Citrus Sinensis ID: 023180

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
cccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHccccccccccccccEEEEccccEEEccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEEEEcccEEEEcccccccccccccccccccccccEEEEEEEcccccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHcccccEEEccccccEEEEccEEEccccEccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccEEEEHHEEHcccccccccEccccccccccccccHHHccccEEccccccEEEEEEcccccccccccccccccEEEccEEEEcEEEEEcccccc
mkgkakrsstklglptaLLLCSFFFLAgfygstflsrdvpsirpklrTLEVVEKenesglphgetgdasiqsipfqvlswrpralyfpnfasaEQCQSIIATAKKrlkpsqlalrqgetvestkgtrtssgtfisasedkTGILELIEHKIARatmlpqthgeAFNVLRYEIgqkydshydafnpaeygpqmSQRLASFLLYLSDveeggetmfpfengifldsgydykkciglkvkprrgdgllfyslfpngtidrtslhgscpvikgeKWVATKWIRDQEQHED
mkgkakrsstklglpTALLLCSFFFLAGFYGSTflsrdvpsirpKLRTLEVVEKENesglphgetgdasiqSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKrlkpsqlalrqgetvestkgtrtssgtfisasedktGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNgtidrtslhgscpvikgekwvATKWIRDQEQHED
MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
***********LGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTL********************IQSIPFQVLSWRPRALYFPNFASAEQCQSIIATA*************************************TGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR*******
*************LPTALLLCSFFFLAGFYGSTFLS***********************LPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKK********************TRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWI*DQE****
***********LGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKR***********************SGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
*********TKLGLPTALLLCSFFFLAGFYGSTFLSR********LRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQ*****
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVEKENESGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
P16924516 Prolyl 4-hydroxylase subu yes no 0.629 0.348 0.301 3e-20
P54001534 Prolyl 4-hydroxylase subu yes no 0.629 0.337 0.297 4e-19
Q60715534 Prolyl 4-hydroxylase subu yes no 0.632 0.338 0.284 7e-19
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.632 0.338 0.279 4e-18
P13674534 Prolyl 4-hydroxylase subu yes no 0.632 0.338 0.279 4e-18
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.632 0.338 0.279 5e-18
Q75UG4544 Prolyl 4-hydroxylase subu no no 0.678 0.356 0.296 4e-17
Q7Z4N8544 Prolyl 4-hydroxylase subu no no 0.678 0.356 0.310 4e-17
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.629 0.337 0.284 8e-17
Q6W3F0542 Prolyl 4-hydroxylase subu no no 0.657 0.346 0.309 9e-17
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function desciption
 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 32/212 (15%)

Query: 81  RPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVE-STKGTRTSSGTFISASED 139
           +PR + F +  S E+ +++   AK RL  S+  +   ET + +T   R S   ++S  E 
Sbjct: 316 KPRIVRFLDIISDEEIETVKELAKPRL--SRATVHDPETGKLTTAHYRVSKSAWLSGYE- 372

Query: 140 KTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYD--------AFNPAEYGPQ 191
            + ++  I  +I   T L  +  E   V  Y +G +Y+ H+D        AF     G  
Sbjct: 373 -SPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTG-- 429

Query: 192 MSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFP 251
              R+A++L Y+SDV  GG T+FP                +G  V P++G  + +Y+LFP
Sbjct: 430 --NRIATWLFYMSDVSAGGATVFP---------------EVGASVWPKKGTAVFWYNLFP 472

Query: 252 NGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ 283
           +G  D ++ H +CPV+ G KWV+ KW+ ++ Q
Sbjct: 473 SGEGDYSTRHAACPVLVGNKWVSNKWLHERGQ 504
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
297798522288 oxidoreductase [Arabidopsis lyrata subsp 0.961 0.954 0.750 1e-125
255573113286 prolyl 4-hydroxylase alpha subunit, puta 0.954 0.954 0.754 1e-125
385137888288 oxygenase protein, partial [Arabidopsis 0.961 0.954 0.758 1e-124
18418321288 oxidoreductase, 2OG-Fe(II) oxygenase fam 0.961 0.954 0.750 1e-124
224103711294 predicted protein [Populus trichocarpa] 0.979 0.952 0.723 1e-120
225428938284 PREDICTED: prolyl 4-hydroxylase subunit 0.989 0.996 0.737 1e-120
449448264294 PREDICTED: prolyl 4-hydroxylase subunit 0.996 0.969 0.707 1e-116
449511009294 PREDICTED: LOW QUALITY PROTEIN: prolyl 4 0.996 0.969 0.704 1e-116
147823227276 hypothetical protein VITISV_009065 [Viti 0.961 0.996 0.727 1e-116
255584898290 prolyl 4-hydroxylase alpha subunit, puta 0.993 0.979 0.694 1e-114
>gi|297798522|ref|XP_002867145.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312981|gb|EFH43404.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/277 (75%), Positives = 242/277 (87%), Gaps = 2/277 (0%)

Query: 11  KLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVE--KENESGLPHGETGDA 68
           KLGL T ++ CS  FL GFYGST LS++VP ++P+LR LE+VE  +E+   +PHG TG+ 
Sbjct: 12  KLGLATVIVFCSLCFLVGFYGSTLLSQNVPRVKPRLRMLEMVENGEEDTGSMPHGVTGEE 71

Query: 69  SIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRT 128
           S+ SIPFQVLSWRPRA+YFPNFA+AEQCQ+II  AK  LKPS LALR+GET E+TKGTRT
Sbjct: 72  SVGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKGETAENTKGTRT 131

Query: 129 SSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEY 188
           SSGTFISASED TG L+ +E KIARATM+P++HGE+FN+LRYE+GQKYDSHYD FNP EY
Sbjct: 132 SSGTFISASEDSTGALDFVERKIARATMIPRSHGESFNILRYELGQKYDSHYDVFNPTEY 191

Query: 189 GPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYS 248
           GPQ SQR+ASFLLYLSDVEEGGETMFPFENG  + +GYDYK+CIGLKVKPR+GDGLLFYS
Sbjct: 192 GPQSSQRIASFLLYLSDVEEGGETMFPFENGSNMGTGYDYKQCIGLKVKPRKGDGLLFYS 251

Query: 249 LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHE 285
           +FPNGTID+TSLHGSCPV KGEKWVATKWIRDQ+Q E
Sbjct: 252 VFPNGTIDQTSLHGSCPVTKGEKWVATKWIRDQDQEE 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573113|ref|XP_002527486.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223533126|gb|EEF34884.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|385137888|gb|AFI41205.1| oxygenase protein, partial [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418321|ref|NP_567941.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gi|17381226|gb|AAL36425.1| unknown protein [Arabidopsis thaliana] gi|20465827|gb|AAM20018.1| unknown protein [Arabidopsis thaliana] gi|21592377|gb|AAM64328.1| putative dioxygenase [Arabidopsis thaliana] gi|332660892|gb|AEE86292.1| oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224103711|ref|XP_002313164.1| predicted protein [Populus trichocarpa] gi|222849572|gb|EEE87119.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428938|ref|XP_002262952.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296083079|emb|CBI22483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448264|ref|XP_004141886.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511009|ref|XP_004163837.1| PREDICTED: LOW QUALITY PROTEIN: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147823227|emb|CAN70872.1| hypothetical protein VITISV_009065 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584898|ref|XP_002533164.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223527036|gb|EEF29223.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.996 0.989 0.732 5e-115
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.916 0.956 0.566 6.2e-78
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.695 0.693 0.480 9.1e-45
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.706 0.698 0.464 5e-44
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.951 0.937 0.374 4.5e-43
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.688 0.684 0.461 1.2e-40
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.940 0.924 0.359 1.1e-39
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.688 0.661 0.447 3.4e-38
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.688 0.658 0.437 1.3e-36
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.727 0.734 0.394 2.8e-34
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
 Identities = 211/288 (73%), Positives = 245/288 (85%)

Query:     1 MKGKAKR-SSTKLGLPTALLLCSFFFLAGFYGSTFLSRDVPSIRPKLRTLEVVE--KENE 57
             MK + K     KLGL T ++ CS  FL GFYGST LS++VP ++P+LR L++VE  +E  
Sbjct:     1 MKSRLKSYRRKKLGLATVIVFCSLCFLFGFYGSTLLSQNVPRVKPRLRMLDMVENGEEEA 60

Query:    58 SGLPHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQG 117
             S +PHG TG+ SI SIPFQVLSWRPRA+YFPNFA+AEQCQ+II  AK  LKPS LALR+G
Sbjct:    61 SSMPHGVTGEESIGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKG 120

Query:   118 ETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYD 177
             ET E+TKGTRTSSGTFISASE+ TG L+ +E KIARATM+P++HGE+FN+LRYE+GQKYD
Sbjct:   121 ETAENTKGTRTSSGTFISASEESTGALDFVERKIARATMIPRSHGESFNILRYELGQKYD 180

Query:   178 SHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237
             SHYD FNP EYGPQ SQR+ASFLLYLSDVEEGGETMFPFENG  +  GYDYK+CIGLKVK
Sbjct:   181 SHYDVFNPTEYGPQSSQRIASFLLYLSDVEEGGETMFPFENGSNMGIGYDYKQCIGLKVK 240

Query:   238 PRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHE 285
             PR+GDGLLFYS+FPNGTID+TSLHGSCPV KGEKWVATKWIRDQ+Q E
Sbjct:   241 PRKGDGLLFYSVFPNGTIDQTSLHGSCPVTKGEKWVATKWIRDQDQEE 288
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 1e-50
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 1e-40
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 2e-07
PRK05467226 PRK05467, PRK05467, Fe(II)-dependent oxygenase sup 2e-06
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-06
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  168 bits (427), Expect = 1e-50
 Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 17/230 (7%)

Query: 63  GETGDASIQSI----PF-----QVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLA 113
           GE GD  + ++    PF     + +SW+PR   +  F S  +C  ++  AKK+++ S +A
Sbjct: 26  GEAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVA 85

Query: 114 LRQ-GETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEI 172
             + G++V S    RTSSG F+   +D   ++  IE +IA  T LP+ + E   +LRYE 
Sbjct: 86  DNKSGKSVMSE--VRTSSGMFLDKRQDP--VVSRIEERIAAWTFLPEENAENIQILRYEH 141

Query: 173 GQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYD-YKKC 231
           GQKY+ H+D F+          R A+ L+YLS V++GGET+FP   G       D + +C
Sbjct: 142 GQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSEC 201

Query: 232 I--GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279
              GL VKP +GD +LF+SL  +G  D  SLHGSCPVI+GEKW A KWI 
Sbjct: 202 AHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIH 251

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|235483 PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.96
PHA02813 354 hypothetical protein; Provisional 99.72
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.71
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.64
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.55
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.92
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.62
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.54
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.46
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.08
PHA02866 333 Hypothetical protein; Provisional 97.9
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.88
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.48
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.44
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 97.43
TIGR02466201 conserved hypothetical protein. This family consis 97.2
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.13
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.04
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 96.99
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.06
PHA02923 315 hypothetical protein; Provisional 95.7
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 95.52
KOG3200224 consensus Uncharacterized conserved protein [Funct 92.65
COG3826236 Uncharacterized protein conserved in bacteria [Fun 89.55
PLN02485329 oxidoreductase 87.2
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 87.1
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.68
COG4340226 Uncharacterized protein conserved in bacteria [Fun 83.16
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.07
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 82.86
PLN02904357 oxidoreductase 81.8
PHA02985 271 hypothetical protein; Provisional 81.21
PLN02216357 protein SRG1 80.61
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 80.3
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-56  Score=411.51  Aligned_cols=220  Identities=38%  Similarity=0.700  Sum_probs=188.2

Q ss_pred             CCCCCCCCcccccccEEeecCCCEEEecCCCCHHHHHHHHHHHhcCCCcceeeecC-CceeeeecceeeccceeecCCCC
Q 023180           61 PHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQ-GETVESTKGTRTSSGTFISASED  139 (286)
Q Consensus        61 ~~~~~~~~~~~~~p~~~ls~~P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~~~-G~~~~~~~~~RtS~~~~l~~~ed  139 (286)
                      ..+..+.+.+....+++|||+|+|++|+||||++||++||+++++++++|+++... |++  ..+.+|||+++|+...++
T Consensus        33 ~~~~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~--~~s~~RTS~~~~l~~~~d  110 (310)
T PLN00052         33 VGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKS--VMSEVRTSSGMFLDKRQD  110 (310)
T ss_pred             cccccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcc--ccCCCEEecceeecCCCC
Confidence            34455556666666789999999999999999999999999999999999987643 332  357799999999987665


Q ss_pred             hHHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCC
Q 023180          140 KTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENG  219 (286)
Q Consensus       140 ~~~v~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~  219 (286)
                        +++++|++||++++++|..+.|.+||+||++||+|++|+|++........+++|++|+|+||||+++||||+||....
T Consensus       111 --pvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~  188 (310)
T PLN00052        111 --PVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG  188 (310)
T ss_pred             --HHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc
Confidence              599999999999999999999999999999999999999998754333357899999999999999999999998632


Q ss_pred             cc-cCCCCCccccc--cEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEecccccccc
Q 023180          220 IF-LDSGYDYKKCI--GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQH  284 (286)
Q Consensus       220 ~~-~~~~~~~~~~~--~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~q~  284 (286)
                      .. ...+..+.+|.  +++|+|++|+||+|+|+++||++|++++|+||||++|+||++|+|||.+...
T Consensus       189 ~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        189 WENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             ccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence            11 11234456664  8999999999999999999999999999999999999999999999998654

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PHA02985 hypothetical protein; Provisional Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 8e-44
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 1e-43
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-43
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 9e-42
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 7e-30
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (439), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 7/205 (3%)
Query: 78  LSWRPRALYFPNFASAEQCQSIIATAK-KRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
           LSW PRA    NF S E+C  I+  A+ K +K S +    G++V+S    RTS+GT+ + 
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 82
Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQMS-Q 194
            ED   ++  IE ++A+ TM+P  + E   VL Y  GQKY+ HYD F +P   GP+   Q
Sbjct: 83  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 195 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 254
           R+ + L+YL+ VEEGGET+ P         G+      GL VKP +GD L+FYSL P+G+
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 200
Query: 255 IDRTSLHGSCPVIKGEKWVATKWIR 279
            D  SLHGSCP +KG+KW ATKWI 
Sbjct: 201 NDPASLHGSCPTLKGDKWSATKWIH 225
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 8e-81
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 9e-75
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  242 bits (619), Expect = 8e-81
 Identities = 87/208 (41%), Positives = 121/208 (58%), Gaps = 5/208 (2%)

Query: 77  VLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISA 136
            LSW PRA    NF S E+C  I+  A+ ++  S +   +      ++  RTS+GT+ + 
Sbjct: 15  HLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE-IRTSTGTWFAK 73

Query: 137 SEDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF-NPAEYGPQ-MSQ 194
            ED   ++  IE ++A+ TM+P  + E   VL Y  GQKY+ HYD F +P   GP+   Q
Sbjct: 74  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131

Query: 195 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGT 254
           R+ + L+YL+ VEEGGET+ P         G+      GL VKP +GD L+FYSL P+G+
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 191

Query: 255 IDRTSLHGSCPVIKGEKWVATKWIRDQE 282
            D  SLHGSCP +KG+KW ATKWI    
Sbjct: 192 NDPASLHGSCPTLKGDKWSATKWIHVAP 219
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.91
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.04
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.62
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.69
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.63
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.55
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 96.84
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 96.68
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 96.6
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 96.51
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.39
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 95.97
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 95.77
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 95.64
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 81.96
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.3e-50  Score=359.06  Aligned_cols=203  Identities=42%  Similarity=0.784  Sum_probs=177.1

Q ss_pred             cEEeecCCCEEEecCCCCHHHHHHHHHHHhcCCCcceeeecC-CceeeeecceeeccceeecCCCChHHHHHHHHHHHHH
Q 023180           75 FQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQ-GETVESTKGTRTSSGTFISASEDKTGILELIEHKIAR  153 (286)
Q Consensus        75 ~~~ls~~P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~~~-G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~  153 (286)
                      +++||++|+|++|+||||++||++||+++++++++|++.... |.  ...+.+|+|+++|+...++  +++++|++||.+
T Consensus        13 ~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~--~~~~~~R~s~~~~l~~~~~--~~~~~i~~ri~~   88 (224)
T 2jig_A           13 VVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGK--SVDSEIRTSTGTWFAKGED--SVISKIEKRVAQ   88 (224)
T ss_dssp             EEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTE--EEECSSBCSEEEECCTTCS--HHHHHHHHHHHH
T ss_pred             eEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCc--ccccCCEEEeeeEecCCCC--HHHHHHHHHHHH
Confidence            589999999999999999999999999999999999987643 33  2457899999999987554  589999999999


Q ss_pred             hhCCCCCCCCcceEEecCCCCccccCccCCCCCCCC--CCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCcccc
Q 023180          154 ATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG--PQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKC  231 (286)
Q Consensus       154 ~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~  231 (286)
                      ++++|...+|.+||+||++||+|++|+|++......  ..+++|++|+++||||+++||||+||.....  ..++.+.+|
T Consensus        89 ~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~--~~~~~~~~c  166 (224)
T 2jig_A           89 VTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQK--VTGDGWSEC  166 (224)
T ss_dssp             HHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSC--CCSTTSCTT
T ss_pred             HhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcccc--ccccccccc
Confidence            999999999999999999999999999998653211  2457999999999999999999999976422  234455666


Q ss_pred             --ccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEeccccccc
Q 023180          232 --IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQ  283 (286)
Q Consensus       232 --~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~q  283 (286)
                        .+++|+|++|+||+|+|+++||++|++++|+||||++|+||++++||+.++.
T Consensus       167 ~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~  220 (224)
T 2jig_A          167 AKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPI  220 (224)
T ss_dssp             GGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCC
T ss_pred             ccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCc
Confidence              4799999999999999999999999999999999999999999999998753
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 97.8
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.71
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.99
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.39
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 84.86
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00022  Score=61.42  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             cccCccCCCCCCCCCCCCceEEEEEEeccCCC-CCcceec-ccCCCccc-C------C-C--------CCc-cccccEEE
Q 023180          176 YDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE-EGGETMF-PFENGIFL-D------S-G--------YDY-KKCIGLKV  236 (286)
Q Consensus       176 y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~-eGGeT~F-p~~~~~~~-~------~-~--------~~~-~~~~~l~V  236 (286)
                      ..+|.|......   ......+|+.|+|+|+. +.|.+.+ |....... .      . .        .+. .....+.+
T Consensus       130 ~~wHqD~~~~~~---~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (296)
T d2a1xa1         130 HPLHQDLHYFPF---RPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL  206 (296)
T ss_dssp             -CCBCGGGGCCE---ECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEE
T ss_pred             CCcccCcccccc---CCccccceeeEeeeeccccccccceecccccccccccccccccCCcccccccccchhhccceEEe
Confidence            458999753211   23467899999999984 5566766 54321110 0      0 0        001 11234667


Q ss_pred             ecCcccEEEeeecCCCCCCCCCCcccccccc-cceEEEEEecc
Q 023180          237 KPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI-KGEKWVATKWI  278 (286)
Q Consensus       237 ~P~~G~allF~n~~~~g~~D~~~lH~g~PV~-~G~K~i~~~Wi  278 (286)
                      .-++|++|+|.         ..++|++.|-. ...++++..-+
T Consensus       207 ~~k~Gdvli~~---------~~l~Hgs~~N~S~~~R~~l~~~y  240 (296)
T d2a1xa1         207 VMEKGDTVFFH---------PLLIHGSGQNKTQGFRKAISCHF  240 (296)
T ss_dssp             CBCTTCEEEEC---------TTCCEEECCBCSSSCEEEEEEEE
T ss_pred             eecCCcEEEEC---------CCeeecCCCCCCcCceEEEEEEE
Confidence            78999999994         59999999966 45788776544
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure