Citrus Sinensis ID: 023184

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
ccccccccccccEEEcccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHccccccHHHHcccHHHcccccc
cccccccccccccccccHHcccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHEEEEEEEEEEEEEEEHcccccHccHcccccHHHHHHHHHHHHHHcccccccccccccccccHEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccc
madnsgtgsngvcvtfkdcedaiqncpssaapppppscgtkdsvyFSVPFMQKLMAEILGTYFMIFAGCASVVVNlnnekivslpgisIVWGLVVMVLVYSLGhisgahfnpsvtiahatckrfpwkqvppyilcQVLGSTLAAGTLRLLFQEKQdqfagtlpagsNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAgympitgasmnparslgpaivssqykgLWIYivapplgatagAWVYNMVRYTDKPLREITKSASFLKGAGRS
madnsgtgsngVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKplreitksasflkgagrs
MADNSGTGSNGVCVTFKDCEDAIQNCpssaapppppsCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
******************************************SVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLR***************
******************************************SVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVR**********************
*********NGVCVTFKDCEDAIQNCP***********GTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
***************************SSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
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MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi yes no 0.958 0.931 0.679 1e-104
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.968 0.935 0.645 1e-101
P08995271 Nodulin-26 OS=Glycine max no no 0.937 0.988 0.618 2e-96
Q40746284 Aquaporin NIP1-1 OS=Oryza yes no 0.832 0.838 0.679 2e-93
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.828 0.840 0.648 2e-87
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 0.902 0.902 0.600 1e-85
Q0JPT5303 Aquaporin NIP1-2 OS=Oryza no no 0.835 0.788 0.603 3e-84
Q9FIZ9283 Putative aquaporin NIP4-1 no no 0.870 0.879 0.562 9e-80
Q8W036283 Probable aquaporin NIP4-2 no no 0.877 0.886 0.568 2e-79
P49173270 Probable aquaporin NIP-ty N/A no 0.797 0.844 0.616 3e-78
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function desciption
 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/293 (67%), Positives = 230/293 (78%), Gaps = 19/293 (6%)

Query: 1   MADNSGTGSNG----VCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVY-FSVPFMQKLM 55
           MA+ SG G +     V V  K+ ED  Q    +   P       +DS+   SVPF+QKLM
Sbjct: 1   MAEISGNGGDARDGAVVVNLKE-EDEQQQQQQAIHKP----LKKQDSLLSISVPFLQKLM 55

Query: 56  AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 115
           AE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLVYSLGHISGAHFNP+VT
Sbjct: 56  AEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVT 115

Query: 116 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNI 168
           IA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F GTLP+GSN+
Sbjct: 116 IAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNL 175

Query: 169 QAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPAR 228
           Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+ AG  P++GASMNP R
Sbjct: 176 QSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVIIAG--PVSGASMNPGR 233

Query: 229 SLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 281
           SLGPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLREITKS SFLK
Sbjct: 234 SLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREITKSGSFLK 286
Water channel probably required to promote glycerol permeability and water transport across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q0JPT5|NIP12_ORYSJ Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
255562536271 Aquaporin NIP1.1, putative [Ricinus comm 0.944 0.996 0.749 1e-119
224116768242 predicted protein [Populus trichocarpa] 0.835 0.987 0.818 1e-113
359483792282 PREDICTED: aquaporin NIP1-2 [Vitis vinif 0.947 0.960 0.714 1e-111
388506778272 unknown [Lotus japonicus] 0.937 0.985 0.712 1e-109
307136182276 aquaporin [Cucumis melo subsp. melo] 0.944 0.978 0.693 1e-107
449508562276 PREDICTED: aquaporin NIP1-2-like [Cucumi 0.944 0.978 0.693 1e-107
363806664273 uncharacterized protein LOC100812577 [Gl 0.930 0.974 0.693 1e-107
224079011226 aquaporin, MIP family, NIP subfamily [Po 0.790 1.0 0.824 1e-107
301072335271 nodulin 26-like intrinsic protein [Fraga 0.947 1.0 0.685 1e-106
357519149269 Aquaporin NIP1-2 [Medicago truncatula] g 0.926 0.985 0.673 1e-106
>gi|255562536|ref|XP_002522274.1| Aquaporin NIP1.1, putative [Ricinus communis] gi|223538527|gb|EEF40132.1| Aquaporin NIP1.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/287 (74%), Positives = 245/287 (85%), Gaps = 17/287 (5%)

Query: 1   MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVY-FSVPFMQKLMAEIL 59
           MA+ SG G++GV +  KD               PPPS  +KDSV  FSVPFMQKL+AE++
Sbjct: 1   MAEISGNGNHGVVLDIKDVN-------------PPPSA-SKDSVLSFSVPFMQKLIAEMV 46

Query: 60  GTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHA 119
           GTYF+IFAGC SV VNLN +K+V+LPGISIVWGL VMVLVYS+GHISGAHFNP+VT+A A
Sbjct: 47  GTYFLIFAGCTSVAVNLNFDKVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTLAFA 106

Query: 120 TCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITF 179
           TCKRFPWKQVP YI CQV+GSTLAAGT+RL+F  KQD F GT+PAGS++Q+FV+EFIITF
Sbjct: 107 TCKRFPWKQVPAYIACQVIGSTLAAGTIRLIFTGKQDHFTGTMPAGSDMQSFVVEFIITF 166

Query: 180 YLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQY 239
           YLMF+ISGVATDNRAIGELAGLAVG+TVLLNVMFAG  PI+GASMNPARSLGPAIVS +Y
Sbjct: 167 YLMFIISGVATDNRAIGELAGLAVGATVLLNVMFAG--PISGASMNPARSLGPAIVSHKY 224

Query: 240 KGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS 286
           KGLWIYIV+P LGA AGAWVYNM+RYTDKPLREITKSASFLK  GR+
Sbjct: 225 KGLWIYIVSPTLGAQAGAWVYNMIRYTDKPLREITKSASFLKSTGRA 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116768|ref|XP_002317387.1| predicted protein [Populus trichocarpa] gi|222860452|gb|EEE97999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483792|ref|XP_002264957.2| PREDICTED: aquaporin NIP1-2 [Vitis vinifera] gi|297740553|emb|CBI30735.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506778|gb|AFK41455.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|307136182|gb|ADN34021.1| aquaporin [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449508562|ref|XP_004163347.1| PREDICTED: aquaporin NIP1-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363806664|ref|NP_001242005.1| uncharacterized protein LOC100812577 [Glycine max] gi|255646225|gb|ACU23597.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224079011|ref|XP_002305717.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222848681|gb|EEE86228.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|301072335|gb|ADK56129.1| nodulin 26-like intrinsic protein [Fragaria chiloensis] Back     alignment and taxonomy information
>gi|357519149|ref|XP_003629863.1| Aquaporin NIP1-2 [Medicago truncatula] gi|355523885|gb|AET04339.1| Aquaporin NIP1-2 [Medicago truncatula] gi|388495656|gb|AFK35894.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.835 0.812 0.755 8.7e-95
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.975 0.942 0.632 1.7e-91
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.814 0.823 0.608 1.5e-74
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.891 0.901 0.570 1.9e-74
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.793 0.702 0.576 3.8e-69
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.800 0.795 0.552 3.2e-65
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.765 0.718 0.495 8e-53
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.758 0.713 0.5 1.2e-51
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.818 0.785 0.421 2.5e-49
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.783 0.814 0.401 1.3e-38
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 188/249 (75%), Positives = 216/249 (86%)

Query:    41 KDSVY-FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLV 99
             +DS+   SVPF+QKLMAE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLV
Sbjct:    40 QDSLLSISVPFLQKLMAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLV 99

Query:   100 YSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF---QE--- 153
             YSLGHISGAHFNP+VTIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF   Q+   
Sbjct:   100 YSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCS 159

Query:   154 -KQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVM 212
              K D F GTLP+GSN+Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+
Sbjct:   160 GKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVI 219

Query:   213 FAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLRE 272
              AG  P++GASMNP RSLGPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLRE
Sbjct:   220 IAG--PVSGASMNPGRSLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLRE 277

Query:   273 ITKSASFLK 281
             ITKS SFLK
Sbjct:   278 ITKSGSFLK 286
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA
GO:0015700 "arsenite transport" evidence=IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP
GO:0006857 "oligopeptide transport" evidence=RCA
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40746NIP11_ORYSJNo assigned EC number0.67910.83210.8380yesno
Q8LFP7NIP12_ARATHNo assigned EC number0.67910.95800.9319yesno
Q9ATN4NIP11_MAIZENo assigned EC number0.64850.82860.8404N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-134
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-109
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-74
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-64
pfam00230218 pfam00230, MIP, Major intrinsic protein 6e-64
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 7e-61
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-56
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-53
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 5e-43
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 3e-32
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-25
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 4e-16
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 7e-16
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 9e-04
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information 
 Score =  382 bits (982), Expect = e-134
 Identities = 190/293 (64%), Positives = 222/293 (75%), Gaps = 16/293 (5%)

Query: 1   MADNSGTG-----SNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLM 55
           MAD SG G        V V  K+  +  Q   +   P P     +  SV  SVPF+QKL+
Sbjct: 1   MADISGNGYGNAREGVVMVNLKEEVEHQQEMEAIHNPKPLKKQDSLLSV--SVPFLQKLI 58

Query: 56  AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 115
           AE+LGTYF++F GCASVVVN+ N+ +V+LPGI+IVWGL +MVL+YSLGHISGAH NP+VT
Sbjct: 59  AEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVT 118

Query: 116 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNI 168
           IA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F G+ P GS++
Sbjct: 119 IAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDL 178

Query: 169 QAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGASMNPAR 228
           QAFVMEFI+TFYLMF+ISGVATDNRAIGELAGLA+GSTVLLNV+ A   P++ ASMNP R
Sbjct: 179 QAFVMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAA--PVSSASMNPGR 236

Query: 229 SLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 281
           SLGPA+V   YKG+WIYIVAP LGA AGAWVYN VRYTDKPLREITKS SFLK
Sbjct: 237 SLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLK 289

Length = 296
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.61
PLN00183274 putative aquaporin NIP7; Provisional 99.6
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.58
PLN00026298 aquaporin NIP; Provisional 99.58
PLN00184 296 aquaporin NIP1; Provisional 99.56
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.5
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.49
PLN00166 250 aquaporin TIP2; Provisional 99.46
PLN00167 256 aquaporin TIP5; Provisional 99.44
PLN00027 252 aquaporin TIP; Provisional 99.4
PTZ00016 294 aquaglyceroporin; Provisional 99.39
PRK05420231 aquaporin Z; Provisional 99.33
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.28
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.25
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.15
COG2116265 FocA Formate/nitrite family of transporters [Inorg 93.17
PRK10805285 formate transporter; Provisional 93.06
PRK11562268 nitrite transporter NirC; Provisional 89.53
PRK09713282 focB putative formate transporter; Provisional 80.02
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.1e-55  Score=396.66  Aligned_cols=239  Identities=73%  Similarity=1.220  Sum_probs=211.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccCchhHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHHhcCCC
Q 023184           46 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP  125 (286)
Q Consensus        46 ~~~~l~~~~i~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~  125 (286)
                      .+.+++|++++||+|||+|+|++|+++..+...+....++.++++||+++++.+++++++||||+|||||+++++.|+++
T Consensus        49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~  128 (296)
T PLN00184         49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP  128 (296)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence            56789999999999999999999998765443332345677899999999999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhhHHHHHHHHHHHhccccc-------cccccCCCCCchhhHHHHHHHHHHHHHHHHhhccCCCCcCch
Q 023184          126 WKQVPPYILCQVLGSTLAAGTLRLLFQEKQD-------QFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGEL  198 (286)
Q Consensus       126 ~~~~~~yi~aQ~lGa~~g~~l~~~~~~~~~~-------~~~~~~p~~~~~~~~~~E~~~Tf~l~~~v~~~~~~~~~~~~~  198 (286)
                      |.++++||++|++||++|+++++.+++....       ...++.|..+..++|+.|+++||+|+++++++..+++..+..
T Consensus       129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~  208 (296)
T PLN00184        129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL  208 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcc
Confidence            9999999999999999999999998853211       122345666888999999999999999999986666555567


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHHhcCCCcccccccccc
Q 023184          199 AGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSAS  278 (286)
Q Consensus       199 ~~~~ig~~v~~~~~~~g~~~~tG~~lNPAr~lg~~i~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~~~~~~~~  278 (286)
                      .++.||+++.+.+++.+  ++||++|||||+|||+++.+.|+++||||++|++|+++|+++|+++..++.+.++++++.+
T Consensus       209 ~~l~IG~~v~~~~~~~g--~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~~~~~  286 (296)
T PLN00184        209 AGLAIGSTVLLNVLIAA--PVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGS  286 (296)
T ss_pred             hHHHHHHHHHHHHHHhc--ccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhccchH
Confidence            89999999999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCC
Q 023184          279 FLKGAGRS  286 (286)
Q Consensus       279 ~~~~~~~~  286 (286)
                      |.|+.+++
T Consensus       287 ~~~~~~~~  294 (296)
T PLN00184        287 FLKTVRIG  294 (296)
T ss_pred             HHhhhccC
Confidence            99988763

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-27
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 3e-25
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 3e-25
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 3e-24
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 4e-24
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 4e-24
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 6e-24
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-23
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-23
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-23
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 6e-23
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 6e-23
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-22
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-21
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 1e-21
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-21
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 8e-21
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-19
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-17
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 5e-17
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-16
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-16
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-16
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-15
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-15
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-15
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-15
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-15
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 1e-11
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 3e-07
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 122/241 (50%), Gaps = 37/241 (15%)
Query: 52  QKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLV 94
           ++  AE++GT+ ++F G  + V+ L        P                  I + + L 
Sbjct: 7   KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 95  VMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK 154
           +  ++YSLG ISGAH NP+VTIA  +  RFP ++V PYI+ Q +G+ L +    LLF   
Sbjct: 67  IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLFLAC 122
Query: 155 QDQFAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGS 205
               A T+         P     QA + E I TF LM VI GVA D RA    AGL +G 
Sbjct: 123 VGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGL 182
Query: 206 TVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYK-GLW----IYIVAPPLGATAGAWVY 260
           TV   +   G   ITG+S+NPAR+ GP +  S     LW    IY++ P +GA A AW+Y
Sbjct: 183 TVGGIITTIGN--ITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLY 240
Query: 261 N 261
           N
Sbjct: 241 N 241
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 3e-87
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-86
2o9g_A234 Aquaporin Z; integral membrane protein, structural 7e-04
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-86
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 9e-86
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 7e-85
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-84
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-84
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-77
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-73
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-68
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-68
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 7e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-67
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-64
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
 Score =  259 bits (665), Expect = 3e-87
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 16/248 (6%)

Query: 33  PPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL-NNEKIVSLPGISIVW 91
                   ++  + S    +KL+AE  GT++++F GC S V      E  +   G+++ +
Sbjct: 12  HHHHHHHHENLYFQSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAF 71

Query: 92  GLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF 151
           GL V+ + Y++G ISG HFNP+V++      RFP   + PY++ QV G+ +AA  L ++ 
Sbjct: 72  GLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIA 131

Query: 152 QEK---------QDQFAGTLPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGL 201
             K          + +    P G S + A ++E I+T + + VI G +T  R     A +
Sbjct: 132 TGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPI 190

Query: 202 AVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQY--KGLWIYIVAPPLGATAGAWV 259
           A+G  + L  + +   P+T  S+NPARS G A+    +  + LW++ +AP +G  AGA +
Sbjct: 191 AIGLALTLIHLISI--PVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVI 248

Query: 260 YNMVRYTD 267
           + +    D
Sbjct: 249 WKLFGEKD 256
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.59
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.46
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.34
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.33
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.33
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.32
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.31
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.31
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.3
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.3
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.26
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.24
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.21
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 93.75
4fc4_A261 Nitrite transporter NIRC; alpha-helical inner memb 81.11
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.5e-53  Score=389.53  Aligned_cols=251  Identities=30%  Similarity=0.431  Sum_probs=208.5

Q ss_pred             eccccccc-cCCCCCCCCCCCCCCCC---CCccccHHHHHHHHHHHHHHHHHHHHhhhhhhccc--CCCCccCchhHHHH
Q 023184           17 KDCEDAIQ-NCPSSAAPPPPPSCGTK---DSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIVSLPGISIV   90 (286)
Q Consensus        17 ~~~~~~~~-~~~~~~~~~~~p~~~~~---~~~~~~~~l~~~~i~EfigTf~lv~~~~~~~~~~~--~~~~~~~~~~~al~   90 (286)
                      .+++..+| .++++.++++.|+....   ..+.++.+++|++++||+|||+|++++|++++...  .+....+++.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala   93 (340)
T 3iyz_A           14 ASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLC   93 (340)
T ss_pred             hhcChhhhcCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHH
Confidence            34555555 56778888888866432   23445678999999999999999999999877432  12223567789999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCChHhhHHHHHhcCCCCCcccchhhhhhhhHHHHHHHHHHHhccccccccc---cCCCCCc
Q 023184           91 WGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSN  167 (286)
Q Consensus        91 ~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~---~~p~~~~  167 (286)
                      ||+++++.+++++++||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++++......+   +.+..+.
T Consensus        94 ~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~  173 (340)
T 3iyz_A           94 FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTA  173 (340)
T ss_pred             HHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCH
Confidence            9999999999999999999999999999999999999999999999999999999999988654322111   2344578


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhccCCCC-cCchhHHHHHHHHHHHHHHHhcCCCCccccchhhhHHHHHhhcCCCceeeee
Q 023184          168 IQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYI  246 (286)
Q Consensus       168 ~~~~~~E~~~Tf~l~~~v~~~~~~~~~-~~~~~~~~ig~~v~~~~~~~g~~~~tG~~lNPAr~lg~~i~~~~~~~~wvy~  246 (286)
                      .++|+.|+++||+|+++++.+.++++. .....|+.||+++.++.+.++  ++||++|||||+|||+++.++|.++||||
T Consensus       174 ~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~IGl~v~i~~~~g~--~~TG~amNPARdlGPal~~~~w~~~WVyw  251 (340)
T 3iyz_A          174 GHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAI--NYTGASMNPARSFGPAVIMGNWENHWIYW  251 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhHHHHHHHHHHHhcc--CCccccccHHHHHHHHHHccCCCcEeehh
Confidence            899999999999999999998654443 245789999999988888777  89999999999999999999999999999


Q ss_pred             ecchHHHHHHHHHHHHHhcCCCc
Q 023184          247 VAPPLGATAGAWVYNMVRYTDKP  269 (286)
Q Consensus       247 v~p~~Ga~~a~~~~~~~~~~~~~  269 (286)
                      +||++|+++|+++|++++.++.+
T Consensus       252 vgPiiGailaallY~~l~~p~~~  274 (340)
T 3iyz_A          252 VGPIIGAVLAGALYEYVFCPDVE  274 (340)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChh
Confidence            99999999999999999866543
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-49
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-45
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-05
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 7e-43
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 9e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-41
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 7e-04
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  162 bits (410), Expect = 1e-49
 Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 47  SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHIS 106
           S  F + + AE   + F +F G  + +        + +  +++ +GL +  LV ++GHIS
Sbjct: 1   SASFWRAICAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHIS 58

Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
           GAH NP+VT A     +    +   Y++ Q+LG+   A  L  +               P
Sbjct: 59  GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 118

Query: 164 AGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITGAS 223
             S  QA ++E  +T   +  I     D R  G L  +A+     L +     M  TGA 
Sbjct: 119 GVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 177

Query: 224 MNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 282
           MNPARS  PAI++  +   W+Y V P +GA  G+ +Y+ + +    L+ +++  S LKG
Sbjct: 178 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG 234
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.36
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.34
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.29
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.17
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.8e-50  Score=349.84  Aligned_cols=220  Identities=28%  Similarity=0.451  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccCchhHHHHHHHHHHHHHHHhcCCCCCCCChHhhHHHHHhcCCCCC
Q 023184           48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK  127 (286)
Q Consensus        48 ~~l~~~~i~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~  127 (286)
                      .++||++++||+|||+++++++++.......  ..+...+++++|+++++.+++++++||||+|||||+++++.|+++|+
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~--~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~   79 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAPG--PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLL   79 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC-C--HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChh
Confidence            4699999999999999999999987644332  24556789999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhhHHHHHHHHHHHhccccccc---cccCCCCCchhhHHHHHHHHHHHHHHHHhhccCCCC-cCchhHHHH
Q 023184          128 QVPPYILCQVLGSTLAAGTLRLLFQEKQDQF---AGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAV  203 (286)
Q Consensus       128 ~~~~yi~aQ~lGa~~g~~l~~~~~~~~~~~~---~~~~p~~~~~~~~~~E~~~Tf~l~~~v~~~~~~~~~-~~~~~~~~i  203 (286)
                      +++.|+++|++||++|+++++.++++.....   ..+.|..+..++++.|+++|++|+++++.+.++++. .....++.+
T Consensus        80 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~i  159 (234)
T d1ymga1          80 RAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV  159 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHHH
T ss_pred             heeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEee
Confidence            9999999999999999999999987654332   224456688899999999999999999988654433 234678999


Q ss_pred             HHHHHHHHHHHhcCCCCccccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHHhcCCCccc
Q 023184          204 GSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLR  271 (286)
Q Consensus       204 g~~v~~~~~~~g~~~~tG~~lNPAr~lg~~i~~~~~~~~wvy~v~p~~Ga~~a~~~~~~~~~~~~~~~  271 (286)
                      |+++.+..+..+  +.||+++||||+|||+++.++|.++|+||++|++|+++|+++|++++.++.++.
T Consensus       160 g~~v~~~~~~~~--~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~  225 (234)
T d1ymga1         160 GFSLTLGHLFGM--YYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSV  225 (234)
T ss_dssp             HHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCH
T ss_pred             hHHHHHHHHHhc--ccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcch
Confidence            999999998888  899999999999999999999999999999999999999999999986655443
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure