Citrus Sinensis ID: 023155

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MFDFFRSPAKPKQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKGRDHYKNDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPDHSSKKGVNKGEREKLGVAPVPKPRSAGRTPPPEPANAMQKVETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK
ccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccccccccHHHHHHccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mfdffrspakpkqktvnpvaasddecdkkaaikparrtssepvlitpdfsndhkgrdhykndfrdsgglenqsvQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNnlggmfsktwkpkktrniagpldtpdhsskkgvnkgereklgvapvpkprsagrtpppepanamqKVETGIYLRVIKTrwrkpkqddaLSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK
mfdffrspakpkqktvnpvaasddecdkkaaikparrtssepvlitpdfsndhkgrdHYKNDFRDSGGLENQSVQELENYAVYKaeettnsvnNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGgmfsktwkpkktrniagpldtpdhsskkgvnkgereklgvapvpkprsagrtpppepanamqkveTGIYLRVIKTrwrkpkqddalSDLSNILGDLKGMAVDMGSELDRQNKSLDHLdadvdelnsrvkganqrarhllgk
MFDFFRSPAKPKQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKGRDHYKNDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPDHSSKKGVNKGEREKLGVAPVPKPRSAGRTPPPEPANAMQKVETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK
*****************************************************************************ENYAVYKAEETTNSVNNCLKIAENIR*********************************************************************************************************VETGIYLRVIKTRWRK************ILG***********************************************
***************************************************************************************************ENIR*DATKTLDMLHQQGEQIHRTHNMVT**********KQLNNLGGMFSKTWKPKKTRNIAGPLDT**************************************************************DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG*
*************************CDKKAAIKPARRTSSEPVLITPDFSNDHKGRDHYKNDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPDHSSKKGVNKGEREKLGVAPV****************AMQKVETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK
****************************************************************DSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPD********************************************IYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK
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MFDFFRSPAKPKQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKGRDHYKNDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCxxxxxxxxxxxxxxxxxxxxxGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPDHSSKKGVNKGEREKLGVAPVPKPRSAGRTPPPEPANAMQKVETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q9LMG8263 Putative SNAP25 homologou yes no 0.916 0.996 0.627 6e-91
Q9S7P9300 SNAP25 homologous protein no no 0.961 0.916 0.549 1e-79
Q9SD96251 SNAP25 homologous protein no no 0.741 0.844 0.519 9e-58
Q5TZ66204 Synaptosomal-associated p yes no 0.657 0.921 0.287 2e-15
P60881206 Synaptosomal-associated p yes no 0.678 0.941 0.283 3e-15
Q5R1X1206 Synaptosomal-associated p yes no 0.678 0.941 0.283 3e-15
P60879206 Synaptosomal-associated p yes no 0.678 0.941 0.283 3e-15
P60877206 Synaptosomal-associated p yes no 0.678 0.941 0.283 3e-15
P60880206 Synaptosomal-associated p yes no 0.678 0.941 0.283 3e-15
P60878206 Synaptosomal-associated p yes no 0.678 0.941 0.283 3e-15
>sp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1 Back     alignment and function desciption
 Score =  334 bits (856), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 180/287 (62%), Positives = 208/287 (72%), Gaps = 25/287 (8%)

Query: 1   MFDFFRSPAKPKQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKGRDHYK 60
           MF FF+SP   K     P  +S++   K   I   RRTSSEP+LITPDF +D    D YK
Sbjct: 1   MFGFFKSPGNNKL----PNESSNN---KGGTITAGRRTSSEPILITPDFDDD----DKYK 49

Query: 61  NDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQI 120
           N F DSGGL++Q+ +ELE YAVYKAEETT  VNNCLKIAE+IR D  +TL+MLHQQGEQI
Sbjct: 50  NGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQGEQI 109

Query: 121 HRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPDHSSKKGVN-KGE 179
           +RTH M  D +KDLS+GEK LNNLGGMFSK WKPKKT+NI GP+ TPD  SKK  N K E
Sbjct: 110 NRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENHKEE 169

Query: 180 REKLGVAPVPKPRSAGRTPPPEPANAMQKVETGIYLRVIKTRWRKPKQDDALSDLSNILG 239
           REKLG+    K RS+ +    +P NA+QKVE             K KQDD LSDLS+ILG
Sbjct: 170 REKLGLG--AKGRSSSQPALDQPTNALQKVE-----------QEKAKQDDGLSDLSDILG 216

Query: 240 DLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286
           DLK MAVDMGSE+D+QNK+LDHL  DVDELNSRV+GANQRARHLL K
Sbjct: 217 DLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGANQRARHLLSK 263
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1 Back     alignment and function description
>sp|Q9SD96|SNP29_ARATH SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1 Back     alignment and function description
>sp|Q5TZ66|SN25A_DANRE Synaptosomal-associated protein 25-A OS=Danio rerio GN=snap25a PE=2 SV=1 Back     alignment and function description
>sp|P60881|SNP25_RAT Synaptosomal-associated protein 25 OS=Rattus norvegicus GN=Snap25 PE=1 SV=1 Back     alignment and function description
>sp|Q5R1X1|SNP25_PANTR Synaptosomal-associated protein 25 OS=Pan troglodytes GN=SNAP25 PE=2 SV=1 Back     alignment and function description
>sp|P60879|SNP25_MOUSE Synaptosomal-associated protein 25 OS=Mus musculus GN=Snap25 PE=1 SV=1 Back     alignment and function description
>sp|P60877|SNP25_MACMU Synaptosomal-associated protein 25 OS=Macaca mulatta GN=SNAP25 PE=2 SV=1 Back     alignment and function description
>sp|P60880|SNP25_HUMAN Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1 SV=1 Back     alignment and function description
>sp|P60878|SNP25_CHICK Synaptosomal-associated protein 25 OS=Gallus gallus GN=SNAP25 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
449434734302 PREDICTED: putative SNAP25 homologous pr 0.958 0.907 0.656 1e-98
356502606280 PREDICTED: putative SNAP25 homologous pr 0.912 0.932 0.634 4e-94
224101435282 predicted protein [Populus trichocarpa] 0.947 0.960 0.680 6e-94
356497961280 PREDICTED: putative SNAP25 homologous pr 0.912 0.932 0.628 1e-93
297844290264 synaptosomal-associated protein 30 [Arab 0.916 0.992 0.635 1e-89
15222976263 synaptosomal-associated protein, 29kDa [ 0.916 0.996 0.627 3e-89
359472526281 PREDICTED: SNAP25 homologous protein SNA 0.947 0.964 0.606 2e-87
147798404280 hypothetical protein VITISV_032084 [Viti 0.947 0.967 0.602 5e-87
255547273305 synaptosomal associated protein, putativ 0.933 0.875 0.595 9e-87
329025170306 SNAP33 [Solanum chacoense] 0.933 0.872 0.581 2e-85
>gi|449434734|ref|XP_004135151.1| PREDICTED: putative SNAP25 homologous protein SNAP30-like [Cucumis sativus] gi|449478367|ref|XP_004155298.1| PREDICTED: putative SNAP25 homologous protein SNAP30-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/314 (65%), Positives = 226/314 (71%), Gaps = 40/314 (12%)

Query: 1   MFDFFRSPAK-PKQKTVNPVAA---------SDDECDKKAAIKPARRTSSEPVLITPD-- 48
           MF F +SPAK  KQ +V+P  +         SD   D K  +  ARRTSSEPVL  P   
Sbjct: 1   MFSFMKSPAKVTKQNSVDPELSTGSGTNPFDSDTGPDAKQTLNAARRTSSEPVLPMPKAN 60

Query: 49  -FSND-------HKG-------RDHYKNDFRDSGGLENQSVQELENYAVYKAEETTNSVN 93
            F +D        KG       +D YKNDFRDSGGLENQSVQELENYAVYKAEETT SVN
Sbjct: 61  PFDDDDDTGFVGRKGTATSSGSKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVN 120

Query: 94  NCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWK 153
           NCLKIAE+IREDATKTLDMLH+QGEQI RTH M  D +KDLSKGEK LNNLGGMFSK WK
Sbjct: 121 NCLKIAEDIREDATKTLDMLHKQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWK 180

Query: 154 PKKTRNIAGPLDTPDHSSKKGV-NKGEREKLGVAPVPKPRSAGRTPPPEPANAMQKVETG 212
           PKKT+ I GPL T DHSS K   NK +REKLG++   K +SA +TPP EP+ A+QKVE  
Sbjct: 181 PKKTKEITGPLITADHSSGKTENNKEQREKLGLS-TGKKQSATKTPPSEPSGAIQKVEV- 238

Query: 213 IYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSR 272
                      K KQDDALSDLSNILGDLK MAVDMGSELDRQNK+LDHL  DVDELNSR
Sbjct: 239 ----------EKEKQDDALSDLSNILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSR 288

Query: 273 VKGANQRARHLLGK 286
           VKGANQRARHL+GK
Sbjct: 289 VKGANQRARHLIGK 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356502606|ref|XP_003520109.1| PREDICTED: putative SNAP25 homologous protein SNAP30-like [Glycine max] Back     alignment and taxonomy information
>gi|224101435|ref|XP_002312278.1| predicted protein [Populus trichocarpa] gi|118483398|gb|ABK93599.1| unknown [Populus trichocarpa] gi|222852098|gb|EEE89645.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356497961|ref|XP_003517824.1| PREDICTED: putative SNAP25 homologous protein SNAP30-like [Glycine max] Back     alignment and taxonomy information
>gi|297844290|ref|XP_002890026.1| synaptosomal-associated protein 30 [Arabidopsis lyrata subsp. lyrata] gi|297335868|gb|EFH66285.1| synaptosomal-associated protein 30 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222976|ref|NP_172842.1| synaptosomal-associated protein, 29kDa [Arabidopsis thaliana] gi|27805725|sp|Q9LMG8.1|SNP30_ARATH RecName: Full=Putative SNAP25 homologous protein SNAP30; Short=AtSNAP30; AltName: Full=Synaptosomal-associated protein SNAP25-like 3 gi|8778388|gb|AAF79396.1|AC068197_6 F16A14.10 [Arabidopsis thaliana] gi|332190959|gb|AEE29080.1| synaptosomal-associated protein, 29kDa [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359472526|ref|XP_002269423.2| PREDICTED: SNAP25 homologous protein SNAP33 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147798404|emb|CAN70141.1| hypothetical protein VITISV_032084 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547273|ref|XP_002514694.1| synaptosomal associated protein, putative [Ricinus communis] gi|223546298|gb|EEF47800.1| synaptosomal associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|329025170|gb|AEB71568.1| SNAP33 [Solanum chacoense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2014824263 SNAP30 "soluble N-ethylmaleimi 0.916 0.996 0.627 1.7e-84
TAIR|locus:2159426300 SNAP33 "soluble N-ethylmaleimi 0.783 0.746 0.623 6.3e-69
TAIR|locus:2142853251 SNAP29 "synaptosomal-associate 0.867 0.988 0.487 6.1e-55
UNIPROTKB|P60878206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
UNIPROTKB|Q17QQ3206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
UNIPROTKB|E2RPM2206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
UNIPROTKB|P60880206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
UNIPROTKB|I3LAV3206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
UNIPROTKB|P60877206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
UNIPROTKB|Q5R1X1206 SNAP25 "Synaptosomal-associate 0.297 0.412 0.348 9e-19
TAIR|locus:2014824 SNAP30 "soluble N-ethylmaleimide-sensitive factor adaptor protein 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 180/287 (62%), Positives = 208/287 (72%)

Query:     1 MFDFFRSPAKPKQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKGRDHYK 60
             MF FF+SP   K     P  +S++   K   I   RRTSSEP+LITPDF +D    D YK
Sbjct:     1 MFGFFKSPGNNKL----PNESSNN---KGGTITAGRRTSSEPILITPDFDDD----DKYK 49

Query:    61 NDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQI 120
             N F DSGGL++Q+ +ELE YAVYKAEETT  VNNCLKIAE+IR D  +TL+MLHQQGEQI
Sbjct:    50 NGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQGEQI 109

Query:   121 HRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDTPDHSSKKGVN-KGE 179
             +RTH M  D +KDLS+GEK LNNLGGMFSK WKPKKT+NI GP+ TPD  SKK  N K E
Sbjct:   110 NRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENHKEE 169

Query:   180 REKLGVAPVPKPRSAGRTPPPEPANAMQKVETGIYLRVIKTRWRKPKQDDALSDLSNILG 239
             REKLG+    K RS+ +    +P NA+QKVE             K KQDD LSDLS+ILG
Sbjct:   170 REKLGLGA--KGRSSSQPALDQPTNALQKVEQ-----------EKAKQDDGLSDLSDILG 216

Query:   240 DLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286
             DLK MAVDMGSE+D+QNK+LDHL  DVDELNSRV+GANQRARHLL K
Sbjct:   217 DLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGANQRARHLLSK 263
GO:0005634 "nucleus" evidence=ISM
GO:0005484 "SNAP receptor activity" evidence=ISS
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0016192 "vesicle-mediated transport" evidence=RCA;TAS
GO:0000910 "cytokinesis" evidence=RCA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2159426 SNAP33 "soluble N-ethylmaleimide-sensitive factor adaptor protein 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142853 SNAP29 "synaptosomal-associated protein SNAP25-like 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P60878 SNAP25 "Synaptosomal-associated protein 25" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QQ3 SNAP25 "Synaptosomal-associated protein 25" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPM2 SNAP25 "Synaptosomal-associated protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P60880 SNAP25 "Synaptosomal-associated protein 25" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LAV3 SNAP25 "Synaptosomal-associated protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P60877 SNAP25 "Synaptosomal-associated protein 25" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R1X1 SNAP25 "Synaptosomal-associated protein 25" [Pan troglodytes (taxid:9598)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LMG8SNP30_ARATHNo assigned EC number0.62710.91600.9961yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
pfam0573962 pfam05739, SNARE, SNARE domain 2e-13
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 3e-10
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 3e-09
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 2e-04
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 0.004
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 23/58 (39%), Positives = 39/58 (67%)

Query: 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284
           +D+AL +L + +G+LK + +DMG E++ Q + LD +D +VD   SRV+ AN+R +   
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAA 58

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 100.0
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.19
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 98.95
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.93
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 98.79
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 98.78
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 98.43
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 98.16
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 97.6
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 97.02
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 96.82
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 95.68
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 94.7
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 94.66
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 92.57
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 89.49
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 84.84
PRK0084677 hypothetical protein; Provisional 80.93
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 80.9
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-44  Score=330.64  Aligned_cols=259  Identities=32%  Similarity=0.443  Sum_probs=192.8

Q ss_pred             CCCCCCCCCCCccchhhhhhcccCCCCCCCCCCCCCCCCCCccc-----cccccCcCCCCCccchhhHHHHHHHHHHHHH
Q 023155           12 KQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKG-----RDHYKNDFRDSGGLENQSVQELENYAVYKAE   86 (286)
Q Consensus        12 ~~~~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~q~vq~l~~~~~~~~q   86 (286)
                      +++..|+| +.+.++++.+++.+.-      ....+|++++...     ...++..+.++++.+++.+++|++++.++++
T Consensus         3 ~~~~~~~~-~~~e~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~e~~~~~~   75 (273)
T KOG3065|consen    3 RPSKNNAF-DTEEHSWRELALSQGL------MRGSNDRDDDYARVFAHSGQLDKMELVDSGEEEDEEVDELEQEIESTAQ   75 (273)
T ss_pred             Cccccccc-ccchhhhHhhccchhh------hccCCCccccccccccchhhHHHhccccccccchHHHHHHHHHHhhhhh
Confidence            45678999 8888888888887711      1112344443211     1233666788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcccccCCCCCccccCcCCCCCC
Q 023155           87 ETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDT  166 (286)
Q Consensus        87 et~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~F~~~~~~~k~~~~~~p~~~  166 (286)
                      +|++||++||++|+|++++|++|++||++|+|||+|||.+||+|+.+|++++++|++|+++|+..|+|++++.+.+|...
T Consensus        76 eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~~~~p~~~~~~~~p~e~  155 (273)
T KOG3065|consen   76 ESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGLLVKPFKKKRVREPTET  155 (273)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCccccCCCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999988888877666555443


Q ss_pred             CCCCcccccchhhhhccCCCCCCC--CCCCCCCCCCCcchhhhhhhccchh-----hhhccccccchhhhhHHHHHHHHH
Q 023155          167 PDHSSKKGVNKGEREKLGVAPVPK--PRSAGRTPPPEPANAMQKVETGIYL-----RVIKTRWRKPKQDDALSDLSNILG  239 (286)
Q Consensus       167 ~~~~~k~~~~~eq~~~~g~~~~P~--~~~~~r~~~~~~~~~~~k~~~g~y~-----~~~~~d~~~~eqD~~Ld~Ls~~l~  239 (286)
                      ..... ..+.....+. ..+.+|.  .....+.. +.....    ..+.|+     ...++++.+++||+||++|+.+|+
T Consensus       156 ~~~~~-~~~~~~~~e~-~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~q~~~~~edeiD~NL~qis~~lg  228 (273)
T KOG3065|consen  156 SLKQR-SISKRRMDET-LIRAKPGELRSAAERSP-SEKRTG----LQGARSSLKARAYQTEPAAEDEIDENLDQLSAILG  228 (273)
T ss_pred             ccccc-CcchhhhhHH-HHhhhcccccccccccc-cccCcC----CcccchhhhhhhhccCChhhhHHHhhHHHHHHHHH
Confidence            21100 0111111110 0111121  01111100 001111    112233     233566688899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155          240 DLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL  284 (286)
Q Consensus       240 ~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll  284 (286)
                      +||+||++||.||+.||++||+|+++||+++.+|+.+|+||++||
T Consensus       229 ~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  229 RLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999996

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK00846 hypothetical protein; Provisional Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1sfc_D87 Neuronal Synaptic Fusion Complex Length = 87 3e-09
3zur_A 960 Crystal Structure Of An Engineered Botulinum Neurot 2e-08
1n7s_D66 High Resolution Structure Of A Truncated Neuronal S 6e-08
1urq_D69 Crystal Structure Of Neuronal Q-Snares In Complex W 6e-08
3hd7_D68 Helical Extension Of The Neuronal Snare Complex Int 7e-08
1kil_D66 Three-Dimensional Structure Of The ComplexinSNARE C 2e-07
1xtg_B59 Crystal Structure Of Neurotoxin BontA COMPLEXED WIT 3e-07
3rk2_D65 Truncated Snare Complex Length = 65 3e-07
1l4a_D87 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 5e-06
3zus_A 927 Crystal Structure Of An Engineered Botulinum Neurot 6e-05
1jth_A82 Crystal Structure And Biophysical Properties Of A C 2e-04
1n7s_C79 High Resolution Structure Of A Truncated Neuronal S 6e-04
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 207 QKVETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADV 266
           Q   +G ++R +    R+ + D+ L  +S I+G+L+ MA+DMG+E+D QN+ +D +    
Sbjct: 7   QMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKA 66
Query: 267 DELNSRVKGANQRARHLLG 285
           D   +R+  ANQRA  +LG
Sbjct: 67  DSNKTRIDEANQRATKMLG 85
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A Length = 960 Back     alignment and structure
>pdb|1N7S|D Chain D, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 66 Back     alignment and structure
>pdb|1URQ|D Chain D, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 69 Back     alignment and structure
>pdb|3HD7|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 68 Back     alignment and structure
>pdb|1KIL|D Chain D, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 66 Back     alignment and structure
>pdb|1XTG|B Chain B, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH Synaptosomal-Associated Protein 25 Length = 59 Back     alignment and structure
>pdb|3RK2|D Chain D, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 87 Back     alignment and structure
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A Length = 927 Back     alignment and structure
>pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 82 Back     alignment and structure
>pdb|1N7S|C Chain C, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 6e-22
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 2e-21
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 2e-20
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 7e-13
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 3e-12
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 5e-11
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 4e-10
3b5n_D64 Protein transport protein SEC9; snare complex, syn 3e-09
2nps_C81 Vesicle transport through interaction with T- snar 4e-05
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 9e-05
3b5n_C70 Protein transport protein SEC9; snare complex, syn 1e-04
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 2e-04
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66 Back     alignment and structure
 Score = 85.9 bits (213), Expect = 6e-22
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282
           R+ + D+ L  +S I+G+L+ MA+DMG+E+D QN+ +D +    D   +R+  ANQRA  
Sbjct: 4   RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63

Query: 283 LLG 285
           +LG
Sbjct: 64  MLG 66
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Length = 79 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 83 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 81 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 70 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Length = 54 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 99.89
3b5n_C70 Protein transport protein SEC9; snare complex, syn 99.87
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 99.84
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 99.8
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 99.8
3b5n_D64 Protein transport protein SEC9; snare complex, syn 99.73
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 99.72
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 99.71
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 99.6
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 99.56
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 99.42
2nps_C81 Vesicle transport through interaction with T- snar 99.14
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 96.92
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 96.03
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 95.89
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 95.84
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 95.79
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 95.57
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 95.32
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 94.83
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 94.58
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 94.3
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 94.15
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 93.86
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 93.39
3b5n_D64 Protein transport protein SEC9; snare complex, syn 92.77
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 92.52
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 92.33
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 90.65
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 88.78
3b5n_C70 Protein transport protein SEC9; snare complex, syn 87.34
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 86.02
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 84.75
2nps_C81 Vesicle transport through interaction with T- snar 84.29
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 84.01
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 80.2
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
Probab=99.89  E-value=1.8e-23  Score=159.73  Aligned_cols=76  Identities=24%  Similarity=0.425  Sum_probs=71.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155           70 ENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG  145 (286)
Q Consensus        70 ~~q~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk  145 (286)
                      ..++||+|++++++++++|++||+|||++|++++++|++||++|++|||||+|||++||.|+++|++|+++|++|+
T Consensus         7 ~~~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~   82 (83)
T 1l4a_C            7 PKTELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME   82 (83)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3478999999999999999999999999999999999999999999999999999999999999999999999997
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00