Citrus Sinensis ID: 023151

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTEKVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKKAPETPKLEAV
ccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
ccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHEHccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHccccccccccccHHHHccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
MDLSDIAKKLGLSDSKQLIRKAAEIRRLCdvqfdssiigvGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQnsigfkneldiRELGIRFGCIRLIPLVQKGLSLFKDRftaalpasrktsadfsrpVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFgiakekkdprelkSNRELldvlpekrkfedveylsadeaevssykrhkkTEKVAYEEWKTSVLASNrnkakapckrttqaglnfqkkapetpkleav
mdlsdiakklglsdskQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALpasrktsadfsrpVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSetefasvsttmKDLCHDVFGiakekkdprelksnrelldvlpekrkfedveylsadeaevssykrhkktekvayeewktsvlasnrnkakapckrttqaglnfqkkapetpkleav
MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYlcakkhklkvdklklIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTEKVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKKAPETPKLEAV
*****************LIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIA**********************************************************************************************
****DIAKKLGLSDSKQLIRKAAEIRRLCDVQFDS*IIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTA*********ADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLC*****************************************************************************************************
MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTEKVAYEEWKTSVLAS************TQAGLNFQKKA*********
MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIA***********************************************EKVAYEEWKTSVLASNRNKAK**************************
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MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTEKVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKKAPETPKLEAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q9ZVH3284 Origin recognition comple yes no 0.982 0.989 0.651 1e-104
Q9Y5N6252 Origin recognition comple yes no 0.821 0.932 0.324 1e-21
Q2HJF3252 Origin recognition comple yes no 0.825 0.936 0.310 2e-21
Q9WUJ8262 Origin recognition comple yes no 0.842 0.919 0.311 4e-19
Q54P62 469 Origin recognition comple yes no 0.699 0.426 0.221 3e-08
Q9Y1B2257 Origin recognition comple yes no 0.472 0.525 0.236 2e-07
>sp|Q9ZVH3|ORC6_ARATH Origin recognition complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=2 Back     alignment and function desciption
 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/284 (65%), Positives = 230/284 (80%), Gaps = 3/284 (1%)

Query: 1   MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVI 60
           MD+SDI +KL L ++K LIRKAAEIRRLCD QFDSSIIGVGE+CKAVICLE+AA+R  +I
Sbjct: 1   MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATRLQII 60

Query: 61  FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFK 120
           FDR+ A+KLSGMSEKAY+RSFNSLQN IG K +L++REL ++FGC+R+I  VQ  LS +K
Sbjct: 61  FDRQAAVKLSGMSEKAYSRSFNSLQNVIGIKIKLNVRELAVQFGCVRVIKSVQNVLSSYK 120

Query: 121 DRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTT 180
           +RF A+LPASR+ +ADF+RPVFTA AFYLCAKK KLKVDKL+LIEVCGTSE+EF+ VST+
Sbjct: 121 ERFLASLPASRRANADFTRPVFTAAAFYLCAKKQKLKVDKLRLIEVCGTSESEFSCVSTS 180

Query: 181 MKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTE 240
           M DLC D  GI+KEKKD +++K NR+LLDVLP KR+ ED  Y S DE+  S YKRHKK E
Sbjct: 181 MTDLCFDCVGISKEKKDAKDVKGNRDLLDVLPGKRRLEDGGYSSGDES--SCYKRHKKME 238

Query: 241 KVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKKAPETPKLE 284
           +  YE+WK++V+ S +   +   KR  QA LNF KK+ ET +L+
Sbjct: 239 EAKYEDWKSTVVNSIKKNPEKGTKRVIQASLNFPKKS-ETKELQ 281
Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9Y5N6|ORC6_HUMAN Origin recognition complex subunit 6 OS=Homo sapiens GN=ORC6 PE=1 SV=1 Back     alignment and function description
>sp|Q2HJF3|ORC6_BOVIN Origin recognition complex subunit 6 OS=Bos taurus GN=ORC6 PE=2 SV=1 Back     alignment and function description
>sp|Q9WUJ8|ORC6_MOUSE Origin recognition complex subunit 6 OS=Mus musculus GN=Orc6 PE=1 SV=1 Back     alignment and function description
>sp|Q54P62|ORC6_DICDI Origin recognition complex subunit 6 OS=Dictyostelium discoideum GN=orcF PE=3 SV=1 Back     alignment and function description
>sp|Q9Y1B2|ORC6_DROME Origin recognition complex subunit 6 OS=Drosophila melanogaster GN=Orc6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
255562834287 Origin recognition complex subunit, puta 1.0 0.996 0.759 1e-127
225425712288 PREDICTED: origin recognition complex su 1.0 0.993 0.746 1e-125
363807540286 uncharacterized protein LOC100777539 [Gl 1.0 1.0 0.695 1e-116
53793723284 Probable origin recognition complex subu 0.972 0.978 0.725 1e-115
47900696284 Probable origin recognition complex subu 0.972 0.978 0.722 1e-115
356498254286 PREDICTED: origin recognition complex su 1.0 1.0 0.688 1e-115
142942524284 putative origin-recognition complex subu 0.972 0.978 0.715 1e-114
357486909287 Origin recognition complex subunit [Medi 1.0 0.996 0.689 1e-113
224114267285 predicted protein [Populus trichocarpa] 0.912 0.915 0.75 1e-112
47824941301 Probable origin recognition complex subu 0.972 0.923 0.677 1e-111
>gi|255562834|ref|XP_002522422.1| Origin recognition complex subunit, putative [Ricinus communis] gi|223538307|gb|EEF39914.1| Origin recognition complex subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/287 (75%), Positives = 256/287 (89%), Gaps = 1/287 (0%)

Query: 1   MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVI 60
           MDLS+IAKKLGLS+SK ++RKAAE+RRLCDVQFDSS+IG+GEVCKA+ICLE+AA+RF VI
Sbjct: 1   MDLSEIAKKLGLSESKHIVRKAAELRRLCDVQFDSSVIGIGEVCKAIICLEIAATRFQVI 60

Query: 61  FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFK 120
           FDR+ AI+LSGMSEKAYNRSFNSLQNS+G K +LDIRELGI+FGC+RLIP V+ GLSL+K
Sbjct: 61  FDRQAAIRLSGMSEKAYNRSFNSLQNSLGVKTKLDIRELGIQFGCVRLIPFVKNGLSLYK 120

Query: 121 DRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTT 180
            RF A+LPASR+ +ADF+RPVFTAVAFYLCAK+HKLK+DKLKLIEVCGTSE EF SVST+
Sbjct: 121 QRFLASLPASRRPTADFTRPVFTAVAFYLCAKRHKLKIDKLKLIEVCGTSEAEFKSVSTS 180

Query: 181 MKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTE 240
           MKDLCHDVFGI+KEKKDPRE+K NRELLDVLPEKRKFED  YLS D  E+SSYK+ K+ E
Sbjct: 181 MKDLCHDVFGISKEKKDPREVKCNRELLDVLPEKRKFEDGGYLSDDGPELSSYKKRKREE 240

Query: 241 KVAYEEWKTSVLASN-RNKAKAPCKRTTQAGLNFQKKAPETPKLEAV 286
           +VAYE+WK+SV++SN + KAK  CKRT Q  L+F KK PET  LEA+
Sbjct: 241 RVAYEDWKSSVMSSNEKGKAKGSCKRTKQTRLDFLKKVPETTGLEAL 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425712|ref|XP_002270584.1| PREDICTED: origin recognition complex subunit 6 [Vitis vinifera] gi|296086381|emb|CBI31970.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807540|ref|NP_001242146.1| uncharacterized protein LOC100777539 [Glycine max] gi|255635262|gb|ACU17985.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|53793723|gb|AAU93586.1| Probable origin recognition complex subunit 6, putative [Solanum demissum] gi|142942423|gb|ABO92997.1| putative origin-recognition complex subunit 6 [Solanum tuberosum] Back     alignment and taxonomy information
>gi|47900696|gb|AAT39295.1| Probable origin recognition complex subunit 6, putative [Solanum demissum] Back     alignment and taxonomy information
>gi|356498254|ref|XP_003517968.1| PREDICTED: origin recognition complex subunit 6-like [Glycine max] Back     alignment and taxonomy information
>gi|142942524|gb|ABO93015.1| putative origin-recognition complex subunit 6 [Solanum tuberosum] Back     alignment and taxonomy information
>gi|357486909|ref|XP_003613742.1| Origin recognition complex subunit [Medicago truncatula] gi|355515077|gb|AES96700.1| Origin recognition complex subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|224114267|ref|XP_002316713.1| predicted protein [Populus trichocarpa] gi|222859778|gb|EEE97325.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|47824941|gb|AAT38715.1| Probable origin recognition complex subunit 6, putative [Solanum demissum] gi|47824989|gb|AAT38762.1| Probable origin recognition complex subunit 6, putative [Solanum demissum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2202800284 ORC6 "origin recognition compl 0.982 0.989 0.605 9.9e-87
ZFIN|ZDB-GENE-030131-2976256 orc6 "origin recognition compl 0.828 0.925 0.280 9e-22
RGD|1311437262 Orc6 "origin recognition compl 0.860 0.938 0.275 4.4e-20
UNIPROTKB|Q2HJF3252 ORC6 "Origin recognition compl 0.835 0.948 0.255 1.4e-18
UNIPROTKB|Q9Y5N6252 ORC6 "Origin recognition compl 0.842 0.956 0.271 2.2e-18
UNIPROTKB|E2QYR5351 ORC6 "Uncharacterized protein" 0.853 0.695 0.268 2.5e-18
MGI|MGI:1929285262 Orc6 "origin recognition compl 0.853 0.931 0.284 7.5e-18
UNIPROTKB|E1BWZ4267 ORC6 "Uncharacterized protein" 0.814 0.872 0.274 9.5e-18
UNIPROTKB|H3BTQ7167 ORC6 "Origin recognition compl 0.475 0.814 0.333 2.9e-16
UNIPROTKB|H3BT22203 ORC6 "Origin recognition compl 0.699 0.985 0.259 6.2e-14
TAIR|locus:2202800 ORC6 "origin recognition complex protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 172/284 (60%), Positives = 216/284 (76%)

Query:     1 MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVI 60
             MD+SDI +KL L ++K LIRKAAEIRRLCD QFDSSIIGVGE+CKAVICLE+AA+R  +I
Sbjct:     1 MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATRLQII 60

Query:    61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFK 120
             FDR+ A+KLSGMSEKAY+RSFNSLQN IG K +L++REL ++FGC+R+I  VQ  LS +K
Sbjct:    61 FDRQAAVKLSGMSEKAYSRSFNSLQNVIGIKIKLNVRELAVQFGCVRVIKSVQNVLSSYK 120

Query:   121 DRFTAALPASRKTSADFSRPVFTAVAFYXXXXXXXXXXXXXXXIEVCGTSETEFASVSTT 180
             +RF A+LPASR+ +ADF+RPVFTA AFY               IEVCGTSE+EF+ VST+
Sbjct:   121 ERFLASLPASRRANADFTRPVFTAAAFYLCAKKQKLKVDKLRLIEVCGTSESEFSCVSTS 180

Query:   181 MKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTE 240
             M DLC D  GI+KEKKD +++K NR+LLDVLP KR+ ED  Y S DE+  S YKRHKK E
Sbjct:   181 MTDLCFDCVGISKEKKDAKDVKGNRDLLDVLPGKRRLEDGGYSSGDES--SCYKRHKKME 238

Query:   241 KVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKKAPETPKLE 284
             +  YE+WK++V+ S +   +   KR  QA LNF KK+ ET +L+
Sbjct:   239 EAKYEDWKSTVVNSIKKNPEKGTKRVIQASLNFPKKS-ETKELQ 281
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA;ISS
GO:0000808 "origin recognition complex" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
ZFIN|ZDB-GENE-030131-2976 orc6 "origin recognition complex, subunit 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1311437 Orc6 "origin recognition complex, subunit 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJF3 ORC6 "Origin recognition complex subunit 6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5N6 ORC6 "Origin recognition complex subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYR5 ORC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1929285 Orc6 "origin recognition complex, subunit 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWZ4 ORC6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H3BTQ7 ORC6 "Origin recognition complex subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BT22 ORC6 "Origin recognition complex subunit 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2HJF3ORC6_BOVINNo assigned EC number0.31030.82510.9365yesno
Q9ZVH3ORC6_ARATHNo assigned EC number0.65140.98250.9894yesno
Q9WUJ8ORC6_MOUSENo assigned EC number0.31170.84260.9198yesno
Q9Y5N6ORC6_HUMANNo assigned EC number0.32440.82160.9325yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
cd1158394 cd11583, Orc6_mid, Middle domain of the origin rec 6e-24
pfam05460297 pfam05460, ORC6, Origin recognition complex subuni 1e-14
>gnl|CDD|211425 cd11583, Orc6_mid, Middle domain of the origin recognition complex subunit 6 Back     alignment and domain information 
 Score = 92.7 bits (231), Expect = 6e-24
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 94  LDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKK 153
           L +R+L ++FGC   I   +K L+ +K  F A+    ++  ADFS P FTA AFYL  KK
Sbjct: 3   LSVRDLAVQFGCKEAIEEAEKLLNRYKLPFLAS---EQRRVADFSLPQFTAAAFYLACKK 59

Query: 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDV 188
            K+KVDK KL+EV G   + F  +  +M+ LC D+
Sbjct: 60  LKVKVDKSKLLEVSGVDPSIFDRLCASMEKLCKDI 94

Orc6 is a subunit of the origin recognition complex in eukaryotes, and it may be involved in binding to DNA. This model describes the central or middle domain of Orc6, whose structure resembles that of TFIIB, a DNA-binding transcription factor. Orc6 appears to form distinct complexes with DNA, and a putative DNA-binding site has been identified. Length = 94
>gnl|CDD|218595 pfam05460, ORC6, Origin recognition complex subunit 6 (ORC6) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
KOG4557262 consensus Origin recognition complex, subunit 6 [R 100.0
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 100.0
PRK00423310 tfb transcription initiation factor IIB; Reviewed 100.0
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.96
KOG1598 521 consensus Transcription initiation factor TFIIIB, 99.7
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 99.6
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 99.49
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.33
PF05460353 ORC6: Origin recognition complex subunit 6 (ORC6); 99.1
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.02
TIGR00569305 ccl1 cyclin ccl1. University). 98.91
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.64
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.63
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.63
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.42
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.28
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 98.21
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 98.1
KOG0835367 consensus Cyclin L [General function prediction on 97.77
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 97.49
KOG1598521 consensus Transcription initiation factor TFIIIB, 96.62
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 96.33
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 96.16
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 95.99
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 95.4
TIGR00569305 ccl1 cyclin ccl1. University). 94.52
KOG4557262 consensus Origin recognition complex, subunit 6 [R 93.04
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 92.64
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 91.86
COG1191247 FliA DNA-directed RNA polymerase specialized sigma 90.26
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 89.49
COG5024440 Cyclin [Cell division and chromosome partitioning] 89.27
TIGR02393238 RpoD_Cterm RNA polymerase sigma factor RpoD, C-ter 88.6
smart0034284 HTH_ARAC helix_turn_helix, arabinose operon contro 87.56
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 86.74
KOG0835367 consensus Cyclin L [General function prediction on 85.31
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 85.12
PF0032532 Crp: Bacterial regulatory proteins, crp family; In 85.02
cd0657190 Bac_DnaA_C C-terminal domain of bacterial DnaA pro 83.8
TIGR02997298 Sig70-cyanoRpoD RNA polymerase sigma factor, cyano 83.13
PF1354576 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 82.78
PRK07405317 RNA polymerase sigma factor SigD; Validated 82.45
PRK07598415 RNA polymerase sigma factor SigC; Validated 82.12
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 80.39
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=9.6e-59  Score=412.88  Aligned_cols=255  Identities=58%  Similarity=0.948  Sum_probs=227.7

Q ss_pred             CcHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHH
Q 023151            1 MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRS   80 (286)
Q Consensus         1 mei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~   80 (286)
                      |.|.+|+.+|||.+.|.++++|+||.|++..+|++++.|.+++|++++|+++|+.+++||||++.++++||++++.|.++
T Consensus         1 ~lI~~l~~klgL~~ep~~lrKa~E~~RL~~~~~~~~~~~v~E~~kaV~CldlAa~~l~i~fDr~~avKLSGl~k~~Y~~~   80 (262)
T KOG4557|consen    1 MLISDLGRKLGLDNEPLLLRKAAEIRRLCDAQFDSSIIGVGEICKAVICLDLAATRLQIIFDRQAAVKLSGLSKKAYSRS   80 (262)
T ss_pred             CcHHHHHHhcCCccChHHHHHHHHHHHHHHhhccCccccccchhHHHHhHHHHHHHhcccccHHHHHHhccccHHHHHHH
Confidence            78999999999977789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcHHHHHHHhCCcchHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCH
Q 023151           81 FNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDK  160 (286)
Q Consensus        81 yr~l~~~LgL~~~~~I~~ia~qlg~s~v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ  160 (286)
                      +++|+++||||..++|++||+||||.+|++.|++||..|+++    ||+.++.++||++|+|++||||+||+++|.|||+
T Consensus        81 ~~sfe~llgln~~~~VrdlaVQfgc~evi~~a~~vl~syk~~----lpaT~~~~~D~SrP~ft~aA~~~ack~lKlKVdK  156 (262)
T KOG4557|consen   81 FNSFENLLGLNIKLNVRDLAVQFGCVEVIKSAQNVLSSYKER----LPATRRANADFSRPVFTAAAFYLACKKLKLKVDK  156 (262)
T ss_pred             HHHHHHHhcchhhcCHHHHHHHHhHHHHHHHHHHHHHHHHhc----CchhhhcCCcccchHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999999999999999999999999988864    7889999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhhh------hhhhcccccCChhhhhccchhcccCcccccchhhhhcchhhhhhchhc
Q 023151          161 LKLIEVCGTSETEFASVSTTMKDLCH------DVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYK  234 (286)
Q Consensus       161 ~kla~~sgvt~vt~rnr~ke~~~~c~------d~~~i~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~k  234 (286)
                      .+++++||+++.+|+.++++|+.--.      |-+++++.+++.+.+++|+++++.+|.|+                 ||
T Consensus       157 ~kli~~sg~~~s~F~~l~kqler~~~qv~~e~~~V~~s~~k~~k~~v~~n~~~~~~~~~k~-----------------hk  219 (262)
T KOG4557|consen  157 LKLIEVSGTSESEFSCLSKQLERNYKQVSTEMDCVGISKEKKDKKDVKGNRDLLDVLPGKR-----------------HK  219 (262)
T ss_pred             hhcccccCCCHHHHHHHHHHHHHHHHHhcCCccccCCChhhhhhhhccCcHHHhhhccccC-----------------CC
Confidence            99999999999999999999975221      22344555555555555555555555552                 55


Q ss_pred             ccCccc-hhHHHHHHHHHhhhhhhcccCCcccccccccccccc
Q 023151          235 RHKKTE-KVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKK  276 (286)
Q Consensus       235 ~~~~~~-~~~Ye~WK~~il~~~~~~~~~~~~~~~~~~~~~~~~  276 (286)
                      +....+ ++|||+||++||++++.++|...++..|+.+||+++
T Consensus       220 p~~~~~~~~dYE~WK~~vl~~a~~~~k~~~~~~~~~~~~~~~~  262 (262)
T KOG4557|consen  220 PDGGYSEEADYEDWKSTVLNSAKKNPKKGTKRVIQASLNFPKK  262 (262)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHhchHHhHHHHHHHhhccccC
Confidence            555444 789999999999999999999999999999999874

>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF05460 ORC6: Origin recognition complex subunit 6 (ORC6); InterPro: IPR008721 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 [] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain Back     alignment and domain information
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins Back     alignment and domain information
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family Back     alignment and domain information
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A Back     alignment and domain information
>PRK07405 RNA polymerase sigma factor SigD; Validated Back     alignment and domain information
>PRK07598 RNA polymerase sigma factor SigC; Validated Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3m03_A95 ORC6, origin recognition complex subunit 6; helix 3e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Length = 95 Back     alignment and structure
 Score =  100 bits (250), Expect = 3e-27
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 92  NELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCA 151
           + + IR+L ++F CI  + +  K L  ++    ++LP +++   D SRP+FT+ A     
Sbjct: 2   SNIGIRDLAVQFSCIEAVNMASKILKSYE----SSLPQTQQVDLDLSRPLFTSAALLSAC 57

Query: 152 KKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDV 188
           K  KLKVDK K++   G  +  F  +   ++ +   V
Sbjct: 58  KILKLKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQV 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
1ais_B200 TFB TFIIB, protein (transcription initiation facto 100.0
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.96
3m03_A95 ORC6, origin recognition complex subunit 6; helix 99.89
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.78
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.67
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.65
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.65
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.61
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.61
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.58
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.53
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.48
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.48
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.43
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.43
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.35
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.31
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.2
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.57
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 98.36
3m03_A95 ORC6, origin recognition complex subunit 6; helix 97.91
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 97.89
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 97.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 97.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 96.65
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 96.62
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 96.56
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 96.36
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 96.34
2ivx_A257 Cyclin-T2; transcription regulation, cell division 96.17
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 95.85
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 95.6
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 95.27
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 94.28
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 92.84
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 89.82
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 89.2
4ell_A411 Retinoblastoma-associated protein; cyclin fold, tu 87.84
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 85.77
2qdj_A304 Retinoblastoma-associated protein; cyclin fold, cy 83.33
2a6c_A83 Helix-turn-helix motif; putative transcriptional r 82.35
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
Probab=100.00  E-value=5.5e-33  Score=242.49  Aligned_cols=169  Identities=16%  Similarity=0.184  Sum_probs=159.1

Q ss_pred             cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151            2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSF   81 (286)
Q Consensus         2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~y   81 (286)
                      +|.+++.+||||+  .|++.|.+|||++..+  ++++|++.+++++||||+|||..|+|+++++++.++|++++++.++|
T Consensus        15 ~I~~~~~~L~L~~--~v~~~A~~l~~~~~~~--~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~   90 (200)
T 1ais_B           15 ELDRITAQLKLPR--HVEEEAARLYREAVRK--GLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSY   90 (200)
T ss_dssp             HHHHHHHHHTCCH--HHHHHHHHHHHHHHTT--TTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCH--HHHHHHHHHHHHHHhC--CCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence            5899999999995  8999999999999999  89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCC-------cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHh
Q 023151           82 NSLQNSIGFKNEL-------DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKK  153 (286)
Q Consensus        82 r~l~~~LgL~~~~-------~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~  153 (286)
                      +.|.+.||++.++       +|++||+.||++. +.+.|.+|++.+.+.   ++..|+      +|.++||||+|+||+.
T Consensus        91 ~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~---~~~~gr------~P~~iAaAaly~A~~~  161 (200)
T 1ais_B           91 RFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKR---GLTSGK------SPAGLVAAALYIASLL  161 (200)
T ss_dssp             HHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT---TCCTTS------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc---CcccCC------CHHHHHHHHHHHHHHH
Confidence            9999999987532       7999999999998 999999999998876   345677      6999999999999999


Q ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151          154 HKLKVDKLKLIEVCGTSETEFASVSTTMKD  183 (286)
Q Consensus       154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~  183 (286)
                      +|.++|+++|++++||+++||+++|++|.+
T Consensus       162 ~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~  191 (200)
T 1ais_B          162 EGEKRTQREVAEVARVTEVTVRNRYKELVE  191 (200)
T ss_dssp             TTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999965
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Back     alignment and structure
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} Back     alignment and structure
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.75
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 99.75
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 99.72
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 99.64
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 99.62
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 99.62
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.46
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 99.45
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 97.18
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 97.13
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.92
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.45
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 96.23
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.26
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 95.25
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 94.72
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 94.01
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 93.97
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 93.82
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 93.23
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 93.03
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 92.97
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 92.76
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 92.34
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 91.95
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 91.31
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 90.98
d3e5ua180 Chlorophenol reduction protein CprK {Desulfitobact 88.95
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 88.54
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 88.01
d1i5za169 Catabolite gene activator protein (CAP), C-termina 87.21
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 87.16
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 87.11
d2gaua181 Transcriptional regulator PG0396, C-terminal domai 87.01
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 83.46
d2hoea162 N-acetylglucosamine kinase {Thermotoga maritima [T 83.45
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 83.14
d1ft9a180 CO-sensing protein CooA, C-terminal domain {Rhodos 82.68
d1l3la165 Quorum-sensing transcription factor TraR, C-termin 81.78
d1z6ra170 Mlc protein N-terminal domain {Escherichia coli [T 81.76
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 81.52
d1zyba173 Probable transcription regulator BT4300, C-termina 81.51
d2zcwa182 Transcriptional regulator TTHA1359, C-terminal dom 81.26
d1fsea_67 Germination protein GerE {Bacillus subtilis [TaxId 80.67
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 80.37
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Transcription factor IIB (TFIIB), core domain
domain: Transcription factor IIB (TFIIB), core domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=133.42  Aligned_cols=87  Identities=20%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151            2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSF   81 (286)
Q Consensus         2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~y   81 (286)
                      +|++++++||||+  .|.++|.+||+++...  ++.+|++..+++|||||+|||.+|+|+++.++++.+|++++.+.++|
T Consensus         8 ~I~~~~~~L~L~~--~i~~~A~~i~~~~~~~--~~~~Gr~~~~i~AA~iY~acr~~~~p~t~~eIa~~~~i~~~~i~k~~   83 (95)
T d1vola1           8 EITTMADRINLPR--NKVDRTNNLFRQAYEQ--KSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCF   83 (95)
T ss_dssp             HHHHHHHHTTCCH--HHHHHHHHHHHHHHHT--CCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTTCSCHHHHHHHH
T ss_pred             HHHHHHHHcCcCH--HHHHHHHHHHHHHHHh--hhhcCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHH
Confidence            5899999999995  7999999999999998  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 023151           82 NSLQNSIGFKN   92 (286)
Q Consensus        82 r~l~~~LgL~~   92 (286)
                      +.|.+.|+++.
T Consensus        84 k~i~~~L~~~v   94 (95)
T d1vola1          84 KLILKALETSV   94 (95)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHHCCcC
Confidence            99999999864
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure