Citrus Sinensis ID: 023147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MLLKACSDCYFLITEMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWLF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccccccccccccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccHHHHHHHHEEEEEcccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcc
Coil and Loop (DISEMBL)
MLLKACSDCYFLITEMysnmgtqpgpgmprpaadaqpnpfgnafygagsglirgglgaygekilgssSEYVQSnisryfsdpqyyfQVNDQYVRNKLKVVlfpflhrghwtritepvggrlsykppiydinapdlyipfMAFGTYVVLAGFtlglqgkftpeALNWLFIKGLFGWFMQFMLLKVTLLslgsgeaplLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLflwlgnitvnwlf
Flexible Loop (DISEMBL)
MLLKACSDCYFLITEMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPflhrghwtritepvggrlsYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWLF
Low Complexity Region (SEG)
MLLKACSDCYFLITEMYSNMGTQPGPGMPRPAADAQPNPFGNAFygagsglirgglgaygEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWLF
Disordered region (IsUnstruct)
**LKACSDCYFLITEMYS*********************FGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWL*
Disordered Region (DISOPRED)
**********************************************************************V*SNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHW***************PIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMK*****************LLIFIAFAQLPLFLWLGNITVNWLF
Disordered Region (DISEMBL)
MLLKACSDCYFLITEMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWLF
Disordered Region (DISPRO)
*LLKACSDCYFLITEMYSNMGTQPGPGMP*******PNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLKACSDCYFLITEMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLFLWLGNITVNWLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q5U3G6	304	Protein YIF1B OS=Danio re	yes	no	0.713	0.671	0.338	2e-26
Q6GN58	300	Protein YIF1B-A OS=Xenopu	N/A	no	0.716	0.683	0.323	5e-26
Q4FZQ0	300	Protein YIF1B-B OS=Xenopu	N/A	no	0.716	0.683	0.323	5e-26
Q5BJH7	314	Protein YIF1B OS=Homo sap	yes	no	0.828	0.754	0.323	7e-26
Q9CX30	311	Protein YIF1B OS=Mus musc	yes	no	0.716	0.659	0.326	1e-25
Q6P301	300	Protein YIF1B OS=Xenopus	yes	no	0.716	0.683	0.319	1e-24
P87148	293	Protein transport protein	yes	no	0.755	0.737	0.313	2e-24
Q3T196	293	Protein YIF1A OS=Bos taur	no	no	0.804	0.784	0.310	5e-23
Q91XB7	293	Protein YIF1A OS=Mus musc	no	no	0.636	0.621	0.345	1e-21
Q6PC24	307	Protein YIF1A OS=Danio re	no	no	0.730	0.680	0.315	4e-21

>sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 38/242 (15%)

Query: 58  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWT---R 112
           AYG  +     E +  N+ R+   S  +YYF V+  YV  KL +++FP++H  +W    +
Sbjct: 73  AYGSSLASHGKEMMDKNLDRFIPISKLKYYFAVDTVYVGKKLGLLVFPYMH-DNWEVNYQ 131

Query: 113 ITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------AL 164
              PV        P +DINAPDLYIP M F TYV++AG  LG Q +F+PE        AL
Sbjct: 132 QDTPVA-------PRFDINAPDLYIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSAL 184

Query: 165 NWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS- 223
            WL I+ L       +LL + L+++ + +   +D+VA++GY + G+ + V+  ++F  + 
Sbjct: 185 VWLIIEVL------AVLLSLYLVTVNT-DLTTIDLVAFSGYKYVGMIVGVVAGLLFGRTG 237

Query: 224 YYFLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL- 275
           YY  +LW C  + VF ++T++  + +E       +R   +    YL + IA AQ P+F+ 
Sbjct: 238 YYLALLWFCASIFVFTIRTLRLKILSEAAAEGRLVRGTKNQLRMYLTMAIAAAQ-PVFMY 296

Query: 276 WL 277
           WL
Sbjct: 297 WL 298

Danio rerio (taxid: 7955)

>sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 36/241 (14%)

Query: 58  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 115
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 116 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 165
             PV        P +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVA-------PRFDINAPDLYIPVMAFVTYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 166 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS-Y 224
           WL ++ L       +LL + L+++ + +   +D+VA+ GY + G+   V+  ++F  + Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFTGYKYVGMISGVISGLLFGKTGY 234

Query: 225 YFLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-W 276
           Y ++ W C+ +  F+++T++  + +E       +R   +    YL + IA  Q P+F+ W
Sbjct: 235 YIVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMYLTMAIAAVQ-PIFMYW 293

Query: 277 L 277
           L
Sbjct: 294 L 294

Xenopus laevis (taxid: 8355)

>sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 36/241 (14%)

Query: 58  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 115
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 116 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 165
             PV        P +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVA-------PRFDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 166 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS-Y 224
           WL ++ L       +LL + L+++ + +   +D+VA++GY + G+   V+  ++F  + Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKYVGMISGVIAGLLFGNTGY 234

Query: 225 YFLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-W 276
           Y ++ W C+ +  F+++T++  + +E       +R   +    YL + IA  Q P+F+ W
Sbjct: 235 YVVLAWCCISIVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMYLTMAIAAVQ-PIFMYW 293

Query: 277 L 277
           L
Sbjct: 294 L 294

Xenopus laevis (taxid: 8355)

>sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 141/278 (50%), Gaps = 41/278 (14%)

Query: 21  GTQPGPG-MPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYF 79
           G Q  PG +  PAA   P P         S +      AYG  +     E V  NI R+ 
Sbjct: 51  GAQRAPGGLSYPAA--SPTPHAAFLADPVSNMAM----AYGSSLAAQGKELVDKNIDRFI 104

Query: 80  --SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDL 135
             +  +YYF V+  YV  KL ++ FP+LH+    +  +  PV        P +D+NAPDL
Sbjct: 105 PITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDL 157

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNWLFIKGLFGWFMQFMLLKVTLL 187
           YIP MAF TYV++AG  LG Q +F+P+        AL WL ++ L       +LL + L+
Sbjct: 158 YIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVL------AILLSLYLV 211

Query: 188 SLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLIL-WMCMCMGVFLVKTMKRV 246
           ++ + +   +D+VA+ GY + G+   VL  ++F    Y+L+L W C+ + VF+++T++  
Sbjct: 212 TVNT-DLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLK 270

Query: 247 LFAE-------MRTHDSSRHHYLLIFIAFAQLPLFLWL 277
           + A+       +R   +    YL + +A AQ  L  WL
Sbjct: 271 ILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWL 308

Homo sapiens (taxid: 9606)

>sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=2 SV=2

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 128/239 (53%), Gaps = 34/239 (14%)

Query: 59  YGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE- 115
           YG  +     E V  NI R+   S  +YYF V+  YV  KL +++FP+LH+    +  + 
Sbjct: 81  YGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQD 140

Query: 116 -PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNW 166
            PV        P +DINAPDLYIP MAF TY+++AG  LG Q +F+P+        AL W
Sbjct: 141 TPVA-------PRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASSALAW 193

Query: 167 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYY 225
           L ++      +  +LL + L+++ + +   +D+VA+ GY + G+   VL  ++F    YY
Sbjct: 194 LTLE------VVAILLSLYLVTVNT-DLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYY 246

Query: 226 FLILWMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFLWL 277
            ++ W C+ + VF+++T++  + A+       +R   +    YL + +A AQ  L  WL
Sbjct: 247 LVLAWCCVSIFVFMIRTLRLKILAQAAAEGVPVRGARNQLRMYLTMAVAAAQPVLMYWL 305

Mus musculus (taxid: 10090)

>sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 131/241 (54%), Gaps = 36/241 (14%)

Query: 58  AYGEKILGSSSEYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 115
           AYG  +     E +  NI R    S  +YYF V+  YV  K+ +++FP++H+    R  +
Sbjct: 69  AYGSSLASQGKEMMDKNIDRIIPVSKIKYYFAVDTVYVGKKIGLLMFPYMHQDWEVRYQQ 128

Query: 116 --PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE--------ALN 165
             PV  R       +DINAPDLYIP MAF TY+++AG  LG Q +F+PE        AL 
Sbjct: 129 DTPVAPR-------FDINAPDLYIPVMAFITYILVAGLALGTQSRFSPEILGMQASSALA 181

Query: 166 WLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYY 225
           WL ++ L       +LL + L+++ + +   +D+VA++GY + G+   V+  ++F  + Y
Sbjct: 182 WLIVEVL------AILLSLYLVTVNT-DLTTVDLVAFSGYKYVGMISGVISGLLFGKTGY 234

Query: 226 FLIL-WMCMCMGVFLVKTMKRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-W 276
           +++L W  + +  F+++T++  + +E       +R   +    YL + IA  Q P+F+ W
Sbjct: 235 YVVLSWCGISVVFFMIRTLRLKILSEAAAEGVLVRGARNQLRMYLTMAIAAVQ-PIFMYW 293

Query: 277 L 277
           L
Sbjct: 294 L 294

Xenopus tropicalis (taxid: 8364)

>sp|P87148|YIF1_SCHPO Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 17/233 (7%)

Query: 60  GEKILGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRI---T 114
           G+  + +  EYV+ N  ++ S  +  +YF V + YV  KL +++FP+  R  W R    +
Sbjct: 61  GKNAVNAGQEYVEQNFGKWLSTTRLHHYFTVTNSYVVAKLLLIIFPWRRRS-WARKLRRS 119

Query: 115 EPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFG 174
           E  G    Y PP  D+N+PD+YIP MAF T+++L     GLQ  F PE       K    
Sbjct: 120 EINGSAEGYCPPAEDLNSPDMYIPLMAFTTHILLLCALAGLQDDFQPELFGLRASKACAV 179

Query: 175 WFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIV-FSYSYYFLILWMC 232
             ++F+  ++    L  S ++ +LD++A++GY F GL L  L ++    +   F+ L+M 
Sbjct: 180 VLVEFLATRLGCYLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMPWVTRFVFLYMY 239

Query: 233 MCMGVFLVKTMKRVLFAE--------MRTHDSSRHHYLLIFIAFAQLPLFLWL 277
           +    FL++++K  +  E        + +H  SR  Y L FIA +Q+ LF+++
Sbjct: 240 LATAFFLLRSLKYAVLPESTMAINATITSHQRSRRIYFLFFIAASQI-LFMYV 291

Required for fusion of ER-derived vesicles with the Golgi during ER-to-Golgi protein transport. May be involved in proper membrane localization of Rab GTPases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1

 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 15/245 (6%)

Query: 4   KACSDCYFLITEMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKI 63
           +A  D   L  +      +QPG G P P AD       N  +  G  +    + AYG  I
Sbjct: 17  RAAPDPPPLFDDTSGGYSSQPG-GYPAPGADVA----FNVNHLLGDPMANMAM-AYGSSI 70

Query: 64  LGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRL 121
                + +   + R+ S    +Y+F V+  YV  KL +++FP+ H+    + +  V    
Sbjct: 71  ASHGKDMMNKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVP--- 127

Query: 122 SYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFML 181
              PP  D+NAPDLYIP MAF TYV+LAG  LG+Q +F+PE L       L    M+ + 
Sbjct: 128 --LPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLA 185

Query: 182 LKVTL-LSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFL 239
           L + + L+    +     ++AY+GY + G+ L+VL  ++F S  YY  + W    +  F+
Sbjct: 186 LLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFI 245

Query: 240 VKTMK 244
           V++++
Sbjct: 246 VRSLR 250

Possible role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

>sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 9/191 (4%)

Query: 58  AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 115
           AYG  I     + V   + R+ S    +Y+F V+  YV  KL +++FP+ H+    + + 
Sbjct: 65  AYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWKMQYSH 124

Query: 116 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 175
            V       PP  D+NAPDLYIP MAF TYV+LAG  LG+Q +F+PE L       L   
Sbjct: 125 DVP-----LPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTALVWV 179

Query: 176 FMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCM 233
           FM+ + L + L       E     ++AY+GY + G+ L+VL  ++F S  YY  + W   
Sbjct: 180 FMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS 239

Query: 234 CMGVFLVKTMK 244
            +  F+V++++
Sbjct: 240 ALMYFIVRSLR 250

Possible role in transport between endoplasmic reticulum and Golgi.

Mus musculus (taxid: 10090)

>sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 35/244 (14%)

Query: 19  NMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRY 78
           NM   P  G      +   +P  NA    GS L   G             + V   I+R+
Sbjct: 48  NMAEMPAGGQEPGVGNIFADPMANAAMMYGSTLANQG------------KDIVNKEINRF 95

Query: 79  FS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLY 136
            S    +Y+F V+ +YV  KL +++FP+ H+    R       R +   P +D+NAPDLY
Sbjct: 96  MSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQDWEVRYH-----RDTPLTPRHDVNAPDLY 150

Query: 137 IPFMAFGTYVVLAGFTLGLQGKFTPE--------ALNWLFIKGLFGWFMQFMLLKVTLLS 188
           IP MAF TY++LAG  LG+Q +F+PE        AL W+ I+ L      ++L   T LS
Sbjct: 151 IPTMAFITYILLAGMALGIQKRFSPEVLGLCASTALVWMIIEVLVMLLSLYLLTVHTDLS 210

Query: 189 LGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFLVKTMKRVL 247
                    D+VAY+GY + G+ L V   ++F S  YY  + W    +  F+V+++K  +
Sbjct: 211 -------TFDLVAYSGYKYVGMILTVFCGLLFGSDGYYVALAWSSCALMFFIVRSLKMKI 263

Query: 248 FAEM 251
            + +
Sbjct: 264 LSSI 267

Possible role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255587105	269	Protein YIF1A, putative [Ricinus communi	0.940	1.0	0.863	1e-136
449468758	269	PREDICTED: protein YIF1B-A-like [Cucumis	0.881	0.936	0.884	1e-130
30695009	269	YIF1 integral membrane domain-containing	0.940	1.0	0.826	1e-129
110743793	269	hypothetical protein [Arabidopsis thalia	0.940	1.0	0.822	1e-129
388501636	269	unknown [Lotus japonicus]	0.940	1.0	0.826	1e-129
356526597	273	PREDICTED: protein YIF1B-like [Glycine m	0.944	0.989	0.823	1e-128
356568875	273	PREDICTED: protein YIF1B-like [Glycine m	0.944	0.989	0.823	1e-128
363807996	269	uncharacterized protein LOC100799056 [Gl	0.940	1.0	0.819	1e-127
297817248	265	hypothetical protein ARALYDRAFT_349013 [	0.919	0.992	0.828	1e-127
224095666	269	predicted protein [Populus trichocarpa]	0.933	0.992	0.817	1e-127

>gi|255587105|ref|XP_002534138.1| Protein YIF1A, putative [Ricinus communis] gi|223525796|gb|EEF28242.1| Protein YIF1A, putative [Ricinus communis]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/271 (86%), Positives = 253/271 (93%), Gaps = 2/271 (0%)

Query: 16  MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 75
           MY+N+GTQPG  +PRP  + QPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI
Sbjct: 1   MYNNVGTQPG--VPRPPTNPQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 58

Query: 76  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
           SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
           YIPFMAFGTY+VLAG +LGL GKF+PE LNWLF+KGL GWFMQ  LLKVTLLSLGSGEAP
Sbjct: 119 YIPFMAFGTYIVLAGLSLGLNGKFSPENLNWLFVKGLLGWFMQVALLKVTLLSLGSGEAP 178

Query: 196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
           LLD+VAYAGYTFTG+C+AVLGRI  +YSYYFL+ W C+CMG+FLVKTMKRVLFAE+RT+D
Sbjct: 179 LLDIVAYAGYTFTGMCIAVLGRIFINYSYYFLMPWACLCMGIFLVKTMKRVLFAEVRTYD 238

Query: 256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWLF 286
           SSRHHYLL+FIA AQ PLF WLGNIT+NWLF
Sbjct: 239 SSRHHYLLLFIALAQFPLFTWLGNITINWLF 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468758|ref|XP_004152088.1| PREDICTED: protein YIF1B-A-like [Cucumis sativus] gi|449502274|ref|XP_004161595.1| PREDICTED: protein YIF1B-A-like [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/252 (88%), Positives = 238/252 (94%)

Query: 34  DAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYV 93
            +QPNPFGNAFYGAGSGLIRGGLGAYGEKI GSSSEYVQSNISRYFSDPQYYFQVNDQYV
Sbjct: 17  SSQPNPFGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYV 76

Query: 94  RNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTL 153
           RNKLKVVLFPFLHRGHWTRIT+P+GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGF+L
Sbjct: 77  RNKLKVVLFPFLHRGHWTRITDPIGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFSL 136

Query: 154 GLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLA 213
           GLQGKFTPEAL+WLFIKGL GWFMQ MLLKVTLLSLGSGEAPLLD+VAYAGY FTGLCLA
Sbjct: 137 GLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDIVAYAGYAFTGLCLA 196

Query: 214 VLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPL 273
            +GRI   YSYYFL+ WM +CMG+FLVKTMKRVLFAE+RT+DSSRHHYLL+FIA AQ PL
Sbjct: 197 AIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRHHYLLLFIALAQFPL 256

Query: 274 FLWLGNITVNWL 285
           F WLGN++VNWL
Sbjct: 257 FTWLGNVSVNWL 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695009|ref|NP_191509.2| YIF1 integral membrane domain-containing protein [Arabidopsis thaliana] gi|332646412|gb|AEE79933.1| YIF1 integral membrane domain-containing protein [Arabidopsis thaliana] gi|385137882|gb|AFI41202.1| HRF1 protein, partial [Arabidopsis thaliana]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/271 (82%), Positives = 244/271 (90%), Gaps = 2/271 (0%)

Query: 16  MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 75
           MY+NMG  P PGM  P A+ QP+PFGN F G GSGLIR GLGAYGEKI GSSSEYVQSNI
Sbjct: 1   MYNNMG--PRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNI 58

Query: 76  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
           SRYFSDPQYYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
           YIP MAFGTYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAP 178

Query: 196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
           LLD+VAYAGYTFTGLCLAVLG+I++ YSYY LI W C+C GVFLVKTMKRVLFAE R++D
Sbjct: 179 LLDIVAYAGYTFTGLCLAVLGKIIWGYSYYVLIPWTCLCTGVFLVKTMKRVLFAESRSYD 238

Query: 256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWLF 286
           SSRHHYLLIF+A AQ PL +WLGNI+VNWLF
Sbjct: 239 SSRHHYLLIFVALAQFPLLIWLGNISVNWLF 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743793|dbj|BAE99732.1| hypothetical protein [Arabidopsis thaliana]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/271 (82%), Positives = 243/271 (89%), Gaps = 2/271 (0%)

Query: 16  MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 75
           MY+NMG  P PGM  P A+ QP+PFGN F G GSGLIR GLGAYGEKI GSSSEYVQSNI
Sbjct: 1   MYNNMG--PRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNI 58

Query: 76  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
           SRYFSDPQYYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
           YIP MAFGTYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAP 178

Query: 196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
           LLD+VAYAGYTFTGLCLAVLG+I++ YSYY LI W C+C GVFLVK MKRVLFAE R++D
Sbjct: 179 LLDIVAYAGYTFTGLCLAVLGKIIWGYSYYVLIPWTCLCTGVFLVKAMKRVLFAESRSYD 238

Query: 256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWLF 286
           SSRHHYLLIF+A AQ PL +WLGNI+VNWLF
Sbjct: 239 SSRHHYLLIFVALAQFPLLIWLGNISVNWLF 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501636|gb|AFK38884.1| unknown [Lotus japonicus]

 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/271 (82%), Positives = 244/271 (90%), Gaps = 2/271 (0%)

Query: 16  MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 75
           MY+N+G+QPG  +P+P   +Q NPFGNAF  AGSGLIRGGLGAYG KILGSSSEYVQSNI
Sbjct: 1   MYNNVGSQPG--VPQPPTSSQANPFGNAFQVAGSGLIRGGLGAYGGKILGSSSEYVQSNI 58

Query: 76  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
           SRYFSDPQYYFQVND YV+NKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
           YIP MAFGTYVVLAG +LGL GKF+PEALN LFIKGL GWFMQ  LLK+TLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVVLAGLSLGLHGKFSPEALNLLFIKGLLGWFMQASLLKMTLLSLGSGEAP 178

Query: 196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
           LLD++AYAGYTFTG+CLAVLGRI+  YSYYFL+ W C+CM VFLVKTMKRVLFAE+RT+D
Sbjct: 179 LLDIIAYAGYTFTGICLAVLGRIILGYSYYFLMPWTCLCMAVFLVKTMKRVLFAEVRTYD 238

Query: 256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWLF 286
           SS+HHYLL+FIA  Q PLF WLGNITVNWL 
Sbjct: 239 SSKHHYLLLFIALVQFPLFTWLGNITVNWLL 269

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526597|ref|XP_003531903.1| PREDICTED: protein YIF1B-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/272 (82%), Positives = 245/272 (90%), Gaps = 2/272 (0%)

Query: 16  MYSNMGTQPG--PGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQS 73
           MY+N+G  PG     P+P   +QPN FGNAF  +GSGLIRGGLGAYGEKILGSSSEYVQS
Sbjct: 1   MYTNIGMPPGVPQHHPQPPMSSQPNLFGNAFNSSGSGLIRGGLGAYGEKILGSSSEYVQS 60

Query: 74  NISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 133
           NISRYFSDPQYYFQVND YV+NKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP
Sbjct: 61  NISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 120

Query: 134 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGE 193
           DLYIP MAFGTYVVLAG +LGL+GKF+PEALNWLFIKGL GWFMQ  LLKVTLLSLGSGE
Sbjct: 121 DLYIPLMAFGTYVVLAGISLGLRGKFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGE 180

Query: 194 APLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRT 253
           APLLD++AYAGYTF GLCLAV GRI++SYSYYFL+LW C+CM V+LVKTMKRVLFAE+R+
Sbjct: 181 APLLDIIAYAGYTFPGLCLAVSGRIIWSYSYYFLMLWTCLCMAVYLVKTMKRVLFAEVRS 240

Query: 254 HDSSRHHYLLIFIAFAQLPLFLWLGNITVNWL 285
           +DSS+HHYLL+ IA AQ PLF WLGNITVNWL
Sbjct: 241 YDSSKHHYLLLLIALAQFPLFTWLGNITVNWL 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568875|ref|XP_003552633.1| PREDICTED: protein YIF1B-like [Glycine max]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/272 (82%), Positives = 244/272 (89%), Gaps = 2/272 (0%)

Query: 16  MYSNMGTQPG--PGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQS 73
           MY+N+G  PG     P+P   +QPN FGNAF  AGSGLIRGGLGAYGEKILGSSSEYVQS
Sbjct: 1   MYTNIGMPPGVPQHHPQPPTSSQPNLFGNAFNSAGSGLIRGGLGAYGEKILGSSSEYVQS 60

Query: 74  NISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 133
           NISRYFSDPQYYFQVND YV+NKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP
Sbjct: 61  NISRYFSDPQYYFQVNDHYVKNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 120

Query: 134 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGE 193
           DLYIP MAFGTYVVLAG +LGL+G F+PEALNWLFIKGL GWFMQ  LLKVTLLSLGSGE
Sbjct: 121 DLYIPLMAFGTYVVLAGISLGLRGMFSPEALNWLFIKGLVGWFMQTALLKVTLLSLGSGE 180

Query: 194 APLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRT 253
           APLLD++A AGYTF GLCLAV GR+++SYSYYFL+LW C+CM VFLVKTMKRVLFAE+R+
Sbjct: 181 APLLDIIANAGYTFAGLCLAVCGRMIWSYSYYFLMLWTCICMAVFLVKTMKRVLFAEVRS 240

Query: 254 HDSSRHHYLLIFIAFAQLPLFLWLGNITVNWL 285
           +DSS+HHYLL+FIA AQ PLF WLGNITVNWL
Sbjct: 241 YDSSKHHYLLLFIALAQFPLFTWLGNITVNWL 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807996|ref|NP_001242205.1| uncharacterized protein LOC100799056 [Glycine max] gi|255641178|gb|ACU20866.1| unknown [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/271 (81%), Positives = 242/271 (89%), Gaps = 2/271 (0%)

Query: 16  MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 75
           MYSN+G+QPG  + +P     PNPFG+AF  AGSGLIRGGLGAYG KILGSSSEYVQSNI
Sbjct: 1   MYSNVGSQPG--VQQPQTSLPPNPFGSAFNVAGSGLIRGGLGAYGGKILGSSSEYVQSNI 58

Query: 76  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
           SRYFSDPQYYFQVNDQYV+NKLKVVL PFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDQYVKNKLKVVLLPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
           YIP MAFGTYV+LAG +LGL GKF+PEALN LFIKGL GWFMQ  L KVTLLSLGSGEAP
Sbjct: 119 YIPLMAFGTYVILAGLSLGLHGKFSPEALNLLFIKGLLGWFMQAALPKVTLLSLGSGEAP 178

Query: 196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
           LLD++AYAGYTFTG+CLAVLGRI+  YSYYFL+ W C+CMGVFLVKTMKRVLFAE+R++D
Sbjct: 179 LLDIIAYAGYTFTGICLAVLGRIILGYSYYFLMPWTCLCMGVFLVKTMKRVLFAEVRSYD 238

Query: 256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWLF 286
           SSRHHYLL+FIA  Q PLF WLGNIT+NWL 
Sbjct: 239 SSRHHYLLLFIALVQFPLFTWLGNITINWLL 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817248|ref|XP_002876507.1| hypothetical protein ARALYDRAFT_349013 [Arabidopsis lyrata subsp. lyrata] gi|297322345|gb|EFH52766.1| hypothetical protein ARALYDRAFT_349013 [Arabidopsis lyrata subsp. lyrata]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/263 (82%), Positives = 237/263 (90%)

Query: 24  PGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQ 83
           P PGMP P  + QP+PFGN F G GSGLIR GLGAYGEKI GSSSEYVQSNISRYFSDPQ
Sbjct: 3   PQPGMPMPQVNPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNISRYFSDPQ 62

Query: 84  YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFG 143
           YYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDLYIP MAFG
Sbjct: 63  YYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDLYIPLMAFG 122

Query: 144 TYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYA 203
           TYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAPLLD+VAYA
Sbjct: 123 TYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAPLLDIVAYA 182

Query: 204 GYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLL 263
           GYTFTGLCLAVLG+I++ YSYY LI W C+C GVFLVKTMKRVLFAE R++ SSRHHYLL
Sbjct: 183 GYTFTGLCLAVLGKIIWGYSYYVLIPWTCICTGVFLVKTMKRVLFAESRSYVSSRHHYLL 242

Query: 264 IFIAFAQLPLFLWLGNITVNWLF 286
           IF+A AQ PL +WLGNI+VNWLF
Sbjct: 243 IFVALAQFPLLIWLGNISVNWLF 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095666|ref|XP_002310429.1| predicted protein [Populus trichocarpa] gi|222853332|gb|EEE90879.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/269 (81%), Positives = 241/269 (89%), Gaps = 2/269 (0%)

Query: 16  MYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNI 75
           MY+N+G QPG  +PRP  + QP PFGNAFYGAGSGLI+GGLGAYGEKILGSSSEYVQSNI
Sbjct: 1   MYNNVGPQPG--VPRPPTNPQPTPFGNAFYGAGSGLIKGGLGAYGEKILGSSSEYVQSNI 58

Query: 76  SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
           SRYFSDPQYYFQVND YVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL
Sbjct: 59  SRYFSDPQYYFQVNDHYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 118

Query: 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
           YIPFMAFGTYVVLAG +LGL GKF+PEALNWLF+KGL GWFMQ  LLK+ LLSLGSGEAP
Sbjct: 119 YIPFMAFGTYVVLAGLSLGLNGKFSPEALNWLFVKGLLGWFMQVALLKIILLSLGSGEAP 178

Query: 196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
           LLD+VAYAGYTFTG+C AVLG+I+  YSYY L+   C+CMG+FLVKTMKRVLFAE+R+ D
Sbjct: 179 LLDMVAYAGYTFTGICFAVLGKILPGYSYYILMPCTCLCMGIFLVKTMKRVLFAEVRSVD 238

Query: 256 SSRHHYLLIFIAFAQLPLFLWLGNITVNW 284
           SSRHHYLL+ I   Q PLF WLGN++VNW
Sbjct: 239 SSRHHYLLLLIGLVQFPLFAWLGNVSVNW 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2097583	269	AT3G59500 [Arabidopsis thalian	0.940	1.0	0.778	1.6e-116
TAIR|locus:2015716	269	AT1G30890 "AT1G30890" [Arabido	0.937	0.996	0.755	1.2e-113
UNIPROTKB|Q5BJH7	314	YIF1B "Protein YIF1B" [Homo sa	0.846	0.770	0.315	7.3e-27
MGI|MGI:1924504	311	Yif1b "Yip1 interacting factor	0.839	0.771	0.307	1.5e-26
ZFIN|ZDB-GENE-041114-16	304	yif1b "Yip1 interacting factor	0.706	0.664	0.328	3.2e-26
POMBASE|SPBC25H2.06c	293	hrf1 "COPII-coated vesicle com	0.741	0.723	0.314	2.2e-25
CGD|CAL0004032	300	orf19.6642 [Candida albicans (	0.639	0.61	0.292	1.2e-24
UNIPROTKB|Q59PS2	300	YIF1 "Putative uncharacterized	0.639	0.61	0.292	1.2e-24
ZFIN|ZDB-GENE-030131-6922	307	yif1a "Yip1 interacting factor	0.825	0.768	0.311	2.6e-24
UNIPROTKB|G4NJF3	322	MGG_12628 "Hrf1 domain-contain	0.804	0.714	0.313	3.3e-24

TAIR|locus:2097583 AT3G59500 [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 211/271 (77%), Positives = 231/271 (85%)

Query:    16 MYSNMGTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNI 75
             MY+NMG  P PGM  P A+ QP+PFGN F                EKI GSSSEYVQSNI
Sbjct:     1 MYNNMG--PRPGMAMPQANPQPSPFGNPFSGPGSGLIRSGLGAYGEKIFGSSSEYVQSNI 58

Query:    76 SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
             SRYFSDPQYYFQVNDQYVRNKLK+VL PFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct:    59 SRYFSDPQYYFQVNDQYVRNKLKIVLLPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query:   136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
             YIP MAFGTYVVLAG +LGL GKFTPEALNWLF+KG+ GWF+Q MLLK+TLLSLGSGEAP
Sbjct:   119 YIPLMAFGTYVVLAGLSLGLYGKFTPEALNWLFVKGMVGWFLQVMLLKITLLSLGSGEAP 178

Query:   196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
             LLD+VAYAGYTFTGLCLAVLG+I++ YSYY LI W C+C GVFLVKTMKRVLFAE R++D
Sbjct:   179 LLDIVAYAGYTFTGLCLAVLGKIIWGYSYYVLIPWTCLCTGVFLVKTMKRVLFAESRSYD 238

Query:   256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWLF 286
             SSRHHYLLIF+A AQ PL +WLGNI+VNWLF
Sbjct:   239 SSRHHYLLIFVALAQFPLLIWLGNISVNWLF 269

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2015716 AT1G30890 "AT1G30890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 204/270 (75%), Positives = 227/270 (84%)

Query:    16 MYSNMGTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNI 75
             MY+NMG  P PGMPRP  + +P PFGN F                E+ILGSSSEYVQSNI
Sbjct:     1 MYNNMG--PQPGMPRPPGNPEPGPFGNPFTGAGSGFIRGGLGAYGERILGSSSEYVQSNI 58

Query:    76 SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135
             SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRI+EPVGGRLSYKPPIYDINAPDL
Sbjct:    59 SRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRISEPVGGRLSYKPPIYDINAPDL 118

Query:   136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLGSGEAP 195
             YIPFMAFGTYVVLAG +LGL GKFTPEALNWLF+KGL GWF+Q MLLKVTLLSLGSGEAP
Sbjct:   119 YIPFMAFGTYVVLAGLSLGLNGKFTPEALNWLFVKGLVGWFLQVMLLKVTLLSLGSGEAP 178

Query:   196 LLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTHD 255
             LLD+VAY GY F GLCLA   +I++ YSYY L+ W C+C G+FLVKTMKRVLFAE+R++D
Sbjct:   179 LLDIVAYGGYAFAGLCLAGFAKIMWGYSYYALMPWTCLCTGIFLVKTMKRVLFAEVRSYD 238

Query:   256 SSRHHYLLIFIAFAQLPLFLWLGNITVNWL 285
             SS+HHYLL+F+A  Q PL +WLGNI+VNWL
Sbjct:   239 SSKHHYLLLFLALVQFPLLIWLGNISVNWL 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q5BJH7 YIF1B "Protein YIF1B" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 86/273 (31%), Positives = 135/273 (49%)

Query:    21 GTQPGPG-MPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYF 79
             G Q  PG +  PAA   P P   AF                  +     E V  NI R+ 
Sbjct:    51 GAQRAPGGLSYPAAS--PTPHA-AFLADPVSNMAMAYGSS---LAAQGKELVDKNIDRFI 104

Query:    80 --SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDL 135
               +  +YYF V+  YV  KL ++ FP+LH+    +  +  PV        P +D+NAPDL
Sbjct:   105 PITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVA-------PRFDVNAPDL 157

Query:   136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWF---MQFMLLKVTLLSLGSG 192
             YIP MAF TYV++AG  LG Q +F+P+ L  L       W    +  +LL + L+++ + 
Sbjct:   158 YIPAMAFITYVLVAGLALGTQDRFSPDLLG-LQASSALAWLTLEVLAILLSLYLVTVNT- 215

Query:   193 EAPLLDVVAYAGYTFTGLCLAVLGRIVFSYSYYFLIL-WMCMCMGVFLVKTMKRVLFAEM 251
             +   +D+VA+ GY + G+   VL  ++F    Y+L+L W C+ + VF+++T++  + A+ 
Sbjct:   216 DLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADA 275

Query:   252 RTHD----SSRHH---YLLIFIAFAQLPLFLWL 277
                      +R+    YL + +A AQ  L  WL
Sbjct:   276 AAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWL 308

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924504 Yif1b "Yip1 interacting factor homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 83/270 (30%), Positives = 133/270 (49%)

Query:    29 PRPAADAQPNPFGNAFXXXXXXXXXXXX-XXXXEKILGSS-----SEYVQSNISRYF--S 80
             P      QP+P G  +                   + GSS      E V  NI R+   S
Sbjct:    45 PSRGYGGQPSPGGLGYPPSSSDAAFLAAPMSNMAMVYGSSLAAQGKELVDKNIDRFIPVS 104

Query:    81 DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE--PVGGRLSYKPPIYDINAPDLYIP 138
               +YYF V+  YV  KL +++FP+LH+    +  +  PV        P +DINAPDLYIP
Sbjct:   105 KLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDTPVA-------PRFDINAPDLYIP 157

Query:   139 FMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWF---MQFMLLKVTLLSLGSGEAP 195
              MAF TY+++AG  LG Q +F+P+ L  L       W    +  +LL + L+++ + +  
Sbjct:   158 AMAFITYILVAGLALGTQDRFSPDLLG-LQASSALAWLTLEVVAILLSLYLVTVNT-DLT 215

Query:   196 LLDVVAYAGYTFTGLCLAVLGRIVFS-YSYYFLILWMCMCMGVFLVKTMKRVLFAEMRTH 254
              +D+VA+ GY + G+   VL  ++F    YY ++ W C+ + VF+++T++  + A+    
Sbjct:   216 TIDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVLAWCCVSIFVFMIRTLRLKILAQAAAE 275

Query:   255 D----SSRHH---YLLIFIAFAQLPLFLWL 277
                   +R+    YL + +A AQ  L  WL
Sbjct:   276 GVPVRGARNQLRMYLTMAVAAAQPVLMYWL 305

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-16 yif1b "Yip1 interacting factor homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 73/222 (32%), Positives = 125/222 (56%)

Query:    69 EYVQSNISRYF--SDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPP 126
             E +  N+ R+   S  +YYF V+  YV  KL +++FP++H  +W  +       ++   P
Sbjct:    84 EMMDKNLDRFIPISKLKYYFAVDTVYVGKKLGLLVFPYMH-DNW-EVNYQQDTPVA---P 138

Query:   127 IYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM--LLKV 184
              +DINAPDLYIP M F TYV++AG  LG Q +F+PE L       L    ++ +  LL +
Sbjct:   139 RFDINAPDLYIPVMGFITYVLVAGLALGTQNRFSPEILGIQASSALVWLIIEVLAVLLSL 198

Query:   185 TLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVFSYS-YYFLILWMCMCMGVFLVKTM 243
              L+++ + +   +D+VA++GY + G+ + V+  ++F  + YY  +LW C  + VF ++T+
Sbjct:   199 YLVTVNT-DLTTIDLVAFSGYKYVGMIVGVVAGLLFGRTGYYLALLWFCASIFVFTIRTL 257

Query:   244 KRVLFAE-------MRTHDSSRHHYLLIFIAFAQLPLFL-WL 277
             +  + +E       +R   +    YL + IA AQ P+F+ WL
Sbjct:   258 RLKILSEAAAEGRLVRGTKNQLRMYLTMAIAAAQ-PVFMYWL 298

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPBC25H2.06c hrf1 "COPII-coated vesicle component Hrf1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 72/229 (31%), Positives = 121/229 (52%)

Query:    64 LGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRI---TEPVG 118
             + +  EYV+ N  ++ S  +  +YF V + YV  KL +++FP+  R  W R    +E  G
Sbjct:    65 VNAGQEYVEQNFGKWLSTTRLHHYFTVTNSYVVAKLLLIIFPWRRRS-WARKLRRSEING 123

Query:   119 GRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQ 178
                 Y PP  D+N+PD+YIP MAF T+++L     GLQ  F PE       K      ++
Sbjct:   124 SAEGYCPPAEDLNSPDMYIPLMAFTTHILLLCALAGLQDDFQPELFGLRASKACAVVLVE 183

Query:   179 FMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIV-FSYSYYFLILWMCMCMG 236
             F+  ++    L  S ++ +LD++A++GY F GL L  L ++    +   F+ L+M +   
Sbjct:   184 FLATRLGCYLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMPWVTRFVFLYMYLATA 243

Query:   237 VFLVKTMKRVLFAE--------MRTHDSSRHHYLLIFIAFAQLPLFLWL 277
              FL++++K  +  E        + +H  SR  Y L FIA +Q+ LF+++
Sbjct:   244 FFLLRSLKYAVLPESTMAINATITSHQRSRRIYFLFFIAASQI-LFMYV 291

GO:0003674 "molecular_function" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0030134 "ER to Golgi transport vesicle" evidence=ISO

GO:0030173 "integral to Golgi membrane" evidence=ISO

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IMP

CGD|CAL0004032 orf19.6642 [Candida albicans (taxid:5476)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/188 (29%), Positives = 107/188 (56%)

Query:    67 SSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPP 126
             S++Y+Q N      D +YYFQV++ YV  K+ ++L P+ H+  W R++    G   + PP
Sbjct:    77 SNQYLQENFGSLQGDIKYYFQVSNSYVFKKIILILMPYNHKD-WNRVSTKETGTNQFLPP 135

Query:   127 IYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL 186
               DINAPDLY+P M+F TY++L     G+ G F P+   +L  + +    +  ++ K  L
Sbjct:   136 NLDINAPDLYLPLMSFVTYILLWAAFQGINGDFHPQLFGYLASQTIAFSVLDVVIFKTGL 195

Query:   187 LSLGSGEAPLLDVVAYAGYTFTGLC-LAVLGRIVFSYS---YYFLILWMCMCMGVFLVKT 242
               L   ++ + D+++++GY +  +  L +L  +V +Y    YY ++L +   + +FL+++
Sbjct:   196 YLLNCPQSKIYDIISFSGYKYVSIIVLLILKYLVGNYLGLFYYIVVLLLIANLSIFLMRS 255

Query:   243 MKRVLFAE 250
             ++ ++  +
Sbjct:   256 LRFLILPQ 263

GO:0003674 "molecular_function" evidence=ND

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0030173 "integral to Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0070317 "negative regulation of G0 to G1 transition" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q59PS2 YIF1 "Putative uncharacterized protein YIF1" [Candida albicans SC5314 (taxid:237561)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/188 (29%), Positives = 107/188 (56%)

Query:    67 SSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPP 126
             S++Y+Q N      D +YYFQV++ YV  K+ ++L P+ H+  W R++    G   + PP
Sbjct:    77 SNQYLQENFGSLQGDIKYYFQVSNSYVFKKIILILMPYNHKD-WNRVSTKETGTNQFLPP 135

Query:   127 IYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTL 186
               DINAPDLY+P M+F TY++L     G+ G F P+   +L  + +    +  ++ K  L
Sbjct:   136 NLDINAPDLYLPLMSFVTYILLWAAFQGINGDFHPQLFGYLASQTIAFSVLDVVIFKTGL 195

Query:   187 LSLGSGEAPLLDVVAYAGYTFTGLC-LAVLGRIVFSYS---YYFLILWMCMCMGVFLVKT 242
               L   ++ + D+++++GY +  +  L +L  +V +Y    YY ++L +   + +FL+++
Sbjct:   196 YLLNCPQSKIYDIISFSGYKYVSIIVLLILKYLVGNYLGLFYYIVVLLLIANLSIFLMRS 255

Query:   243 MKRVLFAE 250
             ++ ++  +
Sbjct:   256 LRFLILPQ 263

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-6922 yif1a "Yip1 interacting factor homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 81/260 (31%), Positives = 130/260 (50%)

Query:    31 PAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS--DPQYYFQV 88
             PA   +P   GN F                  +     + V   I+R+ S    +Y+F V
Sbjct:    53 PAGGQEPG-VGNIFADPMANAAMMYGST----LANQGKDIVNKEINRFMSVNKLKYFFAV 107

Query:    89 NDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVL 148
             + +YV  KL +++FP+ H+  W    E    R +   P +D+NAPDLYIP MAF TY++L
Sbjct:   108 DTKYVMKKLLLLMFPYTHQD-W----EVRYHRDTPLTPRHDVNAPDLYIPTMAFITYILL 162

Query:   149 AGFTLGLQGKFTPEALNWLFIKGLFGWFMQF--MLLKVTLLSLGSGEAPLLDVVAYAGYT 206
             AG  LG+Q +F+PE L       L    ++   MLL + LL++ + +    D+VAY+GY 
Sbjct:   163 AGMALGIQKRFSPEVLGLCASTALVWMIIEVLVMLLSLYLLTVHT-DLSTFDLVAYSGYK 221

Query:   207 FTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFLVKTMK-RVLFA----EMRTHDSSRHH 260
             + G+ L V   ++F S  YY  + W    +  F+V+++K ++L +     M    S++  
Sbjct:   222 YVGMILTVFCGLLFGSDGYYVALAWSSCALMFFIVRSLKMKILSSISADSMGAGASAKPR 281

Query:   261 Y-LLIFIAFAQLPLFL--WL 277
             + L I +A A    F+  WL
Sbjct:   282 FRLYITVASAAFQPFIIYWL 301

GO:0003674 "molecular_function" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|G4NJF3 MGG_12628 "Hrf1 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 79/252 (31%), Positives = 127/252 (50%)

Query:    21 GTQPGPGMPRPAADAQPNPFGNAFXXXXXXXXXXXXXXXXEKILGSSSEYVQSNISRYFS 80
             G  P P   +  A  Q N FG  +                        E +  NI+RY S
Sbjct:    45 GGSPYPQQQQGGAGPQ-NMFGQ-YGQFMNDPAAQVAAHFGSTAFRQGQEIIDQNINRYLS 102

Query:    81 DP--QYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPV---GGRLSYKPPIYDINAPDL 135
                 ++YF V + YV NK+ +VLFP+ H+  W+R  +P    GG+  Y PP  D+N+PD+
Sbjct:   103 VHLLKHYFNVTNSYVINKIYLVLFPWRHKP-WSR--KPAMGPGGQEGYLPPRDDVNSPDM 159

Query:   136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVT--LLSLGSGE 193
             YIP M+  TY++L+    GL+G+F PE L       L     + ++LK+   ++S+ S  
Sbjct:   160 YIPVMSLVTYILLSTAIAGLRGQFQPELLGNTAGTALIVVAAEIIILKLGCYIMSI-SNN 218

Query:   194 APLLDVVAYAGYTFTGLCLAVL-------GRIVFSYSYYFLILWMCMCMGVFLVKTMKRV 246
             + LLD+VAY+GY F G+ + V        G+    +S + + ++  +   +FL++++K V
Sbjct:   219 SQLLDLVAYSGYKFVGVIVTVAVAEVMNGGKGTGGWSGWSVFIYTFLANSLFLMRSLKYV 278

Query:   247 LFAEMRTHDSSR 258
             L  E    D+SR
Sbjct:   279 LLPE--NADNSR 288

GO:0003674 "molecular_function" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam03878	240	pfam03878, YIF1, YIF1	4e-86
COG5197	284	COG5197, COG5197, Predicted membrane protein [Func	6e-35

>gnl|CDD|217776 pfam03878, YIF1, YIF1

 Score =  256 bits (657), Expect = 4e-86
 Identities = 98/233 (42%), Positives = 134/233 (57%), Gaps = 17/233 (7%)

Query: 58  AYGEKILGSSSEYVQSNISRYFSDPQ--YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITE 115
            YG+ I     EYV+ N SR+ S  +  YYF V+  YV NKLK++LFP+LHR  W RI +
Sbjct: 13  QYGQSIANQGKEYVEKNFSRWVSVSKLKYYFAVDTAYVGNKLKLLLFPYLHR-DWERIYD 71

Query: 116 PVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGW 175
               R S  PP YD+NAPDLYIP MAF TY++LAG  LGLQG+F+PE L       L   
Sbjct: 72  ----RESPLPPRYDVNAPDLYIPTMAFITYILLAGLLLGLQGRFSPELLGLQASSALAWV 127

Query: 176 FMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCM 233
           F++ + LK+ L  L  S     LD++AY+GY F GL LAVL +++F  Y YY ++ + C+
Sbjct: 128 FLEVLALKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAVLTKLLFGPYGYYLVLAYTCL 187

Query: 234 CMGVFLVKTMKRVLFAE--------MRTHDSSRHHYLLIFIAFAQLPLFLWLG 278
             G FL++++K  L +         + +    +  Y L FIA  Q     WL 
Sbjct: 188 ATGFFLLRSLKTALLSAPAAAYGAPVISSQRKKRLYFLFFIAAVQPLFLYWLS 240

YIF1 (Yip1 interacting factor) is an integral membrane protein that is required for membrane fusion of ER derived vesicles. It also plays a role in the biogenesis of ER derived COPII transport vesicles. Length = 240

>gnl|CDD|227524 COG5197, COG5197, Predicted membrane protein [Function unknown]

 Score =  126 bits (319), Expect = 6e-35
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 18/230 (7%)

Query: 60  GEKILGSSSEYVQSNISRYFSDPQY--YFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPV 117
           G+       EYV        S  Q   YFQV+++YV NKLK++LFPFL++ +W RI +  
Sbjct: 59  GKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNK-NWQRIGDSE 117

Query: 118 GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFM 177
           G    + PP  D+N+PD+Y+P M F TY++L     GL+G F PE L +     L    +
Sbjct: 118 G----FLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCV 173

Query: 178 QFMLLKVTLLSLGSGEAP-LLDVVAYAGYTFTGLCLAVLGRIV-FSYSYYFLILWMCMCM 235
             ++ ++ L  L   + P  LD++AY+GY F  L LA L + V   +    LI ++ +  
Sbjct: 174 DLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNVTMPFVLNILIFYLYIAF 233

Query: 236 GVFLVKTMKRVLF--------AEMRTHDSSRHHYLLIFIAFAQLPLFLWL 277
           GVFL++++K  +         A +      R +Y L  I   Q  + +WL
Sbjct: 234 GVFLLRSLKFNVLSRSGAEIHASISKSTRKRRNYFLFVIFIWQN-VLMWL 282

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG3094	284	consensus Predicted membrane protein [Function unk	100.0
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	100.0
COG5197	284	Predicted membrane protein [Function unknown]	100.0
KOG3114	290	consensus Uncharacterized conserved protein [Funct	98.66
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	95.96
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	95.13
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	94.95
KOG2946	234	consensus Uncharacterized conserved protein [Funct	89.72

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.5e-83  Score=587.29  Aligned_cols=258  Identities=50%  Similarity=0.890  Sum_probs=242.0

Q ss_pred             hhhhhcCCCCCCCCCCCCCCCCCCCCCCccccccchhhhhhHh---------hhHHHHHhhhhHHHHhhhhhhcc--CCc
Q 023147           15 EMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLG---------AYGEKILGSSSEYVQSNISRYFS--DPQ   83 (286)
Q Consensus        15 ~~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~yG~~~~~~g~~yvq~n~~~y~s--~lk   83 (286)
                      .++++.+|+  +++++|+-.|.++|+||+.+|.|++..+.+++         +|||+++++|+||||+|++||++  ++|
T Consensus        10 ~~~~~~~p~--a~~p~p~~dp~~Gp~g~~~~G~g~~~~~~~l~g~~~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~~~~l~   87 (284)
T KOG3094|consen   10 PDPNHAGPA--APMPVPQFDPTPGPFGNPVTGAGAGFPVQGLGGSPMADMAMAYGKKIAGQGKEYVEKNLGKYVSVPKLK   87 (284)
T ss_pred             CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccce
Confidence            456777777  66777776788889999999999988888887         99999999999999999999997  789


Q ss_pred             ceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhh
Q 023147           84 YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEA  163 (286)
Q Consensus        84 yYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~  163 (286)
                      |||+|||+||.|||++|+|||+||+ |+|+.|    +++++|||+|+||||||||+|||+||||++|+.+|++|+|+||.
T Consensus        88 yYF~Vdn~YV~~KL~lilfPf~hk~-W~~~~~----~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~  162 (284)
T KOG3094|consen   88 YYFAVDNAYVGKKLKLILFPFLHKD-WTRIYE----RESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEA  162 (284)
T ss_pred             EEEEechHHHhhhheEEEeeecCcc-hhhhhc----ccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHH
Confidence            9999999999999999999999995 999988    34699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcceeeeecccchhhHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH
Q 023147          164 LNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFLVK  241 (286)
Q Consensus       164 Lg~~~S~~l~~~~lEv~ilk~~~Y~l~-~~~~~~lDllAysGYKyV~ii~~ll~~l~~-~~~yy~~~ly~~~a~~~Fl~R  241 (286)
                      ||+.+|+++++|++|++++|+++|+++ +++.+++|++||+|||||++|++.+.++++ .+.||+++.|+++|.++||+|
T Consensus       163 Lg~~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~~yyi~~~yt~~a~gvFLlR  242 (284)
T KOG3094|consen  163 LGILASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPYGYYIALAYTYLAFGVFLLR  242 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 589999999999999999999999999986 599999999999999999999


Q ss_pred             HHHHHhhhhccccC----CccceeehhHHHHHHHHHHHHHhh
Q 023147          242 TMKRVLFAEMRTHD----SSRHHYLLIFIAFAQLPLFLWLGN  279 (286)
Q Consensus       242 tLk~~~l~e~~~~~----~~r~~yfl~~ia~~Q~~l~~wL~~  279 (286)
                      |||+.+++|.+..+    ++||+||||++|++|+++++||++
T Consensus       243 SlK~~ll~~~~~~~~v~q~~r~~YfLf~ia~~Q~~~l~wLs~  284 (284)
T KOG3094|consen  243 SLKRALLAESSMADPVPQSSRRLYFLFFIAAVQFLILYWLSN  284 (284)
T ss_pred             HHHHHHcCCccccCccchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence            99999999988766    899999999999999999999974

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=100.00  E-value=4.7e-79  Score=558.03  Aligned_cols=218  Identities=45%  Similarity=0.894  Sum_probs=205.6

Q ss_pred             HhhhHHHHHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCC
Q 023147           56 LGAYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP  133 (286)
Q Consensus        56 ~~~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAP  133 (286)
                      .++|||+++++|+||||||++||++  ++||||||||+||+|||++|+|||+|| +|+|+.|    +++++|||+|+|||
T Consensus        11 ~~q~G~~~~~~g~~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k-~W~r~~~----~~~~~~Pr~DvNAP   85 (240)
T PF03878_consen   11 AMQYGQSALNQGQEYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHK-DWSRKYE----QESYLPPREDVNAP   85 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccC-Ccccccc----ccCCCCchhhccCc
Confidence            3599999999999999999999997  799999999999999999999999999 6999987    34689999999999


Q ss_pred             CcccchhHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcceeeeecccchhhHHH
Q 023147          134 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCL  212 (286)
Q Consensus       134 DLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~S~~l~~~~lEv~ilk~~~Y~l~-~~~~~~lDllAysGYKyV~ii~  212 (286)
                      |||||+||++||||++|+.+|++|+||||.||.++|+++++|++|++++|+++|+++ +++.+++|++||+|||||++|+
T Consensus        86 DLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~  165 (240)
T PF03878_consen   86 DLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIIL  165 (240)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 5899999999999999999999


Q ss_pred             HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc-------CCccceeehhHHHHHHHHHHHHHh
Q 023147          213 AVLGRIVF-SYSYYFLILWMCMCMGVFLVKTMKRVLFAEMR-TH-------DSSRHHYLLIFIAFAQLPLFLWLG  278 (286)
Q Consensus       213 ~ll~~l~~-~~~yy~~~ly~~~a~~~Fl~RtLk~~~l~e~~-~~-------~~~r~~yfl~~ia~~Q~~l~~wL~  278 (286)
                      +++++++. +++||++++|+++|+++|++||||+.++++.+ ++       +++||+|||+++|++|+|++||||
T Consensus       166 ~~l~~~l~~~~~yy~~~ly~~~a~~~Fl~RsLk~~i~~~~~~~~~~~~~~~~~~~r~yfL~~~a~~Q~~l~~wLt  240 (240)
T PF03878_consen  166 TLLASLLFGSWVYYIALLYTSFANAFFLLRSLKRVILPSPSSSYGSVSSSSQRKRRNYFLFFIAIVQPPLMFWLT  240 (240)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeehhHHHHHHHHHHHHHHhhC
Confidence            99999885 69999999999999999999999999996332 22       378999999999999999999996

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>COG5197 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=4.6e-61  Score=432.13  Aligned_cols=215  Identities=34%  Similarity=0.605  Sum_probs=197.5

Q ss_pred             hhHHHHHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCc
Q 023147           58 AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL  135 (286)
Q Consensus        58 ~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDL  135 (286)
                      .-||.++++++|||+|++++..+  .+++||+|||+||.+||++|+|||++| +|+|..+.    ++|+|||||+|+|||
T Consensus        57 ~iGk~a~n~~qEyv~k~~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk-~W~r~gd~----eg~~pp~~d~nsPdm  131 (284)
T COG5197          57 FIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNK-NWQRIGDS----EGFLPPRDDVNSPDM  131 (284)
T ss_pred             HHhHHHHHHHHHHHHHhhcccccccceeEEEEechHhHHhhhheEEeecccc-hhhhccCC----CCCCCchhhcCCccc
Confidence            47999999999999999999997  799999999999999999999999999 79995443    459999999999999


Q ss_pred             ccchhHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcceeeeecccchhhHHHHH
Q 023147          136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAV  214 (286)
Q Consensus       136 YIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~S~~l~~~~lEv~ilk~~~Y~l~-~~~~~~lDllAysGYKyV~ii~~l  214 (286)
                      |+|+|+|+|||||++..+|++|.|+||.||..+|+++++..+|+++.|+++|+++ +...+++|++||+|||||+++++-
T Consensus       132 Y~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~q  211 (284)
T COG5197         132 YMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQ  211 (284)
T ss_pred             cchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 556779999999999999999998


Q ss_pred             HHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------ccCCccceeehhHHHHHHHHHHHHH
Q 023147          215 LGRIVF-SYSYYFLILWMCMCMGVFLVKTMKRVLFAEMR--------THDSSRHHYLLIFIAFAQLPLFLWL  277 (286)
Q Consensus       215 l~~l~~-~~~yy~~~ly~~~a~~~Fl~RtLk~~~l~e~~--------~~~~~r~~yfl~~ia~~Q~~l~~wL  277 (286)
                      +.+.+. .|.--+...|..+|.++||+||+|+.++++..        +++++||+||||++++.|..+||-|
T Consensus       212 L~k~~~Mp~v~~i~~~Ylyiaf~vFLlRSlK~~vl~~s~~~i~asis~~~r~rr~YfLF~i~i~Q~~~m~ll  283 (284)
T COG5197         212 LLKNVTMPFVLNILIFYLYIAFGVFLLRSLKFNVLSRSGAEIHASISKSTRKRRNYFLFVIFIWQNVLMWLL  283 (284)
T ss_pred             HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeeechhhhhheeeeeehHHHHHHHHHHhh
Confidence            888874 67777778999999999999999999999753        2358999999999999998777655

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=7.3e-07  Score=84.38  Aligned_cols=149  Identities=23%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             CCcceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHh-------
Q 023147           81 DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTL-------  153 (286)
Q Consensus        81 ~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~-------  153 (286)
                      -.|.|||||++-|++||+-.++|  ++  -.  .++.            -+.||||-|+|...|-|-+.+...       
T Consensus        79 yyq~fFdVDt~qV~~Rl~~SliP--~~--~~--~~~~------------~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~  140 (290)
T KOG3114|consen   79 YYQPFFDVDTAQVRKRLKESLIP--RN--YV--RDQI------------QDNPDLYGPFWITATLVFALAISGNLATFIR  140 (290)
T ss_pred             hhccccCCCHHHHHHHHHHhcCC--cc--cc--cccc------------CCCccccccHHHHHHHHHHHHHcccHHHHHH
Confidence            67999999999999999999999  22  11  1222            278999999999999887766543       


Q ss_pred             --hhcC-----CCChhhHHHHHHHHHHH-HHHHHHHHHHHHHhc---cCCCCCcceeeeecccchhhHHHHHHHHHhh-h
Q 023147          154 --GLQG-----KFTPEALNWLFIKGLFG-WFMQFMLLKVTLLSL---GSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-S  221 (286)
Q Consensus       154 --G~~g-----~FsPE~Lg~~~S~~l~~-~~lEv~ilk~~~Y~l---~~~~~~~lDllAysGYKyV~ii~~ll~~l~~-~  221 (286)
                        +.+|     .|+  .+...++...+. |++++++.-+..+.=   +..-..++|+++.-||.-...+-+++..++. +
T Consensus       141 ~~t~~g~~~g~~f~--~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~  218 (290)
T KOG3114|consen  141 NGTLKGTAYGYDFG--LVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSS  218 (290)
T ss_pred             hccccceeeecccc--hHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHH
Confidence              2233     355  121111111111 123433333222221   1223467899999999877766666666664 5


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023147          222 YSYYFLILWMCMCMGVFLVKTMKRVLFA  249 (286)
Q Consensus       222 ~~yy~~~ly~~~a~~~Fl~RtLk~~~l~  249 (286)
                      ++=|+...-.....+.||.+++.-.+..
T Consensus       219 ~~~wvl~~~~~~~S~~~L~~~l~p~~~~  246 (290)
T KOG3114|consen  219 MVQWVLVGTALGLSGTFLAGTLWPAVRL  246 (290)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5556555555566678888888866543

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.024  Score=52.78  Aligned_cols=126  Identities=20%  Similarity=0.252  Sum_probs=86.7

Q ss_pred             eeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhhHHH
Q 023147           87 QVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNW  166 (286)
Q Consensus        87 ~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~  166 (286)
                      .+|-.-+++|-+.+|-|+++.+  .                +=++.+||=-|+.    ++|+.|..+=++||-|=-    
T Consensus        89 gInf~hI~~KT~~VLnP~r~~~--q----------------~i~~d~DlaGPlv----f~L~f~~flLl~gKi~Fg----  142 (249)
T KOG3103|consen   89 GINFDHIKQKTRAVLNPFRSAD--Q----------------SIMKDTDLAGPLV----FCLLFGLFLLLAGKIHFG----  142 (249)
T ss_pred             CCCHHHHHHHHhheecccccCc--e----------------EEecCcccccchH----HHHHHHHHHHhcCceEEE----
Confidence            5677889999999999998874  1                1146789988965    456666666677764422    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeeeecccchhhHHHHHHHHHhh---hhHHH----HHHHHHHHHHHHHH
Q 023147          167 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF---SYSYY----FLILWMCMCMGVFL  239 (286)
Q Consensus       167 ~~S~~l~~~~lEv~ilk~~~Y~l~~~~~~~lDllAysGYKyV~ii~~ll~~l~~---~~~yy----~~~ly~~~a~~~Fl  239 (286)
                         ....+|++-.+.+-..+-+|+.+++++....+..||.+.++++.-..+++.   +.+-|    +..+|++.|.+-++
T Consensus       143 ---yIygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lf  219 (249)
T KOG3103|consen  143 ---YIYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLF  219 (249)
T ss_pred             ---EEeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence               222344455555555555566789999999999999999999887777663   22222    45577777766665


Q ss_pred             HH
Q 023147          240 VK  241 (286)
Q Consensus       240 ~R  241 (286)
                      ++
T Consensus       220 v~  221 (249)
T KOG3103|consen  220 VS  221 (249)
T ss_pred             HH
Confidence            55

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=95.13  E-value=0.17  Score=46.54  Aligned_cols=120  Identities=21%  Similarity=0.379  Sum_probs=78.5

Q ss_pred             HHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 023147           93 VRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGL  172 (286)
Q Consensus        93 V~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~S~~l  172 (286)
                      .++|...++-|+.||.      -            +-.+.-||--|+.    |++|-++.+-+++|   -..|...    
T Consensus        72 i~~ks~~vl~p~~~~~------~------------~i~~d~DL~gPli----F~lL~sLfLsla~~---shFgyiy----  122 (227)
T COG5080          72 IKSKSDDVLGPFDNKA------F------------DILADCDLWGPLI----FILLYSLFLSLAGK---SHFGYIY----  122 (227)
T ss_pred             cccccceeeecccccc------h------------hhhhcccccccHH----HHHHHHHHHHhccc---ceeehhh----
Confidence            5679999999998773      0            1135578888864    66777777777777   2222222    


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCcceeeeecccchhhHHHHHHHHHhh------hhHHHH-HHHHHHHHHHHHHHH
Q 023147          173 FGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF------SYSYYF-LILWMCMCMGVFLVK  241 (286)
Q Consensus       173 ~~~~lEv~ilk~~~Y~l~~~~~~~lDllAysGYKyV~ii~~ll~~l~~------~~~yy~-~~ly~~~a~~~Fl~R  241 (286)
                      ++..+-.+.+.+.+-+++..+.++..-++..||.+.++++.-+.+++.      .++.+. ...|+..|.+-++-+
T Consensus       123 ~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~  198 (227)
T COG5080         123 GISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKS  198 (227)
T ss_pred             HHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333344455556677778999999999999999998887766542      123333 356777776665543

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=94.95  E-value=0.18  Score=41.73  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             CCCCCCcccchhHHHHHHHHHHHHhhhcCCCChh---------hHHHH-HHHH---HHHHHHHHHHHHHHHHhccCCCCC
Q 023147          129 DINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE---------ALNWL-FIKG---LFGWFMQFMLLKVTLLSLGSGEAP  195 (286)
Q Consensus       129 DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE---------~Lg~~-~S~~---l~~~~lEv~ilk~~~Y~l~~~~~~  195 (286)
                      +.+.+|+|.++++.++.+...-......+.+.++         ..... ....   ++.+++=..+++..+.+++ ++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~g-g~~~   96 (172)
T PF04893_consen   18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFG-GKGS   96 (172)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence            4578999999999999998877775444444433         11111 1111   1333344444455555555 7888


Q ss_pred             cceeeeecccchhhHHHHHHHHHh
Q 023147          196 LLDVVAYAGYTFTGLCLAVLGRIV  219 (286)
Q Consensus       196 ~lDllAysGYKyV~ii~~ll~~l~  219 (286)
                      +-|..+..||..++.++..+...+
T Consensus        97 ~~~~~~~~~ya~~P~~~~~~~~~~  120 (172)
T PF04893_consen   97 FKETFSVVGYALIPLLLGSLISII  120 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988777654

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.72  E-value=12  Score=34.88  Aligned_cols=103  Identities=21%  Similarity=0.310  Sum_probs=65.0

Q ss_pred             ChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhhHHHHH
Q 023147           89 NDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLF  168 (286)
Q Consensus        89 dnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~  168 (286)
                      |-.-|..||+.+++|--.++       +.+.     -    +..=||.-|+--.+-    .|+++-..+.+.-.   ..+
T Consensus        70 D~~~I~~kl~~Vl~P~py~~-------dk~~-----~----lRDwDlWGPl~~~~~----la~iL~~s~~~~~~---~vF  126 (234)
T KOG2946|consen   70 DLRAIGSKLKHVLYPHPYFE-------DKGQ-----L----LRDWDLWGPLFFCVF----LALILSLSGSVKSA---SVF  126 (234)
T ss_pred             HHHHHHhceEEEEccCCCcc-------cccc-----e----eecccccchhHHHHH----HHHHHHhhcCcccc---hhH
Confidence            45567889999999974331       1110     1    122388888653332    23333333333322   356


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCcceeeeecccchhhHHHHHH
Q 023147          169 IKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVL  215 (286)
Q Consensus       169 S~~l~~~~lEv~ilk~~~Y~l~~~~~~~lDllAysGYKyV~ii~~ll  215 (286)
                      ++.+++|.+-.+++.+-.-+++ ++.++..-++..||--.+..++.+
T Consensus       127 s~vf~i~wfG~~vvtln~kLLG-gnIs~fQsl~IlGYCLfPl~v~al  172 (234)
T KOG2946|consen  127 AVVFAILWFGAVVVTLNIKLLG-GNISFFQSLCILGYCLFPLVVAAL  172 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CceeEEeehhhhhhcccHHHHHHH
Confidence            6666676666666666666777 689999999999999999887753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00