Citrus Sinensis ID: 023168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQVQK
cccEEEEEEEEcccEEEEEEccccccccccccEEEccccccccccEEccEEEEcccccccccccccEEEEcEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHHccc
cccEEEEEEEccccEEEEEEcccccccccccccEEEccccHHHccEEcEEEEEEcccccEEEcccEEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHHcHccc
mgqtlgciQVEQSKVVIREQFgkfdhvlepgcqclpwclgykvagrlSLRVQQLDvkcetktkdnvFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRAsvpklnldAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIvdiepdvhVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLafsenvpgttskdvMDMVLVTQYFDTMKeigassksssvfiphgpgavKDIATQIREGLLQANQVQK
mgqtlgciqveqSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVkcetktkdnvfvnVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFsenvpgttskdvmDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQVQK
MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNeinaaarlrlaanekaeaekiLQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQVQK
****LGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAAN******KILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEI*********FIP****AVKDIAT**************
***TLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSG*GI**QRQAIVDGLRDSVLA***********DVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIR***********
MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQVQK
*GQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQAN****
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MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAxxxxxxxxxxxxxxxxxxxxxYGYEIVQTLIVDIEPDVHVKRAMNEINAAARxxxxxxxxxxxxxxxxxxxxxGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQVQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q9FM19286 Hypersensitive-induced re yes no 0.986 0.986 0.854 1e-141
Q9CAR7286 Hypersensitive-induced re no no 0.986 0.986 0.861 1e-139
Q9SRH6285 Hypersensitive-induced re no no 0.986 0.989 0.762 1e-127
Q9FHM7292 Hypersensitive-induced re no no 0.975 0.955 0.592 1e-95
P16148184 Protein PPLZ12 OS=Lupinus N/A no 0.594 0.923 0.641 6e-61
O26788318 Uncharacterized protein M yes no 0.828 0.745 0.252 9e-10
P0AA56305 Protein QmcA OS=Shigella yes no 0.818 0.767 0.253 2e-09
P0AA53305 Protein QmcA OS=Escherich N/A no 0.818 0.767 0.253 2e-09
P0AA54305 Protein QmcA OS=Escherich yes no 0.818 0.767 0.253 2e-09
P0AA55305 Protein QmcA OS=Escherich N/A no 0.818 0.767 0.253 2e-09
>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1 Back     alignment and function desciption
 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/282 (85%), Positives = 261/282 (92%)

Query: 1   MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCET 60
           MG    C+QV+QS V I+E FGKF+ VLEPGC  LPWCLG +VAG LSLRVQQLDV+CET
Sbjct: 1   MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ 120
           KTKDNVFVNVVAS+QYRALA+KA DA+YKLSNTRGQIQAYVFDVIRASVPKL LD  FEQ
Sbjct: 61  KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query: 121 KNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEA 180
           KN+IAKAVEEELEKAMS YGYEIVQTLIVDIEPD HVKRAMNEINAAAR+RLAANEKAEA
Sbjct: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEA 180

Query: 181 EKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVT 240
           EKILQIKRAEGEAE+KYLSGLGIARQRQAIVDGLRDSVL F+ NVPGTT+KDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVT 240

Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQAN 282
           QYFDTMKEIGASSKSS+VFIPHGPGAV+D+A+QIR+GLLQ +
Sbjct: 241 QYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGS 282

Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1 Back     alignment and function description
>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1 Back     alignment and function description
>sp|O26788|Y692_METTH Uncharacterized protein MTH_692 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_692 PE=3 SV=1 Back     alignment and function description
>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1 Back     alignment and function description
>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA55|QMCA_ECO57 Protein QmcA OS=Escherichia coli O157:H7 GN=qmcA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
255558218285 Protein PPLZ12, putative [Ricinus commun 0.996 1.0 0.870 1e-146
217074028286 unknown [Medicago truncatula] 0.986 0.986 0.879 1e-145
449458019284 PREDICTED: hypersensitive-induced respon 0.993 1.0 0.869 1e-145
388518863286 unknown [Medicago truncatula] 0.986 0.986 0.879 1e-145
118489865285 unknown [Populus trichocarpa x Populus d 0.996 1.0 0.863 1e-143
225456672291 PREDICTED: hypersensitive-induced respon 0.986 0.969 0.865 1e-143
225456674286 PREDICTED: hypersensitive-induced respon 0.986 0.986 0.865 1e-143
297734025343 unnamed protein product [Vitis vinifera] 0.986 0.822 0.865 1e-143
224140937285 predicted protein [Populus trichocarpa] 0.996 1.0 0.859 1e-143
354683205286 hypersensitive induced reaction protein 0.986 0.986 0.861 1e-142
>gi|255558218|ref|XP_002520136.1| Protein PPLZ12, putative [Ricinus communis] gi|223540628|gb|EEF42191.1| Protein PPLZ12, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/285 (87%), Positives = 270/285 (94%)

Query: 1   MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCET 60
           MGQ LGC+QV+QS V I+E FGKFD VLEPGC CLPWCLG ++AG LSLRVQQLDV+CET
Sbjct: 1   MGQALGCVQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ 120
           KTKDNVFV VVAS+QYRALA+KA DAFYKLSNTR QIQAYVFDVIRASVPKL+LD+AFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAADAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSAFEQ 120

Query: 121 KNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEA 180
           KN+IAKAVE ELEKAMSHYG+EIVQTLIVDIEPD HVKRAMNEINAAAR+R+AA+EKAEA
Sbjct: 121 KNDIAKAVENELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAASEKAEA 180

Query: 181 EKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVT 240
           EKILQIKRAEG+AE+KYL+GLGIARQRQAIVDGLRDSVLAFSENVPGT+SKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240

Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQVQ 285
           QYFDTMKEIGASSKSSSVFIPHGPGAV+DIATQIR+GLLQAN  +
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVRDIATQIRDGLLQANSTR 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|217074028|gb|ACJ85374.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449458019|ref|XP_004146745.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449458021|ref|XP_004146746.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449520329|ref|XP_004167186.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449520331|ref|XP_004167187.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|34484310|gb|AAQ72788.1| hypersensitive-induced response protein [Cucumis sativus] Back     alignment and taxonomy information
>gi|388518863|gb|AFK47493.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|118489865|gb|ABK96731.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|225456672|ref|XP_002272267.1| PREDICTED: hypersensitive-induced response protein 1 isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456674|ref|XP_002272188.1| PREDICTED: hypersensitive-induced response protein 1 isoform 1 [Vitis vinifera] gi|225456676|ref|XP_002272225.1| PREDICTED: hypersensitive-induced response protein 1 isoform 2 [Vitis vinifera] gi|359491740|ref|XP_003634316.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734025|emb|CBI15272.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140937|ref|XP_002323833.1| predicted protein [Populus trichocarpa] gi|118486431|gb|ABK95055.1| unknown [Populus trichocarpa] gi|222866835|gb|EEF03966.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|354683205|gb|AER30501.1| hypersensitive induced reaction protein 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2196749286 AT1G69840 [Arabidopsis thalian 0.986 0.986 0.801 3.8e-117
TAIR|locus:2170698286 HIR1 "HYPERSENSITIVE-INDUCED R 0.986 0.986 0.783 2.2e-112
TAIR|locus:2100242285 HIR2 "hypersensitive induced r 0.986 0.989 0.698 3e-101
TAIR|locus:2153117292 AT5G51570 [Arabidopsis thalian 0.958 0.938 0.547 1.6e-77
UNIPROTKB|Q81JF5321 BAS1928 "SPFH domain/Band 7 fa 0.898 0.800 0.236 7.5e-13
TIGR_CMR|BA_2075321 BA_2075 "SPFH domain/Band 7 fa 0.898 0.800 0.236 7.5e-13
FB|FBgn0034936369 CG2970 [Drosophila melanogaste 0.958 0.742 0.218 1.3e-10
UNIPROTKB|Q5LQ79296 SPO2617 "SPFH domain/band 7 fa 0.520 0.503 0.287 2.1e-10
TIGR_CMR|SPO_2617296 SPO_2617 "SPFH domain/band 7 f 0.520 0.503 0.287 2.1e-10
UNIPROTKB|Q602F1309 MCA3112 "SPFH domain/Band 7 fa 0.832 0.770 0.242 1.1e-09
TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 226/282 (80%), Positives = 245/282 (86%)

Query:     1 MGQTLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCET 60
             MGQ LGCIQV+QS V I+E FGKFD VLEPGC CLPWCLG +VAG LSLRVQQLDV+CET
Sbjct:     1 MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ 120
             KTKDNVFV VVAS+QYRALA+ A DAFYKLSNTR QIQAYVFDVIRASVPKL+LD+ FEQ
Sbjct:    61 KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query:   121 KNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNXXXXXXXXXXXXXXXXXX 180
             KN+IAK VE ELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMN                  
Sbjct:   121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query:   181 XXXLQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVT 240
                LQIKRAEGEAE+KYLSG+GIARQRQAIVDGLR+SVLAFSE+VPGT+SKDVMDMVLVT
Sbjct:   181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query:   241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQAN 282
             QYFDT+KEIGASSKS+SVFIPHGPGAV+DIA+QIR+GLLQ N
Sbjct:   241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGN 282
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
FB|FBgn0034936 CG2970 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2617 SPO_2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q602F1 MCA3112 "SPFH domain/Band 7 family" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAR7HIR2_ARATHNo assigned EC number0.86170.98600.9860nono
Q9FM19HIR1_ARATHNo assigned EC number0.85460.98600.9860yesno
Q9SRH6HIR3_ARATHNo assigned EC number0.76240.98600.9894nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-138
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 3e-25
smart00244160 smart00244, PHB, prohibitin homologues 5e-25
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 2e-24
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 4e-22
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 2e-20
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 4e-11
TIGR01933261 TIGR01933, hflK, HflK protein 1e-06
cd03408207 cd03408, Band_7_5, A subgroup of the band 7 domain 9e-05
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 2e-04
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 6e-04
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 0.001
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  389 bits (1000), Expect = e-138
 Identities = 172/264 (65%), Positives = 199/264 (75%), Gaps = 2/264 (0%)

Query: 12  QSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVV 71
           QS+V I E+FGKF  V  PGC  +       VAGRLSLRVQQLDV+ ETKTKDNVFV VV
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 72  ASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEE 131
             +QYR   + A DAFYKL N   QIQ+YVFDV+RA +PKL LD  FEQK+EIAKAVEEE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 132 LEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEG 191
           L +AMS YG+EIV TLI DI+PD  VKRAMNEINAA R R+AA  KAEAEKI  IK AE 
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEA 179

Query: 192 EAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGA 251
           +AEAK L G+G A QRQAI DGLR+S+L+ ++ VPG T+KDVMD++LV QYFDT+K  G 
Sbjct: 180 DAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239

Query: 252 SSKSSSVFIPHGPGAVKDIATQIR 275
           SS S+ VF PHGPG  +DI  QIR
Sbjct: 240 SS-STVVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
KOG2620301 consensus Prohibitins and stomatins of the PID sup 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 100.0
KOG2621288 consensus Prohibitins and stomatins of the PID sup 100.0
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.98
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.97
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.95
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.92
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.89
KOG2962322 consensus Prohibitin-related membrane protease sub 99.85
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.81
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.81
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.78
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.75
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.67
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.55
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 99.1
PTZ00491850 major vault protein; Provisional 98.98
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 97.37
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 97.23
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.9
PRK11029334 FtsH protease regulator HflC; Provisional 96.88
PRK13665316 hypothetical protein; Provisional 96.77
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 96.68
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 96.64
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 96.58
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 96.49
KOG2620301 consensus Prohibitins and stomatins of the PID sup 96.13
PRK10930419 FtsH protease regulator HflK; Provisional 95.49
COG2268548 Uncharacterized protein conserved in bacteria [Fun 94.53
COG1580159 FliL Flagellar basal body-associated protein [Cell 94.13
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 93.61
PRK01558198 V-type ATP synthase subunit E; Provisional 90.17
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 89.28
PRK01005207 V-type ATP synthase subunit E; Provisional 87.65
PRK01558198 V-type ATP synthase subunit E; Provisional 86.84
PRK05697137 flagellar basal body-associated protein FliL-like 86.53
PRK07718142 fliL flagellar basal body-associated protein FliL; 85.97
PF0374899 FliL: Flagellar basal body-associated protein FliL 85.04
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 84.67
COG4864328 Uncharacterized protein conserved in bacteria [Fun 84.1
PRK02292188 V-type ATP synthase subunit E; Provisional 83.63
KOG2668428 consensus Flotillins [Intracellular trafficking, s 83.29
KOG3083271 consensus Prohibitin [Posttranslational modificati 83.09
PRK07021162 fliL flagellar basal body-associated protein FliL; 82.19
PRK06654181 fliL flagellar basal body-associated protein FliL; 82.12
KOG3090290 consensus Prohibitin-like protein [Posttranslation 82.08
PLN03086 567 PRLI-interacting factor K; Provisional 82.06
PRK01005207 V-type ATP synthase subunit E; Provisional 81.97
PRK12785166 fliL flagellar basal body-associated protein FliL; 81.75
PRK08404103 V-type ATP synthase subunit H; Validated 80.29
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
Probab=100.00  E-value=1.9e-54  Score=381.17  Aligned_cols=262  Identities=65%  Similarity=0.933  Sum_probs=248.5

Q ss_pred             CCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCCCcccCCCcEEEEeEEEEEEECcchHhhhhcccc
Q 023168           12 QSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLS   91 (286)
Q Consensus        12 ~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~   91 (286)
                      +|++|||++||+++++++|||||++|| ++++.+.+++|.+.++++.+++|+|++.|+|+++++|||.||.+.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~-i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEecc-ccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            589999999999999999999999999 5776557899999999998899999999999999999999977678899999


Q ss_pred             ChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHHHHH
Q 023168           92 NTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLR  171 (286)
Q Consensus        92 ~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~  171 (286)
                      ++...|.+.+++++|+++|++++++++++|++|+..+.+.+++.+++|||.|++|.|++++||+++.++|++++.|++++
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 023168          172 LAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGA  251 (286)
Q Consensus       172 ~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~  251 (286)
                      ++.+.+||+++...+.+|+|++++.+++|+|+|+++++.|+|+++++..+.+++++.++++++++++..+|+|+|+++++
T Consensus       160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~  239 (262)
T cd03407         160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR  239 (262)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998876677888999999999999999997


Q ss_pred             cCCCcEEEEcCCCCchhhHHHHHH
Q 023168          252 SSKSSSVFIPHGPGAVKDIATQIR  275 (286)
Q Consensus       252 ~~~~~~i~lp~~~~~~~~~~~~~~  275 (286)
                      +++ +++++|.+++++.+++..|+
T Consensus       240 ~~~-kviv~p~~~~~~~~~~~~~~  262 (262)
T cd03407         240 SSS-TVVFRPHGPGGAQDIYAQIR  262 (262)
T ss_pred             CCC-CEEEecCCCccHHHHHHhcC
Confidence            655 89999999999999888763

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK02292 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK08404 V-type ATP synthase subunit H; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 5e-13
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 2e-06
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 2e-06
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 64.1 bits (156), Expect = 5e-13
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 46  RLSLRVQQLDVKCET-KTKDNVFVNVVASVQYRALADK---AYDAFYKLSNTRGQIQAYV 101
           R+SL +  L  +CE  +T + V + V    Q + + +K   A      L      I+  V
Sbjct: 9   RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVV 68

Query: 102 FDVI----RASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHV 157
              +    R+ +  L ++  ++ +++ AK V E     +   G EI+   I D+   V  
Sbjct: 69  LQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDY 128

Query: 158 KRAMNEINAAAR 169
             ++ +   +  
Sbjct: 129 LSSLGKTQTSGP 140
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.97
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.95
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.87
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.86
2zuo_A861 MVP, major vault protein; repeat domains, protein- 99.04
3v6i_B105 V-type ATP synthase, subunit (VAPC-therm); periphe 87.84
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 84.8
2zuo_A861 MVP, major vault protein; repeat domains, protein- 83.6
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.97  E-value=6.8e-31  Score=219.40  Aligned_cols=177  Identities=25%  Similarity=0.271  Sum_probs=141.4

Q ss_pred             cceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHH
Q 023168           40 GYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAF  118 (286)
Q Consensus        40 ~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~  118 (286)
                      ++++ +++|+|.++++++. .++|+|+++|+|+++++|||.|  |.++++.+.|+...+.+++++.+|+++|++++++++
T Consensus         3 i~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell   79 (188)
T 3bk6_A            3 FEKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELL   79 (188)
T ss_dssp             EEEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eEEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence            4777 48999999999987 8999999999999999999999  567788999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHH
Q 023168          119 EQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYL  198 (286)
Q Consensus       119 ~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~  198 (286)
                      ++|++|+..|++.|++.+++|||+|.+|.|++|+||+++.++|++++.|++++++.+.+|||++++           .+.
T Consensus        80 ~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a-----------~~~  148 (188)
T 3bk6_A           80 SERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA-----------AEK  148 (188)
T ss_dssp             HCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHH
Confidence            999999999999999999999999999999999999999999999988888777666555555443           333


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhccCCC
Q 023168          199 SGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKS  255 (286)
Q Consensus       199 ~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~~~~~  255 (286)
                      .|+|               .+.+..      +    +.++.+||||++.+++.++++
T Consensus       149 ~a~a---------------~~~~~~------~----~~~l~lr~le~~~~ia~~~~~  180 (188)
T 3bk6_A          149 LREA---------------AEIISE------H----PMALQLRTLQTISDVAGDKSN  180 (188)
T ss_dssp             HHHH---------------HHHHHH------C----TTHHHHHHTTC----------
T ss_pred             HHHH---------------HHHHHh------C----HHHHHHHHHHHHHHHhcCCCC
Confidence            3222               112221      1    245778999999999875443
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 3e-20
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (203), Expect = 3e-20
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 46  RLSLRVQQLDVKCET-KTKDNVFVNVVASVQYRALADKAYDAF-------YKLSNTRGQI 97
           R+SL +  L  +CE  +T + V + V    Q + + +K   A          + + +  +
Sbjct: 9   RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVV 68

Query: 98  QAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHV 157
              +   +R+ +  L ++  ++ +++ AK V E     +   G EI+   I D+   V  
Sbjct: 69  LQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDY 128

Query: 158 KRAMNEINAAAR 169
             ++ +   +  
Sbjct: 129 LSSLGKTQTSGP 140

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.84
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=5.5e-22  Score=156.20  Aligned_cols=123  Identities=20%  Similarity=0.372  Sum_probs=109.8

Q ss_pred             EeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHh-h-h---h--ccccChHHHHHHHHHHHHHhHccCCCHHH
Q 023168           45 GRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAY-D-A---F--YKLSNTRGQIQAYVFDVIRASVPKLNLDA  116 (286)
Q Consensus        45 ~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~-~-~---~--~~~~~~~~~l~~~~~~~lr~vi~~~~~~e  116 (286)
                      +++|+|.++++++. +++|+||++|+|+++++|||.||... . +   +  +...+++..+.+.+++++|+++|++++++
T Consensus         8 ~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~e   87 (143)
T d1wina_           8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQ   87 (143)
T ss_dssp             CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            47999999999998 78999999999999999999985311 1 1   0  24457888999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHH
Q 023168          117 AFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAA  167 (286)
Q Consensus       117 l~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~A  167 (286)
                      ++++|++|...+++.+++.+.+|||+|.+|.|+||++|++|.++|.++++|
T Consensus        88 l~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          88 IYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999876554