVVAPTPEQIIAI-KA  211 (286)
Q Consensus       152 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~ls~n~l~~i-p~  211 (286)
                                       +..++.  ..|....      .+....+....+..++.  ...+.+|+.+++++|+++.+ |.
T Consensus       219 ~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          219 NCLYGLNLTSLSITHCNLTAVPY--LAVRHLV------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             TTTTTCCCSEEEEESSCCCSCCH--HHHTTCT------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             ccccCccccEEECcCCcccccCH--HHhcCcc------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence                             322210  0111111      01111111111111111  13466777777777777744 46


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142          212 AIVNSQTLEEVARLEKVLKSGQLPADL  238 (286)
Q Consensus       212 ~i~~~~~L~~l~l~~N~l~~g~iP~~~  238 (286)
                      ++..+++|++|++++|.++  .+|...
T Consensus       291 ~~~~l~~L~~L~L~~N~l~--~~~~~~  315 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGNQLT--TLEESV  315 (477)
T ss_dssp             TBTTCTTCCEEECCSSCCS--CCCGGG
T ss_pred             HhcCcccCCEEECCCCcCc--eeCHhH
Confidence            6777888888888888773  455543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=4.7e-21  Score=183.62  Aligned_cols=137  Identities=20%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             CCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           13 PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ..|.++++|++|++++|+++.+ |..+..+++|++|++++|.++.+ | .|+.+++|++|++++|+++.+++..+..+++
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            3566666666666666666654 35566666666666666666654 2 4666666666666666666665555566666


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCc--EEeCCCCChH
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR--VLDFKKVKNK  153 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~--~L~l~~n~~~  153 (286)
                      |++|++++|.++.++. ..+..+++|++|++++|.++.++..   .++.+++|+  .|++++|.+.
T Consensus       131 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          131 LESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             CCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEECTTCCCC
T ss_pred             ccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEecCCCccC
Confidence            6666666666666532 2344466666666666666655432   466666666  6666666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.3e-21  Score=172.94  Aligned_cols=177  Identities=19%  Similarity=0.229  Sum_probs=153.0

Q ss_pred             CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      ..+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++  .+..+++|++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~  111 (308)
T 1h6u_A           35 VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKT  111 (308)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred             ecHHHcCCcCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence            344557899999999999999884 6679999999999999999877999999999999999999985  3578999999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK  172 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  172 (286)
                      |++++|.|+.++.   +..+++|+.|++++|.++.++.     +..+++|++|++++|.+..++                
T Consensus       112 L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~----------------  167 (308)
T 1h6u_A          112 LDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLT----------------  167 (308)
T ss_dssp             EECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCG----------------
T ss_pred             EECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCCh----------------
Confidence            9999999999764   8899999999999999998875     789999999999999864321                


Q ss_pred             hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142          173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP  235 (286)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP  235 (286)
                                      ....+.+|+.+++++|+++.++. +..+++|++|++++|.+.  .+|
T Consensus       168 ----------------~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~--~~~  211 (308)
T 1h6u_A          168 ----------------PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS--DVS  211 (308)
T ss_dssp             ----------------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC--BCG
T ss_pred             ----------------hhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC--ccc
Confidence                            01136689999999999998776 899999999999999994  455

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=5.8e-20  Score=162.86  Aligned_cols=210  Identities=17%  Similarity=0.107  Sum_probs=131.0

Q ss_pred             CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC------------------CCCCCCCCeEeccCCc
Q 023142           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPHLNRLGTLIINNNR   75 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~l~~L~~L~Ls~N~   75 (286)
                      .|.++++|+.|++++|.++.+++ +..+++|++|++++|.++.++.                  ...+++|++|++++|+
T Consensus        53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~  131 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK  131 (317)
T ss_dssp             HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred             HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence            35556666666666666664443 4445556666665555543320                  1224566777777777


Q ss_pred             CcccCCccccCCCCccEEEeecCcCCCCCCCccC-CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        76 l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      ++.+++..+..+++|++|++++|.|+.+++ ..+ ..+++|++|++++|.++.++..     ..+++|++|++++|.+..
T Consensus       132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCCE
T ss_pred             CCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCCcCCc
Confidence            777766666677888888888888877654 344 4677788888888888777552     347778888888887654


Q ss_pred             HHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccCCccCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhc
Q 023142          155 RMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEKVLKS  231 (286)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~--~ip~~i~~~~~L~~l~l~~N~l~~  231 (286)
                      ++..   |....      .+....+....+..+|.. ..+.+|+.+++++|.+.  .+|..++.+++|+.+++..+.--.
T Consensus       206 l~~~---~~~l~------~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          206 MGPE---FQSAA------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             ECGG---GGGGT------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             chhh---hcccC------cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            4221   22111      111111111111111111 35678999999999998  888999999999999999554334


Q ss_pred             CCCCCCCc
Q 023142          232 GQLPADLK  239 (286)
Q Consensus       232 g~iP~~~~  239 (286)
                      |..|....
T Consensus       277 ~~~~~~~~  284 (317)
T 3o53_A          277 GQNEEECT  284 (317)
T ss_dssp             SSSSCCCS
T ss_pred             CCchhccC
Confidence            66665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=8.3e-21  Score=168.92  Aligned_cols=218  Identities=18%  Similarity=0.198  Sum_probs=159.6

Q ss_pred             cCHHHHhCC--CCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCccc
Q 023142            4 LTADLIWKS--PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRI   79 (286)
Q Consensus         4 Lt~~~i~~~--~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l   79 (286)
                      |+.+.|+..  ..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+| .+.  ++|++|++++|+++.+
T Consensus        59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~  136 (330)
T 1xku_A           59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKV  136 (330)
T ss_dssp             CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBB
T ss_pred             CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccccc
Confidence            444555543  3588999999999999999987 678888999999999999999887 333  7899999999999998


Q ss_pred             CCccccCCCCccEEEeecCcCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142           80 NPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME  157 (286)
Q Consensus        80 ~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~  157 (286)
                      ++..+..+++|++|++++|.++.  +.+ ..+.++++|++|++++|.++.+|..      ..++|++|++++|.+.....
T Consensus       137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~l~~~~~  209 (330)
T 1xku_A          137 RKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDGNKITKVDA  209 (330)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTTSCCCEECT
T ss_pred             CHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCcc------ccccCCEEECCCCcCCccCH
Confidence            88878889999999999998864  333 4678888899999999888888763      23788888888887653310


Q ss_pred             HHHHhhcchhHHHHHhhhcccCCCCCCCCCC--hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142          158 AASLFASEEMEEEAKKESMKTLMPVEVPNVS--EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP  235 (286)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP  235 (286)
                        ..|....      .+....+....+..++  ....+.+|+.+++++|+++.+|..+..+++|++|++++|.++  .+|
T Consensus       210 --~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~--~~~  279 (330)
T 1xku_A          210 --ASLKGLN------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS--AIG  279 (330)
T ss_dssp             --GGGTTCT------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC--CCC
T ss_pred             --HHhcCCC------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC--ccC
Confidence              1122211      1111111111111111  124577899999999999999988999999999999999994  576


Q ss_pred             CCCcc
Q 023142          236 ADLKI  240 (286)
Q Consensus       236 ~~~~~  240 (286)
                      ...+.
T Consensus       280 ~~~f~  284 (330)
T 1xku_A          280 SNDFC  284 (330)
T ss_dssp             TTSSS
T ss_pred             hhhcC
Confidence            65543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=1.3e-20  Score=168.47  Aligned_cols=180  Identities=17%  Similarity=0.195  Sum_probs=149.7

Q ss_pred             HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142            8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus         8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      .+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++.+..+++|+.|++++|.++.+++  +..+
T Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~  220 (347)
T 4fmz_A          144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM  220 (347)
T ss_dssp             TCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             CcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC
Confidence            34556668899999999999999998876 66799999999999999988778899999999999999998865  5688


Q ss_pred             CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchh
Q 023142           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEM  167 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  167 (286)
                      ++|++|++++|.++.+++   +..+++|++|++++|.++.++     .+..+++|++|++++|.+.+++           
T Consensus       221 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~-----------  281 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN-----AVKDLTKLKMLNVGSNQISDIS-----------  281 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCCCG-----------
T ss_pred             CcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh-----hHhcCCCcCEEEccCCccCCCh-----------
Confidence            999999999999998865   888999999999999999875     4788999999999999765321           


Q ss_pred             HHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHh
Q 023142          168 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                           ....+.+|+.+++++|+++ ..|..++.+++|++|++++|.+.
T Consensus       282 ---------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          282 ---------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             ---------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             ---------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence                                 0113557888888888887 45577888888888888888884

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=2.2e-20  Score=169.85  Aligned_cols=91  Identities=11%  Similarity=0.057  Sum_probs=57.9

Q ss_pred             HHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccCCccCCCCHHHHHHHHHHH
Q 023142          135 VIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAI  213 (286)
Q Consensus       135 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~~ip~~i  213 (286)
                      .+..+++|+.|++++|.+.....  ..|....      .+....+....+..++.. ..+++|+.+++++|+++.+|..+
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~------~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  314 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMY--HPFVKMQ------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ  314 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEES--GGGTTCS------SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH
T ss_pred             HHcCCCCccEEECCCCcCCCcCh--hHccccc------cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc
Confidence            36778889999999988654310  1122211      111111111111111111 34678999999999999999889


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCC
Q 023142          214 VNSQTLEEVARLEKVLKSGQLP  235 (286)
Q Consensus       214 ~~~~~L~~l~l~~N~l~~g~iP  235 (286)
                      +.+++|++|++++|.+.  .+|
T Consensus       315 ~~l~~L~~L~L~~N~i~--~~~  334 (390)
T 3o6n_A          315 PQFDRLENLYLDHNSIV--TLK  334 (390)
T ss_dssp             HHHTTCSEEECCSSCCC--CCC
T ss_pred             cccCcCCEEECCCCccc--eeC
Confidence            99999999999999994  455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=3.9e-21  Score=185.88  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=136.0

Q ss_pred             cCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCCCCC-CCCCCCC-CCeEeccCCcCcccCCccccCC--CC
Q 023142           15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNR-LGTLIINNNRITRINPNIGEFL--PK   89 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~-L~~L~Ls~N~l~~l~~~~~~~l--~~   89 (286)
                      +.++++|+.|++++|+++ .+| .+..+++|++|++++|.++.+| .+..+++ |++|++++|+++.+|..+ ..+  ++
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~  403 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSV  403 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSC
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCc
Confidence            666667777777777776 666 5556667777777777766665 5666777 777777777777665433 333  36


Q ss_pred             ccEEEeecCcCCCCCCCccCC-------CCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142           90 LHTLVLTNNRLVNLVEIDPLT-------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF  162 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~-------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  162 (286)
                      |++|++++|.|++..+ ..+.       .+++|++|++++|.++.+|..   .+..+++|++|++++|.+..++.  ..|
T Consensus       404 L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~~l~~L~~L~Ls~N~l~~i~~--~~~  477 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKE---LFSTGSPLSSINLMGNMLTEIPK--NSL  477 (636)
T ss_dssp             EEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH---HHHTTCCCSEEECCSSCCSBCCS--SSS
T ss_pred             cCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHH---HHccCCCCCEEECCCCCCCCcCH--HHh
Confidence            7777777777776544 3455       666788888888888877763   45567888888888887663321  111


Q ss_pred             hcchh-HHHHHhhhcccCCCCCCCCCChh-h--hccCCccCCCCHHHHHHHHHHHHhcCCHHHHHH------HHHHHhcC
Q 023142          163 ASEEM-EEEAKKESMKTLMPVEVPNVSEE-E--EQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR------LEKVLKSG  232 (286)
Q Consensus       163 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l------~~N~l~~g  232 (286)
                      ..... ......+....+....+..+|.. .  .+.+|+.+++++|+++.+|..++++++|++|++      ++|.+ .|
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l-~~  556 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT-LR  556 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC-CC
T ss_pred             ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc-cc
Confidence            11100 00000111111111222223322 2  566777777777777777777777777777777      34555 36


Q ss_pred             CCCCCCccCCCCCCCcc
Q 023142          233 QLPADLKIPDYDSGSKD  249 (286)
Q Consensus       233 ~iP~~~~~~~~~~~~~~  249 (286)
                      .+|..+........++.
T Consensus       557 ~~p~~l~~l~~L~~L~L  573 (636)
T 4eco_A          557 EWPEGITLCPSLTQLQI  573 (636)
T ss_dssp             CCCTTGGGCSSCCEEEC
T ss_pred             cChHHHhcCCCCCEEEC
Confidence            67777666554444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=8.8e-22  Score=172.78  Aligned_cols=177  Identities=17%  Similarity=0.232  Sum_probs=150.5

Q ss_pred             hCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           10 WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        10 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      .+...+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++.  +..+++
T Consensus        37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~  113 (291)
T 1h6t_A           37 TDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKK  113 (291)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTT
T ss_pred             ccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCC
Confidence            344445567889999999999998876 56699999999999999988779999999999999999999854  578999


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHH
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEE  169 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  169 (286)
                      |++|++++|.|+.++   .+..+++|+.|++++|.++.++     .+..+++|++|++++|.+..+..            
T Consensus       114 L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~~------------  173 (291)
T 1h6t_A          114 LKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP------------  173 (291)
T ss_dssp             CCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG------------
T ss_pred             CCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCccccchh------------
Confidence            999999999999874   4888999999999999999884     58899999999999998653210            


Q ss_pred             HHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          170 EAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                          ...+.+|+.+++++|.++.+|. +..+++|+.|++++|.+.
T Consensus       174 --------------------l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          174 --------------------LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             --------------------GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             --------------------hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence                                1136689999999999998864 899999999999999985

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.78  E-value=2.1e-19  Score=141.62  Aligned_cols=133  Identities=26%  Similarity=0.401  Sum_probs=118.7

Q ss_pred             CCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           17 NAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .+++|+.|++++|.++  .+|..+..+++|++|++++|.++.++.+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            3478999999999999  89988888999999999999999888899999999999999999995566666799999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCC
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~  149 (286)
                      +++|.|++++.+..+..+++|++|++++|+++.++.++...+..+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999975224789999999999999999999885555799999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=1.8e-20  Score=174.54  Aligned_cols=142  Identities=21%  Similarity=0.273  Sum_probs=107.6

Q ss_pred             CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142            5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus         5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      ....+...+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.+++  +
T Consensus        54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~  130 (466)
T 1o6v_A           54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--L  130 (466)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--H
Confidence            33445556667788899999999999888877 77788899999999988887668888899999999998888865  5


Q ss_pred             cCCCCccEEEeecCcCCCCCCC------------------ccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEe
Q 023142           85 EFLPKLHTLVLTNNRLVNLVEI------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD  146 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~~------------------~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~  146 (286)
                      ..+++|++|++++|.++.++.+                  ..+.++++|+.|++++|.+..++.     +..+++|++|+
T Consensus       131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~  205 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-----LAKLTNLESLI  205 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEE
T ss_pred             cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-----hccCCCCCEEE
Confidence            6888888888888888776431                  124566677777777777776643     56777777777


Q ss_pred             CCCCChHH
Q 023142          147 FKKVKNKE  154 (286)
Q Consensus       147 l~~n~~~~  154 (286)
                      +++|.+..
T Consensus       206 l~~n~l~~  213 (466)
T 1o6v_A          206 ATNNQISD  213 (466)
T ss_dssp             CCSSCCCC
T ss_pred             ecCCcccc
Confidence            77776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.8e-21  Score=182.62  Aligned_cols=211  Identities=19%  Similarity=0.150  Sum_probs=126.9

Q ss_pred             CCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           17 NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      .+++|+.|+|++|.|+.++ ..+..+++|++|+|++|.++.++.|..+++|++|+|++|.|+++++.     ++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence            3457888888888888665 56777888888888888887665577788888888888887776532     45555666


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES  175 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  175 (286)
                      ++|.|+.++. .   .+++|+.|++++|.++.++..   .++.+++|++|++++|.+...... .++..+      ..+.
T Consensus       107 ~~N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l------~~L~  172 (487)
T 3oja_A          107 ANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFA-ELAASS------DTLE  172 (487)
T ss_dssp             CSSCCCCEEE-C---CCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCEEEGG-GGGGGT------TTCC
T ss_pred             cCCcCCCCCc-c---ccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCCcChH-HHhhhC------Cccc
Confidence            6665555443 1   234555555555555544322   345555555555555554321100 000000      0111


Q ss_pred             cccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCc
Q 023142          176 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK  248 (286)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~  248 (286)
                      ...+....+..++....+.+|+.+++++|.|+.+|+.++.+++|+.|++++|.+.  .||..+........++
T Consensus       173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFD  243 (487)
T ss_dssp             EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEE
T ss_pred             EEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEE
Confidence            1111111111111222366888999999999988888888999999999999984  4887765544433333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=1.3e-21  Score=173.09  Aligned_cols=183  Identities=15%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             CCCcCEEeccCCCCC-CCC-CC--CCCCCCCeEeccCCcCcccCCccccCC-----CCccEEEeecCcCCCCCCCccCCC
Q 023142           41 EDQFDTIDLSDNEIV-KLE-NM--PHLNRLGTLIINNNRITRINPNIGEFL-----PKLHTLVLTNNRLVNLVEIDPLTS  111 (286)
Q Consensus        41 l~~L~~L~Ls~N~l~-~i~-~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~i~~~~~~~~l~~  111 (286)
                      +++|++|++++|.++ .+| .+  ..+++|++|++++|+++++| ..+..+     ++|++|++++|+|+.+++ ..|++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhcc
Confidence            455555555555554 233 22  44555555555555555542 222233     455555555555555543 34555


Q ss_pred             CCCccEEEecCCcCCCC---CCchHHHH--hhCCCCcEEeCCCCChHHHHHHH-HHhhcchhHHHHHhhhcccCCCCCCC
Q 023142          112 LPKLQFLSLLDNSITKK---PNYRLYVI--HKLKSLRVLDFKKVKNKERMEAA-SLFASEEMEEEAKKESMKTLMPVEVP  185 (286)
Q Consensus       112 l~~L~~L~L~~N~l~~i---p~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (286)
                      +++|++|++++|++...   +.    .+  ..+++|++|++++|.+...+... ..|........+. +..+.+..... 
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~-  245 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD-LSHNSLRDAAG-  245 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE-CTTSCCCSSCC-
T ss_pred             CCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE-CCCCcCCcccc-
Confidence            55555555555554321   11    11  44455555555555544221111 1111111000000 00000000000 


Q ss_pred             CCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142          186 NVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA  236 (286)
Q Consensus       186 ~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~  236 (286)
                       .+....+.+|+.+++++|+|+.+|..+.  ++|++|++++|.++  .+|.
T Consensus       246 -~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~--~~p~  291 (312)
T 1wwl_A          246 -APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD--RNPS  291 (312)
T ss_dssp             -CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC--SCCC
T ss_pred             -hhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC--CChh
Confidence             0001235678888888888887776665  77888888888884  3454

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.78  E-value=5.6e-21  Score=184.81  Aligned_cols=212  Identities=13%  Similarity=0.111  Sum_probs=117.5

Q ss_pred             CcCCCCCccEEEeeCCCCccccccccCCCC-cCEEeccCCCCCCCC-CCCCC--CCCCeEeccCCcCcccCCcccc----
Q 023142           14 HFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHL--NRLGTLIINNNRITRINPNIGE----   85 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l--~~L~~L~Ls~N~l~~l~~~~~~----   85 (286)
                      .+.++++|+.|++++|+++.+|..+..+++ |++|++++|.++.+| .+..+  ++|++|++++|++++..+..+.    
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            555566666666666666666655555666 666666666666555 23332  2566666666665554443333    


Q ss_pred             ---CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhC-------CCCcEEeCCCCChHHH
Q 023142           86 ---FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL-------KSLRVLDFKKVKNKER  155 (286)
Q Consensus        86 ---~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l-------~~L~~L~l~~n~~~~~  155 (286)
                         .+++|++|++++|.|+.+|. ..+..+++|++|++++|.++.+|..   .+...       ++|+.|++++|.+..+
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  503 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKN---SLKDENENFKNTYLLTSIDLRFNKLTKL  503 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCSS---SSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred             ccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCcCHH---HhccccccccccCCccEEECcCCcCCcc
Confidence               44455666666665555554 3344455555555555555555542   11211       1555555555554432


Q ss_pred             HHHHHHh-hcchhHHHHHhhhcccCCCCCCCCCC-hhhhccCCccCCCC------HHHHH-HHHHHHHhcCCHHHHHHHH
Q 023142          156 MEAASLF-ASEEMEEEAKKESMKTLMPVEVPNVS-EEEEQQTPKVVAPT------PEQII-AIKAAIVNSQTLEEVARLE  226 (286)
Q Consensus       156 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ls------~n~l~-~ip~~i~~~~~L~~l~l~~  226 (286)
                      +..  ++ ....      .+....+....+..+| ....+.+|+.++++      +|++. .+|..++++++|++|++++
T Consensus       504 p~~--~~~~~l~------~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~  575 (636)
T 4eco_A          504 SDD--FRATTLP------YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS  575 (636)
T ss_dssp             CGG--GSTTTCT------TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             Chh--hhhccCC------CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence            210  00 0000      0001111111111121 22467789999884      46655 7888999999999999999


Q ss_pred             HHHhcCCCCCCCc
Q 023142          227 KVLKSGQLPADLK  239 (286)
Q Consensus       227 N~l~~g~iP~~~~  239 (286)
                      |.+  +.||..+.
T Consensus       576 N~l--~~ip~~~~  586 (636)
T 4eco_A          576 NDI--RKVNEKIT  586 (636)
T ss_dssp             SCC--CBCCSCCC
T ss_pred             CcC--CccCHhHh
Confidence            999  68998766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=6.9e-21  Score=189.27  Aligned_cols=221  Identities=14%  Similarity=0.105  Sum_probs=122.9

Q ss_pred             HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCC-cCEEeccCCCCCCCC-CCCCCC--CCCeEeccCCcCcccCCcc
Q 023142            8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHLN--RLGTLIINNNRITRINPNI   83 (286)
Q Consensus         8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l~--~L~~L~Ls~N~l~~l~~~~   83 (286)
                      .+...+.|.++++|+.|++++|+++.+|..+..+++ |++|+|++|.++.+| .+..++  +|+.|++++|++++.++.+
T Consensus       584 ~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          584 KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             CCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             CcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence            333333555556666666666666655555555555 666666666665554 233222  2555555555554432211


Q ss_pred             c---c--CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHH----HhhCCCCcEEeCCCCChHH
Q 023142           84 G---E--FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV----IHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        84 ~---~--~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~----l~~l~~L~~L~l~~n~~~~  154 (286)
                      .   .  .+++|+.|++++|.|+.+|. ..+..+++|+.|+|++|+++.+|...+..    +..+++|+.|++++|.+..
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~  742 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS  742 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred             hhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence            1   1  22367777777777776665 34456777777777777777776631100    0122377777777777653


Q ss_pred             HHHHHHHh-hcchhHHHHHhhhcccCCCCCCCCCC-hhhhccCCccCCCCH------HHHH-HHHHHHHhcCCHHHHHHH
Q 023142          155 RMEAASLF-ASEEMEEEAKKESMKTLMPVEVPNVS-EEEEQQTPKVVAPTP------EQII-AIKAAIVNSQTLEEVARL  225 (286)
Q Consensus       155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ls~------n~l~-~ip~~i~~~~~L~~l~l~  225 (286)
                      ++...  + ....      .+....+....+..+| ....+.+|+.+++++      |++. .+|..|+++++|++|+++
T Consensus       743 lp~~l--~~~~l~------~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          743 LSDDF--RATTLP------YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             CCGGG--STTTCT------TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             chHHh--hhccCC------CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence            32111  0 0111      1111111111111122 224677888888865      5555 778888888888888888


Q ss_pred             HHHHhcCCCCCCCc
Q 023142          226 EKVLKSGQLPADLK  239 (286)
Q Consensus       226 ~N~l~~g~iP~~~~  239 (286)
                      +|.+  +.||..+.
T Consensus       815 ~N~L--~~Ip~~l~  826 (876)
T 4ecn_A          815 SNDI--RKVDEKLT  826 (876)
T ss_dssp             SSCC--CBCCSCCC
T ss_pred             CCCC--CccCHhhc
Confidence            8888  67888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=4.5e-21  Score=168.76  Aligned_cols=199  Identities=15%  Similarity=0.194  Sum_probs=150.1

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccC--CccccCCCCccEEEee
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHTLVLT   96 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls   96 (286)
                      -+.++++++.++.+|..+  .++|++|++++|.++.+|  .|..+++|++|++++|+++.+.  +..+..+++|++|+++
T Consensus         9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CCEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            367899999999999755  378999999999999997  3799999999999999998763  2334578999999999


Q ss_pred             cCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhc
Q 023142           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM  176 (286)
Q Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (286)
                      +|.++.++.  .+..+++|++|++++|.++.++...  .+..+++|++|++++|.+.....  ..|........+. +..
T Consensus        87 ~n~i~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~-l~~  159 (306)
T 2z66_A           87 FNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLK-MAG  159 (306)
T ss_dssp             SCSEEEEEE--EEETCTTCCEEECTTSEEESSTTTT--TTTTCTTCCEEECTTSCCEECST--TTTTTCTTCCEEE-CTT
T ss_pred             CCccccChh--hcCCCCCCCEEECCCCcccccccch--hhhhccCCCEEECCCCcCCccch--hhcccCcCCCEEE-CCC
Confidence            999998876  6889999999999999999876411  57899999999999998653211  1122211110000 001


Q ss_pred             cc----CCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142          177 KT----LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPA  236 (286)
Q Consensus       177 ~~----~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~  236 (286)
                      ..    ..+..+      ..+.+|+.+++++|+++.+ |..++.+++|++|++++|.+.  .+|.
T Consensus       160 n~l~~~~~~~~~------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~  216 (306)
T 2z66_A          160 NSFQENFLPDIF------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDT  216 (306)
T ss_dssp             CEEGGGEECSCC------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--BCCS
T ss_pred             CccccccchhHH------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--ccCh
Confidence            11    112222      3577899999999999866 578889999999999999984  3544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=8.8e-19  Score=144.74  Aligned_cols=140  Identities=15%  Similarity=0.173  Sum_probs=91.2

Q ss_pred             CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC--CCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      +.+.|.+.+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.  .+.+..+++|++|++++|++++..+.
T Consensus        52 ~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  130 (197)
T 4ezg_A           52 ANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT  130 (197)
T ss_dssp             ESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred             cCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence            3344445445666777777777777666555 34456777777777777764  34667777777777777777764445


Q ss_pred             cccCCCCccEEEeecCc-CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           83 IGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      .+..+++|++|++++|. ++.++   .+..+++|++|++++|+++.++.     +..+++|++|++++|++.
T Consensus       131 ~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          131 KINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             HHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC---
T ss_pred             HHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCcccC
Confidence            55667777777777776 66654   36667777777777777776653     567777777777777653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=2.5e-20  Score=172.46  Aligned_cols=119  Identities=18%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             CCCcCCCCCccEEEeeCCCCc-ccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcc--cCCcccc
Q 023142           12 SPHFFNAIKERELDLRGNKIA-VIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITR--INPNIGE   85 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~-~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~--l~~~~~~   85 (286)
                      +..|.++++|++|++++|.+. .++ ..+..+++|++|+|++|.++.+ | .|..+++|++|++++|++++  +....+.
T Consensus        47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  126 (455)
T 3v47_A           47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK  126 (455)
T ss_dssp             TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred             hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence            455777778888888888776 453 5567778888888888887765 3 57778888888888888776  2234466


Q ss_pred             CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      .+++|++|++++|.|+.+.+...+.++++|++|++++|.++.++.
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            777888888888888777542237778888888888887775533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=2e-21  Score=171.66  Aligned_cols=183  Identities=15%  Similarity=0.094  Sum_probs=93.5

Q ss_pred             CCccEEEeeCCCCc-cccccc--cCCCCcCEEeccCCCCCCC-C-----CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           19 IKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKL-E-----NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~-~l~~~~--~~l~~L~~L~Ls~N~l~~i-~-----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ++|++|++++|.++ .+|..+  ..+++|++|++++|.++.. +     .+..+++|++|++++|+++.+++..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            34555555555554 233333  4455555555555555531 1     1234555555555555555555444455555


Q ss_pred             ccEEEeecCcCCC---CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142           90 LHTLVLTNNRLVN---LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE  166 (286)
Q Consensus        90 L~~L~Ls~N~i~~---~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  166 (286)
                      |++|++++|++.+   ++....+..+++|++|++++|.++.++......+..+++|++|++++|.+...           
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-----------  239 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-----------  239 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-----------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-----------
Confidence            5555555555433   21111234455555555555555444332111234555555555555543211           


Q ss_pred             hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                   .|..+.   ....+.+|+.+++++|+|+.+|..+.  ++|++|++++|.++
T Consensus       240 -------------~p~~~~---~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          240 -------------VNPSAP---RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             -------------CCSCCS---SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC
T ss_pred             -------------chhhHH---hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC
Confidence                         111111   00012478888888888888877664  78888888888884

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=1e-20  Score=168.62  Aligned_cols=216  Identities=19%  Similarity=0.189  Sum_probs=158.8

Q ss_pred             cCHHHHhC--CCCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCccc
Q 023142            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRI   79 (286)
Q Consensus         4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l   79 (286)
                      ++.+.|..  +..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+| .+.  ++|++|++++|+++.+
T Consensus        61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~  138 (332)
T 2ft3_A           61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV  138 (332)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCC
T ss_pred             CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCcc
Confidence            34444444  34689999999999999999977 578888999999999999999987 343  8999999999999999


Q ss_pred             CCccccCCCCccEEEeecCcCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142           80 NPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME  157 (286)
Q Consensus        80 ~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~  157 (286)
                      ++..|..+++|++|++++|.++.  +.+ ..+..+ +|+.|++++|.++.+|..    +  .++|+.|++++|.+.....
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          139 PKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             CSGGGSSCSSCCEEECCSCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT
T ss_pred             CHhHhCCCccCCEEECCCCccccCCCCc-ccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH
Confidence            98888899999999999999964  443 467777 888888888888888763    2  2678888888887654310


Q ss_pred             HHHHhhcchhHHHHHhhhcccCCCCCCCCCC--hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142          158 AASLFASEEMEEEAKKESMKTLMPVEVPNVS--EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP  235 (286)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP  235 (286)
                        ..|....      .+....+....+..++  ....+.+|+.+++++|+++.+|..++.+++|++|++++|.++  .+|
T Consensus       211 --~~l~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~--~~~  280 (332)
T 2ft3_A          211 --EDLLRYS------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT--KVG  280 (332)
T ss_dssp             --TSSTTCT------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC--BCC
T ss_pred             --HHhcCCC------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC--ccC
Confidence              0111111      1111112222222222  124677888899999988888888888899999999988883  466


Q ss_pred             CCCc
Q 023142          236 ADLK  239 (286)
Q Consensus       236 ~~~~  239 (286)
                      ...+
T Consensus       281 ~~~~  284 (332)
T 2ft3_A          281 VNDF  284 (332)
T ss_dssp             TTSS
T ss_pred             hhHc
Confidence            5444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1.4e-21  Score=173.24  Aligned_cols=213  Identities=19%  Similarity=0.130  Sum_probs=139.5

Q ss_pred             CCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           16 FNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      ..+++|++|++++|+++.++ ..+..+++|++|++++|.++.++.+..+++|++|++++|++++++.     +++|++|+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~  105 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEE
Confidence            44678999999999999876 6788899999999999999977668899999999999999987752     25666666


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE  174 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      +++|.|+.++. .   .+++|+.|++++|+++.++..   .+..+++|++|++++|.+....... ++...      ..+
T Consensus       106 l~~n~l~~~~~-~---~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l------~~L  171 (317)
T 3o53_A          106 AANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAE-LAASS------DTL  171 (317)
T ss_dssp             CCSSCCSEEEE-C---CCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEGGG-GGGGT------TTC
T ss_pred             CCCCccCCcCc-c---ccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccHHH-Hhhcc------CcC
Confidence            66666665543 1   245566666666666655433   3455566666666666544321000 00000      011


Q ss_pred             hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCcc
Q 023142          175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKD  249 (286)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~  249 (286)
                      ....+....+..++....+.+|+.+++++|+++.+|+.+..+++|++|++++|.+.  .+|..+........++.
T Consensus       172 ~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEEC
T ss_pred             CEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEc
Confidence            11111111111111222366899999999999988888889999999999999984  58877655544444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.77  E-value=2.2e-20  Score=173.99  Aligned_cols=195  Identities=21%  Similarity=0.226  Sum_probs=107.3

Q ss_pred             CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L   93 (286)
                      .+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|+++++++  +..+++|+.|
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  270 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  270 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence            34444444445554444444333 33355555555555555555555555666666666666665544  3456666666


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK  173 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      ++++|.++.+++   +..+++|+.|++++|++..++.     +..+++|+.|++++|.+.....    +...      ..
T Consensus       271 ~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~----~~~l------~~  332 (466)
T 1o6v_A          271 KLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDISP----VSSL------TK  332 (466)
T ss_dssp             ECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCGG----GGGC------TT
T ss_pred             ECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCchh----hccC------cc
Confidence            666666665543   5566666666666666665543     4566677777777766543321    1111      11


Q ss_pred             hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          174 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                      +....+....+..++....+.+|+.+++++|+++.+++ +..+++|++|++.+|.+.
T Consensus       333 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          333 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred             CCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence            11112222222223334556677777777777774444 677777777777777774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=6.6e-21  Score=182.61  Aligned_cols=191  Identities=16%  Similarity=0.118  Sum_probs=122.7

Q ss_pred             CcCCCCCccEEEeeCCCCccc---cccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCC-ccccCCC
Q 023142           14 HFFNAIKERELDLRGNKIAVI---ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP-NIGEFLP   88 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l---~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~   88 (286)
                      .+..+++|+.|++++|.++.+   +..+..+++|++|++++|.++.+| .+..+++|+.|++++|+++++++ ..+..++
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            455666667777777766644   455556677777777777776665 56677777777777777776655 4556677


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE  166 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  166 (286)
                      +|++|++++|.++...+ ..+.++++|++|++++|+++.  +|.    .+..+++|+.|++++|.+...           
T Consensus       425 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~-----------  488 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLEQI-----------  488 (606)
T ss_dssp             TCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEE-----------
T ss_pred             cCCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCCcc-----------
Confidence            77777777777766554 466677777777777777764  344    466677777777777764321           


Q ss_pred             hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142          167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIP  241 (286)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~  241 (286)
                                   .+..+      ..+.+|+.+++++|+++.+ |..++.+++|++|++++|.++  .+|..+...
T Consensus       489 -------------~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l  543 (606)
T 3vq2_A          489 -------------SWGVF------DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHF  543 (606)
T ss_dssp             -------------CTTTT------TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGS
T ss_pred             -------------Chhhh------cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhh
Confidence                         11111      2355677777777777744 566777777777777777773  566664444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=4.3e-19  Score=146.63  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=128.0

Q ss_pred             cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      ...+++|+.|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            345678999999999999998 5677999999999999998888899999999999999999985556678999999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK  173 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      +++|.|+...+ ..+..+++|++|++++|+ ++.++.     +..+++|++|++++|.+..++                 
T Consensus       119 Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i~~~~-----------------  175 (197)
T 4ezg_A          119 ISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHDYR-----------------  175 (197)
T ss_dssp             CCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCCCCCT-----------------
T ss_pred             ecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCCcChH-----------------
Confidence            99999997443 478899999999999998 888864     789999999999999754321                 


Q ss_pred             hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142          174 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA  208 (286)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~  208 (286)
                                     ....+.+|+.+++++|+|..
T Consensus       176 ---------------~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 ---------------GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ---------------TGGGCSSCCEEEECBC----
T ss_pred             ---------------HhccCCCCCEEEeeCcccCC
Confidence                           11236678899998888753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=4.1e-20  Score=183.75  Aligned_cols=226  Identities=12%  Similarity=0.054  Sum_probs=121.3

Q ss_pred             cCCCCCccEEEeeCCCCccccc--cccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCC-cc
Q 023142           15 FFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK-LH   91 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~-L~   91 (286)
                      +..+++|+.|++++|+++.+|.  .+..+++|+.|+|++|.++.+|.|+.+++|+.|+|++|+++.+|..+ ..+++ |+
T Consensus       544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L~  622 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAFTDQVE  622 (876)
T ss_dssp             TTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTS-CEECTTCC
T ss_pred             ccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHH-hhccccCC
Confidence            4445566666666666666665  56666666666666666666666666666666666666666555443 35555 66


Q ss_pred             EEEeecCcCCCCCCCccCCCC-------------------------------CCccEEEecCCcCCCCCCchHHHHhhCC
Q 023142           92 TLVLTNNRLVNLVEIDPLTSL-------------------------------PKLQFLSLLDNSITKKPNYRLYVIHKLK  140 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~~~l~~l-------------------------------~~L~~L~L~~N~l~~ip~~~~~~l~~l~  140 (286)
                      .|++++|.|+.+|.  .+..+                               ++|+.|++++|.++.+|..   .+..++
T Consensus       623 ~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~---~~~~l~  697 (876)
T 4ecn_A          623 GLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE---LFATGS  697 (876)
T ss_dssp             EEECCSSCCCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH---HHHTTC
T ss_pred             EEECcCCCCCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH---HHccCC
Confidence            66666666665543  23222                               3555555665555555542   334566


Q ss_pred             CCcEEeCCCCChHHHHHHHHHhhcchh-HHHHHhhhcccCCCCCCCCCChh-h--hccCCccCCCCHHHHHHHHHHHHhc
Q 023142          141 SLRVLDFKKVKNKERMEAASLFASEEM-EEEAKKESMKTLMPVEVPNVSEE-E--EQQTPKVVAPTPEQIIAIKAAIVNS  216 (286)
Q Consensus       141 ~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~l~ls~n~l~~ip~~i~~~  216 (286)
                      +|+.|++++|.+..++.  ..|....+ ...+..+....+....+..+|.. .  .+.+|+.+++++|+|+.+|..++.+
T Consensus       698 ~L~~L~Ls~N~L~~ip~--~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L  775 (876)
T 4ecn_A          698 PISTIILSNNLMTSIPE--NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS  775 (876)
T ss_dssp             CCSEEECCSCCCSCCCT--TSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred             CCCEEECCCCcCCccCh--HHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcC
Confidence            66666666666543221  11111100 00000111111111122223332 2  4667777777777777777777777


Q ss_pred             CCHHHHHHHH------HHHhcCCCCCCCccCCCCCCCcc
Q 023142          217 QTLEEVARLE------KVLKSGQLPADLKIPDYDSGSKD  249 (286)
Q Consensus       217 ~~L~~l~l~~------N~l~~g~iP~~~~~~~~~~~~~~  249 (286)
                      ++|+.|++++      |.+ .+.+|..+........++.
T Consensus       776 ~~L~~L~Ls~N~~ls~N~l-~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          776 SQLKAFGIRHQRDAEGNRI-LRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             TTCCEEECCCCBCTTCCBC-CCCCCTTGGGCSSCCEEEC
T ss_pred             CCCCEEECCCCCCcccccc-cccChHHHhcCCCCCEEEC
Confidence            7777777755      555 2567766665554444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2.5e-18  Score=144.66  Aligned_cols=152  Identities=21%  Similarity=0.261  Sum_probs=131.1

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      -+.++++++.++.+|..+.  ++++.|++++|.|+.++  .|..+++|+.|+|++|+|+.+.+..|.++++|++|+|++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3689999999999997653  78999999999999886  6899999999999999999998888899999999999999


Q ss_pred             cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhccc
Q 023142           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKT  178 (286)
Q Consensus        99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (286)
                      .|+.+++ ..|.++++|++|+|++|.++.++..   .+..+++|++|++++|.+..++                      
T Consensus        91 ~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~----------------------  144 (220)
T 2v9t_B           91 KITELPK-SLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIA----------------------  144 (220)
T ss_dssp             CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCC----------------------
T ss_pred             cCCccCH-hHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEEC----------------------
Confidence            9999987 6789999999999999999988654   6889999999999999864321                      


Q ss_pred             CCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142          179 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIA  208 (286)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~  208 (286)
                        +..+      ..+.+|+.+++++|.+.+
T Consensus       145 --~~~~------~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          145 --KGTF------SPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             --TTTT------TTCTTCCEEECCSSCEEC
T ss_pred             --HHHH------hCCCCCCEEEeCCCCcCC
Confidence              1111      135678999999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.76  E-value=3.8e-20  Score=177.33  Aligned_cols=223  Identities=16%  Similarity=0.084  Sum_probs=152.4

Q ss_pred             cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCc-ccCCccccCCCCcc
Q 023142           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLH   91 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~   91 (286)
                      |.++++|++|++++|+++.+|..+..+++|++|++++|.++.+ + .+..+++|++|++++|.+. .+++..+..+++|+
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            7778888888888888888887777788888888888888876 3 6778888888888888877 56666677888888


Q ss_pred             EEEeecCcCCCCC--CCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHH
Q 023142           92 TLVLTNNRLVNLV--EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEE  169 (286)
Q Consensus        92 ~L~Ls~N~i~~~~--~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  169 (286)
                      +|++++|.++.+.  + ..+..+++|++|++++|.+..++..   .+..+++|+.|++++|.+...... ..|....   
T Consensus       354 ~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~---  425 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQ-SPFQNLH---  425 (606)
T ss_dssp             EEECCSSCCCEEEEST-TTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTC-CTTTTCT---
T ss_pred             EEECCCCccccccCcc-hhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccc-hhhhCcc---
Confidence            8888888887764  3 3677888888888888888766443   577888888888888876432100 0111111   


Q ss_pred             HHHhhhcccCCCCCCCCC-Ch-hhhccCCccCCCCHHHHHH--HH--HHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCC
Q 023142          170 EAKKESMKTLMPVEVPNV-SE-EEEQQTPKVVAPTPEQIIA--IK--AAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY  243 (286)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~l~ls~n~l~~--ip--~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~  243 (286)
                         .+....+....+... +. ...+.+|+.+++++|+++.  ++  ..+..+++|++|++++|.+. +.+|..+.....
T Consensus       426 ---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  501 (606)
T 3t6q_A          426 ---LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKM  501 (606)
T ss_dssp             ---TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred             ---cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-ccChhhhccccC
Confidence               111111111111110 11 1357788999999998874  22  46788899999999999884 455666665554


Q ss_pred             CCCCcc
Q 023142          244 DSGSKD  249 (286)
Q Consensus       244 ~~~~~~  249 (286)
                      ...++.
T Consensus       502 L~~L~L  507 (606)
T 3t6q_A          502 MNHVDL  507 (606)
T ss_dssp             CCEEEC
T ss_pred             CCEEEC
Confidence            444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=4e-18  Score=140.63  Aligned_cols=126  Identities=21%  Similarity=0.259  Sum_probs=116.1

Q ss_pred             cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (286)
Q Consensus        22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i  100 (286)
                      +.+++++|.++.+|..+  .++|++|++++|.|+.+| .|..+++|+.|+|++|+|+.+++..|.++++|++|+|++|.|
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            68999999999999655  368999999999999997 789999999999999999999998899999999999999999


Q ss_pred             CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142          101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      +.+++ ..|.++++|++|+|++|.++.++..   .+..+++|+.|++++|++.
T Consensus        91 ~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred             CEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCee
Confidence            99987 6899999999999999999999875   5788999999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.76  E-value=3e-18  Score=163.99  Aligned_cols=132  Identities=27%  Similarity=0.305  Sum_probs=121.2

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      +++++|+|++|+|+.+| ..|.++++|++|+|++|.|+.++  .|.++++|++|+|++|+|+.+++..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            57999999999999998 57889999999999999999985  5899999999999999999999999999999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCC--CCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK--PNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i--p~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ++|+|+.+++ ..|+++++|++|++++|.++.+  |.    .++.+++|++|++++|.+..+
T Consensus       132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch----hhccchhhhhhcccCcccccc
Confidence            9999999987 6799999999999999999865  44    678999999999999987543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=8e-18  Score=142.36  Aligned_cols=152  Identities=21%  Similarity=0.187  Sum_probs=131.6

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      ..+.++++++.++.+|..+  .++|++|+|++|.|+.++  .|..+++|+.|+|++|+|+.+++..|..+++|++|+|++
T Consensus        20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4678999999999999765  389999999999999884  689999999999999999999998888999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK  177 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (286)
                      |.|+.+++ ..|..+++|++|++++|.++.+|.    .+..+++|++|++++|.+..++                     
T Consensus        98 N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~---------------------  151 (229)
T 3e6j_A           98 NQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLKSIP---------------------  151 (229)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCCCCCC---------------------
T ss_pred             CcCCccCh-hHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcCCccC---------------------
Confidence            99999987 678999999999999999999998    6899999999999999864221                     


Q ss_pred             cCCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142          178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA  208 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~  208 (286)
                         +..+      ..+.+|+.+++++|.+.+
T Consensus       152 ---~~~~------~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          152 ---HGAF------DRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             ---TTTT------TTCTTCCEEECTTSCBCT
T ss_pred             ---HHHH------hCCCCCCEEEeeCCCccC
Confidence               1111      135678999999998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=3.3e-18  Score=154.30  Aligned_cols=136  Identities=23%  Similarity=0.249  Sum_probs=111.9

Q ss_pred             CCccEEEeeCCCCccccc-ccc-CCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           19 IKERELDLRGNKIAVIEN-LGA-TEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~-~~~-~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      ..++.|+|++|+|+.++. .+. .+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|..+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            458899999999998874 454 7899999999999999875  588999999999999999999888888899999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      |++|.|+.+++ ..|.++++|+.|+|++|.++.+|...+..+..+++|++|++++|.+..+
T Consensus       119 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          119 LYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            99999998876 6888999999999999999988875221226788999999999987644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=5.3e-20  Score=171.29  Aligned_cols=193  Identities=16%  Similarity=0.135  Sum_probs=102.3

Q ss_pred             HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142            8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus         8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      .++..+.+..+++|++|++++|+|+.+|  +..+++|++|++++|.++.++ ++.+++|++|++++|++++++   +..+
T Consensus        53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l  126 (457)
T 3bz5_A           53 SITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQN  126 (457)
T ss_dssp             CCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTC
T ss_pred             CcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCC
Confidence            3333344555555555555555555543  444555555555555555543 555555555555555555543   3455


Q ss_pred             CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142           88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE  166 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  166 (286)
                      ++|++|++++|.|++++    ++.+++|++|++++|+ +..++      +..+++|++|++++|.+..++     +....
T Consensus       127 ~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~l~-----l~~l~  191 (457)
T 3bz5_A          127 PLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNKITELD-----VSQNK  191 (457)
T ss_dssp             TTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSCCCCCC-----CTTCT
T ss_pred             CcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCCccceec-----cccCC
Confidence            55555555555555532    3445555555555552 22221      345666666666666654432     11111


Q ss_pred             hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                            .+....+....+..+ ..+.+.+|+.+++++|+++.+|  ++.+++|+.|++++|.++
T Consensus       192 ------~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          192 ------LLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ------TCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             ------CCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence                  011111111111111 1235677888888888888776  778888888888888884

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=4.3e-19  Score=166.43  Aligned_cols=216  Identities=17%  Similarity=0.110  Sum_probs=144.9

Q ss_pred             cCHHHHhCC--CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC------------------CCCC
Q 023142            4 LTADLIWKS--PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPHL   63 (286)
Q Consensus         4 Lt~~~i~~~--~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~l   63 (286)
                      |+.+.+...  ..|.++++|++|+|++|.++.+++ +..+++|++|+|++|.|+.++.                  ...+
T Consensus        41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l  119 (487)
T 3oja_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG  119 (487)
T ss_dssp             CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCC
T ss_pred             eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcccc
Confidence            444445542  357778888888888888876554 5567777777777776654321                  1235


Q ss_pred             CCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCC-CCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142           64 NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL  142 (286)
Q Consensus        64 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~-~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L  142 (286)
                      ++|+.|++++|+++++++..+..+++|++|++++|.|+++++ ..+. .+++|+.|+|++|.++.++.     +..+++|
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~-----~~~l~~L  193 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKL  193 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEEC-----CCCCTTC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCccccccc-----cccCCCC
Confidence            778888888888888877777788888888888888887654 3554 68888888888888887765     3458888


Q ss_pred             cEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccCCccCCCCHHHHH--HHHHHHHhcCCH
Q 023142          143 RVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTL  219 (286)
Q Consensus       143 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~--~ip~~i~~~~~L  219 (286)
                      ++|++++|.+..++..   |....      .+....+....+..+|.. ..+.+|+.+++++|.+.  .+|..++.++.|
T Consensus       194 ~~L~Ls~N~l~~~~~~---~~~l~------~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          194 KTLDLSSNKLAFMGPE---FQSAA------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             CEEECCSSCCCEECGG---GGGGT------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             CEEECCCCCCCCCCHh---HcCCC------CccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            8888888887654321   21111      111111111111112221 35678999999999998  888999999999


Q ss_pred             HHHHHHHHHHhcCCCC
Q 023142          220 EEVARLEKVLKSGQLP  235 (286)
Q Consensus       220 ~~l~l~~N~l~~g~iP  235 (286)
                      +.+++.....-.|.-|
T Consensus       265 ~~l~~~~~~~~~~~~~  280 (487)
T 3oja_A          265 QTVAKQTVKKLTGQNE  280 (487)
T ss_dssp             HHHHHHHHHHHTSSSS
T ss_pred             cEEeccccccccCCCc
Confidence            9999975544334444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=4.5e-20  Score=179.22  Aligned_cols=221  Identities=19%  Similarity=0.131  Sum_probs=118.8

Q ss_pred             cCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142           15 FFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~   91 (286)
                      |.++++|++|++++|.++.+ |..+..+++|++|+|++|.++.+|  .|..+++|++|++++|+++.+++..|..+++|+
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            55566666666666666644 344555666666666666666664  366666666666666666666655556666666


Q ss_pred             EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchh----
Q 023142           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEM----  167 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~----  167 (286)
                      +|++++|.++..++ ..+.++++|++|++++|.++.++...+ .+..+++|+.|++++|.+......  .|.....    
T Consensus       125 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L  200 (680)
T 1ziw_A          125 TLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPG--CFHAIGRLFGL  200 (680)
T ss_dssp             EEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCEESEEECTTCCCCCBCTT--GGGGSSEECEE
T ss_pred             EEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHh-hccccccccEEECCCCcccccChh--hhhhhhhhhhh
Confidence            66666666666554 456666666666666666665543210 112345666666666654322110  0110000    


Q ss_pred             ------------HHHH-----HhhhcccCCCCCCCCC-C-hhhhcc--CCccCCCCHHHHHHHH-HHHHhcCCHHHHHHH
Q 023142          168 ------------EEEA-----KKESMKTLMPVEVPNV-S-EEEEQQ--TPKVVAPTPEQIIAIK-AAIVNSQTLEEVARL  225 (286)
Q Consensus       168 ------------~~~~-----~~~~~~~~~~~~~~~~-~-~~~~~~--~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~  225 (286)
                                  ..+.     ..+....+....+... + ....+.  +|+.+++++|+++.++ ..++.+++|++|+++
T Consensus       201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (680)
T 1ziw_A          201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE  280 (680)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence                        0000     0000001111111100 0 112233  4888888888888554 667888888888888


Q ss_pred             HHHHhcCCCCCCCcc
Q 023142          226 EKVLKSGQLPADLKI  240 (286)
Q Consensus       226 ~N~l~~g~iP~~~~~  240 (286)
                      +|.+. +.+|..+..
T Consensus       281 ~n~l~-~~~~~~~~~  294 (680)
T 1ziw_A          281 YNNIQ-HLFSHSLHG  294 (680)
T ss_dssp             SCCBS-EECTTTTTT
T ss_pred             CCccC-ccChhhhcC
Confidence            88874 445544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=8.5e-21  Score=167.88  Aligned_cols=205  Identities=14%  Similarity=0.079  Sum_probs=143.2

Q ss_pred             CCCCccEEEeeCCCCc-cccccc--cCCCCcCEEeccCCCCCCCC-CCCCC-----CCCCeEeccCCcCcccCCccccCC
Q 023142           17 NAIKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKLE-NMPHL-----NRLGTLIINNNRITRINPNIGEFL   87 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~-~l~~~~--~~l~~L~~L~Ls~N~l~~i~-~~~~l-----~~L~~L~Ls~N~l~~l~~~~~~~l   87 (286)
                      ++++|++|++++|+++ .+|..+  ..+++|++|++++|.++.+| .+..+     ++|++|++++|+++++++..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5788889999999888 577654  67888999999999888776 34444     888999999999988887777888


Q ss_pred             CCccEEEeecCcCCCC---CCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhc
Q 023142           88 PKLHTLVLTNNRLVNL---VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS  164 (286)
Q Consensus        88 ~~L~~L~Ls~N~i~~~---~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  164 (286)
                      ++|++|++++|++.+.   +....+..+++|++|++++|.++.++......+..+++|++|++++|.+..... ...+..
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~  251 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDW  251 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhh
Confidence            8999999999887652   220123778889999999998886554322355678888999998888654320 001111


Q ss_pred             chhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          165 EEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                      .      ..+....+....+..+|.... .+|+.+++++|+|+.+|. +..+++|++|++++|.++
T Consensus       252 l------~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          252 P------SQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             C------TTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             c------CCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            1      111111111111112222211 589999999999998876 899999999999999885

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=1.3e-19  Score=168.61  Aligned_cols=193  Identities=15%  Similarity=0.143  Sum_probs=153.6

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~   91 (286)
                      +..+.++++|++|++++|.++.+| .+..+++|++|++++|.++.++ ++.+++|++|++++|++++++   +..+++|+
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~  109 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLT  109 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence            445677899999999999999987 5677999999999999999987 899999999999999999984   57899999


Q ss_pred             EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-hHHHHHHHHHhhcchhHHH
Q 023142           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-NKERMEAASLFASEEMEEE  170 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~  170 (286)
                      +|++++|.+++++    ++.+++|++|++++|+++.++      ++.+++|++|++++|. +..+.     +...     
T Consensus       110 ~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~~~~-----~~~l-----  169 (457)
T 3bz5_A          110 YLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLD-----VTPQ-----  169 (457)
T ss_dssp             EEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCCCCC-----CTTC-----
T ss_pred             EEECCCCcCCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCcccccc-----cccC-----
Confidence            9999999999863    788999999999999999874      5789999999999994 22110     1111     


Q ss_pred             HHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142          171 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP  235 (286)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP  235 (286)
                       ..+....+....+..++ ...+.+|+.++++.|+++.+  .++.+++|++|++++|.+.  .||
T Consensus       170 -~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~--~ip  228 (457)
T 3bz5_A          170 -TQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT--EID  228 (457)
T ss_dssp             -TTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCS--CCC
T ss_pred             -CcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCccc--ccC
Confidence             11111112222222222 34677899999999999877  3889999999999999995  377

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=3.8e-18  Score=143.54  Aligned_cols=151  Identities=23%  Similarity=0.239  Sum_probs=129.5

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC---CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      -+.+++++|.++.+|..+  ...+++|+|++|.|+.++   .|..+++|+.|+|++|+|+.+++..|..+++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            368999999999999765  356799999999999873   378999999999999999999998889999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK  177 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (286)
                      |.|+.+++ ..|.++++|++|+|++|.++.++..   .+..+++|++|++++|.+..+                      
T Consensus        91 N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~----------------------  144 (220)
T 2v70_A           91 NRLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTV----------------------  144 (220)
T ss_dssp             SCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCB----------------------
T ss_pred             CccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEE----------------------
Confidence            99999987 6799999999999999999988543   688999999999999985422                      


Q ss_pred             cCCCCCCCCCChhhhccCCccCCCCHHHHH
Q 023142          178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQII  207 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~  207 (286)
                        .+..+      ..+.+|+.+++++|.+.
T Consensus       145 --~~~~~------~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          145 --APGAF------DTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             --CTTTT------TTCTTCCEEECCSCCEE
T ss_pred             --CHHHh------cCCCCCCEEEecCcCCc
Confidence              12222      13668999999999887

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=7.3e-18  Score=138.78  Aligned_cols=127  Identities=24%  Similarity=0.278  Sum_probs=114.3

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-C--CCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-N--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~--~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      -+.+++++|+++.+|..+.  .++++|++++|.|+.++ .  |..+++|++|+|++|+|+++++..|..+++|++|+|++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3789999999999997654  48999999999999885 2  88999999999999999999888888999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      |+|+.+++ ..|.++++|++|+|++|+++.++..   .+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCcc
Confidence            99999987 6799999999999999999976443   6889999999999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.74  E-value=1.2e-19  Score=172.66  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             CcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC-CccccCCCCcc
Q 023142           14 HFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN-PNIGEFLPKLH   91 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~   91 (286)
                      .|.++++|++|++++|+|+.+ |..+..+++|++|++++|.|+.+|.. .+++|++|++++|+++.++ +..|..+++|+
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred             hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCccc
Confidence            566677777777777777765 35566667777777777777666644 6666777777777766654 24455666666


Q ss_pred             EEEeecCcCC
Q 023142           92 TLVLTNNRLV  101 (286)
Q Consensus        92 ~L~Ls~N~i~  101 (286)
                      +|++++|.|+
T Consensus       150 ~L~L~~n~l~  159 (562)
T 3a79_B          150 FLGLSAAKFR  159 (562)
T ss_dssp             EEEEECSBCC
T ss_pred             EEecCCCccc
Confidence            6666666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=3.6e-18  Score=147.56  Aligned_cols=135  Identities=22%  Similarity=0.246  Sum_probs=84.2

Q ss_pred             HhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142            9 IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (286)
Q Consensus         9 i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~   88 (286)
                      +++.+.+..+++|+.|++++|.|+.++ .+..+++|++|++++|.|+.++.+..+++|++|++++|++++++...  . +
T Consensus        31 i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~--~-~  106 (263)
T 1xeu_A           31 VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--S-A  106 (263)
T ss_dssp             TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC--C-S
T ss_pred             cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc--c-C
Confidence            334344555666667777776666666 34456666777777776666655666666677777776666665422  2 6


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      +|++|++++|.|+.++   .+..+++|+.|++++|+++.++     .+..+++|++|++++|.+...
T Consensus       107 ~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCBC
T ss_pred             cccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcch
Confidence            6666666666666653   3666666666666666666654     256666666666666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=2.8e-17  Score=133.20  Aligned_cols=130  Identities=20%  Similarity=0.270  Sum_probs=116.6

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      ..+.+++++++++.+|..+  .++|++|++++|.++.++  .|..+++|++|++++|+++.+++..|..+++|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3578999999999999554  478999999999999886  478999999999999999999988888999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      |.|+.+++ ..+..+++|++|++++|.++.++..   .+..+++|++|++++|++...
T Consensus        86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCCeecc
Confidence            99999987 6789999999999999999999874   568899999999999997543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=9.7e-18  Score=146.96  Aligned_cols=141  Identities=28%  Similarity=0.316  Sum_probs=125.5

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      .++.+.+...+.+..+++|+.|++++|+++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++  
T Consensus        52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~--  128 (291)
T 1h6t_A           52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--  128 (291)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--
T ss_pred             EccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--
Confidence            3455566677778999999999999999999887 7789999999999999999988999999999999999999984  


Q ss_pred             cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      .+..+++|+.|++++|.|+.++   .+..+++|+.|++++|.++.++.     +..+++|++|++++|.+..
T Consensus       129 ~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          129 GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCB
T ss_pred             hhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcCCC
Confidence            3568999999999999999983   58899999999999999998875     7899999999999998653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=4.3e-19  Score=165.05  Aligned_cols=213  Identities=18%  Similarity=0.173  Sum_probs=106.1

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCcc
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI   83 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~   83 (286)
                      ++.+.++..+.+.++++|+.|++++|+++.+|...   ++|++|++++|.++.+|.++.+++|++|++++|+++++|.  
T Consensus       180 L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--  254 (454)
T 1jl5_A          180 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--  254 (454)
T ss_dssp             CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--
T ss_pred             CcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--
Confidence            33444455556677777777777777777666432   4677777777777777777777777888887777777653  


Q ss_pred             ccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchH------------HHHhhC-CCCcEEeCCCC
Q 023142           84 GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL------------YVIHKL-KSLRVLDFKKV  150 (286)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~------------~~l~~l-~~L~~L~l~~n  150 (286)
                        .+++|+.|++++|.+++++.  .   +++|+.|++++|.++.++....            ..+..+ ++|++|++++|
T Consensus       255 --~~~~L~~L~l~~N~l~~l~~--~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N  327 (454)
T 1jl5_A          255 --LPPSLEALNVRDNYLTDLPE--L---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN  327 (454)
T ss_dssp             --CCTTCCEEECCSSCCSCCCC--C---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS
T ss_pred             --cccccCEEECCCCcccccCc--c---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC
Confidence              23567777777777766654  1   2556666666666655432100            000011 35555555555


Q ss_pred             ChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHH---HHHHHHhc-----------
Q 023142          151 KNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA---IKAAIVNS-----------  216 (286)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~---ip~~i~~~-----------  216 (286)
                      .+..++..   +         ..+....+....+..+|.  .+.+|+.+++++|+++.   +|..+.++           
T Consensus       328 ~l~~lp~~---~---------~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~  393 (454)
T 1jl5_A          328 KLIELPAL---P---------PRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE  393 (454)
T ss_dssp             CCSCCCCC---C---------TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred             cccccccc---C---------CcCCEEECCCCccccccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence            54432110   0         111111111111222222  35678888999988886   55666666           


Q ss_pred             --CCHHHHHHHHHHHhc-CCCCCCCccCC
Q 023142          217 --QTLEEVARLEKVLKS-GQLPADLKIPD  242 (286)
Q Consensus       217 --~~L~~l~l~~N~l~~-g~iP~~~~~~~  242 (286)
                        ++|+.|++++|.+++ +.||.++....
T Consensus       394 ~~~~L~~L~ls~N~l~~~~~iP~sl~~L~  422 (454)
T 1jl5_A          394 LPQNLKQLHVETNPLREFPDIPESVEDLR  422 (454)
T ss_dssp             -----------------------------
T ss_pred             ccCcCCEEECCCCcCCccccchhhHhhee
Confidence              889999999999962 37888775543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=4e-18  Score=163.70  Aligned_cols=174  Identities=18%  Similarity=0.233  Sum_probs=110.5

Q ss_pred             CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      ..+..+++|+.|++++|.|..++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.++  .+..+++|+.
T Consensus        37 ~~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~  113 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS  113 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred             cchhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence            334455667777777777766653 4456777777777777776655666777777777777776664  2456677777


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK  172 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  172 (286)
                      |+|++|.|+.++   .+..+++|+.|+|++|.++.++     .+..+++|+.|++++|.+..+.          +     
T Consensus       114 L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~~~----------~-----  170 (605)
T 1m9s_A          114 LSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIV----------P-----  170 (605)
T ss_dssp             EECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCCCCG----------G-----
T ss_pred             EEecCCCCCCCc---cccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCCCch----------h-----
Confidence            777777776653   3666677777777777776663     3666777777777777643211          0     


Q ss_pred             hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                       ...+.+|+.|+|++|+|+.+| .+..+++|+.|++++|.+.
T Consensus       171 -----------------l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          171 -----------------LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             -----------------GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             -----------------hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence                             012445666666666666653 4666777777777777663

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=7.2e-18  Score=152.11  Aligned_cols=146  Identities=23%  Similarity=0.288  Sum_probs=125.7

Q ss_pred             cCHHHHhC--CCCcC-CCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCc
Q 023142            4 LTADLIWK--SPHFF-NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT   77 (286)
Q Consensus         4 Lt~~~i~~--~~~~~-~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~   77 (286)
                      |+.+.|+.  +..|. ++++|+.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++  .|..+++|+.|+|++|+|+
T Consensus        46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence            44444544  23355 8999999999999999887 56888999999999999999886  5899999999999999999


Q ss_pred             ccCCccccCCCCccEEEeecCcCCCCCCCccC---CCCCCccEEEecCCcCCCCCCchHHHHhhCCC--CcEEeCCCCCh
Q 023142           78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL---TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS--LRVLDFKKVKN  152 (286)
Q Consensus        78 ~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l---~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~--L~~L~l~~n~~  152 (286)
                      .+++..|..+++|+.|+|++|.|+.++. ..|   ..+++|+.|+|++|+|+.+|..   .+..++.  ++.|++++|++
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          126 VVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCE
T ss_pred             EECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCc
Confidence            9998888999999999999999999987 555   6799999999999999999864   6788887  48899999997


Q ss_pred             H
Q 023142          153 K  153 (286)
Q Consensus       153 ~  153 (286)
                      .
T Consensus       202 ~  202 (361)
T 2xot_A          202 E  202 (361)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=8.4e-18  Score=142.75  Aligned_cols=135  Identities=16%  Similarity=0.147  Sum_probs=109.9

Q ss_pred             CcCCCCCccEEEeeCCC-Cccccc-cccCCCCcCEEeccC-CCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142           14 HFFNAIKERELDLRGNK-IAVIEN-LGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~-l~~l~~-~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~   88 (286)
                      .|.++++|+.|++++|. ++.++. .+..+++|++|++++ |.++.++  .|..+++|++|++++|+++++|.  +..++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--ccccc
Confidence            57788999999999996 888874 677888999999998 8888875  57788899999999999888865  56777


Q ss_pred             Ccc---EEEeecC-cCCCCCCCccCCCCCCcc-EEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-hHHH
Q 023142           89 KLH---TLVLTNN-RLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-NKER  155 (286)
Q Consensus        89 ~L~---~L~Ls~N-~i~~~~~~~~l~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-~~~~  155 (286)
                      +|+   +|++++| .++.+++ ..|.++++|+ .|++++|.++.+|..   .+.. ++|+.|++++|+ +..+
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~---~~~~-~~L~~L~L~~n~~l~~i  195 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGY---AFNG-TKLDAVYLNKNKYLTVI  195 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTT---TTTT-CEEEEEECTTCTTCCEE
T ss_pred             ccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHh---hcCC-CCCCEEEcCCCCCcccC
Confidence            777   8999998 8888876 6788888898 999999988888774   3333 788888888884 6543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=5.1e-18  Score=146.62  Aligned_cols=136  Identities=24%  Similarity=0.319  Sum_probs=82.0

Q ss_pred             CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142            5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus         5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      +.+.|+..+.+..+++|+.|++++|+|+.++. +..+++|++|++++|+++.++.+.. ++|+.|++++|++++++.  +
T Consensus        49 ~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~--l  124 (263)
T 1xeu_A           49 DNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS--L  124 (263)
T ss_dssp             TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG--G
T ss_pred             cCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh--h
Confidence            34444454555666666666666666666655 5556666666666666666654444 666666666666666532  3


Q ss_pred             cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           85 EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      ..+++|+.|++++|+|++++   .+..+++|+.|++++|+++.++     .+..+++|+.|++++|++
T Consensus       125 ~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCCEEEEEEEEE
T ss_pred             cCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCCEEeCCCCcc
Confidence            45666666666666666653   3555666666666666666552     355666666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.72  E-value=3.2e-18  Score=170.41  Aligned_cols=215  Identities=19%  Similarity=0.155  Sum_probs=116.6

Q ss_pred             CcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142           14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L   90 (286)
                      .|..+++|+.|++++|+++.++ ..+..+++|++|+|++|.++.+ + .|..+++|+.|++++|+++.+++..|..+++|
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  364 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL  364 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred             hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence            3455556666666666665443 4455556666666666666554 2 45566666666666666666655555556666


Q ss_pred             cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCc------------------hHHHHhhCCCCcEEeCCCCCh
Q 023142           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY------------------RLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~------------------~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      ++|++++|.++.++.      +++|+.|++++|+++.+|..                  ....+..+++|+.|++++|.+
T Consensus       365 ~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  438 (844)
T 3j0a_A          365 QTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF  438 (844)
T ss_dssp             CEEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred             CEEECCCCCCCcccC------CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence            666666665554432      22233333333333322211                  112456899999999999986


Q ss_pred             HHHHHHHHHhhcchhHHHHHhhhcccCC--CCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 023142          153 KERMEAASLFASEEMEEEAKKESMKTLM--PVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l  229 (286)
                      ....... .+........+ .+..+.+.  +...........+.+|+.+++++|+++.+| ..+..+++|++|++++|.+
T Consensus       439 ~~~~~~~-~~~~~~~L~~L-~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  516 (844)
T 3j0a_A          439 SSCSGDQ-TPSENPSLEQL-FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL  516 (844)
T ss_dssp             CCCCSSS-SSCSCTTCCBC-EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred             ccccccc-ccccCCccccc-cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence            5321100 01111000000 00111110  000000001135789999999999999777 4578999999999999999


Q ss_pred             hcCCCCCCC
Q 023142          230 KSGQLPADL  238 (286)
Q Consensus       230 ~~g~iP~~~  238 (286)
                      +  .+|+..
T Consensus       517 ~--~l~~~~  523 (844)
T 3j0a_A          517 T--VLSHND  523 (844)
T ss_dssp             S--SCCCCC
T ss_pred             C--ccChhh
Confidence            4  355443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=2.7e-19  Score=170.47  Aligned_cols=168  Identities=18%  Similarity=0.238  Sum_probs=103.3

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      ++|+.|++++|+|+.+|   ..+++|++|++++|.|+.+|.+..  +|++|+|++|+|+++|.    .+++|+.|++++|
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence            56777777777777777   236677777777777777766443  77777777777777665    4577777777777


Q ss_pred             cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHH---Hhhh
Q 023142           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEA---KKES  175 (286)
Q Consensus        99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~---~~~~  175 (286)
                      .|+.+|.     .+++|+.|+|++|+++.+|.     +.  ++|++|++++|.++.++.    |..    .+.   ..+.
T Consensus       151 ~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~-----l~--~~L~~L~Ls~N~L~~lp~----~~~----~L~~~~~~L~  210 (571)
T 3cvr_A          151 QLTMLPE-----LPTSLEVLSVRNNQLTFLPE-----LP--ESLEALDVSTNLLESLPA----VPV----RNHHSEETEI  210 (571)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CC--TTCCEEECCSSCCSSCCC----CC------------CCE
T ss_pred             ccCcCCC-----cCCCcCEEECCCCCCCCcch-----hh--CCCCEEECcCCCCCchhh----HHH----hhhcccccce
Confidence            7777654     45677888888888777766     12  778888888887664432    111    000   0001


Q ss_pred             cccCCCCCCCCCCh-hhhccCCccCCCCHHHHH-HHHHHHHh
Q 023142          176 MKTLMPVEVPNVSE-EEEQQTPKVVAPTPEQII-AIKAAIVN  215 (286)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~~~~l~~l~ls~n~l~-~ip~~i~~  215 (286)
                      ...+....+..+|. ...+.+|+.+++++|.++ .+|..+..
T Consensus       211 ~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             EEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            11222222223333 245666777777777765 55555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=2.8e-19  Score=169.21  Aligned_cols=179  Identities=17%  Similarity=0.130  Sum_probs=149.3

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|++|++++|.++.++ ..+..+++|++|++++|.++.++  .|..+++|++|++++|+++++++..+..+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            78999999999999774 67888999999999999999875  6899999999999999999998887889999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE  174 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  174 (286)
                      ++|.++.++....++++++|++|++++|. +..++..   .+..+++|++|++++|.+...                   
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~-------------------  163 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIKALSLRNY-------------------  163 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCEE-------------------
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeeccCCccccc-------------------
Confidence            99999975422478999999999999998 6677643   688999999999999974321                   


Q ss_pred             hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHh
Q 023142          175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAI-VNSQTLEEVARLEKVLK  230 (286)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i-~~~~~L~~l~l~~N~l~  230 (286)
                           .+..+      +.+.+|+.++++.|.+..+|..+ ..+++|+.|++++|.+.
T Consensus       164 -----~~~~l------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          164 -----QSQSL------KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             -----CTTTT------TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred             -----Chhhh------hccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence                 11111      23667888888888888888665 56899999999999995

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=3.5e-20  Score=168.41  Aligned_cols=219  Identities=13%  Similarity=0.073  Sum_probs=149.8

Q ss_pred             cCHHHHhC-CCCcCCCCCccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCC----C-C-------CCCCCC
Q 023142            4 LTADLIWK-SPHFFNAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKL----E-N-------MPHLNR   65 (286)
Q Consensus         4 Lt~~~i~~-~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i----~-~-------~~~l~~   65 (286)
                      ++...+.. +..+..+++|+.|+|++|.|+.     ++..+..+++|++|+|++|.+..+    | .       +..+++
T Consensus        16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            34445554 3456678899999999999984     444567899999999999877644    2 2       368999


Q ss_pred             CCeEeccCCcCccc----CCccccCCCCccEEEeecCcCCCCCCCcc----CCCC---------CCccEEEecCCcCCC-
Q 023142           66 LGTLIINNNRITRI----NPNIGEFLPKLHTLVLTNNRLVNLVEIDP----LTSL---------PKLQFLSLLDNSITK-  127 (286)
Q Consensus        66 L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~----l~~l---------~~L~~L~L~~N~l~~-  127 (286)
                      |++|+|++|+++..    .+..+..+++|++|+|++|.|+.... ..    +..+         ++|++|++++|+++. 
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            99999999999972    23345689999999999999874332 12    3333         899999999999973 


Q ss_pred             -CCCchHHHHhhCCCCcEEeCCCCChHHHHH--HHH-HhhcchhHHHHHhhhcccCCCCCC-----CCCChh-hhccCCc
Q 023142          128 -KPNYRLYVIHKLKSLRVLDFKKVKNKERME--AAS-LFASEEMEEEAKKESMKTLMPVEV-----PNVSEE-EEQQTPK  197 (286)
Q Consensus       128 -ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~l~  197 (286)
                       ++. ....+..+++|++|++++|.+.....  ... .+.....      +....+....+     ..++.. ..+++|+
T Consensus       175 ~~~~-l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~------L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          175 SMKE-WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------LKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             GHHH-HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT------CCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             HHHH-HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC------ccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence             331 11267899999999999999874321  111 2222211      11111111111     001111 3567899


Q ss_pred             cCCCCHHHHHH-----HHHHHHh--cCCHHHHHHHHHHHh
Q 023142          198 VVAPTPEQIIA-----IKAAIVN--SQTLEEVARLEKVLK  230 (286)
Q Consensus       198 ~l~ls~n~l~~-----ip~~i~~--~~~L~~l~l~~N~l~  230 (286)
                      .+++++|.++.     ++..+..  +++|+.|++++|.+.
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            99999998863     5777754  899999999998884

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.1e-16  Score=133.01  Aligned_cols=131  Identities=22%  Similarity=0.307  Sum_probs=119.7

Q ss_pred             CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .++|++|++++|+++.++. .+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            5689999999999998874 5678999999999999999886  478999999999999999999988888999999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      +++|.|+.+++ ..|..+++|++|++++|.++.++..   .+..+++|++|++++|.+
T Consensus       107 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          107 LNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCB
T ss_pred             cCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCe
Confidence            99999999987 6789999999999999999988874   578899999999999963

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=8.3e-19  Score=168.82  Aligned_cols=37  Identities=8%  Similarity=0.041  Sum_probs=22.8

Q ss_pred             ccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023142          193 QQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       193 ~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l  229 (286)
                      +.+|+.+++++|+|+.||..+.++++|+.|++++|.+
T Consensus       260 ~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             cccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            3456666666666666666666666666666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=9.4e-17  Score=132.35  Aligned_cols=123  Identities=25%  Similarity=0.296  Sum_probs=108.4

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP   81 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~   81 (286)
                      ++.+.++..+.- -.++|+.|++++|+|+.+|..+..+++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++
T Consensus        17 ~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           17 CSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             CTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             cCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence            344445554431 236899999999999999988999999999999999999886  59999999999999999999999


Q ss_pred             ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC
Q 023142           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK  128 (286)
Q Consensus        82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i  128 (286)
                      ..|..+++|++|+|++|.|+.+++ ..|..+++|+.|++++|++...
T Consensus        96 ~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECS
T ss_pred             HHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecC
Confidence            888999999999999999999987 6799999999999999999753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.70  E-value=9e-19  Score=157.33  Aligned_cols=202  Identities=19%  Similarity=0.239  Sum_probs=143.9

Q ss_pred             CCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCe-EeccCCcCcccCCccccCCCCccE
Q 023142           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGT-LIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      ++++++|+|++|+|+.+| ..|.++++|++|+|++|.+.. +|  .|.+++++.. +.+++|+++.+++..|..+++|++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            467999999999999998 468889999999999999864 55  5788888875 667789999999998999999999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecC-CcCCCCCCchHHHHhhCC-CCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLK-SLRVLDFKKVKNKERMEAASLFASEEMEEE  170 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  170 (286)
                      |++++|+|+.+++ ..+....++..|++.+ +.+..++..   .+..+. .++.|++++|.+++++..  .|....    
T Consensus       109 L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~~--~f~~~~----  178 (350)
T 4ay9_X          109 LLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHNS--AFNGTQ----  178 (350)
T ss_dssp             EEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECTT--SSTTEE----
T ss_pred             ccccccccccCCc-hhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCChh--hccccc----
Confidence            9999999999887 4666677788888865 678877764   445554 588999999987654321  122211    


Q ss_pred             HHhhhcccCC-CCCCCCCChh--hhccCCccCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142          171 AKKESMKTLM-PVEVPNVSEE--EEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPA  236 (286)
Q Consensus       171 ~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~l~ls~n~l~~ip~-~i~~~~~L~~l~l~~N~l~~g~iP~  236 (286)
                         +....+. ...+..++..  ..+.+|+.+++++|+|+.||. .+.++++|+.++.  +.+  ..+|+
T Consensus       179 ---L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l--~~lP~  241 (350)
T 4ay9_X          179 ---LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL--KKLPT  241 (350)
T ss_dssp             ---EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTC--CCCCC
T ss_pred             ---hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCc--CcCCC
Confidence               0000000 0111122221  367889999999999998884 4566666666543  334  45763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.69  E-value=7.9e-17  Score=154.11  Aligned_cols=149  Identities=22%  Similarity=0.238  Sum_probs=122.5

Q ss_pred             ccCHHHHhC--CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCc
Q 023142            3 RLTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT   77 (286)
Q Consensus         3 ~Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~   77 (286)
                      .|+.+.|+.  +..|.++++|++|+|++|+|+.++ ..|.++++|++|+|++|+|+.+|  .|.++++|++|+|++|+++
T Consensus        58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A           58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence            456666665  346999999999999999999987 57888999999999999999986  5899999999999999999


Q ss_pred             ccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCC-CcEEeCCCCC
Q 023142           78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS-LRVLDFKKVK  151 (286)
Q Consensus        78 ~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~-L~~L~l~~n~  151 (286)
                      .+++..|+++++|++|++++|.|+.++....++.+++|++|++++|+++.++...+..+..++. +..++++.|.
T Consensus       138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            9999888999999999999999987653246888999999999999999876553334444332 2345555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=3.7e-17  Score=160.23  Aligned_cols=182  Identities=16%  Similarity=0.192  Sum_probs=110.3

Q ss_pred             CCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCcc
Q 023142           30 KIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP  108 (286)
Q Consensus        30 ~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~  108 (286)
                      .+...+..+..+..|+.|+|++|.+..+| .+..+++|++|+|++|.|+.+|..+ ..+++|++|+|++|.|+.+|.  .
T Consensus       212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~--~  288 (727)
T 4b8c_D          212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA--E  288 (727)
T ss_dssp             ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCS--S
T ss_pred             ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccCh--h
Confidence            33334566778999999999999999997 6779999999999999999887554 799999999999999999876  7


Q ss_pred             CCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCC
Q 023142          109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVS  188 (286)
Q Consensus       109 l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (286)
                      |+++++|++|+|++|.|+.+|.    .|+.+++|++|++++|.+.......  |.........-.+..+.+....+.   
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~p~~--~~~~~~~~~~l~l~~N~l~~~~p~---  359 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQFLKI--LTEKSVTGLIFYLRDNRPEIPLPH---  359 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSHHHHH--HHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred             hcCCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCCChHH--HhhcchhhhHHhhccCcccCcCcc---
Confidence            9999999999999999999998    6899999999999999987543222  222111111122333444333322   


Q ss_pred             hhhhccCCccCCCCHH--------HHH-HHHHHHHhcCCHHHHHHHHHHH
Q 023142          189 EEEEQQTPKVVAPTPE--------QII-AIKAAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       189 ~~~~~~~l~~l~ls~n--------~l~-~ip~~i~~~~~L~~l~l~~N~l  229 (286)
                            .+..++++.|        .+. .++..+.++..+....+++|.+
T Consensus       360 ------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          360 ------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             ------C-----------------------------------------CC
T ss_pred             ------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence                  4666777766        233 2223445666666677777776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=1.3e-16  Score=147.45  Aligned_cols=132  Identities=24%  Similarity=0.300  Sum_probs=120.7

Q ss_pred             CCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|++++|.++.+ |..+..+++|++|++++|.++.++  .|..+++|++|++++|+++++++..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            6899999999999965 577888999999999999999874  7899999999999999999998888889999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      ++|.|+.+++ ..|.++++|++|++++|+++.+|..   .+..+++|++|++++|++..
T Consensus       355 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          355 SYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBCC
T ss_pred             CCCcccccCh-hhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCCccc
Confidence            9999999876 6899999999999999999998875   57899999999999999753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.69  E-value=8.7e-19  Score=164.97  Aligned_cols=184  Identities=20%  Similarity=0.186  Sum_probs=111.3

Q ss_pred             CCCCCccEEEeeCCCCcccc-ccccCC---CCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142           16 FNAIKERELDLRGNKIAVIE-NLGATE---DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l~-~~~~~l---~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~   91 (286)
                      .++++|+.+++++|.+ .+| ..+..+   .+|+.|++++|.+..++.+..+++|++|++++|++++..+..+..+++|+
T Consensus       273 ~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  351 (520)
T 2z7x_B          273 TSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE  351 (520)
T ss_dssp             CCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred             ccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence            4444455555555544 333 122111   34666666666655544346677777777777777775445556777777


Q ss_pred             EEEeecCcCCCCCCC-ccCCCCCCccEEEecCCcCCC-CCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHH
Q 023142           92 TLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITK-KPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEE  169 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~-~~l~~l~~L~~L~L~~N~l~~-ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  169 (286)
                      +|++++|+|++++.+ ..+..+++|++|++++|.++. +|..   .+..+++|++|++++|.+....     +.      
T Consensus       352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~-----~~------  417 (520)
T 2z7x_B          352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTI-----FR------  417 (520)
T ss_dssp             EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGG-----GG------
T ss_pred             EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCcch-----hh------
Confidence            777777777754321 146677777777777777775 6643   3556677777777777653110     00      


Q ss_pred             HHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023142          170 EAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD  237 (286)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~  237 (286)
                              .+             ..+|+.+++++|+|+.+|..+..+++|++|++++|.++  .+|..
T Consensus       418 --------~l-------------~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~  462 (520)
T 2z7x_B          418 --------CL-------------PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK--SVPDG  462 (520)
T ss_dssp             --------SC-------------CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC--CCCTT
T ss_pred             --------hh-------------cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC--ccCHH
Confidence                    00             02577777777777777777777777777777777773  56665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=1.6e-17  Score=165.43  Aligned_cols=217  Identities=16%  Similarity=0.080  Sum_probs=152.8

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|+.|++++|.++.++ ..+..+++|+.|+|++|.++.++  .|..+++|++|+|++|+++.+.+..|..+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            68999999999999764 77888999999999999999773  6899999999999999999998888899999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH--------------------HH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK--------------------ER  155 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~--------------------~~  155 (286)
                      ++|.|+.+++ ..|.++++|+.|++++|.++.++.        +++|+.|++++|++.                    .+
T Consensus       346 ~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          346 QKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL  416 (844)
T ss_dssp             CSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred             CCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCcccccccccccceeecccCccccC
Confidence            9999999987 689999999999999999987653        455555555555443                    22


Q ss_pred             HHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHH
Q 023142          156 MEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK------AAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip------~~i~~~~~L~~l~l~~N~l  229 (286)
                      .... .+........+ .+..+.+......  .....+.+|+.+++++|.++.++      ..+..+++|++|++++|.+
T Consensus       417 ~~~~-~~~~l~~L~~L-~Ls~N~l~~~~~~--~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  492 (844)
T 3j0a_A          417 DILY-FLLRVPHLQIL-ILNQNRFSSCSGD--QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL  492 (844)
T ss_dssp             TTHH-HHTTCTTCCEE-EEESCCCCCCCSS--SSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred             chhh-hhhcCCcccee-eCCCCcccccccc--cccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence            1110 11111100000 0011111100000  00123568899999999886332      4578889999999999999


Q ss_pred             hcCCCCCCCccCCCCCCCcc
Q 023142          230 KSGQLPADLKIPDYDSGSKD  249 (286)
Q Consensus       230 ~~g~iP~~~~~~~~~~~~~~  249 (286)
                      + +..|..+........++.
T Consensus       493 ~-~~~~~~~~~l~~L~~L~L  511 (844)
T 3j0a_A          493 N-SLPPGVFSHLTALRGLSL  511 (844)
T ss_dssp             T-TCCTTSSSSCCSCSEEEE
T ss_pred             c-ccChhHccchhhhheeEC
Confidence            5 444444554444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=1.9e-16  Score=151.57  Aligned_cols=130  Identities=24%  Similarity=0.296  Sum_probs=90.6

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++|++|++++|.++.++ ..+..+++|++|++++|.++.+ | .|.++++|++|+|++|+++.+++..|.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            56777777777777665 3566677777777777777766 3 4677777777777777777776666667777777777


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      ++|.++.+++ ..++++++|++|++++|.++.  +|.    .++.+++|++|++++|.+.
T Consensus       112 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          112 VETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCSSCCC
T ss_pred             cCCccccccc-cccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccCCcce
Confidence            7777777665 457777777777777777763  455    5677777777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=7.3e-17  Score=154.90  Aligned_cols=142  Identities=27%  Similarity=0.313  Sum_probs=118.5

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      .+..+.|...+.+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.++. 
T Consensus        49 ~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~-  126 (605)
T 1m9s_A           49 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-  126 (605)
T ss_dssp             BCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-
T ss_pred             ECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-
Confidence            4555667777788899999999999999998887 67799999999999999988888999999999999999988743 


Q ss_pred             cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                       +..+++|+.|+|++|.|+.++   .+..+++|+.|+|++|.+..++.     +..+++|+.|++++|.+..+
T Consensus       127 -l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          127 -LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             -GGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBC
T ss_pred             -ccCCCccCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCCCCCC
Confidence             468889999999999888873   57788888888888888887754     67888888888888887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=3e-16  Score=152.26  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=109.2

Q ss_pred             CCCcCCCCCccEEEeeCCCCc---cccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC-----
Q 023142           12 SPHFFNAIKERELDLRGNKIA---VIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP-----   81 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~-----   81 (286)
                      +..|..+++|+.|++++|.++   .+|..+..+++|++|++++|.++.++  .|..+++|++|++++|+++.++.     
T Consensus       447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  526 (680)
T 1ziw_A          447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG  526 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred             hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence            445777888888888888775   45667777888888888888888775  47888888888888888887633     


Q ss_pred             ---ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142           82 ---NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM  156 (286)
Q Consensus        82 ---~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~  156 (286)
                         ..+.++++|++|++++|.|+.++. ..|.++++|+.|++++|+++.+|..   .+..+++|+.|++++|.++.++
T Consensus       527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          527 GPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPAS---VFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             SCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCCCBCC
T ss_pred             CcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCCcCCHh---HhCCCCCCCEEECCCCcCCccC
Confidence               235677888888888888888876 5688888888888888888888765   5677888888888888776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=2.4e-17  Score=145.43  Aligned_cols=177  Identities=10%  Similarity=0.056  Sum_probs=128.4

Q ss_pred             CCCCCccEEEeeCCCCccc-c----ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc---cCC-ccc
Q 023142           16 FNAIKERELDLRGNKIAVI-E----NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR---INP-NIG   84 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l-~----~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~---l~~-~~~   84 (286)
                      ..+++|++|++++|.++.. +    ..+..+++|++|+|++|.+..++  .|..+++|++|+|++|++.+   ++. ..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            7788899999999988842 2    22345888999999999998774  67888999999999998765   332 223


Q ss_pred             cCCCCccEEEeecCcCCCCCCCc--cCCCCCCccEEEecCCcCCCC-CCchHHHHhhC---CCCcEEeCCCCChHHHHHH
Q 023142           85 EFLPKLHTLVLTNNRLVNLVEID--PLTSLPKLQFLSLLDNSITKK-PNYRLYVIHKL---KSLRVLDFKKVKNKERMEA  158 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~~~--~l~~l~~L~~L~L~~N~l~~i-p~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~  158 (286)
                      ..+++|++|++++|+|+.++...  .++.+++|++|++++|.++.+ |.    .+..+   ++|++|++++|.+..++  
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~~L~~L~Ls~N~l~~lp--  267 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP----SAPRCMWSSALNSLNLSFAGLEQVP--  267 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS----CCSSCCCCTTCCCEECCSSCCCSCC--
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh----hHHhccCcCcCCEEECCCCCCCchh--
Confidence            57888999999999887665410  246778899999999998876 54    34444   68999999988754221  


Q ss_pred             HHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          159 ASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                             ..+        ..+|+.+++++|+|+.+|. +..+++|++|++++|.++
T Consensus       268 -----------------------~~~--------~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          268 -----------------------KGL--------PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             -----------------------SCC--------CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             -----------------------hhh--------cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence                                   000        1367788888888887654 577788888888888774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.67  E-value=3.2e-18  Score=164.76  Aligned_cols=88  Identities=20%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142            5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus         5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      +.+.|+..+.  .+++|++|++++|+|+.+|.   .+++|++|++++|.++.+|.  .+++|+.|++++|+|+.+|..  
T Consensus        69 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~--  139 (622)
T 3g06_A           69 PDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL--  139 (622)
T ss_dssp             CSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--
T ss_pred             cCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--
Confidence            3344444333  45667777777777776665   35666666666666666554  344555555555555544331  


Q ss_pred             cCCCCccEEEeecCcCCCC
Q 023142           85 EFLPKLHTLVLTNNRLVNL  103 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~  103 (286)
                        +++|++|++++|.|+.+
T Consensus       140 --l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          140 --PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             --CTTCCEEECCSSCCSCC
T ss_pred             --CCCCCEEECcCCcCCCc
Confidence              24444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2e-16  Score=150.91  Aligned_cols=124  Identities=27%  Similarity=0.333  Sum_probs=98.9

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      .|+.|++++|.|+.+|. +..+++|+.|+|++|.|+.+| .|+.+++|+.|+|++|+|+++|  .+..+++|+.|+|++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCC
Confidence            47788888888888887 777888888888888888887 6788888888888888888876  4567888888888888


Q ss_pred             cCCCCC-CCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeC
Q 023142           99 RLVNLV-EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF  147 (286)
Q Consensus        99 ~i~~~~-~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l  147 (286)
                      .|++++ + ..++.+++|+.|+|++|+++.+|......+..+++|+.|++
T Consensus       519 ~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888874 3 47888888888888888888777655446667888888864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=4.1e-16  Score=128.28  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=106.2

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccc--cccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCccc
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRI   79 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l   79 (286)
                      ++.+.++..+.-. ..+|+.|++++|+|+.++.  .+..+++|++|+|++|.|+.+ | .|..+++|++|+|++|+|+++
T Consensus        15 ~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~   93 (192)
T 1w8a_A           15 CTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             CTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             cCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc
Confidence            3444455544311 2489999999999998885  478899999999999999988 4 799999999999999999999


Q ss_pred             CCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC
Q 023142           80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK  128 (286)
Q Consensus        80 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i  128 (286)
                      ++..|..+++|++|++++|+|+++++ ..|..+++|++|++++|++...
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           94 SNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCS
T ss_pred             CHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCc
Confidence            99888899999999999999999876 6899999999999999999843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=5.8e-16  Score=146.86  Aligned_cols=131  Identities=27%  Similarity=0.316  Sum_probs=105.5

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++++.|++++|+++.++ ..+..+++|++|++++|.++.++  .|..+++|++|++++|+++.+++..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            56888888888888775 46777888888888888888774  5788888888888888888888777788888888888


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      ++|.++.+++ ..++++++|++|++++|.++.  +|.    .++.+++|++|++++|.+..
T Consensus       108 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTSCCCE
T ss_pred             cccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCCccce
Confidence            8888888876 468888888888888888875  455    67888888888888887643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=8.6e-16  Score=124.38  Aligned_cols=111  Identities=23%  Similarity=0.310  Sum_probs=101.2

Q ss_pred             CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .++|+.|++++|+++.++. .+..+++|++|++++|.++.++  .|..+++|++|++++|+|+.+++..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            4789999999999998874 5678999999999999999886  378999999999999999999998888999999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCC
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP  129 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip  129 (286)
                      +++|.|+.+++ ..+..+++|++|++++|++....
T Consensus       107 l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          107 LDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence            99999999987 67889999999999999998543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=6.5e-16  Score=146.08  Aligned_cols=137  Identities=19%  Similarity=0.260  Sum_probs=104.7

Q ss_pred             CCCcCCCCCccEEEeeCCCCcccc---ccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccc---
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIG---   84 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~---   84 (286)
                      +..+..+++|+.|++++|+++.++   ..+..+++|++|++++|+++.+| .+..+++|++|++++|+++.++....   
T Consensus       354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L  433 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL  433 (549)
T ss_dssp             HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTC
T ss_pred             hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCc
Confidence            334667778888888888887765   34666888888888888888776 56777777777777777776654321   


Q ss_pred             --------------cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142           85 --------------EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        85 --------------~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                                    ..+++|++|++++|+|+.+|.   ...+++|++|++++|+++.++..   .+..+++|+.|++++|
T Consensus       434 ~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVPDG---IFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCCTT---GGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcCHH---HHhcCcccCEEEecCC
Confidence                          257788888888888888775   45688899999999999987664   5789999999999999


Q ss_pred             ChHH
Q 023142          151 KNKE  154 (286)
Q Consensus       151 ~~~~  154 (286)
                      ++..
T Consensus       508 ~~~~  511 (549)
T 2z81_A          508 PWDC  511 (549)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            8643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=3e-16  Score=147.63  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=111.8

Q ss_pred             cCHHHHhC--CCCcCCCCCccEEEeeCCCCccc---cccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCeEeccCCc
Q 023142            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVI---ENLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINNNR   75 (286)
Q Consensus         4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l---~~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~Ls~N~   75 (286)
                      ++.+.+..  +..+.++++|+.|++++|+++.+   |..+..+++|++|++++|.++. +|  .+..+++|+.|++++|+
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            33444444  56677788888888888888743   4556778888888888888886 65  47778888888888888


Q ss_pred             CcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        76 l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      +++..+..+  .++|++|++++|+|+.+|.  .+..+++|++|++++|+++.+|..   .+..+++|++|++++|++...
T Consensus       411 l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          411 LTDTIFRCL--PPRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCGGGGGSC--CTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcchhhhh--cccCCEEECCCCcccccch--hhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECcCCCCccc
Confidence            865433222  1689999999999998886  566899999999999999999874   478899999999999997543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=1.6e-15  Score=122.39  Aligned_cols=108  Identities=25%  Similarity=0.331  Sum_probs=88.7

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      ..+.+++++|.++.+|..+  .++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3578888888888888655  378888888888888873  578888888888888888888888878888888888888


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      |+|+.+++ ..|..+++|++|+|++|++...+.
T Consensus        88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence            88888876 568888888888888888875543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=2.2e-15  Score=122.08  Aligned_cols=107  Identities=23%  Similarity=0.304  Sum_probs=88.1

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      -+.+++++|.++.+|..+.  ++|++|+|++|.|+.++  .|..+++|++|+|++|+|+.+++..|..+++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3678888888888886553  78888888888888773  5788888888888888888888887778888888888888


Q ss_pred             cCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      +|+.+++ ..|..+++|++|+|++|++...+.
T Consensus        92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            8888876 568888888888888888886654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.63  E-value=5.4e-16  Score=147.08  Aligned_cols=148  Identities=21%  Similarity=0.214  Sum_probs=123.5

Q ss_pred             cCHHHHhC--CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR   78 (286)
Q Consensus         4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~   78 (286)
                      |+.+.++.  +..|.++++|++|++++|+++.++ ..+..+++|++|+|++|.++.++  .|.++++|++|++++|+++.
T Consensus        35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  114 (570)
T 2z63_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS  114 (570)
T ss_dssp             CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred             ccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc
Confidence            44444543  447899999999999999999886 67888999999999999999875  68999999999999999999


Q ss_pred             cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC----cEEeCCCCChHH
Q 023142           79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL----RVLDFKKVKNKE  154 (286)
Q Consensus        79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L----~~L~l~~n~~~~  154 (286)
                      +++..+..+++|++|++++|.++.+.-...|+++++|++|++++|.++.++..   .++.+++|    ..|++++|.+..
T Consensus       115 l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~~~~~L~l~~n~l~~  191 (570)
T 2z63_A          115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMPLLNLSLDLSLNPMNF  191 (570)
T ss_dssp             STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCTTCCCEEECTTCCCCE
T ss_pred             CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---HccchhccchhhhhcccCCCCcee
Confidence            98867889999999999999999743114799999999999999999987654   45555555    778888887543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.63  E-value=1e-15  Score=145.51  Aligned_cols=135  Identities=21%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             CCCcCCCCCccEEEeeCCCCcccc---ccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCeEeccCCcCcccCCcccc
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINNNRITRINPNIGE   85 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~   85 (286)
                      +..+.++++|+.|++++|+++.++   ..+..+++|++|++++|.++. +|  .+..+++|+.|++++|++++..+   .
T Consensus       370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~  446 (562)
T 3a79_B          370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---R  446 (562)
T ss_dssp             TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---S
T ss_pred             hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---h
Confidence            455666677777777777776543   345566777777777777765 54  36667777777777777654322   2


Q ss_pred             CC-CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           86 FL-PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        86 ~l-~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      .+ ++|++|++++|+|+.+|.  .+..+++|++|++++|+++.+|..   .+..+++|+.|++++|++..
T Consensus       447 ~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          447 CLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             SCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECCSCCBCC
T ss_pred             hhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEecCCCcCC
Confidence            33 588999999999998886  455899999999999999999884   47899999999999998753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=1.7e-17  Score=149.03  Aligned_cols=210  Identities=13%  Similarity=0.139  Sum_probs=152.4

Q ss_pred             cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCc-ccCCccccCCCCcc
Q 023142           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLH   91 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~   91 (286)
                      +..|.. +.++.++++++.||..+  .+++++|+|++|+|+.+|  .|.++++|++|+|++|++. .+++..|.+++++.
T Consensus         6 ~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X            6 ICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             SSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             ccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            444433 67899999999999765  468999999999999997  5899999999999999985 47778888998876


Q ss_pred             E-EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC-ChHHHHHHHHHhhcchhHH
Q 023142           92 T-LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV-KNKERMEAASLFASEEMEE  169 (286)
Q Consensus        92 ~-L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~  169 (286)
                      . +.+++|+|+.+++ ..|.++++|++|++++|++..++..   .+....++..|++.++ .+..++.  ..|.+.... 
T Consensus        83 ~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~-  155 (350)
T 4ay9_X           83 EIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFE-  155 (350)
T ss_dssp             EEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC---TTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSS-
T ss_pred             hhhcccCCcccccCc-hhhhhccccccccccccccccCCch---hhcccchhhhhhhccccccccccc--cchhhcchh-
Confidence            5 6777899999987 7899999999999999999998875   4556677888888664 4432211  012221100 


Q ss_pred             HHHhhhcccCCCCCCCCCChh-hhccCCccCCCCH-HHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCCcc
Q 023142          170 EAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTP-EQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKI  240 (286)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~-n~l~~ip~-~i~~~~~L~~l~l~~N~l~~g~iP~~~~~  240 (286)
                          +.........+..++.. ....++..+.+.+ |.++.||. ++..+++|++|++++|.+  ..||.....
T Consensus       156 ----l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~~~~  223 (350)
T 4ay9_X          156 ----SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLE  223 (350)
T ss_dssp             ----CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSSSCT
T ss_pred             ----hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChhhhc
Confidence                00011111111111111 2356788888874 78889985 679999999999999999  468876544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.7e-16  Score=155.59  Aligned_cols=185  Identities=17%  Similarity=0.109  Sum_probs=117.1

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCE-----EeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDT-----IDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~-----L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      +.++.|+|.+|.+..++........|..     ++++.|.+...+ .|..++.|+.|+|++|.+..++..++ .+++|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCE
Confidence            5678899999998876644322222222     333444444333 58899999999999999999988887 8999999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK  172 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  172 (286)
                      |+|++|.|+.+|.  .|+++++|++|+|++|.|+.+|.    .++.+++|++|++++|.+..+                 
T Consensus       252 L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~l-----------------  308 (727)
T 4b8c_D          252 LYLNGNSLTELPA--EIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMVTTL-----------------  308 (727)
T ss_dssp             CBCTTSCCSCCCG--GGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCCCCC-----------------
T ss_pred             EEeeCCcCcccCh--hhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCCCcc-----------------
Confidence            9999999998876  78999999999999999999998    689999999999999975421                 


Q ss_pred             hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCCccCC
Q 023142          173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQ-TLEEVARLEKVLKSGQLPADLKIPD  242 (286)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~-~L~~l~l~~N~l~~g~iP~~~~~~~  242 (286)
                              |..+      +.+.+|+.|+|++|.|+ .+|..+..+. .+..+++.+|.+. |.+|..+....
T Consensus       309 --------p~~~------~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~-~~~p~~l~~l~  365 (727)
T 4b8c_D          309 --------PWEF------GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE-IPLPHERRFIE  365 (727)
T ss_dssp             --------CSST------TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC-----
T ss_pred             --------Chhh------hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc-CcCccccceeE
Confidence                    1111      24778999999999999 7777776653 3345789999994 89998776554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=1.4e-18  Score=143.67  Aligned_cols=130  Identities=21%  Similarity=0.273  Sum_probs=91.6

Q ss_pred             CccEEEeeCC--CCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           20 KERELDLRGN--KIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        20 ~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      .|+.+.+++.  .++.+|..+..+++|++|++++|.++.+|.+..+++|++|++++|+++.+|. .+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcC
Confidence            3444455443  4455555677778888888888888777777777888888888888887754 334567788888888


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      |.|++++   .+..+++|++|++++|+++.++..  ..+..+++|++|++++|.+...
T Consensus       103 N~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          103 NQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHHHH
T ss_pred             CcCCcCC---ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccccc
Confidence            8887764   366777788888888887765431  1567778888888888877554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=7.4e-16  Score=124.79  Aligned_cols=142  Identities=20%  Similarity=0.202  Sum_probs=114.6

Q ss_pred             ccCCCCcCEEeccCCCCCCCCCCCCCC-CCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCcc
Q 023142           38 GATEDQFDTIDLSDNEIVKLENMPHLN-RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ  116 (286)
Q Consensus        38 ~~~l~~L~~L~Ls~N~l~~i~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~  116 (286)
                      +..+.+|++|++++|.++.++.+..+. +|++|++++|+|+++  ..+..+++|++|++++|.|+.+++ ..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCCCCC
Confidence            445889999999999999998777666 999999999999998  345789999999999999999886 4568999999


Q ss_pred             EEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCC
Q 023142          117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTP  196 (286)
Q Consensus       117 ~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (286)
                      +|++++|.+..+|...  .+..+++|++|++++|.+...+....        ...                   ..+++|
T Consensus        92 ~L~L~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~i~~~~~~~~--------~~~-------------------~~l~~L  142 (176)
T 1a9n_A           92 ELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTNKKHYRL--------YVI-------------------YKVPQV  142 (176)
T ss_dssp             EEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGGSTTHHH--------HHH-------------------HHCTTC
T ss_pred             EEECCCCcCCcchhhH--hhhcCCCCCEEEecCCCCCCcHhHHH--------HHH-------------------HHCCcc
Confidence            9999999999887621  47899999999999998764321100        001                   135678


Q ss_pred             ccCCCCHHHHHHHHH
Q 023142          197 KVVAPTPEQIIAIKA  211 (286)
Q Consensus       197 ~~l~ls~n~l~~ip~  211 (286)
                      +.++++.|.+.....
T Consensus       143 ~~Ld~~~n~~~~~~~  157 (176)
T 1a9n_A          143 RVLDFQKVKLKERQE  157 (176)
T ss_dssp             SEETTEECCHHHHHH
T ss_pred             ceeCCCcCCHHHHHH
Confidence            899999888875543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=5e-15  Score=141.05  Aligned_cols=118  Identities=20%  Similarity=0.280  Sum_probs=83.1

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR   99 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~   99 (286)
                      +|+.|++++|.|+.+|.   .+++|++|++++|.|+.+|.  .+++|+.|+|++|+|+++|.  +.  ++|+.|+|++|.
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL  191 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence            45555555555555554   35566666666666666654  45677777777777777765  33  778888888888


Q ss_pred             CCCCCCCccCCCCCCc-------cEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142          100 LVNLVEIDPLTSLPKL-------QFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus       100 i~~~~~~~~l~~l~~L-------~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      |+.+|.   +..  +|       +.|+|++|+|+.+|.    .+..+++|+.|++++|++...
T Consensus       192 L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          192 LESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CSSCCC---CC----------CCEEEECCSSCCCCCCG----GGGGSCTTEEEECCSSSCCHH
T ss_pred             CCchhh---HHH--hhhcccccceEEecCCCcceecCH----HHhcCCCCCEEEeeCCcCCCc
Confidence            887765   332  56       999999999999988    577799999999999998654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=7.7e-15  Score=118.33  Aligned_cols=105  Identities=27%  Similarity=0.325  Sum_probs=95.9

Q ss_pred             CcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEec
Q 023142           43 QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL  121 (286)
Q Consensus        43 ~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~  121 (286)
                      ..+.+++++|.++.+| .+  .++|++|+|++|+|+++++..|..+++|++|+|++|+|+.+++ ..|.++++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECC
Confidence            3578999999999998 44  3899999999999999998888999999999999999999997 678999999999999


Q ss_pred             CCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142          122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus       122 ~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      +|+|+.++..   .+..+++|++|++++|++.
T Consensus        87 ~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRG---AFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHH---HhcCCCCCCEEEeCCCCCC
Confidence            9999999874   5889999999999999864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=7.1e-16  Score=123.70  Aligned_cols=126  Identities=21%  Similarity=0.223  Sum_probs=106.5

Q ss_pred             cCHHHHh--C-CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC-CCC-CCCCCCCCeEeccCCcCcc
Q 023142            4 LTADLIW--K-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK-LEN-MPHLNRLGTLIINNNRITR   78 (286)
Q Consensus         4 Lt~~~i~--~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~l~~L~~L~Ls~N~l~~   78 (286)
                      ++.+.+.  . |..+..+++|++|++++|.|+.+ ..+..+++|++|++++|.++. +|. +..+++|++|++++|+|++
T Consensus        31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            3444454  3 44467889999999999999988 677789999999999999998 664 4569999999999999999


Q ss_pred             cCC-ccccCCCCccEEEeecCcCCCCCCC--ccCCCCCCccEEEecCCcCCCCCC
Q 023142           79 INP-NIGEFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        79 l~~-~~~~~l~~L~~L~Ls~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      ++. ..+..+++|++|++++|.|+.+++.  ..+..+++|++|++++|.+..+|.
T Consensus       110 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          110 ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            864 5667999999999999999998741  258899999999999999998876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1e-14  Score=118.12  Aligned_cols=104  Identities=23%  Similarity=0.356  Sum_probs=95.4

Q ss_pred             cCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecC
Q 023142           44 FDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD  122 (286)
Q Consensus        44 L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~  122 (286)
                      -+.+++++|.++.+| .+.  ++|+.|+|++|+|+++++..|..+++|++|+|++|+|+.+++ ..|.++++|++|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence            478999999999998 454  899999999999999998888999999999999999999987 6789999999999999


Q ss_pred             CcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142          123 NSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus       123 N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      |+|+.++..   .+..+++|++|++++|++.
T Consensus        91 N~l~~l~~~---~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRG---AFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTT---TTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHH---HhccccCCCEEEeCCCCcc
Confidence            999999874   5889999999999999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.58  E-value=4.5e-17  Score=146.82  Aligned_cols=206  Identities=13%  Similarity=0.087  Sum_probs=126.2

Q ss_pred             CCCccEEEeeCCCCcccc-----ccccCCC-CcCEEeccCCCCCCCC--CCCCC-----CCCCeEeccCCcCcccCCcc-
Q 023142           18 AIKERELDLRGNKIAVIE-----NLGATED-QFDTIDLSDNEIVKLE--NMPHL-----NRLGTLIINNNRITRINPNI-   83 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~-----~~~~~l~-~L~~L~Ls~N~l~~i~--~~~~l-----~~L~~L~Ls~N~l~~l~~~~-   83 (286)
                      .++|++|++++|.|+.++     ..+..++ +|++|+|++|.++...  .+..+     ++|++|+|++|+++..++.. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            345889999999888665     4556677 8889999998888653  34332     88888999998888766542 


Q ss_pred             ---ccCC-CCccEEEeecCcCCCCCCCcc----CCC-CCCccEEEecCCcCCCCCCchH-HHHhhCC-CCcEEeCCCCCh
Q 023142           84 ---GEFL-PKLHTLVLTNNRLVNLVEIDP----LTS-LPKLQFLSLLDNSITKKPNYRL-YVIHKLK-SLRVLDFKKVKN  152 (286)
Q Consensus        84 ---~~~l-~~L~~L~Ls~N~i~~~~~~~~----l~~-l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~-~L~~L~l~~n~~  152 (286)
                         +..+ ++|++|++++|.|+..+. ..    +.. .++|++|++++|.++......+ ..+..++ +|++|++++|.+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence               3344 788888888888877654 23    333 3588888888888875432211 1455565 888888888887


Q ss_pred             HHHHHHH--HHhhcchhHHHHHhhhcccCCCCCCCC-----CChh-hh-ccCCccCCCCHHHHHH-----HHHHHHhcCC
Q 023142          153 KERMEAA--SLFASEEMEEEAKKESMKTLMPVEVPN-----VSEE-EE-QQTPKVVAPTPEQIIA-----IKAAIVNSQT  218 (286)
Q Consensus       153 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~-~~~l~~l~ls~n~l~~-----ip~~i~~~~~  218 (286)
                      .......  ..+....     ..+....+....+.+     ++.. .. ..+|+.+++++|.++.     +...+..+++
T Consensus       180 ~~~~~~~l~~~l~~~~-----~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          180 ASKNCAELAKFLASIP-----ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             GGSCHHHHHHHHHTSC-----TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred             chhhHHHHHHHHHhCC-----CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence            5432111  0111100     001111111111110     1111 11 2368888888888753     3344466788


Q ss_pred             HHHHHHHHHHH
Q 023142          219 LEEVARLEKVL  229 (286)
Q Consensus       219 L~~l~l~~N~l  229 (286)
                      |++|++++|.+
T Consensus       255 L~~L~L~~n~l  265 (362)
T 3goz_A          255 LQTVYLDYDIV  265 (362)
T ss_dssp             CSEEEEEHHHH
T ss_pred             ccEEEeccCCc
Confidence            88888888885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.57  E-value=6.4e-18  Score=152.39  Aligned_cols=209  Identities=18%  Similarity=0.110  Sum_probs=142.9

Q ss_pred             CcCCCC-CccEEEeeCCCCccc-cccccCC-----CCcCEEeccCCCCCCCC--C----CCCC-CCCCeEeccCCcCccc
Q 023142           14 HFFNAI-KERELDLRGNKIAVI-ENLGATE-----DQFDTIDLSDNEIVKLE--N----MPHL-NRLGTLIINNNRITRI   79 (286)
Q Consensus        14 ~~~~l~-~L~~L~Ls~n~l~~l-~~~~~~l-----~~L~~L~Ls~N~l~~i~--~----~~~l-~~L~~L~Ls~N~l~~l   79 (286)
                      .+.+++ +|++|++++|.|+.. +..+..+     ++|++|+|++|.++..+  .    +..+ ++|++|++++|+++..
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            456777 899999999999865 3444433     89999999999998664  1    4455 8999999999999988


Q ss_pred             CCccc----cC-CCCccEEEeecCcCCCCCC---CccCCCCC-CccEEEecCCcCCCCCCchHH-HHhhC-CCCcEEeCC
Q 023142           80 NPNIG----EF-LPKLHTLVLTNNRLVNLVE---IDPLTSLP-KLQFLSLLDNSITKKPNYRLY-VIHKL-KSLRVLDFK  148 (286)
Q Consensus        80 ~~~~~----~~-l~~L~~L~Ls~N~i~~~~~---~~~l~~l~-~L~~L~L~~N~l~~ip~~~~~-~l~~l-~~L~~L~l~  148 (286)
                      +...+    .. .++|++|++++|.|+....   ...+..++ +|++|++++|+++......+. .+..+ ++|++|+++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            76432    33 3699999999999985432   01234555 899999999999876543222 45566 599999999


Q ss_pred             CCChHH-----HHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCCh-----h-hhccCCccCCCCHHH--------HHHH
Q 023142          149 KVKNKE-----RMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSE-----E-EEQQTPKVVAPTPEQ--------IIAI  209 (286)
Q Consensus       149 ~n~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l~~l~ls~n~--------l~~i  209 (286)
                      +|.+..     ++.+.....        ..+....+....+...+.     . ..+.+|+.++++.|.        +..+
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~--------~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIP--------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSC--------TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCCChhHHHHHHHHHhcCC--------CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            999876     221111100        011111111112221111     0 345789999999998        5566


Q ss_pred             HHHHHhcCCHHHHHHHHHHHh
Q 023142          210 KAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       210 p~~i~~~~~L~~l~l~~N~l~  230 (286)
                      +..+.++++|++|++++|.+.
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHhccCCceEEEecCCCcCC
Confidence            667788899999999888874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.57  E-value=2.2e-14  Score=133.29  Aligned_cols=116  Identities=22%  Similarity=0.324  Sum_probs=75.2

Q ss_pred             CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142            5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus         5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      +.+.++..+.|.++++|++|++++|+++.+|...   .+|++|++++|.++.+|.+..+++|++|++++|+++++|..  
T Consensus       139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~--  213 (454)
T 1jl5_A          139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL--  213 (454)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred             cCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC--
Confidence            3344444446777777777777777777666543   46777777777777777777777777777777777765432  


Q ss_pred             cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           85 EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                        .++|++|++++|.++.+|.   ++.+++|++|++++|+++.+|.
T Consensus       214 --~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          214 --PLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             --CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCS
T ss_pred             --cCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCcccc
Confidence              2356666666666665543   5566666777776666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=1.8e-14  Score=137.37  Aligned_cols=118  Identities=22%  Similarity=0.241  Sum_probs=103.7

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC-C
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN-P   81 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~-~   81 (286)
                      .|+.+.|+..+.+.++++|+.|+|++|.|+.+|..++.+++|++|+|++|.|+.+|.++.+++|+.|+|++|+|++++ +
T Consensus       447 ~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p  526 (567)
T 1dce_A          447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI  526 (567)
T ss_dssp             ECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             EecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc
Confidence            456667777777999999999999999999999999999999999999999999999999999999999999999996 6


Q ss_pred             ccccCCCCccEEEeecCcCCCCCCCc--cCCCCCCccEEEe
Q 023142           82 NIGEFLPKLHTLVLTNNRLVNLVEID--PLTSLPKLQFLSL  120 (286)
Q Consensus        82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~--~l~~l~~L~~L~L  120 (286)
                      ..+..+++|+.|++++|.|+++++..  .+..+++|+.|++
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            66789999999999999999987611  1234889999864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.5e-14  Score=113.64  Aligned_cols=108  Identities=26%  Similarity=0.269  Sum_probs=94.6

Q ss_pred             CCCcCEEeccCCCCC--CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccE
Q 023142           41 EDQFDTIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF  117 (286)
Q Consensus        41 l~~L~~L~Ls~N~l~--~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~  117 (286)
                      .++|+.|++++|.++  .+| .+..+++|++|++++|+++.+  ..+..+++|++|++++|.|++..+ ..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCCE
Confidence            578999999999999  777 578999999999999999998  446789999999999999998433 36777999999


Q ss_pred             EEecCCcCCCCC--CchHHHHhhCCCCcEEeCCCCChHHH
Q 023142          118 LSLLDNSITKKP--NYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus       118 L~L~~N~l~~ip--~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      |++++|+++.++  .    .+..+++|++|++++|.+...
T Consensus        93 L~ls~N~i~~~~~~~----~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           93 LNLSGNKIKDLSTIE----PLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             EECTTSCCCSHHHHG----GGGGCTTCCEEECTTCGGGGS
T ss_pred             EECCCCcCCChHHHH----HHhhCCCCCEEeCcCCcccch
Confidence            999999999865  4    689999999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=1.2e-16  Score=142.01  Aligned_cols=126  Identities=16%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC--CC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ++++.|++++|.++..+..+..+++|++|++++|.++.  ++ .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            34555555555555443333345555555555555542  32 3445555555555555555433333344555555555


Q ss_pred             ecC-cCCC--CCCCccCCCCCCccEEEecCC-cCCC--CCCchHHHHhhCC-CCcEEeCCCC
Q 023142           96 TNN-RLVN--LVEIDPLTSLPKLQFLSLLDN-SITK--KPNYRLYVIHKLK-SLRVLDFKKV  150 (286)
Q Consensus        96 s~N-~i~~--~~~~~~l~~l~~L~~L~L~~N-~l~~--ip~~~~~~l~~l~-~L~~L~l~~n  150 (286)
                      ++| .++.  ++.  .+.++++|++|++++| .++.  ++.    .+..++ +|++|++++|
T Consensus       150 ~~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          150 SGCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKHVQV----AVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHHHHH----HHHHSCTTCCEEECCSC
T ss_pred             CCCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHHHHH----HHHhcccCCCEEEeCCC
Confidence            555 3442  221  3445555555555555 5542  222    445555 5555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=5.8e-16  Score=137.46  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=105.8

Q ss_pred             CccEEEeeCCCCccccccccCC--CCcCEEeccCCCCCCC-CCCCCCCCCCeEeccCCcCccc-CCccccCCCCccEEEe
Q 023142           20 KERELDLRGNKIAVIENLGATE--DQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRI-NPNIGEFLPKLHTLVL   95 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l--~~L~~L~Ls~N~l~~i-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L   95 (286)
                      .++.++++++.+.  +..+..+  +.++.|++++|.+... +.+..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            4789999999887  4444445  8999999999999976 4678899999999999998863 3455678999999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCC-cCCC--CCCchHHHHhhCCCCcEEeCCCC-ChHH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITK--KPNYRLYVIHKLKSLRVLDFKKV-KNKE  154 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~--ip~~~~~~l~~l~~L~~L~l~~n-~~~~  154 (286)
                      ++|.++.... ..++.+++|++|++++| .++.  ++.    .+..+++|++|++++| .+..
T Consensus       126 ~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          126 EGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             TTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCCTTCCH
T ss_pred             cCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCCCCEEcCCCCCCcCh
Confidence            9999885433 46888999999999999 6763  444    6889999999999999 7764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=1e-15  Score=136.08  Aligned_cols=128  Identities=14%  Similarity=0.151  Sum_probs=90.0

Q ss_pred             CCCccEEEeeCCCCc--------------------ccc-ccccC--------CCCcCEEeccCCCCCCCC--CCCCCCCC
Q 023142           18 AIKERELDLRGNKIA--------------------VIE-NLGAT--------EDQFDTIDLSDNEIVKLE--NMPHLNRL   66 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~--------------------~l~-~~~~~--------l~~L~~L~Ls~N~l~~i~--~~~~l~~L   66 (286)
                      +++|+.|+|++|+|.                    .+| ..|.+        +++|+.|+|.+ .++.|+  .|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            678999999999988                    344 45566        88999999988 888885  68899999


Q ss_pred             CeEeccCCcCcccCCccccCCCCccEEEeecCc----CCCCCCCccC---------------------------------
Q 023142           67 GTLIINNNRITRINPNIGEFLPKLHTLVLTNNR----LVNLVEIDPL---------------------------------  109 (286)
Q Consensus        67 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~l---------------------------------  109 (286)
                      +.+++++|.+..+++..|.++.++..+.+..+.    ...+.. ..|                                 
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            999999998888887777776666655544421    111111 011                                 


Q ss_pred             -----------------CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142          110 -----------------TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus       110 -----------------~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                                       ..|++|+.+++++|.++.|+.+   +|..|.+|+.+++..|
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc
Confidence                             0266777777777777777766   6777777777777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=3.8e-16  Score=128.89  Aligned_cols=135  Identities=30%  Similarity=0.372  Sum_probs=114.8

Q ss_pred             CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC-CCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      .+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +..+++|++|++++|++++++ . +..+++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~-~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G-IEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H-HHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c-cccCCCCCE
Confidence            5778899999999999999998 77789999999999999999884 566799999999999999986 3 568899999


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC-------CCchHHHHhhCCCCcEEeCCCCC
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK-------PNYRLYVIHKLKSLRVLDFKKVK  151 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i-------p~~~~~~l~~l~~L~~L~l~~n~  151 (286)
                      |++++|.|+.++.+..+..+++|++|++++|++...       ..++...+..+++|+.||.....
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence            999999999876534688999999999999999754       23344468999999999844333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=1.8e-13  Score=122.15  Aligned_cols=106  Identities=21%  Similarity=0.288  Sum_probs=91.4

Q ss_pred             cEEEeeCC-CCccccccccCCCCcCEEeccC-CCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           22 RELDLRGN-KIAVIENLGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        22 ~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      ..++++++ +|+.+|. +..+++|++|+|++ |.|+.++  .|..+++|+.|+|++|+|+++++..|..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35688888 8999999 88888999999996 9999886  588999999999999999999988888999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      |+|+.+++ ..|..++ |+.|+|.+|++.....
T Consensus        90 N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSW-KTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence            99999887 5666665 9999999999886543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.45  E-value=7.1e-16  Score=142.60  Aligned_cols=189  Identities=15%  Similarity=0.151  Sum_probs=105.5

Q ss_pred             cCCCCCccEEEeeCCCCcccc-ccc-----cCCCCcCEEeccCCCCCCC-----C-CCCCCCCCCeEeccCCcCcccC--
Q 023142           15 FFNAIKERELDLRGNKIAVIE-NLG-----ATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN--   80 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~-~~~-----~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~Ls~N~l~~l~--   80 (286)
                      +..+++|+.|++++|.++... ..+     ...++|++|++++|.++..     + .+..+++|+.|++++|+++...  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            445667777777777776321 111     1245677777777776652     2 3455667777777777665532  


Q ss_pred             ---CccccCCCCccEEEeecCcCCC-----CCCCccCCCCCCccEEEecCCcCCCCCCc---------------------
Q 023142           81 ---PNIGEFLPKLHTLVLTNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSITKKPNY---------------------  131 (286)
Q Consensus        81 ---~~~~~~l~~L~~L~Ls~N~i~~-----~~~~~~l~~l~~L~~L~L~~N~l~~ip~~---------------------  131 (286)
                         +..+..+++|++|++++|.|+.     ++.  .+..+++|++|++++|.+......                     
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence               2233345666666666666665     222  344456666666666655422111                     


Q ss_pred             ---------hHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCC
Q 023142          132 ---------RLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPT  202 (286)
Q Consensus       132 ---------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls  202 (286)
                               ....+..+++|++|++++|.+.+....          .+...+.               ....+|+.++++
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----------~l~~~l~---------------~~~~~L~~L~L~  378 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR----------ELCQGLG---------------QPGSVLRVLWLA  378 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH----------HHHHHHT---------------STTCCCCEEECT
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHH----------HHHHHHc---------------CCCCceEEEECC
Confidence                     001333444444444444444322100          0000000               003367888888


Q ss_pred             HHHHH-----HHHHHHHhcCCHHHHHHHHHHHh
Q 023142          203 PEQII-----AIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       203 ~n~l~-----~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                      +|+++     .+|..+..+++|++|++++|.+.
T Consensus       379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            88777     78999999999999999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.44  E-value=1.2e-15  Score=140.95  Aligned_cols=113  Identities=18%  Similarity=0.193  Sum_probs=69.1

Q ss_pred             CcCCCCCccEEEeeCCCCccc--cccccCCC----CcCEEeccCCCCCC-----CC-CCCCCCCCCeEeccCCcCcccCC
Q 023142           14 HFFNAIKERELDLRGNKIAVI--ENLGATED----QFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRITRINP   81 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l--~~~~~~l~----~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~Ls~N~l~~l~~   81 (286)
                      .+..+++|++|++++|.++..  ......+.    +|++|++++|.++.     ++ .+..+++|++|++++|.++....
T Consensus        51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  130 (461)
T 1z7x_W           51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL  130 (461)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence            355667888888888888642  22223344    68888888888874     23 56777888888888888765322


Q ss_pred             -----ccccCCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCC
Q 023142           82 -----NIGEFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        82 -----~~~~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~  126 (286)
                           ..+...++|++|++++|.++....   ...+..+++|++|++++|.+.
T Consensus       131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence                 112234567777777776664220   013444566666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=5.3e-13  Score=119.13  Aligned_cols=104  Identities=18%  Similarity=0.218  Sum_probs=93.7

Q ss_pred             CEEeccCC-CCCCCCCCCCCCCCCeEeccC-CcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecC
Q 023142           45 DTIDLSDN-EIVKLENMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD  122 (286)
Q Consensus        45 ~~L~Ls~N-~l~~i~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~  122 (286)
                      ..++++++ .++.+|.+..+++|+.|+|++ |+|+.+++..|..+++|+.|+|++|.|+++++ ..|.++++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence            45689998 999998899999999999996 99999999889999999999999999999987 7899999999999999


Q ss_pred             CcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142          123 NSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus       123 N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      |+|+.+|..   .+..++ |+.|++.+|.+.
T Consensus        90 N~l~~~~~~---~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWK---TVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCST---TTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHH---HcccCC-ceEEEeeCCCcc
Confidence            999999874   344454 999999999975

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=1.7e-12  Score=115.20  Aligned_cols=87  Identities=20%  Similarity=0.071  Sum_probs=62.5

Q ss_pred             CCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCcc-EEEecCCcCCCCCCchHHHHhhCCC
Q 023142           63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKS  141 (286)
Q Consensus        63 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~  141 (286)
                      +++|+.++|++|+++.++...|.+|++|+.+++.+| ++.++. ..|.+|++|+ .+.+.+ .++.|+.+   +|..|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCcc
Confidence            567777777777777777777777777777777776 776766 6777777777 777776 66666655   6777777


Q ss_pred             CcEEeCCCCChHHH
Q 023142          142 LRVLDFKKVKNKER  155 (286)
Q Consensus       142 L~~L~l~~n~~~~~  155 (286)
                      |+.+++.+|.+..+
T Consensus       299 L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          299 LRYVLATGDKITTL  312 (329)
T ss_dssp             EEEEEECSSCCCEE
T ss_pred             CCEEEeCCCccCcc
Confidence            77777776665443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=3.6e-12  Score=115.32  Aligned_cols=137  Identities=16%  Similarity=0.064  Sum_probs=90.4

Q ss_pred             CCccEEEeeCCCCcc--ccccccCCCCcCEEeccCCCCCCCC--CC-----CCCCCCCeEeccCCcCcccCC----cccc
Q 023142           19 IKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKLE--NM-----PHLNRLGTLIINNNRITRINP----NIGE   85 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~--~~-----~~l~~L~~L~Ls~N~l~~l~~----~~~~   85 (286)
                      ++|+.|+|++|.|+.  +......+++|+.|+|++|.|+...  .+     ...++|+.|+|++|.|+....    ..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            578888888887763  2233334567888888888776432  22     346788888888888876322    2224


Q ss_pred             CCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCCCCCCchH-HHHhhCCCCcEEeCCCCChHHH
Q 023142           86 FLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      .+++|++|+|++|.|+....   ...+..+++|+.|+|++|.|+......+ ..+..+++|++|++++|.+.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            67788888888888765320   0245566788888888888875332211 1466778888888888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=1.4e-12  Score=118.02  Aligned_cols=137  Identities=17%  Similarity=0.174  Sum_probs=94.2

Q ss_pred             CCccEEEeeCCCCcccc-----cccc-CCCCcCEEeccCCCCCCC--CCC-CCCCCCCeEeccCCcCcccCCccc-----
Q 023142           19 IKERELDLRGNKIAVIE-----NLGA-TEDQFDTIDLSDNEIVKL--ENM-PHLNRLGTLIINNNRITRINPNIG-----   84 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-----~~~~-~l~~L~~L~Ls~N~l~~i--~~~-~~l~~L~~L~Ls~N~l~~l~~~~~-----   84 (286)
                      +.|+.|++++|.|+...     ..+. ...+|++|+|++|.|+..  ..+ ..+++|+.|+|++|.|+......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56889999999987432     2222 236899999999988743  222 346688999999998876543222     


Q ss_pred             cCCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCCCCCCch-HHHHhhCCCCcEEeCCCCChHHH
Q 023142           85 EFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYR-LYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        85 ~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~ip~~~-~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ...++|++|+|++|.|+....   ...+..+++|++|+|++|.|+...... ...+..+++|+.|++++|.+.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            246789999999998865221   013466788999999999887432111 11567788899999999987654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.05  E-value=9.8e-10  Score=100.28  Aligned_cols=129  Identities=15%  Similarity=0.204  Sum_probs=84.1

Q ss_pred             CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142           13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L   90 (286)
                      ..|.+|.+|+.+++++|+++.++.....+.+|+.+.|..+ ++.|+  .|.+|++|+.+.+..| ++.++...|.+ .+|
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            4566777777777777777777643333567777777633 66554  5677777777777654 66666666655 567


Q ss_pred             cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-----CCCCchHHHHhhCCCCcEEeCCC
Q 023142           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-----KKPNYRLYVIHKLKSLRVLDFKK  149 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-----~ip~~~~~~l~~l~~L~~L~l~~  149 (286)
                      +.+.+ .+.++.++. ..|.+|++|+.+.+.+|.+.     .++.+   +|..|++|+.+.+..
T Consensus       251 ~~i~l-p~~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          251 TTVKL-PNGVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIPE  309 (401)
T ss_dssp             SEEEE-ETTCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCCT
T ss_pred             cEEEe-CCCccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeCC
Confidence            77777 445666665 56777777777777776654     45554   667777777777763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.99  E-value=1.1e-10  Score=111.05  Aligned_cols=133  Identities=13%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             CCCCccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCCC------CCCCCCCCCeEeccCCcCcccCCcccc
Q 023142           17 NAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKLE------NMPHLNRLGTLIINNNRITRINPNIGE   85 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~l~~L~~L~Ls~N~l~~l~~~~~~   85 (286)
                      ++++|++|++++|.++.     ++.....+++|++|++++|.++.+.      .+..+++|+.|++++|.+.+++ ..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence            45667777777776542     2333345667777777777766332      2345677777777777777664 3445


Q ss_pred             CCCCccEEEeecCcCC-C-CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142           86 FLPKLHTLVLTNNRLV-N-LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~i~-~-~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      .+++|+.|+++.+... . .+....+..+++|+.|+++++....+|.    .+..+++|++|++++|.+..
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI----LFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG----GGGGGGGCCEEEETTCCCCH
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH----HHhhcCCCcEEecCCCcCCH
Confidence            6677777777643211 0 1111245667777777777765556665    56778888888888887543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=1.6e-09  Score=98.91  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=57.9

Q ss_pred             CCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      +.+|+.+.+.. .++.|+ ..|.++++|+.+++..| ++.++  .|.+ .+|+.+.+ .+.++.++...|.+|++|+.+.
T Consensus       202 ~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          202 YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred             ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence            45566666653 255554 44555556666665543 34332  3333 44555555 2334445444555555555555


Q ss_pred             eecCcCC-----CCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeC
Q 023142           95 LTNNRLV-----NLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF  147 (286)
Q Consensus        95 Ls~N~i~-----~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l  147 (286)
                      +.+|.+.     .++. ..|.+|++|+.+.+. +.++.|+.+   +|..|++|+.+.+
T Consensus       278 l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~-~~i~~I~~~---aF~~c~~L~~l~l  330 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHP-YCLEGCPKLARFEIP-ESIRILGQG---LLGGNRKVTQLTI  330 (401)
T ss_dssp             EESSCCCCCTTCEECT-TTTTTCTTCCEECCC-TTCCEECTT---TTTTCCSCCEEEE
T ss_pred             eCCccccCCcccEECH-HHhhCCccCCeEEeC-CceEEEhhh---hhcCCCCccEEEE
Confidence            5544433     2333 344455555555554 234444443   4444445554444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.94  E-value=1.1e-11  Score=118.08  Aligned_cols=208  Identities=16%  Similarity=0.060  Sum_probs=121.0

Q ss_pred             cCCCCCccEEEeeCCCCcc--ccccccCCCCcCEEeccCCCCCC--CCC-CCCCCCCCeEecc-----------CCcCcc
Q 023142           15 FFNAIKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVK--LEN-MPHLNRLGTLIIN-----------NNRITR   78 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~-~~~l~~L~~L~Ls-----------~N~l~~   78 (286)
                      +..+++|++|++++|.++.  ++..+..+++|++|+++ +.+..  ++. +..+++|++|+++           .|.++.
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            4567889999999998762  33445678888888888 44432  222 3557778888888           355654


Q ss_pred             cC-CccccCCCCccEEEeecCcCCCCCCCccCCC-CCCccEEEec----CCcCCCCCCc--hHHHHhhCCCCcEEeCCCC
Q 023142           79 IN-PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS-LPKLQFLSLL----DNSITKKPNY--RLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        79 l~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~-l~~L~~L~L~----~N~l~~ip~~--~~~~l~~l~~L~~L~l~~n  150 (286)
                      .. ...+..+++|++|+++.|.++.... ..+.. +++|+.|+++    .|.++..|..  ....+..+++|++|+++.+
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESL-ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR  446 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHH-HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHH-HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence            21 1223457788888887777765322 23333 7778888875    5666654432  1114566777777777543


Q ss_pred             C--hHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCC--CChh-hhccCCccCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 023142          151 K--NKERMEAASLFASEEMEEEAKKESMKTLMPVEVPN--VSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVA  223 (286)
Q Consensus       151 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~l~ls~n~l~--~ip~~i~~~~~L~~l~  223 (286)
                      .  +..... ........      .+....+....+.+  ++.. ..+.+|+.+++++|.++  .++..+..+++|++|+
T Consensus       447 ~~~l~~~~~-~~~~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          447 QGGLTDLGL-SYIGQYSP------NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             GGGCCHHHH-HHHHHSCT------TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred             CCCccHHHH-HHHHHhCc------cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence            2  221110 00111000      01111111101110  0011 24568999999999876  4666678899999999


Q ss_pred             HHHHHHhc
Q 023142          224 RLEKVLKS  231 (286)
Q Consensus       224 l~~N~l~~  231 (286)
                      +++|.++.
T Consensus       520 ls~n~it~  527 (592)
T 3ogk_B          520 VQGYRASM  527 (592)
T ss_dssp             EESCBCCT
T ss_pred             CcCCcCCH
Confidence            99999853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.88  E-value=2.3e-12  Score=122.68  Aligned_cols=212  Identities=10%  Similarity=0.075  Sum_probs=121.6

Q ss_pred             cCCCCCccEEEeeCCC-Cccc---------------cccccCCCCcCEEeccCCCCCCC--CCCC-CCCCCCeEeccCC-
Q 023142           15 FFNAIKERELDLRGNK-IAVI---------------ENLGATEDQFDTIDLSDNEIVKL--ENMP-HLNRLGTLIINNN-   74 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~-l~~l---------------~~~~~~l~~L~~L~Ls~N~l~~i--~~~~-~l~~L~~L~Ls~N-   74 (286)
                      +..+++|+.|+++++. +..+               +.....+++|++|+|++|.++..  ..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            3456788899998875 2222               12234578899999998887643  2343 5788999999888 


Q ss_pred             cCccc-CCccccCCCCccEEEeecCcCCCCCC--C-ccCCCCCCccEEEecCCcCCCCCCchHH-HHhhCCCCcEEeCCC
Q 023142           75 RITRI-NPNIGEFLPKLHTLVLTNNRLVNLVE--I-DPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVLDFKK  149 (286)
Q Consensus        75 ~l~~l-~~~~~~~l~~L~~L~Ls~N~i~~~~~--~-~~l~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L~l~~  149 (286)
                      .++.. .+..+..+++|++|++++|.++....  + .....+++|+.|++++|. ..+....+. .+..+++|++|++++
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence            55542 12334578889999999888776432  0 123367789999998887 333322221 345678888888888


Q ss_pred             C-ChHHHHHHHHHhhcchhHH------------------HHHhhh---cc-cCCCCCCCCCChh-hhccCCccCCCCHHH
Q 023142          150 V-KNKERMEAASLFASEEMEE------------------EAKKES---MK-TLMPVEVPNVSEE-EEQQTPKVVAPTPEQ  205 (286)
Q Consensus       150 n-~~~~~~~~~~~~~~~~~~~------------------~~~~~~---~~-~~~~~~~~~~~~~-~~~~~l~~l~ls~n~  205 (286)
                      | .+..++.............                  ......   .. .+.......++.. ..+.+|+.++++.|.
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  300 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT  300 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence            7 4444332222111111000                  000000   00 0100000111122 256788888888887


Q ss_pred             HH--HHHHHHHhcCCHHHHHHHHH
Q 023142          206 II--AIKAAIVNSQTLEEVARLEK  227 (286)
Q Consensus       206 l~--~ip~~i~~~~~L~~l~l~~N  227 (286)
                      ++  .++..+..+++|++|++.+|
T Consensus       301 l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          301 VQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCHHHHHHHHhcCCCcCEEeCcCc
Confidence            65  34445667888887777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.88  E-value=6.2e-10  Score=105.78  Aligned_cols=128  Identities=12%  Similarity=0.099  Sum_probs=89.9

Q ss_pred             cEEEeeCCCCccccccccCCCCcCEEeccCCCC-CCC---C-C------------CCCCCCCCeEeccCCcCcccCCccc
Q 023142           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEI-VKL---E-N------------MPHLNRLGTLIINNNRITRINPNIG   84 (286)
Q Consensus        22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i---~-~------------~~~l~~L~~L~Ls~N~l~~l~~~~~   84 (286)
                      +.++++.+........+..+++|+.|+++++.. ..+   | .            +..+++|++|+|++|.+++.....+
T Consensus        46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l  125 (594)
T 2p1m_B           46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI  125 (594)
T ss_dssp             CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence            356666654444445666789999999999862 222   1 1            1357899999999999887544333


Q ss_pred             -cCCCCccEEEeecC-cCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHH-HHhhCCCCcEEeCCCCC
Q 023142           85 -EFLPKLHTLVLTNN-RLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVLDFKKVK  151 (286)
Q Consensus        85 -~~l~~L~~L~Ls~N-~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L~l~~n~  151 (286)
                       ..+++|++|++++| .++.  ++.  .+.++++|++|++++|.++......+. ....+++|+.|++++|.
T Consensus       126 ~~~~~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          126 AKSFKNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HHHCTTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             HHhCCCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence             36899999999999 5554  332  344799999999999997754321110 23477899999999986

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.76  E-value=4.9e-09  Score=90.22  Aligned_cols=103  Identities=28%  Similarity=0.321  Sum_probs=77.7

Q ss_pred             EeccCCCCCCCCC-----CCCCCCCCeEeccCCcCcccCC--ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142           47 IDLSDNEIVKLEN-----MPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS  119 (286)
Q Consensus        47 L~Ls~N~l~~i~~-----~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~  119 (286)
                      ++++.|....++.     ...+++|+.|+|++|+|++++.  ..+..+++|+.|+|++|.|+++..+..+..+ +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            4555664443321     2457899999999999998753  4556889999999999999988655556655 899999


Q ss_pred             ecCCcCCC-CC---CchHHHHhhCCCCcEEeCCCC
Q 023142          120 LLDNSITK-KP---NYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus       120 L~~N~l~~-ip---~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      |++|+++. +|   .++...+..+|+|+.||....
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence            99999984 44   455567899999999997654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=1.5e-08  Score=82.38  Aligned_cols=121  Identities=12%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             cccccCCCCcCEEeccCC-CCCCC------CCCCCCCCCCeEeccCCcCcccCC----ccccCCCCccEEEeecCcCCCC
Q 023142           35 ENLGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNL  103 (286)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~  103 (286)
                      ...+...++|++|+|++| .|..-      ..+...++|++|+|++|+|.....    ..+...++|++|+|++|.|...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344556788999999998 88742      245677899999999999876321    2234567899999999998762


Q ss_pred             CC---CccCCCCCCccEEEe--cCCcCCCCCCc-hHHHHhhCCCCcEEeCCCCChHHH
Q 023142          104 VE---IDPLTSLPKLQFLSL--LDNSITKKPNY-RLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus       104 ~~---~~~l~~l~~L~~L~L--~~N~l~~ip~~-~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ..   ...+...+.|++|+|  ++|.|...... ....+...++|++|++++|.+...
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            10   125677889999999  88999843211 112677889999999999998754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=2.6e-08  Score=89.62  Aligned_cols=136  Identities=13%  Similarity=0.096  Sum_probs=78.4

Q ss_pred             CCCCCccEEEeeCCCCc----------cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc-
Q 023142           16 FNAIKERELDLRGNKIA----------VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG-   84 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~----------~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~-   84 (286)
                      ..+++|+.|.+..+...          .+...+..+++|+.|.|++|.-..++.+. +++|+.|.+..+.+..-....+ 
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence            34567788877654321          23344556778888888777322344443 7788888888777654221111 


Q ss_pred             -cCCCCccEEEeec--CcC------CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHh---hCCCCcEEeCCCCCh
Q 023142           85 -EFLPKLHTLVLTN--NRL------VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH---KLKSLRVLDFKKVKN  152 (286)
Q Consensus        85 -~~l~~L~~L~Ls~--N~i------~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~---~l~~L~~L~l~~n~~  152 (286)
                       ..+|+|+.|+|+.  |..      ..+.++-....+++|++|+|.+|.+......   .+.   .+++|++|+++.|.+
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~---~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE---MFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH---HHHHCSSGGGCSEEECCSSCC
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH---HHHhCccCCCCCEEECCCCCC
Confidence             2577888888753  221      1111100112477888888888777631111   222   467788888888876


Q ss_pred             HHH
Q 023142          153 KER  155 (286)
Q Consensus       153 ~~~  155 (286)
                      .+.
T Consensus       292 ~d~  294 (362)
T 2ra8_A          292 TDE  294 (362)
T ss_dssp             BHH
T ss_pred             ChH
Confidence            543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=7e-09  Score=84.37  Aligned_cols=112  Identities=18%  Similarity=0.065  Sum_probs=86.1

Q ss_pred             cCCCCCccEEEeeCC-CCcc-----ccccccCCCCcCEEeccCCCCCCC------CCCCCCCCCCeEeccCCcCcccC--
Q 023142           15 FFNAIKERELDLRGN-KIAV-----IENLGATEDQFDTIDLSDNEIVKL------ENMPHLNRLGTLIINNNRITRIN--   80 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n-~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~--   80 (286)
                      +...+.|++|+|++| .|+.     +...+...++|++|+|++|.|..-      ..+...+.|++|+|++|.|+...  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456788999999999 9873     445566678999999999999842      13566789999999999998732  


Q ss_pred             --CccccCCCCccEEEe--ecCcCCCCCC---CccCCCCCCccEEEecCCcCC
Q 023142           81 --PNIGEFLPKLHTLVL--TNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        81 --~~~~~~l~~L~~L~L--s~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~  126 (286)
                        ...+...++|++|+|  ++|.|.....   ...+...++|++|+|++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              233456788999999  8899875321   024556789999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.44  E-value=1.1e-06  Score=79.00  Aligned_cols=130  Identities=14%  Similarity=0.194  Sum_probs=97.4

Q ss_pred             CCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        13 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ..+..+.+|+.+.+..+ ++.+. ..+..+..|+.+.+..+ ++.++  .|.++.+|+.+.+.. .+..++...|.+|++
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence            34555667777776544 44444 45566788888888765 66664  678888888888864 477788888888889


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      |+.+.+.++.++.++. ..|.+|.+|+.+.|..+ ++.|..+   +|..|.+|+.+.+..+
T Consensus       288 L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          288 LTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCTT
T ss_pred             cccccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECCc
Confidence            9999888888888877 78888889999888754 7777776   7888888888887554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=3.3e-08  Score=88.91  Aligned_cols=138  Identities=16%  Similarity=0.245  Sum_probs=92.9

Q ss_pred             CCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCC--CCC--CCCCCCCeEeccC--Cc------CcccCCcc
Q 023142           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL--ENM--PHLNRLGTLIINN--NR------ITRINPNI   83 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~--~~l~~L~~L~Ls~--N~------l~~l~~~~   83 (286)
                      ..+++|+.|++++|.--.++. +. +++|+.|+|..+.+..-  ..+  ..+++|+.|+|+.  |.      +..+.+..
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            456899999999984224554 33 88999999999887632  223  3789999999864  22      22221111


Q ss_pred             c-cCCCCccEEEeecCcCCCCCC--CccCCCCCCccEEEecCCcCCCCCCchH-HHHhhCCCCcEEeCCCCChHHH
Q 023142           84 G-EFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        84 ~-~~l~~L~~L~Ls~N~i~~~~~--~~~l~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      . ..+++|++|++++|.+.....  +.....+++|++|+|+.|.+.......+ ..+..+++|+.|+++.|.+.+.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            1 257999999999998864211  1112357899999999999885211110 0346789999999999987643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.42  E-value=6.5e-07  Score=81.04  Aligned_cols=108  Identities=12%  Similarity=0.251  Sum_probs=78.1

Q ss_pred             ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCC
Q 023142           36 NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP  113 (286)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~  113 (286)
                      ..|..+..|+.+.+..+. ..++  .|.+++.|+.+.+. +.++.++...|.+|.+|+.+.+..+ ++.+.. ..|.+|.
T Consensus       259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCT
T ss_pred             ceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCC
Confidence            456667778888776543 3343  57778888888875 5577777788888888888888653 666666 6788888


Q ss_pred             CccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC
Q 023142          114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK  151 (286)
Q Consensus       114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~  151 (286)
                      +|+.+.+..+ ++.|..+   +|..|.+|+.+++.++.
T Consensus       335 ~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSCH
T ss_pred             CCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCce
Confidence            8888888644 7777665   67888888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.42  E-value=7.7e-07  Score=79.95  Aligned_cols=123  Identities=15%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~   88 (286)
                      ...|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ++.++  .|.++.+|+.+.+.++.++.++...|.+|.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            345788999999999876 77776 56777899999999654 67665  689999999999999999999999999999


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL  142 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L  142 (286)
                      +|+.+.+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.|..+   +|..+..+
T Consensus       311 ~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I~~~---aF~~c~~~  358 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLIESG---AFEGSSIT  358 (379)
T ss_dssp             TCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEECTT---TTTTSSCC
T ss_pred             CCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEEchh---HhhCCCCC
Confidence            9999999754 888877 78999999999999765 7777765   66666544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=1.9e-07  Score=80.24  Aligned_cols=104  Identities=20%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             cCCCCCccE--EEeeCCCCccccccc----cCCCCcCEEeccCCCCCCCCCC----CCCCCCCeEeccCCcCcccCC-cc
Q 023142           15 FFNAIKERE--LDLRGNKIAVIENLG----ATEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNNRITRINP-NI   83 (286)
Q Consensus        15 ~~~l~~L~~--L~Ls~n~l~~l~~~~----~~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~Ls~N~l~~l~~-~~   83 (286)
                      |...+.|..  ++++.|....++..+    ..+++|+.|+|++|.|+.++.+    ..+++|+.|+|++|+|+++.. ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            444455665  778888766555322    4588999999999999987643    479999999999999998732 22


Q ss_pred             ccCCCCccEEEeecCcCCC-CCCC-----ccCCCCCCccEEE
Q 023142           84 GEFLPKLHTLVLTNNRLVN-LVEI-----DPLTSLPKLQFLS  119 (286)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~-~~~~-----~~l~~l~~L~~L~  119 (286)
                      +..+ +|++|+|++|.+.. ++..     ..+..+++|+.||
T Consensus       217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            2333 89999999999875 3310     1366789998886

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.30  E-value=1.9e-06  Score=77.95  Aligned_cols=128  Identities=10%  Similarity=0.109  Sum_probs=84.8

Q ss_pred             cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      |.++..|+.+.+..+...--...+..+..++.+.+..+.+.. ..|..+.+|+.+.+..+ ++.++...|.+|.+|+.++
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID  326 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence            444444555554444322222334445555555444332111 14677888888888654 7788888888888899888


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      +.. .++.+.. ..|.+|.+|+.+.+..+ ++.|+..   +|..|.+|+.+++..+
T Consensus       327 lp~-~v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          327 LPY-LVEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCT-TCCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEEEGG
T ss_pred             eCC-cccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEECCC
Confidence            864 4777776 68888999999988766 7777766   7888888988888654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=1.1e-05  Score=72.90  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=46.3

Q ss_pred             cCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142           15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~   91 (286)
                      |.++..|+.+.+..+.. .+. ..+.++..|+.+.+. +.++.++  .|.+|.+|+.+.+..+ ++.+....|.+|.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            44444444444433322 222 333444445555443 2334443  3444555555555432 4444444444555555


Q ss_pred             EEEeecCcCCCCCCCccCCCCCCccEEEecCC
Q 023142           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN  123 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N  123 (286)
                      .+.+..+ ++.+.. ..|.+|++|+.+.+.++
T Consensus       338 ~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          338 RIAIPSS-VTKIPE-SAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEEECTT-CCBCCG-GGGTTCTTCCEEEESSC
T ss_pred             EEEECcc-cCEEhH-hHhhCCCCCCEEEECCc
Confidence            5555322 444443 44555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.18  E-value=3.5e-06  Score=76.19  Aligned_cols=123  Identities=9%  Similarity=0.073  Sum_probs=97.9

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ...|.++..++.+.+..+.+.  ...+..+.+|+.+.+..+ ++.|+  .|.++.+|+.+.+..+ ++.++...|.+|.+
T Consensus       269 ~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS  344 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred             ccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence            445778888888887765432  245667899999999765 77775  6899999999999754 89999999999999


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEE
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (286)
                      |+.+.+..+ ++.+.. .+|.+|++|+.+.+..+ +..+..    .|..+++|+.+
T Consensus       345 L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~-~~~~~~----~F~~c~~L~~I  393 (394)
T 4fs7_A          345 LSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR-LEQYRY----DFEDTTKFKWI  393 (394)
T ss_dssp             CCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG-GGGGGG----GBCTTCEEEEE
T ss_pred             CCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC-CEEhhh----eecCCCCCcEE
Confidence            999999876 888887 79999999999999764 444432    67888888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=7.3e-07  Score=71.62  Aligned_cols=82  Identities=16%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             CCcCEEeccCCCCCCC--CCCCCCCCCCeEeccCC-cCcccCCccccC----CCCccEEEeecCc-CCCCCCCccCCCCC
Q 023142           42 DQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNN-RITRINPNIGEF----LPKLHTLVLTNNR-LVNLVEIDPLTSLP  113 (286)
Q Consensus        42 ~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~----l~~L~~L~Ls~N~-i~~~~~~~~l~~l~  113 (286)
                      ..|+.||++++.|+..  ..+..+++|+.|+|++| +|++-.-..+..    +++|++|++++|. |+.-. +..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence            3567777777766633  34566777777777776 355432122222    2356777777663 55422 23455666


Q ss_pred             CccEEEecCCc
Q 023142          114 KLQFLSLLDNS  124 (286)
Q Consensus       114 ~L~~L~L~~N~  124 (286)
                      +|++|++++++
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=6.3e-06  Score=66.14  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=65.1

Q ss_pred             CCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCC-CCCC--CCCCCC----CCCCeEeccCC-cCcccCCccccCC
Q 023142           17 NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNE-IVKL--ENMPHL----NRLGTLIINNN-RITRINPNIGEFL   87 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~l----~~L~~L~Ls~N-~l~~l~~~~~~~l   87 (286)
                      .-.+|+.|+++++.|+..- ..+..+++|+.|+|++|. |++-  ..+..+    ++|+.|+|++| +|++-.-..+..+
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            4457999999999988432 334679999999999995 6642  344443    58999999998 5887443445678


Q ss_pred             CCccEEEeecCc-CCC
Q 023142           88 PKLHTLVLTNNR-LVN  102 (286)
Q Consensus        88 ~~L~~L~Ls~N~-i~~  102 (286)
                      ++|++|+++++. |+.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            999999999984 554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=7.3e-05  Score=56.89  Aligned_cols=55  Identities=25%  Similarity=0.245  Sum_probs=34.8

Q ss_pred             eEeccCCcCc--ccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC
Q 023142           68 TLIINNNRIT--RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        68 ~L~Ls~N~l~--~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  126 (286)
                      .++.+++.++  .+|..+.   ++|+.|+|++|+|+.++. ..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            5566666666  5654321   356667777777777665 56666677777777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.60  E-value=0.0001  Score=55.99  Aligned_cols=54  Identities=24%  Similarity=0.378  Sum_probs=34.5

Q ss_pred             EEeccCCCCC--CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCC
Q 023142           46 TIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV  101 (286)
Q Consensus        46 ~L~Ls~N~l~--~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~  101 (286)
                      .++.+++.++  .+| .+.  ++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5556666665  555 222  35666777777777777766767777777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.14  E-value=0.00053  Score=55.86  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=81.7

Q ss_pred             ccccCCCCcCEEeccCC-CCCCC------CCCCCCCCCCeEeccCCcCcccCC----ccccCCCCccEEEeecCcCCCCC
Q 023142           36 NLGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLV  104 (286)
Q Consensus        36 ~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~~  104 (286)
                      ..+..-+.|+.|+|++| .|..-      ..+...+.|+.|+|++|+|.+...    ..+..-+.|++|+|++|.|..-.
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33445678999999885 77632      245677899999999999986432    22234568999999999987522


Q ss_pred             C---CccCCCCCCccEEEecCCcCCCCCC----chHHHHhhCCCCcEEeCCCCChHHH
Q 023142          105 E---IDPLTSLPKLQFLSLLDNSITKKPN----YRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus       105 ~---~~~l~~l~~L~~L~L~~N~l~~ip~----~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      .   ...+..-+.|+.|+|++|....+..    ....++..-+.|..|+++.|.+...
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~  172 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR  172 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH
Confidence            1   1235556779999998764322221    1112678889999999999987644

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.97  E-value=0.00014  Score=59.33  Aligned_cols=109  Identities=11%  Similarity=0.112  Sum_probs=76.9

Q ss_pred             CCCCccEEEeeCC-CCcc-----ccccccCCCCcCEEeccCCCCCCC--C----CCCCCCCCCeEeccCCcCcccCC---
Q 023142           17 NAIKERELDLRGN-KIAV-----IENLGATEDQFDTIDLSDNEIVKL--E----NMPHLNRLGTLIINNNRITRINP---   81 (286)
Q Consensus        17 ~l~~L~~L~Ls~n-~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i--~----~~~~l~~L~~L~Ls~N~l~~l~~---   81 (286)
                      +-+.|+.|+|++| +|..     +-..+..-..|+.|+|++|.|..-  .    .+...+.|++|+|++|+|+.-..   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4568999999986 8862     444555677899999999999853  2    34567899999999999986432   


Q ss_pred             -ccccCCCCccEEEeecCcCCCCCC------CccCCCCCCccEEEecCCcC
Q 023142           82 -NIGEFLPKLHTLVLTNNRLVNLVE------IDPLTSLPKLQFLSLLDNSI  125 (286)
Q Consensus        82 -~~~~~l~~L~~L~Ls~N~i~~~~~------~~~l~~l~~L~~L~L~~N~l  125 (286)
                       ..+..-+.|++|+|++|....+..      ...+..-+.|+.|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             223344679999998764322221      01344567899999987654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.21  E-value=0.66  Score=32.96  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=28.6

Q ss_pred             cCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecC
Q 023142           75 RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD  122 (286)
Q Consensus        75 ~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~  122 (286)
                      .++.|....|.+|.+|+.+.+-.+ ++.+.. ..|.+|.+|+.+.+..
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcC
Confidence            455666666666666666666543 555554 5666677777666654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=85.34  E-value=2.8  Score=29.56  Aligned_cols=47  Identities=15%  Similarity=0.191  Sum_probs=37.7

Q ss_pred             CCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           51 DNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        51 ~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      +..++.|.  .|.+|.+|+.+.+..+ ++.|....|.+|.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34566674  6888999999988865 78888888889999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-38
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-09
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 7e-38
 Identities = 94/161 (58%), Positives = 119/161 (73%)

Query: 2   VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP 61
           V+LTA+LI ++  + NA+++RELDLRG KI VIENLGAT DQFD ID SDNEI KL+  P
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121
            L RL TL++NNNRI RI   + + LP L  L+LTNN LV L ++DPL SL  L +L +L
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF 162
            N +T K +YRLYVI+K+  +RVLDF+KVK KER EA  +F
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF 161

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 21/121 (17%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGE-------------------- 85
            + L+  ++  L ++  L  +  L +++NR+  + P +                      
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 86  -FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRV 144
             LP+L  L+L NNRL     I PL S P+L  L+L  NS+ ++   +  +   L S+  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 145 L 145
           +
Sbjct: 122 I 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 29/158 (18%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I             EL L GN++  I  L +       +DL++N+I  L  +  L +L  
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANNQISNLAPLSGLTKLTE 267

Query: 69  LIINNNRITRINPNIG--------------------EFLPKLHTLVLTNNRLVNLVEIDP 108
           L +  N+I+ I+P  G                      L  L  L L  N   N+ +I P
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN---NISDISP 324

Query: 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146
           ++SL KLQ L   +N ++   +     +  L ++  L 
Sbjct: 325 VSSLTKLQRLFFANNKVSDVSS-----LANLTNINWLS 357

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 8e-10
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 46  TIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVE 105
            + L  N I  +  +  L +L  L   NN+++ +  ++   L  ++ L   +N    + +
Sbjct: 311 YLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV-SSLAN-LTNINWLSAGHN---QISD 365

Query: 106 IDPLTSLPKLQFLSLLDN 123
           + PL +L ++  L L D 
Sbjct: 366 LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 9e-10
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 9   IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGT 68
           I          K  EL L  N+I+ I  L         ++L++N++  +  + +L  L  
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKNLTY 311

Query: 69  LIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128
           L +  N I+ I+P +   L KL  L   NN    + ++  L +L  + +LS   N I+  
Sbjct: 312 LTLYFNNISDISP-VSS-LTKLQRLFFANN---KVSDVSSLANLTNINWLSAGHNQISDL 366

Query: 129 PNYRLYVIHKLKSLRVLD 146
                  +  L  +  L 
Sbjct: 367 TP-----LANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 10  WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTL 69
                  N      L L  N I+ I  + +   +   +  ++N++  + ++ +L  +  L
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNKVSDVSSLANLTNINWL 356

Query: 70  IINNNRITRINPNIGEFLPKLHTLVLTNN 98
              +N+I+ + P     L ++  L L + 
Sbjct: 357 SAGHNQISDLTPLAN--LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 48  DLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
            L    +    +   L+++ TL  +   I  I   + E+L  L  +  +NN    L +I 
Sbjct: 28  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGV-EYLNNLTQINFSNN---QLTDIT 82

Query: 108 PLTSLPKLQFL 118
           PL +L KL  +
Sbjct: 83  PLKNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 43  QFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN 102
             +++  ++N+I  +  +  L  L  L +N N++  I   +   L  L  L L NN++ N
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLAS-LTNLTDLDLANNQISN 255

Query: 103 LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141
           L    PL+ L KL  L L  N I+               
Sbjct: 256 LA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 42 DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93
          DQ  T+      I  ++ + +LN L  +  +NN++T I P   + L KL  +
Sbjct: 44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 52  NEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS 111
           N+I     +    +    ++    +T         L ++ TL         +  ID +  
Sbjct: 13  NQIFTDTALAEKMKT---VLGKTNVTDTVSQ--TDLDQVTTLQADRL---GIKSIDGVEY 64

Query: 112 LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147
           L  L  ++  +N +T         +  L  L  +  
Sbjct: 65  LNNLTQINFSNNQLTDITP-----LKNLTKLVDILM 95

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 52.0 bits (123), Expect = 9e-09
 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 32/185 (17%)

Query: 10  WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFD---TIDLSDNEIVKLENMPHLNRL 66
           ++      A +  +++L G  I  IE + AT         + LS N I K+ ++  +  L
Sbjct: 14  FEERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENL 72

Query: 67  GTLIINNNRITRINPNIGEFL---------------------PKLHTLVLTNNRLVNLVE 105
             L +  N I +I                               L  L ++NN++ N  E
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 106 IDPLTSLPKLQFLSLLDNSITKKP-------NYRLYVIHKLKSLRVLDFKKVKNKERMEA 158
           ID L +L KL+ L L  N +            YR+ V+ +L +L+ LD   V   ER +A
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQA 192

Query: 159 ASLFA 163
                
Sbjct: 193 NVARG 197

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRIN 80
           + LDL    +    +L   ++    ++   +    L  +  ++  L +L ++NNR+ R++
Sbjct: 25  QALDL--KGLRSDPDLV-AQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLD 81

Query: 81  PNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK----KPNYRLY 134
                    P L  L L+ N L +  E+D      KL+ L L  NS++     +  Y   
Sbjct: 82  DMSSIVQKAPNLKILNLSGNELKSERELDK-IKGLKLEELWLDGNSLSDTFRDQSTYISA 140

Query: 135 VIHKLKSLRVLDFKKVK 151
           +  +   L  LD  ++ 
Sbjct: 141 IRERFPKLLRLDGHELP 157

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
                  L  L ++NN++      +    P+L  L+ + N L  + E         L+ L
Sbjct: 279 LCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPE-----LPQNLKQL 329

Query: 119 SLLDNSITKKPNYRLYVIHKLKSLRV 144
            +  N + + P+    +   ++ LR+
Sbjct: 330 HVEYNPLREFPD----IPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 31/96 (32%)

Query: 22  RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP 81
            EL++  NK+  +  L                           RL  LI + N +  +  
Sbjct: 287 EELNVSNNKLIELPAL-------------------------PPRLERLIASFNHLAEVP- 320

Query: 82  NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117
              E    L  L +  N L    +I    S+  L+ 
Sbjct: 321 ---ELPQNLKQLHVEYNPLREFPDI--PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 27  RGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGE 85
              ++AV       + Q   ++L++  +  L E  PHL    +L+ + N +T +     E
Sbjct: 23  EQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE---SLVASCNSLTELP----E 75

Query: 86  FLPKLHTLVLTNNRLVNLVEIDPLTSLPK 114
               L +L++ NN L  L ++ PL     
Sbjct: 76  LPQSLKSLLVDNNNLKALSDLPPLLEYLG 104

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 7e-07
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 43  QFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV 101
               +  SD  + K+ +++P       L + NN+IT I     + L  LHTL+L NN++ 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 102 NLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL 139
            +        L KL+ L L  N + + P      + +L
Sbjct: 69  KISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 46  TIDLSDNEIVKLEN--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103
            +DL +N+I ++++    +L  L TLI+ NN+I++I+P     L KL  L L+ N+L  L
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 104 VEIDPLTSLPKLQFLSLLDNSITK 127
               P      LQ L + +N ITK
Sbjct: 95  ----PEKMPKTLQELRVHENEITK 114

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 15  FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN 74
           F   +K   L L  N++  +        Q   +  ++   V+      LN++  + +  N
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 75  RITRINPNIGEF--LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR 132
            +       G F  + KL  + + +  +  +    P    P L  L L  N ITK     
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTI----PQGLPPSLTELHLDGNKITKVDAAS 190

Query: 133 LYVIHKLKSLR 143
           L  ++ L  L 
Sbjct: 191 LKGLNNLAKLG 201

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 71  INNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123
           + NNRI    P     L  LH+L ++ N L    EI    +L +    +  +N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANN 301

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 8e-05
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 59  NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFL 118
                      + +NN +  +  ++         L ++  R+ +L     L +L KL+  
Sbjct: 172 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRAR 230

Query: 119 SLLDNSITKKPN 130
           S    ++ K P 
Sbjct: 231 ST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 11/55 (20%)

Query: 62  HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ 116
             +    L I+  RI  +     E L KL      N           L  LP L+
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN-----------LKKLPTLE 242

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 48  DLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEID 107
           +L    +        LN +  +I NN+ I  +     ++LP +  L L  N+L ++  + 
Sbjct: 30  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDIKPLA 87

Query: 108 PLT 110
            L 
Sbjct: 88  NLK 90

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 52  NEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS 111
           N+I  +  +  L +L TL + +N+I+ I P  G  L KL  L L+ N   ++ ++  L  
Sbjct: 144 NKITDITVLSRLTKLDTLSLEDNQISDIVPLAG--LTKLQNLYLSKN---HISDLRALAG 198

Query: 112 LPKLQFLSL 120
           L  L  L L
Sbjct: 199 LKNLDVLEL 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 85  EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRV 144
             L  L  L         + +I PL SLP L  + L +N I+         +    +L +
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFI 221

Query: 145 LDF 147
           +  
Sbjct: 222 VTL 224

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 90  LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLD 146
           + +L +    L +    + L  L + Q + L D  +T+     +   +    +L  L+
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 46  TIDLSDNEIVKL---ENMPHLNRLGTLIINNNRITRINP-NIGEFL---PKLHTLVLTNN 98
           ++D+   E+      E +P L +   + +++  +T     +I   L   P L  L L +N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 99  RLVNLVEIDPLTSL----PKLQFLSL 120
            L ++     L  L     K+Q LSL
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 46  TIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104
            ++     +  L  ++P       L ++ N +   +        +L  L L    L  L 
Sbjct: 14  EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 105 EIDPLTSL 112
               L  L
Sbjct: 72  VDGTLPVL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.55
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.18
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.85
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.47
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.76
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.93

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-27  Score=187.98  Aligned_cols=161  Identities=58%  Similarity=0.891  Sum_probs=151.8

Q ss_pred             cccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCC
Q 023142            2 VRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINP   81 (286)
Q Consensus         2 ~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~   81 (286)
                      ||||.+.|...+.|.++.++++|+|++|+|+.++..+..+++|++|+|++|.|+.++.|..+++|++|++++|+++.+++
T Consensus         1 ~rLt~~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~   80 (162)
T d1a9na_           1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE   80 (162)
T ss_dssp             CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECS
T ss_pred             CCCCHHHHhhhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCc
Confidence            69999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHH
Q 023142           82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASL  161 (286)
Q Consensus        82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  161 (286)
                      ..+..+++|++|++++|+|+.++.+..+..+++|++|++++|+++..+.++.+.++.+|+|++||.......++..++.+
T Consensus        81 ~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~er~~A~~~  160 (162)
T d1a9na_          81 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM  160 (162)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHT
T ss_pred             cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHHHHHHHHHH
Confidence            88888999999999999999988766789999999999999999999998888899999999999999998888888776


Q ss_pred             h
Q 023142          162 F  162 (286)
Q Consensus       162 ~  162 (286)
                      |
T Consensus       161 ~  161 (162)
T d1a9na_         161 F  161 (162)
T ss_dssp             T
T ss_pred             h
Confidence            6

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.9e-22  Score=169.51  Aligned_cols=175  Identities=21%  Similarity=0.193  Sum_probs=138.5

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      +++++|+|++|+|+.+| ..+.++++|++|+|++|.|+.++.++.+++|++|+|++|+++.++.. +..+++|+.|++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSF  109 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCS
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence            57899999999999887 56778899999999999999888888899999999999999887654 46888999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK  177 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (286)
                      |.+..++. ..+..+.+++.|++++|.++.++..   .+..+++|+.+++++|.++.++                     
T Consensus       110 ~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~~---~~~~l~~l~~l~l~~N~l~~~~---------------------  164 (266)
T d1p9ag_         110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELP---------------------  164 (266)
T ss_dssp             SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCCSCCC---------------------
T ss_pred             cccceeec-cccccccccccccccccccceeccc---cccccccchhcccccccccccC---------------------
Confidence            99888876 6778888899999999988888765   5677888999999988754321                     


Q ss_pred             cCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023142          178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKV  228 (286)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~  228 (286)
                         ++.+      ..+.+|+.|+|++|+|+.||+.+..+++|+.|++++|.
T Consensus       165 ---~~~~------~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         165 ---AGLL------NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ---TTTT------TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ---cccc------ccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence               1111      13556777788888877777777777777777776664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.2e-19  Score=137.36  Aligned_cols=121  Identities=28%  Similarity=0.388  Sum_probs=108.1

Q ss_pred             cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142           22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL  100 (286)
Q Consensus        22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i  100 (286)
                      |+|++++|+|+.++. +..+++|++|++++|.|+.+| .|+.+++|+.|++++|+|+.++.  +..+++|++|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--cccccccCeEECCCCcc
Confidence            589999999999986 567999999999999999997 68999999999999999999853  57899999999999999


Q ss_pred             CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEE
Q 023142          101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL  145 (286)
Q Consensus       101 ~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L  145 (286)
                      +.++.+..+..+++|+.|++++|+++.++.++...+..+|+|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            998876678899999999999999998877766678889998876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2e-20  Score=152.34  Aligned_cols=127  Identities=24%  Similarity=0.249  Sum_probs=115.5

Q ss_pred             ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142           21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN   97 (286)
Q Consensus        21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~   97 (286)
                      .+.++.++++++.||..+  .+++++|+|++|.|+. ++  .|..+++|+.|+|++|++..+++..|..+++|++|+|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            468999999999999765  3689999999999985 43  578999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      |+|+.+++ ..|.++++|++|+|++|+|+.++..   .|..+++|++|++++|.+.
T Consensus        88 N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~---~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCH-HHHhCCCcccccccCCccccccCHH---HhcCCcccccccccccccc
Confidence            99999988 7899999999999999999999775   6889999999999999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.7e-19  Score=150.68  Aligned_cols=143  Identities=24%  Similarity=0.284  Sum_probs=86.6

Q ss_pred             cCHHHHhC--CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEecc--------
Q 023142            4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIIN--------   72 (286)
Q Consensus         4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls--------   72 (286)
                      |+.+.|+.  +..|.++++|++|+|++|+|+.++.. ..+++|++|+|++|+++.++ .+..+++|+.|+++        
T Consensus        38 Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~  116 (266)
T d1p9ag_          38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP  116 (266)
T ss_dssp             CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCcCCCcCHHHhhccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceee
Confidence            44444443  23466677777777777777766532 34666666666666666543 34455555555555        


Q ss_pred             ----------------CCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHH
Q 023142           73 ----------------NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVI  136 (286)
Q Consensus        73 ----------------~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l  136 (286)
                                      +|.++.+++..+..+++|+.+++++|+|+.+++ ..|..+++|++|+|++|+|+.+|.    .+
T Consensus       117 ~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~lp~----~~  191 (266)
T d1p9ag_         117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GF  191 (266)
T ss_dssp             SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred             ccccccccccccccccccccceeccccccccccchhcccccccccccCc-cccccccccceeecccCCCcccCh----hH
Confidence                            455555555555556666666666666666655 456666667777777766666665    45


Q ss_pred             hhCCCCcEEeCCCCCh
Q 023142          137 HKLKSLRVLDFKKVKN  152 (286)
Q Consensus       137 ~~l~~L~~L~l~~n~~  152 (286)
                      ..+++|++|++++|++
T Consensus       192 ~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         192 FGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTCCCSEEECCSCCB
T ss_pred             CCCCCCCEEEecCCCC
Confidence            5666666777766654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.6e-20  Score=151.60  Aligned_cols=164  Identities=22%  Similarity=0.307  Sum_probs=126.5

Q ss_pred             CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142           14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L   93 (286)
                      ....+.+++.|++++|.++.+++ +..+++|++|++++|+++.++.+.++++|++|++++|.+..+++  +.+++.|+.|
T Consensus        35 ~~~~l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L  111 (199)
T d2omxa2          35 SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL  111 (199)
T ss_dssp             CHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             CHHHhcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccCcccccCCcccccccccccccccccc--cccccccccc
Confidence            33456788899999998888765 45688999999999998888778888999999999998888753  5688889999


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK  173 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  173 (286)
                      ++++|.+..++.   +..+++|+.|++++|++..++.     +..+++|+.|++.+|.+..++                 
T Consensus       112 ~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----l~~~~~L~~L~l~~n~l~~l~-----------------  166 (199)
T d2omxa2         112 TLFNNQITDIDP---LKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSNQVTDLK-----------------  166 (199)
T ss_dssp             ECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCG-----------------
T ss_pred             cccccccccccc---cchhhhhHHhhhhhhhhccccc-----ccccccccccccccccccCCc-----------------
Confidence            998888877653   7788889999999998887754     678888999999888754321                 


Q ss_pred             hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHH
Q 023142          174 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEE  221 (286)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~  221 (286)
                                     ....+++|+.+++++|+++.++ .++.+++|++
T Consensus       167 ---------------~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~  198 (199)
T d2omxa2         167 ---------------PLANLTTLERLDISSNKVSDIS-VLAKLTNLES  198 (199)
T ss_dssp             ---------------GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred             ---------------cccCCCCCCEEECCCCCCCCCc-cccCCCCCCc
Confidence                           1123567888888888887765 4666766653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.6e-18  Score=139.46  Aligned_cols=142  Identities=23%  Similarity=0.275  Sum_probs=125.0

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      .++.+.|++..++..+++|++|++++|+|+.+++ +..+++|++|++++|.+..++.+.+++.|+.|++++|.+..+++ 
T Consensus        46 ~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-  123 (199)
T d2omxa2          46 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-  123 (199)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-
T ss_pred             ECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccccccccccc-
Confidence            3455566777778889999999999999999886 67799999999999999999889999999999999999988743 


Q ss_pred             cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                       +..+++|+.|++++|++..++   .+..+++|+.|++.+|+++.++.     ++.+++|++|++++|+++++
T Consensus       124 -~~~l~~L~~L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~l~~-----l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         124 -LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLNFSSNQVTDLKP-----LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCC
T ss_pred             -cchhhhhHHhhhhhhhhcccc---cccccccccccccccccccCCcc-----ccCCCCCCEEECCCCCCCCC
Confidence             568999999999999998875   48889999999999999998874     78999999999999987643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2e-19  Score=154.86  Aligned_cols=200  Identities=18%  Similarity=0.209  Sum_probs=121.8

Q ss_pred             CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEecc-CCcCcccCCccccCCCCccEEE
Q 023142           19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIIN-NNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      +.+++|+|++|+|+.+| ..+.++++|++|++++|.+..++  .+..++.+..+... .|.++.+++..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            56889999999999888 46778889999999998887664  34555666665443 4456666665566666666666


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH--
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK--  172 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~--  172 (286)
                      +++|.+..++. ..+..+++|+.+++++|.++.++..   .+..+++|+.|++++|.+..++.  ..|.+......+.  
T Consensus       112 l~~n~~~~~~~-~~~~~~~~L~~l~l~~N~l~~i~~~---~f~~~~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         112 LDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECC
T ss_pred             cCCcccccccc-cccchhcccchhhhccccccccChh---HhccccchhhcccccCcccccch--hhhccccccchhhhh
Confidence            66666665554 4555566666666666666666543   45556666666666666543211  1122221110000  


Q ss_pred             hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142          173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~  230 (286)
                      ........+..+      ..+.+++.++++.|++..++ ..++.+++|+.|++++|.+.
T Consensus       186 ~N~l~~i~~~~f------~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         186 QNRVAHVHPHAF------RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             SSCCCEECTTTT------TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hccccccChhHh------hhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            000011112222      24567888888888888555 56778888888888777663

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-17  Score=140.60  Aligned_cols=138  Identities=21%  Similarity=0.278  Sum_probs=126.1

Q ss_pred             CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP   88 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~   88 (286)
                      +..|.++++|++|++++|.+..++ ..+..+.+|+.+++++|.|+.++  .|..+++|+.|++++|+++.+++..|.+++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc
Confidence            556888999999999999998776 55667889999999999999986  588999999999999999999999999999


Q ss_pred             CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      +|+.+++++|+++.+++ ..|.++++|++|++++|.+..++..   .+..+++|++|++++|++.
T Consensus       178 ~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~---~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEEECCSSCEE
T ss_pred             ccchhhhhhccccccCh-hHhhhhhhccccccccccccccccc---ccccccccCEEEecCCCCC
Confidence            99999999999999876 6899999999999999999988765   7899999999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.70  E-value=1.8e-20  Score=163.55  Aligned_cols=209  Identities=17%  Similarity=0.226  Sum_probs=154.7

Q ss_pred             CccEEEeeCCCCc---cccccccCCCCcCEEeccC-CCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142           20 KERELDLRGNKIA---VIENLGATEDQFDTIDLSD-NEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        20 ~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~-N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L   93 (286)
                      +++.|+|++|.++   .+|..++++++|++|+|++ |.++ .+| .|+++++|++|+|++|++.++++..+..++.|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6889999999887   5788888999999999986 7877 677 78999999999999999999888888889999999


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCC-cEEeCCCCChHHHHHHHHHhhcch-----
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSL-RVLDFKKVKNKERMEAASLFASEE-----  166 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~~~~~~~~-----  166 (286)
                      ++++|.+....+ ..+.+++.|+.+++++|.+. .+|.    .+..+..+ +.++++.|.+......  .+....     
T Consensus       131 ~l~~N~~~~~~p-~~l~~l~~L~~l~l~~n~l~~~ip~----~~~~l~~l~~~l~~~~n~l~~~~~~--~~~~l~~~~l~  203 (313)
T d1ogqa_         131 DFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVD  203 (313)
T ss_dssp             ECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSSEEEEECCG--GGGGCCCSEEE
T ss_pred             ccccccccccCc-hhhccCcccceeecccccccccccc----ccccccccccccccccccccccccc--ccccccccccc
Confidence            999998776554 57889999999999999987 5676    56677765 7888888876432111  011110     


Q ss_pred             ----------hHHH--HHhhhcccCCCCCCC-CCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcC
Q 023142          167 ----------MEEE--AKKESMKTLMPVEVP-NVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSG  232 (286)
Q Consensus       167 ----------~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g  232 (286)
                                +...  ...+....+....+. .++..+.+.+++.+++++|+++ .+|..|+++++|++|++++|+++ |
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~-g  282 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-G  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-E
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc-c
Confidence                      0000  000000000000001 1233356788999999999999 89999999999999999999995 7


Q ss_pred             CCCC
Q 023142          233 QLPA  236 (286)
Q Consensus       233 ~iP~  236 (286)
                      .||.
T Consensus       283 ~iP~  286 (313)
T d1ogqa_         283 EIPQ  286 (313)
T ss_dssp             ECCC
T ss_pred             cCCC
Confidence            8985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.70  E-value=6.4e-21  Score=166.38  Aligned_cols=211  Identities=17%  Similarity=0.175  Sum_probs=149.1

Q ss_pred             CCcCEEeccCCCCCC---CC-CCCCCCCCCeEeccC-CcCcc-cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCc
Q 023142           42 DQFDTIDLSDNEIVK---LE-NMPHLNRLGTLIINN-NRITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKL  115 (286)
Q Consensus        42 ~~L~~L~Ls~N~l~~---i~-~~~~l~~L~~L~Ls~-N~l~~-l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L  115 (286)
                      .+++.|+|++|.+..   +| .++.+++|++|+|++ |++++ +|+. +.++++|++|+|++|+|.++++ ..+..+..|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhcccccccccc-ccccchhhh
Confidence            468999999999984   55 799999999999986 88885 6554 5799999999999999999876 678899999


Q ss_pred             cEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChHH-HHHHHHHhhcchh-H------------HHHHhhhcccC-
Q 023142          116 QFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNKE-RMEAASLFASEEM-E------------EEAKKESMKTL-  179 (286)
Q Consensus       116 ~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~-~------------~~~~~~~~~~~-  179 (286)
                      +.+++++|.+. .+|.    .+..++.|+++++++|.+.. ++.....+..... .            ........... 
T Consensus       128 ~~l~l~~N~~~~~~p~----~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~  203 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD  203 (313)
T ss_dssp             CEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE
T ss_pred             cccccccccccccCch----hhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999887 4566    68999999999999998642 1111111111100 0            00000000000 


Q ss_pred             -CCCCC-CCCChh-hhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCccccccccc
Q 023142          180 -MPVEV-PNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEK  256 (286)
Q Consensus       180 -~~~~~-~~~~~~-~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~~~  256 (286)
                       ..... ..++.. +.+.+++.++++.+.+...++.++.+++|+.|++++|++. |.||..+........++.-.++-.+
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~-g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCccCeec-ccCChHHhCCCCCCEEECcCCcccc
Confidence             00000 011222 4667889999999998855667889999999999999995 7999999887766666655554433


Q ss_pred             ccc
Q 023142          257 MVP  259 (286)
Q Consensus       257 ~~~  259 (286)
                      ..+
T Consensus       283 ~iP  285 (313)
T d1ogqa_         283 EIP  285 (313)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.6e-17  Score=135.49  Aligned_cols=139  Identities=28%  Similarity=0.326  Sum_probs=99.5

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCcc
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI   83 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~   83 (286)
                      ++.+.|+...++..+++|++|++++|+|+.++. +..+++|++|++++|+|+.++.+..+++|+.|++++|.+..++.  
T Consensus        53 l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~--  129 (210)
T d1h6ta2          53 ANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING--  129 (210)
T ss_dssp             CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG--
T ss_pred             CcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccccccccccccccccccccccccc--
Confidence            344455556667777777778887777777764 34577777788877777777777777777777777777766642  


Q ss_pred             ccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142           84 GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~  153 (286)
                      +..++.++.+++++|.++..+.   +..+++|+++++++|+++.++.     +..+++|+.|++++|.++
T Consensus       130 l~~l~~l~~l~~~~n~l~~~~~---~~~l~~L~~l~l~~n~l~~i~~-----l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccc---cccccccccccccccccccccc-----ccCCCCCCEEECCCCCCC
Confidence            3567777777777777776543   5667778888888888777654     567788888888887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.3e-17  Score=135.28  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=102.0

Q ss_pred             CCccEEEeeCCCCcc-cc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           19 IKERELDLRGNKIAV-IE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~-l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      +++++|+|++|+|+. ++ ..|..+++|+.|+|++|.+..++  .|..+++|++|+|++|+|+.+++..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            689999999999985 54 66788999999999999999875  689999999999999999999999999999999999


Q ss_pred             eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142           95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      |++|+|+.+++ ..|..+++|++|+|++|++.....
T Consensus       109 L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_         109 LYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccccccCH-HHhcCCcccccccccccccccccc
Confidence            99999999988 789999999999999999986544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.8e-17  Score=135.30  Aligned_cols=136  Identities=29%  Similarity=0.350  Sum_probs=120.7

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      .|+.+.|+..+.+.++++|++|++++|+|+.++. +..+++|+.|++++|.+..++.+..++.++.+++++|.+++.+. 
T Consensus        74 ~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~-  151 (210)
T d1h6ta2          74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-  151 (210)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             eCCCccccCccccccCcccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-
Confidence            4566677777778999999999999999999985 56699999999999999998889999999999999999987643 


Q ss_pred             cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCC
Q 023142           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~  149 (286)
                       +..+++|+.+++++|+++++++   ++++++|+.|++++|+++.++.     +..+++|++|++++
T Consensus       152 -~~~l~~L~~l~l~~n~l~~i~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         152 -LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEEEEE
T ss_pred             -cccccccccccccccccccccc---ccCCCCCCEEECCCCCCCCChh-----hcCCCCCCEEEccC
Confidence             4578999999999999998764   8899999999999999998864     78999999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=2.5e-18  Score=149.08  Aligned_cols=204  Identities=16%  Similarity=0.197  Sum_probs=147.5

Q ss_pred             CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142           18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV   94 (286)
Q Consensus        18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~   94 (286)
                      .+++++|++++|+|+.+|. .+.++++|++|++++|.+..++  .|..+++|++|++++|+++.++...+   +.+..|.
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~---~~l~~L~  106 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELR  106 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEE
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchh---hhhhhhh
Confidence            3679999999999999984 6788999999999999999884  58899999999999999998876433   4566777


Q ss_pred             eecCcCCCCCC-------------------------CccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCC
Q 023142           95 LTNNRLVNLVE-------------------------IDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK  149 (286)
Q Consensus        95 Ls~N~i~~~~~-------------------------~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~  149 (286)
                      +..|.+..++.                         ...+..+++|+.+++++|.+..++..      .+++|+.|++++
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~------~~~~L~~L~l~~  180 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDG  180 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTT
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc------cCCccCEEECCC
Confidence            77776665432                         12355678899999999999888762      467889999988


Q ss_pred             CChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCC--ChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023142          150 VKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNV--SEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEK  227 (286)
Q Consensus       150 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N  227 (286)
                      |.......  ..|.+....      ....+....+..+  .....+.+|+.+++++|+|+.||.+++++++|++|++++|
T Consensus       181 n~~~~~~~--~~~~~~~~l------~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         181 NKITKVDA--ASLKGLNNL------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             SCCCEECT--GGGTTCTTC------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CcCCCCCh--hHhhccccc------cccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC
Confidence            87543211  112222111      1111111111111  1124678899999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCcc
Q 023142          228 VLKSGQLPADLKI  240 (286)
Q Consensus       228 ~l~~g~iP~~~~~  240 (286)
                      +++  .|+...+.
T Consensus       253 ~i~--~i~~~~f~  263 (305)
T d1xkua_         253 NIS--AIGSNDFC  263 (305)
T ss_dssp             CCC--CCCTTSSS
T ss_pred             ccC--ccChhhcc
Confidence            994  68765543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.6e-18  Score=143.04  Aligned_cols=175  Identities=19%  Similarity=0.232  Sum_probs=119.2

Q ss_pred             CCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142           11 KSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKL   90 (286)
Q Consensus        11 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L   90 (286)
                      +...+..+.+|+.|++.+|.|+.+++ +..+++|++|++++|.++.++.+..+++|+++++++|.++.++.  +..+++|
T Consensus        33 d~~~~~~l~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L  109 (227)
T d1h6ua2          33 DTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSI  109 (227)
T ss_dssp             SEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTC
T ss_pred             CcCCHHHcCCcCEEECCCCCCCcchh-HhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccc
Confidence            33344456678888888888887754 55688888888888888877667888888888888888877742  4577888


Q ss_pred             cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142           91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEE  170 (286)
Q Consensus        91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  170 (286)
                      +.++++++.+..+..   +...+.+..+.++++.+.....     +..+++|+.|++++|.+....              
T Consensus       110 ~~l~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~~~~~~--------------  167 (227)
T d1h6ua2         110 KTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLT--------------  167 (227)
T ss_dssp             CEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCG--------------
T ss_pred             cccccccccccccch---hccccchhhhhchhhhhchhhh-----hccccccccccccccccccch--------------
Confidence            888888887776543   5566777777777777665443     566777777777777543210              


Q ss_pred             HHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023142          171 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL  229 (286)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l  229 (286)
                                        ....+.+|+.+++++|+++.+++ ++++++|++|++++|++
T Consensus       168 ------------------~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         168 ------------------PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             ------------------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred             ------------------hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcC
Confidence                              00124456666666666665543 56666666666666666

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.9e-18  Score=153.53  Aligned_cols=175  Identities=19%  Similarity=0.233  Sum_probs=125.1

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH   91 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~   91 (286)
                      ...+..+++++.+++++|.++.++.. ..+++|++|++++|.++.++.+..+++|+.|++++|+++++++  +..+++|+
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~  266 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT  266 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             ccccccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCC
Confidence            34566677888888888888877653 3467888888888888887777788888888888888887754  45778888


Q ss_pred             EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHH
Q 023142           92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEA  171 (286)
Q Consensus        92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  171 (286)
                      .|++++|.++.+++   +..++.++.+.+..|.++.++.     +..++++++|++++|.+.++.               
T Consensus       267 ~L~l~~~~l~~~~~---~~~~~~l~~l~~~~n~l~~~~~-----~~~~~~l~~L~ls~n~l~~l~---------------  323 (384)
T d2omza2         267 ELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDIS---------------  323 (384)
T ss_dssp             EEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCG---------------
T ss_pred             EeeccCcccCCCCc---cccccccccccccccccccccc-----cchhcccCeEECCCCCCCCCc---------------
Confidence            88888888887654   6677778888888887776653     567778888888877654321               


Q ss_pred             HhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142          172 KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK  230 (286)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~  230 (286)
                                       ....+++|+.+++++|+|+.++ .++++++|++|++++|+++
T Consensus       324 -----------------~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         324 -----------------PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             -----------------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             -----------------ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCC
Confidence                             0112445667777777666655 4666777777777777663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.1e-16  Score=120.89  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=94.0

Q ss_pred             CEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCc
Q 023142           45 DTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS  124 (286)
Q Consensus        45 ~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~  124 (286)
                      ++|+|++|.|+.++.+..+++|++|++++|+|+.+|+. +..+++|+.|++++|.|+.++.   +..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~---~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc---cccccccCeEECCCCc
Confidence            58999999999999999999999999999999999765 4689999999999999999864   8899999999999999


Q ss_pred             CCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142          125 ITKKPNYRLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus       125 l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      ++.++...  .+..+++|++|++++|++..
T Consensus        77 i~~~~~~~--~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQ--PLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTG--GGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCch--hhcCCCCCCEEECCCCcCCc
Confidence            99887532  57899999999999998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.65  E-value=1.4e-19  Score=148.08  Aligned_cols=145  Identities=30%  Similarity=0.370  Sum_probs=98.0

Q ss_pred             cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCC-CCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142           15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENM-PHLNRLGTLIINNNRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L   93 (286)
                      +..+++|+.|+|++|+|+.++. +..+++|++|+|++|.|+.++.+ ..+++|++|++++|+|+.+++  +..+++|+.|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~--~~~l~~L~~L  120 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVL  120 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH--HHHHHHSSEE
T ss_pred             HhcccccceeECcccCCCCccc-ccCCccccChhhccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            5556777777887777777764 55577777888877777777643 334567777887777777632  3467777788


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC-------CCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK-------PNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF  162 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i-------p~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  162 (286)
                      ++++|+|+.++.+..+..+++|+.|++++|++...       +.++...+..+|+|+.||.......++..|+.++
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~A~~~~  196 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVAR  196 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTHHHHHH
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHHHHHhh
Confidence            88887777765444577777788888887776532       1223334677777877777666666666555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=9.8e-16  Score=135.72  Aligned_cols=142  Identities=21%  Similarity=0.292  Sum_probs=107.9

Q ss_pred             ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142            3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN   82 (286)
Q Consensus         3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~   82 (286)
                      .++.+.+++.+.+..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++.+..++.++.+.++.|++++++. 
T Consensus       225 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-  302 (384)
T d2omza2         225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-  302 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-
T ss_pred             ECCCCCCCCcchhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccc-
Confidence            3455667777778889999999999999998776 44588999999999998887777777778888888887777642 


Q ss_pred             cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                       +..+++++.|++++|+|+++++   +..+++|++|++++|+++.++.     +..+++|++|++++|+++++
T Consensus       303 -~~~~~~l~~L~ls~n~l~~l~~---l~~l~~L~~L~L~~n~l~~l~~-----l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         303 -ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVSS-----LANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             -GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCBC
T ss_pred             -cchhcccCeEECCCCCCCCCcc---cccCCCCCEEECCCCCCCCChh-----HcCCCCCCEEECCCCcCCCC
Confidence             3567777778888777777653   6667777888888777777653     56777788888877776544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.4e-16  Score=124.43  Aligned_cols=120  Identities=24%  Similarity=0.323  Sum_probs=101.4

Q ss_pred             CccccccccCCCCcCEEeccCCCCCCCCCC-CCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccC
Q 023142           31 IAVIENLGATEDQFDTIDLSDNEIVKLENM-PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL  109 (286)
Q Consensus        31 l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l  109 (286)
                      |...|. +.++..+++|+|++|+|+.++.+ ..+++|+.|+|++|+|+.++.  +..+++|++|++++|+|+.+++ ..+
T Consensus         8 i~~~~~-~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~-~~~   83 (162)
T d1a9na_           8 IEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGE-GLD   83 (162)
T ss_dssp             HHTSCE-EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECS-CHH
T ss_pred             HhhhHh-ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCc-ccc
Confidence            333443 34577899999999999999854 779999999999999999943  5789999999999999999987 567


Q ss_pred             CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142          110 TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM  156 (286)
Q Consensus       110 ~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~  156 (286)
                      ..+++|+.|++++|+++.++...  .+..+++|++|++++|++...+
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~--~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccccccceecccccccccccc--ccccccccchhhcCCCcccccc
Confidence            78999999999999999886521  5789999999999999876543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=5.3e-15  Score=127.71  Aligned_cols=138  Identities=21%  Similarity=0.224  Sum_probs=118.2

Q ss_pred             CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142           12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK   89 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~   89 (286)
                      ...+..+++|+.+++++|.++.+|...  +++|+.|++++|.+...+  .|..++.++.|++++|.++++++..+.++++
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             ccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            445777889999999999999888654  689999999999988653  6889999999999999999999888889999


Q ss_pred             ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHH---HHhhCCCCcEEeCCCCChH
Q 023142           90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY---VIHKLKSLRVLDFKKVKNK  153 (286)
Q Consensus        90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~---~l~~l~~L~~L~l~~n~~~  153 (286)
                      |++|+|++|+|+.+|.  .|..+++|++|+|++|+|+.++...+.   .....++|+.|++++|++.
T Consensus       221 L~~L~L~~N~L~~lp~--~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         221 LRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCEEECCSSCCSSCCT--TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ceeeeccccccccccc--ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999999999999976  789999999999999999988653211   2346788999999999854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.55  E-value=1.6e-17  Score=135.73  Aligned_cols=132  Identities=21%  Similarity=0.276  Sum_probs=112.1

Q ss_pred             CCCccEEEeeCC--CCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142           18 AIKERELDLRGN--KIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL   95 (286)
Q Consensus        18 l~~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L   95 (286)
                      ...++.++++++  .++.++..+..+++|++|+|++|+|+.++.+..+++|+.|+|++|+|+.++. .+..+++|++|++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l  100 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI  100 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEEC
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccc-ccccccccccccc
Confidence            445667777765  5677888888899999999999999999989999999999999999999864 3345678999999


Q ss_pred             ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ++|.|+.+++   +..+++|+.|++++|+|+.++..  ..+..+++|+.|++++|++...
T Consensus       101 ~~N~i~~l~~---~~~l~~L~~L~L~~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         101 SYNQIASLSG---IEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEECCCHHH---HHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccc---ccccccccccccccchhcccccc--ccccCCCccceeecCCCccccC
Confidence            9999998753   77899999999999999987541  2688999999999999987654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.4e-17  Score=135.33  Aligned_cols=184  Identities=17%  Similarity=0.203  Sum_probs=123.8

Q ss_pred             CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCeEeccC-CcCcccCCccccCCCCccEE
Q 023142           19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTL   93 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L   93 (286)
                      +++++|++++|+|+.+|. .|.++++|++|++++|.+.. ++  .|.+++.++.+.+.. |.+..+++..|..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            468888888888888874 56778888888888888764 33  467788888887754 67877777777788888888


Q ss_pred             EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCC-CCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142           94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLK-SLRVLDFKKVKNKERMEAASLFASEEMEEEAK  172 (286)
Q Consensus        94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  172 (286)
                      ++++|.++..+....+..+..+..+..+++.+..++..   .+..++ .++.|++.+|.+..+..               
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~---~~~~~~~~l~~L~l~~n~l~~i~~---------------  170 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHN---------------  170 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECT---------------
T ss_pred             ccchhhhccccccccccccccccccccccccccccccc---ccccccccceeeeccccccccccc---------------
Confidence            88888887766533444566666667777777776553   344443 67778888876543210               


Q ss_pred             hhhcccCCCCCCCCCChhhhccC-CccCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142          173 KESMKTLMPVEVPNVSEEEEQQT-PKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADL  238 (286)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~-l~~l~ls~n~l~~ip~-~i~~~~~L~~l~l~~N~l~~g~iP~~~  238 (286)
                               ..+.       ..+ .+.+.+..|+++.||. .+.++++|++|++++|.++  .+|...
T Consensus       171 ---------~~~~-------~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~--~l~~~~  220 (242)
T d1xwdc1         171 ---------CAFN-------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLPSYG  220 (242)
T ss_dssp             ---------TTTT-------TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC--CCCSSS
T ss_pred             ---------cccc-------chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC--ccCHHH
Confidence                     0000       112 2233456666666663 4677778888888777773  566543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=111.98  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             CCCCCccEEEeeCCCCccccccccCCCCcCEEeccCC-CCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142           16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDN-EIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT   92 (286)
Q Consensus        16 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~   92 (286)
                      ..+.....++++++.+..+|..+..+++|+.|++++| .|+.++  .|.++++|+.|++++|+|+.+++..|..+++|++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            4445556677777777777766666777777777655 477664  5777777777777777777777777777777777


Q ss_pred             EEeecCcCCCCCCCccCCCCCCccEEEecCCcCC
Q 023142           93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  126 (286)
                      |+|++|+|+.++. ..|..+ .|+.|+|++|++.
T Consensus        85 L~Ls~N~l~~l~~-~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSW-KTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCS-TTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCcccCh-hhhccc-cccccccCCCccc
Confidence            7777777777776 455443 5777777777775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=2.8e-14  Score=118.12  Aligned_cols=141  Identities=21%  Similarity=0.219  Sum_probs=109.6

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc-
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN-   82 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~-   82 (286)
                      +..+.|++...+.++++|+.|++++|.++.+++ +..+++++++++++|.++.++.+..+++|+.+.++++.+..+.+. 
T Consensus        48 l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~  126 (227)
T d1h6ua2          48 AFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA  126 (227)
T ss_dssp             CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGT
T ss_pred             CCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccccccccchhc
Confidence            455667777778899999999999999998765 566899999999999999988888999999999998887664321 


Q ss_pred             -------------------cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCc
Q 023142           83 -------------------IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR  143 (286)
Q Consensus        83 -------------------~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~  143 (286)
                                         .+..+++|++|++++|.++.+++   +.++++|+.|++++|+++.++.     ++.+++|+
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~l~~l~~-----l~~l~~L~  198 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLPNLI  198 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCC
T ss_pred             cccchhhhhchhhhhchhhhhccccccccccccccccccchh---hcccccceecccCCCccCCChh-----hcCCCCCC
Confidence                               12355667777777777766543   6777788888888888777654     57778888


Q ss_pred             EEeCCCCChH
Q 023142          144 VLDFKKVKNK  153 (286)
Q Consensus       144 ~L~l~~n~~~  153 (286)
                      +|++++|+++
T Consensus       199 ~L~Ls~N~lt  208 (227)
T d1h6ua2         199 EVHLKNNQIS  208 (227)
T ss_dssp             EEECTTSCCC
T ss_pred             EEECcCCcCC
Confidence            8888887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.2e-14  Score=108.92  Aligned_cols=108  Identities=17%  Similarity=0.129  Sum_probs=95.7

Q ss_pred             CCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccE
Q 023142           40 TEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF  117 (286)
Q Consensus        40 ~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~  117 (286)
                      .+...+.++.+++.+..+| .+..+++|+.|++++| .|+.+++..|.++++|+.|++++|+|+.+++ ..|.++++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccccccc
Confidence            3556678999999998886 7889999999999876 5999999999999999999999999999987 78999999999


Q ss_pred             EEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142          118 LSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN  152 (286)
Q Consensus       118 L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~  152 (286)
                      |+|++|+|+.+|..    +....+|+.|++++|++
T Consensus        85 L~Ls~N~l~~l~~~----~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALESLSWK----TVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSCCCST----TTCSCCCCEEECCSSCC
T ss_pred             eeccCCCCcccChh----hhccccccccccCCCcc
Confidence            99999999999884    33455799999999986

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=107.79  Aligned_cols=139  Identities=20%  Similarity=0.183  Sum_probs=95.8

Q ss_pred             CCCcCCCCCccEEEeeC-CCCcccc-ccccCCCCcCEEeccCCCCCCCCCC---CCCCCCCeEeccCCcCcccCCccccC
Q 023142           12 SPHFFNAIKERELDLRG-NKIAVIE-NLGATEDQFDTIDLSDNEIVKLENM---PHLNRLGTLIINNNRITRINPNIGEF   86 (286)
Q Consensus        12 ~~~~~~l~~L~~L~Ls~-n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~~   86 (286)
                      +..|.++++++++.+.+ |.+..++ ..+..+++|++|++++|.+..++.+   ..+..+..+..+++++..++...|.+
T Consensus        71 ~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~  150 (242)
T d1xwdc1          71 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG  150 (242)
T ss_dssp             SSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccc
Confidence            44577788888888764 6777655 5677788999999999888876543   34455555556666777777666665


Q ss_pred             CC-CccEEEeecCcCCCCCCCccCCCCCCccEE-EecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142           87 LP-KLHTLVLTNNRLVNLVEIDPLTSLPKLQFL-SLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus        87 l~-~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L-~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ++ .+..|++++|+++.++. ..+ ..+++..+ ++.+|+++.+|..   .|..+++|++|++++|+++.+
T Consensus       151 ~~~~l~~L~l~~n~l~~i~~-~~~-~~~~l~~~~~l~~n~l~~l~~~---~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQEIHN-CAF-NGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             SBSSCEEEECCSSCCCEECT-TTT-TTCCEEEEECTTCTTCCCCCTT---TTTTSCCCSEEECTTSCCCCC
T ss_pred             ccccceeeeccccccccccc-ccc-cchhhhccccccccccccccHH---HhcCCCCCCEEECCCCcCCcc
Confidence            54 67778888888877765 334 33444444 4667777777664   567778888888888876644

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.18  E-value=1.2e-10  Score=100.87  Aligned_cols=124  Identities=23%  Similarity=0.357  Sum_probs=93.8

Q ss_pred             CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142           19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN   98 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N   98 (286)
                      .++++|+|+++.++.+|+.   +++|++|++++|+|+.+|..  +.+|+.|++++|+++.++.    -.+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhh----hcccccccccccc
Confidence            3578999999999999864   56889999999999988853  4688999999999888753    1246899999999


Q ss_pred             cCCCCCCCccCCCCCCccEEEecCCcCCCCCCch---------------HHHHhhCCCCcEEeCCCCChHH
Q 023142           99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR---------------LYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~---------------~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      .|..+|.   ++.+++|+.|++++|.+...+...               ...+..++.++.+.+..|....
T Consensus       109 ~l~~lp~---~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         109 QLEKLPE---LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCC---CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc---hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccc
Confidence            9988875   567888999999888776443210               0024567778888888877543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.10  E-value=3.9e-10  Score=97.42  Aligned_cols=118  Identities=21%  Similarity=0.289  Sum_probs=92.1

Q ss_pred             cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCcc
Q 023142            4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI   83 (286)
Q Consensus         4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~   83 (286)
                      |+...++..|.+  +++|++|++++|+|+.+|..   +.+|+.|++++|.++.++.+.  +.|++|++++|.++.+|.  
T Consensus        45 Ls~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~--  115 (353)
T d1jl5a_          45 LNNLGLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--  115 (353)
T ss_dssp             CTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--
T ss_pred             eCCCCCCCCCCC--CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhhc--cccccccccccccccccc--
Confidence            344445554432  57899999999999999976   458999999999999887553  469999999999999975  


Q ss_pred             ccCCCCccEEEeecCcCCCCCCC-----------------ccCCCCCCccEEEecCCcCCCCCC
Q 023142           84 GEFLPKLHTLVLTNNRLVNLVEI-----------------DPLTSLPKLQFLSLLDNSITKKPN  130 (286)
Q Consensus        84 ~~~l~~L~~L~Ls~N~i~~~~~~-----------------~~l~~l~~L~~L~L~~N~l~~ip~  130 (286)
                      +..+++|++|++++|.+...+..                 ..+..++.++.+.+++|.+..++.
T Consensus       116 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         116 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccc
Confidence            35789999999999988765541                 234567788889999988877654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-12  Score=109.87  Aligned_cols=135  Identities=12%  Similarity=0.150  Sum_probs=90.9

Q ss_pred             cCCCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCC--CCCCCCCCCCeEeccCC-cCcccC-CccccCCC
Q 023142           15 FFNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNN-RITRIN-PNIGEFLP   88 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~   88 (286)
                      .....+|++|+++++.++  .++..+..+++|++|+++++.+...  ..++.+++|++|+++++ .+++.. ..++..++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            345668999999999886  3566777889999999999988742  36778899999999985 666422 23345788


Q ss_pred             CccEEEeecC-cCCCCCCCccC-CCCCCccEEEecCCc--CCCCCCchHHHHhhCCCCcEEeCCCCC
Q 023142           89 KLHTLVLTNN-RLVNLVEIDPL-TSLPKLQFLSLLDNS--ITKKPNYRLYVIHKLKSLRVLDFKKVK  151 (286)
Q Consensus        89 ~L~~L~Ls~N-~i~~~~~~~~l-~~l~~L~~L~L~~N~--l~~ip~~~~~~l~~l~~L~~L~l~~n~  151 (286)
                      +|++|+++++ .++...-...+ ..++.|+.|+++++.  ++.  ......+..+++|++|++++|.
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~--~~l~~l~~~~~~L~~L~L~~~~  186 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSV  186 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccccc--cccccccccccccccccccccc
Confidence            9999999886 34421100112 235678888887642  331  1111145678888888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.7e-12  Score=98.78  Aligned_cols=127  Identities=23%  Similarity=0.235  Sum_probs=84.9

Q ss_pred             CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCC--ccccCCCCccEEEee
Q 023142           20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLT   96 (286)
Q Consensus        20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls   96 (286)
                      ..+.|+++++..  .+. +..+..+..+...++.+..++ .+..+++|++|+|++|+|+.+++  ..+..+++|+.|+++
T Consensus        23 ~~~~Ldls~l~~--~~~-l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          23 SQQALDLKGLRS--DPD-LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             SSCCBCCCCCSS--CTT-TTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             hhCeeecccCCC--Cch-hhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc
Confidence            345566655432  222 122333333344443333333 23568899999999999998753  445678999999999


Q ss_pred             cCcCCCCCCCccCCCCCCccEEEecCCcCCCCC----CchHHHHhhCCCCcEEeCCCC
Q 023142           97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP----NYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip----~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      +|.|+.++++ .+.....|+.|++++|+++...    .|+...+..+|+|+.||....
T Consensus       100 ~N~i~~l~~l-~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~v  156 (162)
T d1koha1         100 GNELKSEREL-DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL  156 (162)
T ss_dssp             TSCCCCGGGH-HHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEEC
T ss_pred             cCccccchhh-hhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCCC
Confidence            9999998874 3334557999999999998543    355567889999999986543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.86  E-value=8.9e-11  Score=102.47  Aligned_cols=120  Identities=18%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             CCCCccEEEeecCcCCCCCC----CccCCCCCCccEEEecCCcCCCCCCc-hHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142           86 FLPKLHTLVLTNNRLVNLVE----IDPLTSLPKLQFLSLLDNSITKKPNY-RLYVIHKLKSLRVLDFKKVKNKERMEAAS  160 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~~~~----~~~l~~l~~L~~L~L~~N~l~~ip~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  160 (286)
                      .++.|+.|++++|.|+....    ...+..+++|+.|++++|+++..... ....+..+++|++|++++|.+......  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~--  261 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA--  261 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH--
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH--
Confidence            34556666666666543100    01344556666666666665421100 011455666666666666665432110  


Q ss_pred             HhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHH-----HHHHHHHH-hcCCHHHHHHHHHHH
Q 023142          161 LFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQI-----IAIKAAIV-NSQTLEEVARLEKVL  229 (286)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l-----~~ip~~i~-~~~~L~~l~l~~N~l  229 (286)
                              .+...+...              ....++.++++.|+|     ..+...+. +++.|+.|++++|.+
T Consensus       262 --------~l~~~l~~~--------------~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         262 --------AVVDAFSKL--------------ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             --------HHHHHHHTC--------------SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             --------HHHHHhhhc--------------cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence                    001100000              012456666666654     45666664 677888888887777

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.85  E-value=4.8e-11  Score=104.19  Aligned_cols=86  Identities=20%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             cCCCCCccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCCC------------CCCCCCCCCeEeccCCcCc
Q 023142           15 FFNAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKLE------------NMPHLNRLGTLIINNNRIT   77 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i~------------~~~~l~~L~~L~Ls~N~l~   77 (286)
                      +.....|+.|+|++|.|..     +...+...++|+.|+++++.+....            .+..+++|+.|+|++|.++
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            4445667777777776642     3334445566666666665443221            1344566666666666665


Q ss_pred             ccCC----ccccCCCCccEEEeecCcC
Q 023142           78 RINP----NIGEFLPKLHTLVLTNNRL  100 (286)
Q Consensus        78 ~l~~----~~~~~l~~L~~L~Ls~N~i  100 (286)
                      ....    ..+..+++|++|++++|.+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccchhhhhcccccchheecccccc
Confidence            4211    1223455666666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.3e-10  Score=89.39  Aligned_cols=93  Identities=20%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             eCCCCccccccccCCCCcCEEeccCCCCCCCCC----CCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCC
Q 023142           27 RGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN----MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVN  102 (286)
Q Consensus        27 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~  102 (286)
                      ..+.+..++.....+++|++|+|++|+|+.++.    +..+++|+.|+|++|+|+.+++..+.....|+.|++++|.++.
T Consensus        50 ~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          50 RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            333333445555678999999999999998753    4578999999999999999977444456689999999999986


Q ss_pred             CCCC------ccCCCCCCccEEE
Q 023142          103 LVEI------DPLTSLPKLQFLS  119 (286)
Q Consensus       103 ~~~~------~~l~~l~~L~~L~  119 (286)
                      ...-      ..+..+|+|+.||
T Consensus       130 ~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         130 TFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcccchhHHHHHHHHCCCCCEEC
Confidence            5430      1256789999886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-08  Score=86.73  Aligned_cols=133  Identities=18%  Similarity=0.237  Sum_probs=67.2

Q ss_pred             cCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCC-CCCCC--CC-CCCCCCCCeEeccCC-cCcc--cCCccccC
Q 023142           15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDN-EIVKL--EN-MPHLNRLGTLIINNN-RITR--INPNIGEF   86 (286)
Q Consensus        15 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~i--~~-~~~l~~L~~L~Ls~N-~l~~--l~~~~~~~   86 (286)
                      +.++++|++|+++++.++ ..+..+..+++|++|+++++ .++..  .. +..+++|++|+++++ .++.  +.......
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            556778888888888776 33445556778888888774 45422  21 345677777777764 3432  11111122


Q ss_pred             CCCccEEEeecC--cCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142           87 LPKLHTLVLTNN--RLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKV  150 (286)
Q Consensus        87 l~~L~~L~Ls~N--~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n  150 (286)
                      +++|+.|+++++  .++...-...+.++++|++|++++|. ++...   +..+..+++|++|+++++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~---~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC---FQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchh---hhhhcccCcCCEEECCCC
Confidence            345555555543  22211000012345555555555542 33111   013445555555555553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.7e-09  Score=92.00  Aligned_cols=108  Identities=21%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             CCccEEEeeCCCCcc--ccccccCCCCcCEEeccCCCCCCC-----C-CCCCCCCCCeEeccCCcCcccC-----Ccccc
Q 023142           19 IKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN-----PNIGE   85 (286)
Q Consensus        19 ~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~   85 (286)
                      ++|+.|++++|+++.  +...+..++++++|+|++|.|+..     . .+..+++|+.|+|++|.|+...     .....
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            367888888888884  345556678888888888888732     1 3567888888888888886422     11112


Q ss_pred             CCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCC
Q 023142           86 FLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT  126 (286)
Q Consensus        86 ~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~  126 (286)
                      ..++|++|++++|.|+....   ...+..+++|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23578888888888865321   024667888888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.8e-08  Score=86.12  Aligned_cols=138  Identities=18%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             CCCCccEEEeeCCCCccc-----cccccCCCCcCEEeccCCCCCCC--C----C-CCCCCCCCeEeccCCcCcccCC---
Q 023142           17 NAIKERELDLRGNKIAVI-----ENLGATEDQFDTIDLSDNEIVKL--E----N-MPHLNRLGTLIINNNRITRINP---   81 (286)
Q Consensus        17 ~l~~L~~L~Ls~n~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~i--~----~-~~~l~~L~~L~Ls~N~l~~l~~---   81 (286)
                      ....++.+++++|.+...     ...+...+.++.+++++|.++..  .    . ......|+.+++++|.++....   
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            356788889998888632     23344577889999999988632  1    1 2345689999999998876432   


Q ss_pred             -ccccCCCCccEEEeecCcCCCCCC--C-ccC-CCCCCccEEEecCCcCCCCCCch-HHHHhhCCCCcEEeCCCCChHH
Q 023142           82 -NIGEFLPKLHTLVLTNNRLVNLVE--I-DPL-TSLPKLQFLSLLDNSITKKPNYR-LYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus        82 -~~~~~l~~L~~L~Ls~N~i~~~~~--~-~~l-~~l~~L~~L~L~~N~l~~ip~~~-~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                       ..+..+++|++|+|++|.|+....  + ..+ ...+.|++|+|++|.|+...... ...+..+++|++|++++|.+.+
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence             223456789999999999864210  0 122 34677999999999998522111 1157788999999999999865

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=2e-05  Score=60.76  Aligned_cols=114  Identities=12%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             CCCcCEEeccCC-CCCC--C----CCCCCCCCCCeEeccCCcCcccCC----ccccCCCCccEEEeecCcCCCCCC---C
Q 023142           41 EDQFDTIDLSDN-EIVK--L----ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE---I  106 (286)
Q Consensus        41 l~~L~~L~Ls~N-~l~~--i----~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~~~---~  106 (286)
                      .++|+.|+|+++ .+..  +    ..+...+.|++|+|++|.+..-..    ..+...+.|++|++++|.|+.-..   .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455555555542 3331  1    124455566666666666653211    122345677777777777664211   1


Q ss_pred             ccCCCCCCccEEEecCCcCCCCCCc----hHHHHhhCCCCcEEeCCCCChHH
Q 023142          107 DPLTSLPKLQFLSLLDNSITKKPNY----RLYVIHKLKSLRVLDFKKVKNKE  154 (286)
Q Consensus       107 ~~l~~l~~L~~L~L~~N~l~~ip~~----~~~~l~~l~~L~~L~l~~n~~~~  154 (286)
                      ..+...++|++|++++|.+..+...    ....+...++|+.|+++.+....
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~~  145 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA  145 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCchH
Confidence            2466678899999998877765322    12267778999999999887643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.08  E-value=0.00011  Score=56.45  Aligned_cols=108  Identities=11%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             CCCCccEEEeeCC-CCcc-----ccccccCCCCcCEEeccCCCCCCC--C----CCCCCCCCCeEeccCCcCcccCC---
Q 023142           17 NAIKERELDLRGN-KIAV-----IENLGATEDQFDTIDLSDNEIVKL--E----NMPHLNRLGTLIINNNRITRINP---   81 (286)
Q Consensus        17 ~l~~L~~L~Ls~n-~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i--~----~~~~l~~L~~L~Ls~N~l~~l~~---   81 (286)
                      +.+.|++|+|+++ .++.     +-..+...++|++|+|++|.+..-  .    .+...+.|+.|+|++|.|+.-..   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4678999999974 5762     234455678899999999999732  2    34567899999999999986321   


Q ss_pred             -ccccCCCCccEEEeecCcCCCCCC------CccCCCCCCccEEEecCCc
Q 023142           82 -NIGEFLPKLHTLVLTNNRLVNLVE------IDPLTSLPKLQFLSLLDNS  124 (286)
Q Consensus        82 -~~~~~l~~L~~L~Ls~N~i~~~~~------~~~l~~l~~L~~L~L~~N~  124 (286)
                       ..+...+.|++|++++|.+..+..      ...+...+.|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             223566789999999998776542      1234457889999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=8e-05  Score=56.96  Aligned_cols=116  Identities=13%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             CCCCcCEEeccC-CCCCCC------CCCCCCCCCCeEeccCCcCcccCC----ccccCCCCccEEEeecCcCCCCCC---
Q 023142           40 TEDQFDTIDLSD-NEIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE---  105 (286)
Q Consensus        40 ~l~~L~~L~Ls~-N~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~~~---  105 (286)
                      +.+.|++|+|++ +.++.-      ..+..+++|+.|++++|.++.-..    ..+...+.++.+++++|.+..-..   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456666677665 345421      134566777777777777654211    223456778888888877653210   


Q ss_pred             CccCCCCCCccEEEe--cCCcCCCCC-CchHHHHhhCCCCcEEeCCCCChHHH
Q 023142          106 IDPLTSLPKLQFLSL--LDNSITKKP-NYRLYVIHKLKSLRVLDFKKVKNKER  155 (286)
Q Consensus       106 ~~~l~~l~~L~~L~L--~~N~l~~ip-~~~~~~l~~l~~L~~L~l~~n~~~~~  155 (286)
                      ...+...++|+.++|  ++|.+.... ......+...++|+.|+++.+.....
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~~  147 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  147 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcHH
Confidence            124567788887665  456665311 11122677899999999998876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.93  E-value=3.8e-05  Score=58.85  Aligned_cols=110  Identities=16%  Similarity=0.044  Sum_probs=77.0

Q ss_pred             CCCCCccEEEeeC-CCCc-----cccccccCCCCcCEEeccCCCCCCC--C----CCCCCCCCCeEeccCCcCcccCC--
Q 023142           16 FNAIKERELDLRG-NKIA-----VIENLGATEDQFDTIDLSDNEIVKL--E----NMPHLNRLGTLIINNNRITRINP--   81 (286)
Q Consensus        16 ~~l~~L~~L~Ls~-n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~i--~----~~~~l~~L~~L~Ls~N~l~~l~~--   81 (286)
                      .+.++|++|++++ +.++     .+-..+...++|++|++++|.++.-  .    .+...+.++.+++++|.++.-..  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3568899999998 5676     2334455688999999999998742  1    35678999999999999875321  


Q ss_pred             --ccccCCCCccEEEee--cCcCCCCCC---CccCCCCCCccEEEecCCcC
Q 023142           82 --NIGEFLPKLHTLVLT--NNRLVNLVE---IDPLTSLPKLQFLSLLDNSI  125 (286)
Q Consensus        82 --~~~~~l~~L~~L~Ls--~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l  125 (286)
                        ..+...++|+.++|+  +|.+..-..   ...+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              233467788876664  566654110   12455789999999987653