Citrus Sinensis ID: 023188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP
Secondary Structure (PSIPRED)
cccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccEEccccEEEEEEEcccccccccccccEEEEEEccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccEEccccccccccccEEccccccccEccccccccEEEEEEEccEEEEccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEcccccccccccccccEEccccEEEEEEEccEEEEEEccccEEEEEEccccccEEccccEEEEEcc
Coil and Loop (DISEMBL)
masiwipcpkiswvapvgstggqqpqqQKQMLSfqnssnsnpslsfassapfsgfqcsikkqSAVWKVQAKVNDviakkplnstaavdtgsevasseEKVESAekkipdasAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRkkealqppecivnmpptmphmmyptpppaapaaaptpapapaspassvpvpalpppakksshpplkcpmagtfyrcpapgepafvkvgdkvqKGQVVCIIEAMKLMNEIEADQSGTIAEILAedgksvsvdtpllvivp
Flexible Loop (DISEMBL)
masiwipcpkisWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVNdviakkplnstaavdtgsevasseekvesaekkipdasaisaFMTQVSDLVKLVDSRDIMELQMKQSDCELIvrkkealqppeCIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILaedgksvsvdtpllvivp
Low Complexity Region (SEG)
MASIWIPCPKISWVAPVGSTGGqqpqqqkqMlsfqnssnsnpslsfassapfsGFQCSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGsevasseekvesaekkIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMpptmphmmyptpppaapaaaptpapapaspassvpvpalpppakksshpplKCPMAGTFYRCPAPGEPAFvkvgdkvqkgqvvCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP
Disordered region (IsUnstruct)
***IWIPCPKISWVAPV************************************GFQCSIKKQSAVWKVQAKVNDVIA***********************************ISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRK*****************************************************************CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI**
Disordered Region (DISOPRED)
****WIPCPKIS*******************************************************************************************************FMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEAL**********************************************************PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP
Disordered Region (DISEMBL)
MASIWIPCPKISWVAPVG**************************SFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAKKPLNSTA*********************IPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPP*********************PVPA***********PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP
Disordered Region (DISPRO)
**SIWIPCPKISWVAPVG***********Q*************LSFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAK**********************************ISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKE**********************************************************HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9LLC1	255	Biotin carboxyl carrier p	yes	no	0.863	0.968	0.476	5e-55
Q42783	262	Biotin carboxyl carrier p	no	no	0.569	0.622	0.597	2e-47
Q42533	280	Biotin carboxyl carrier p	no	no	0.597	0.610	0.589	4e-45
Q06881	182	Biotin carboxyl carrier p	yes	no	0.594	0.934	0.401	8e-26
P0ABE1	156	Biotin carboxyl carrier p	yes	no	0.534	0.980	0.404	3e-21
P0ABD8	156	Biotin carboxyl carrier p	N/A	no	0.534	0.980	0.404	3e-21
P0ABD9	156	Biotin carboxyl carrier p	yes	no	0.534	0.980	0.404	3e-21
P0ABE0	156	Biotin carboxyl carrier p	N/A	no	0.534	0.980	0.404	3e-21
Q1XDK5	158	Biotin carboxyl carrier p	N/A	no	0.524	0.949	0.343	6e-20
P37799	156	Biotin carboxyl carrier p	yes	no	0.258	0.474	0.540	1e-17

>sp|Q9LLC1|BCCP2_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1

 Score =  214 bits (546), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/294 (47%), Positives = 179/294 (60%), Gaps = 47/294 (15%)

Query: 1   MASIWIPCPKISWV-APVGSTGG---QQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQ 56
           MAS+ +PC KI  +   VGS  G   Q+ Q Q   +SF +  + N               
Sbjct: 1   MASLSVPCVKICALNRRVGSLPGISTQRWQPQPNGISFPSDVSQN--------------- 45

Query: 57  CSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAF 116
                 SA W+++A  N+V++    NST   + G            A+  +P+ + +S F
Sbjct: 46  -----HSAFWRLRATTNEVVS----NSTPMTNGGYMNGK-------AKTNVPEPAELSEF 89

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQ---PPECIVN-MPPTMPHMMYPT 172
           M +VS L+KLVDS+DI+EL++KQ DCE+++RKKEALQ   PP  + + MPP M      +
Sbjct: 90  MAKVSGLLKLVDSKDIVELELKQLDCEIVIRKKEALQQAVPPAPVYHSMPPVMADF---S 146

Query: 173 PPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFV 232
            PPA P A P      ++PA++ P  A       SSHPPLK PMAGTFYR P PGEP FV
Sbjct: 147 MPPAQPVALPPSPTPTSTPATAKPTSA-----PSSSHPPLKSPMAGTFYRSPGPGEPPFV 201

Query: 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           KVGDKVQKGQ+VCIIEAMKLMNEIEA++SGTI E+LAEDGK VSVDTPL VI P
Sbjct: 202 KVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELLAEDGKPVSVDTPLFVIAP 255

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42783|BCCP_SOYBN Biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic OS=Glycine max GN=ACCB-1 PE=1 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/184 (59%), Positives = 125/184 (67%), Gaps = 21/184 (11%)

Query: 112 AISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYP 171
           ++S F+TQV+ LVKLVDSRDI+EL++KQ D E+ +RKKEA+  P                
Sbjct: 91  SVSQFITQVASLVKLVDSRDIVELKLKQHDVEVTIRKKEAMPQPPPAPQPSVVYSPPPPA 150

Query: 172 TPPPAAPA---------AAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYR 222
            PPP  PA         A PTP  APA  ++            KSS PPLK PMAGTFYR
Sbjct: 151 LPPPPVPASTPAPTLARATPTPTSAPAVKSA------------KSSLPPLKSPMAGTFYR 198

Query: 223 CPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282
            PAPGEP+FVKVGDKV+KGQVVCIIEAMKLMNEIEADQSGTI EI+AED KSVSVDTPL 
Sbjct: 199 SPAPGEPSFVKVGDKVKKGQVVCIIEAMKLMNEIEADQSGTIVEIVAEDAKSVSVDTPLF 258

Query: 283 VIVP 286
           VI P
Sbjct: 259 VIQP 262

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Glycine max (taxid: 3847)

>sp|Q42533|BCCP1_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 126/178 (70%), Gaps = 7/178 (3%)

Query: 112 AISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYP 171
           +IS F+TQV+ LVKLVDSRDI+ELQ+KQ DCEL++RKKEAL  P+     P +   M  P
Sbjct: 107 SISEFLTQVTTLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPQA----PASYVMMQQP 162

Query: 172 TPPPAA---PAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGE 228
             P  A      A   A APA    +   P  PP   KSS P +K PMAGTFYR PAPGE
Sbjct: 163 NQPSYAQQMAPPAAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKSPMAGTFYRSPAPGE 222

Query: 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           P F+KVGDKVQKGQV+CI+EAMKLMNEIE+D +GT+ +I+AEDGK VS+DTPL V+ P
Sbjct: 223 PPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHTGTVVDIVAEDGKPVSLDTPLFVVQP 280

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06881|BCCP_NOSS1 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2

 Score =  117 bits (294), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 99/177 (55%), Gaps = 7/177 (3%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPEC-IVNMPPT-MPHMMYPTPP 174
             ++  L+  +   DI E+ +K  D EL VRK   +      +V  P + +     P+  
Sbjct: 5   FNEIRQLLTTIAQTDIAEVTLKSDDFELTVRKAVGVNNSVVPVVTAPLSGVVGSGLPSAI 64

Query: 175 PAAPAAAPTPAPAPASPASS---VPVPALPPPAK--KSSHPPLKCPMAGTFYRCPAPGEP 229
           P    AAP+P+P P +  ++   V      P AK        +  PM GTFYR PAPGE 
Sbjct: 65  PIVAHAAPSPSPEPGTSRAADHAVTSSGSQPGAKIIDQKLAEVASPMVGTFYRAPAPGEA 124

Query: 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
            FV+VGD++++GQ VCIIEAMKLMNEIEAD SG + EIL ++G+ V  + PL+ I P
Sbjct: 125 VFVEVGDRIRQGQTVCIIEAMKLMNEIEADVSGQVIEILVQNGEPVEYNQPLMRIKP 181

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0ABE1|BCCP_SHIFL Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Shigella flexneri GN=accB PE=3 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPA 176
           + ++  L++LV+   I EL++  S+ E  VR   A  P        P M    Y  P   
Sbjct: 3   IRKIKKLIELVEESGISELEI--SEGEESVRISRA-APAASF----PVM-QQAYAAPMMQ 54

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGD 236
            PA +   APA      +VP    P  A+ S H  ++ PM GTFYR P+P   AF++VG 
Sbjct: 55  QPAQSNAAAPA------TVPSMEAPAAAEISGHI-VRSPMVGTFYRTPSPDAKAFIEVGQ 107

Query: 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           KV  G  +CI+EAMK+MN+IEAD+SGT+  IL E G+ V  D PL+VI
Sbjct: 108 KVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Shigella flexneri (taxid: 623)

>sp|P0ABD8|BCCP_ECOLI Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli (strain K12) GN=accB PE=1 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPA 176
           + ++  L++LV+   I EL++  S+ E  VR   A  P        P M    Y  P   
Sbjct: 3   IRKIKKLIELVEESGISELEI--SEGEESVRISRA-APAASF----PVM-QQAYAAPMMQ 54

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGD 236
            PA +   APA      +VP    P  A+ S H  ++ PM GTFYR P+P   AF++VG 
Sbjct: 55  QPAQSNAAAPA------TVPSMEAPAAAEISGHI-VRSPMVGTFYRTPSPDAKAFIEVGQ 107

Query: 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           KV  G  +CI+EAMK+MN+IEAD+SGT+  IL E G+ V  D PL+VI
Sbjct: 108 KVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0ABD9|BCCP_ECOL6 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=accB PE=3 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPA 176
           + ++  L++LV+   I EL++  S+ E  VR   A  P        P M    Y  P   
Sbjct: 3   IRKIKKLIELVEESGISELEI--SEGEESVRISRA-APAASF----PVM-QQAYAAPMMQ 54

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGD 236
            PA +   APA      +VP    P  A+ S H  ++ PM GTFYR P+P   AF++VG 
Sbjct: 55  QPAQSNAAAPA------TVPSMEAPAAAEISGHI-VRSPMVGTFYRTPSPDAKAFIEVGQ 107

Query: 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           KV  G  +CI+EAMK+MN+IEAD+SGT+  IL E G+ V  D PL+VI
Sbjct: 108 KVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0ABE0|BCCP_ECO57 Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Escherichia coli O157:H7 GN=accB PE=3 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPA 176
           + ++  L++LV+   I EL++  S+ E  VR   A  P        P M    Y  P   
Sbjct: 3   IRKIKKLIELVEESGISELEI--SEGEESVRISRA-APAASF----PVM-QQAYAAPMMQ 54

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGD 236
            PA +   APA      +VP    P  A+ S H  ++ PM GTFYR P+P   AF++VG 
Sbjct: 55  QPAQSNAAAPA------TVPSMEAPAAAEISGHI-VRSPMVGTFYRTPSPDAKAFIEVGQ 107

Query: 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           KV  G  +CI+EAMK+MN+IEAD+SGT+  IL E G+ V  D PL+VI
Sbjct: 108 KVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 155

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q1XDK5|BCCP_PORYE Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Porphyra yezoensis GN=accB PE=3 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPA 176
           + ++ DL+  V  + I  L++KQ   EL++ K       E I                P+
Sbjct: 5   IKKLQDLLSSVQRKKIQTLKLKQGKFELLLNKTYKKVNQEII----------------PS 48

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGD 236
             +A    +P+    + +           ++ +  +  PM GTFY  PAPGE  FV+VGD
Sbjct: 49  QKSAVLQNSPSTIIKSINNTKKIFCVNEDRTEYATIVSPMVGTFYHSPAPGEKIFVQVGD 108

Query: 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282
           +V+  Q VCIIEAMKLMNEIEA+  G I EIL +DG  V     L+
Sbjct: 109 EVKFNQTVCIIEAMKLMNEIEAEIEGKIIEILVKDGDIVDCGQALM 154

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Porphyra yezoensis (taxid: 2788)

>sp|P37799|BCCP_PSEAE Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=accB PE=3 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 52/74 (70%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           ++ PM GTFYR  +P    FV+VG  V+KG ++CI+EAMK+MN IEA+ SGTI  IL E+
Sbjct: 83  VRSPMVGTFYRAASPTSANFVEVGQSVKKGDILCIVEAMKMMNHIEAEVSGTIESILVEN 142

Query: 272 GKSVSVDTPLLVIV 285
           G+ V  D PL  IV
Sbjct: 143 GQPVEFDQPLFTIV 156

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255570278	260	Biotin carboxyl carrier protein subunit	0.902	0.992	0.614	2e-77
224141067	284	predicted protein [Populus trichocarpa]	0.975	0.982	0.618	1e-75
224077764	281	predicted protein [Populus trichocarpa]	0.965	0.982	0.604	3e-74
225452976	270	PREDICTED: biotin carboxyl carrier prote	0.825	0.874	0.625	9e-74
401712956	270	biotin carboxyl carrier protein [Vernici	0.930	0.985	0.6	3e-72
253721463	270	biotin carboxyl carrier protein subunit	0.933	0.988	0.574	6e-69
356551156	276	PREDICTED: biotin carboxyl carrier prote	0.930	0.963	0.581	6e-69
12006187	284	biotin carboxyl carrier protein subunit	0.954	0.961	0.555	3e-67
351721795	284	biotin carboxyl carrier protein subunit	0.954	0.961	0.555	6e-67
357496855	278	Biotin carboxyl carrier protein of acety	0.926	0.953	0.585	3e-64

>gi|255570278|ref|XP_002526099.1| Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) [Ricinus communis] gi|223534596|gb|EEF36293.1| Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) [Ricinus communis]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/288 (61%), Positives = 206/288 (71%), Gaps = 30/288 (10%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIK 60
           MAS  +PCPK S++A +GS                N+SNS P  +   S P  GF+  I+
Sbjct: 1   MASTSVPCPKTSFIARIGS----------------NASNSLPKHTI--SFPSRGFKWPIR 42

Query: 61  KQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFMTQV 120
           KQSAV KV+A++N+VI K   NS   +DT S++A SE K E+  K +PDASAI+ FMTQV
Sbjct: 43  KQSAVTKVKAQLNEVIVKGSSNSVPMLDTNSKLAPSEVKDEAVVKNVPDASAITEFMTQV 102

Query: 121 SDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPEC--IVNMPPTMPHMMYPTPPPAAP 178
           SDLVKLVDSRDI ELQ+KQ DCE+I+RKKEALQPP    +++MPP+  H+M P PP AAP
Sbjct: 103 SDLVKLVDSRDITELQLKQLDCEIIIRKKEALQPPPAAQVISMPPSYQHVMLPPPPSAAP 162

Query: 179 AAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKV 238
             +  PAPA  SPA +V           SSHP  KCPMAGTFYRCPAPGEP FVKVGDKV
Sbjct: 163 PPSSAPAPALPSPAKAV----------TSSHPAFKCPMAGTFYRCPAPGEPPFVKVGDKV 212

Query: 239 QKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           QKGQVVCIIEAMKLMNEIEADQSGTI E+LAEDGK VSVDTPL VIVP
Sbjct: 213 QKGQVVCIIEAMKLMNEIEADQSGTITEVLAEDGKPVSVDTPLFVIVP 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141067|ref|XP_002323896.1| predicted protein [Populus trichocarpa] gi|222866898|gb|EEF04029.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 180/291 (61%), Positives = 203/291 (69%), Gaps = 12/291 (4%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQN--SSNSNPSLSFASSAPFSGFQCS 58
           MASI +PCPK   VA    +  Q P   K  +SF    +SN NPSLSF S+   SGF+  
Sbjct: 1   MASISVPCPKTVLVAAGTGSNAQNPLP-KPRISFPRPPNSNQNPSLSFGSTV--SGFEWP 57

Query: 59  IKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFMT 118
            +KQ AV KVQA++N+ IAKK  NS   VDT  +VASSE + E  E KIPD S+ISAFMT
Sbjct: 58  NRKQQAVVKVQAQLNEAIAKKSSNSALVVDTEPKVASSEGEDEPTESKIPDVSSISAFMT 117

Query: 119 QVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQ---PPECIVNMPPTMPHMMYPTPPP 175
           QVS+LVKLVDSRDI ELQ+KQSDCEL++RKKEALQ   P   I+ M P  PH  +P P P
Sbjct: 118 QVSELVKLVDSRDITELQLKQSDCELVIRKKEALQQSAPAAAILAMQPPYPHATFPAPLP 177

Query: 176 AAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVG 235
           AA  A     P+PA   +          A  SSHPPLKCPMAGTFYR PAPGEP FVK G
Sbjct: 178 AAAPAPAAAIPSPAPAPALPSPAK----ASSSSHPPLKCPMAGTFYRSPAPGEPPFVKAG 233

Query: 236 DKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           DKVQKGQV+CIIEAMKLMNEIEADQSGTI EI AEDGK VSVD+PL VIVP
Sbjct: 234 DKVQKGQVICIIEAMKLMNEIEADQSGTITEIPAEDGKPVSVDSPLFVIVP 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077764|ref|XP_002305399.1| predicted protein [Populus trichocarpa] gi|222848363|gb|EEE85910.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 176/291 (60%), Positives = 200/291 (68%), Gaps = 15/291 (5%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNS--SNSNPSLSFASSAPFSGFQCS 58
           MASI +PCPK   VA  G     Q  Q K M+SF  +  SN NP LS  S+  FSGF+  
Sbjct: 1   MASISVPCPKTILVA-AGVGSNAQNSQPKPMISFPRAPISNQNPPLSLGST--FSGFEWP 57

Query: 59  IKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFMT 118
            +KQ AV K QA++N+V+ +K  NS    D+ S+ ASSE K E  E KIPD S+ISAFMT
Sbjct: 58  NRKQQAVMKAQAQLNEVMVEKSSNSVLVGDSESKAASSEGKDEPTESKIPDVSSISAFMT 117

Query: 119 QVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQ---PPECIVNMPPTMPHMMYPTPPP 175
           QVS+LVKLVDSRDI ELQ+KQS CELI+RKKEALQ   P   ++ M    PH M+P PP 
Sbjct: 118 QVSELVKLVDSRDITELQLKQSGCELIIRKKEALQQSEPAAPVLPMQSPYPHAMFPAPPV 177

Query: 176 AAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVG 235
           AAPA AP    +  +        +       SSHPPLKCPMAGTFYR PAPGEP FVKVG
Sbjct: 178 AAPAPAPASPSSAPALPPPAKASS-------SSHPPLKCPMAGTFYRSPAPGEPPFVKVG 230

Query: 236 DKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           DKVQKGQVVCIIEAMKLMNEIEADQSGTI EI+A DGK VSVDTPL VI P
Sbjct: 231 DKVQKGQVVCIIEAMKLMNEIEADQSGTITEIVAADGKPVSVDTPLFVIAP 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452976|ref|XP_002284374.1| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic [Vitis vinifera] gi|296082996|emb|CBI22297.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 162/259 (62%), Positives = 188/259 (72%), Gaps = 23/259 (8%)

Query: 39  NSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEE 98
            +N  +SF    P  GFQC  +K++A+ K+ A++N+V A+K  NS     +   +  SE 
Sbjct: 24  QNNTQISF----PRFGFQCPNQKETALPKLHAQLNEVEAEKSSNSVPL--STKLIVPSEG 77

Query: 99  KVESAEK------KIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEAL 152
           K ESA K       IPDAS+ISAFM+QVSDLVKLVDSRDIMEL++KQ  CEL++RKKEAL
Sbjct: 78  KYESARKISSQKNTIPDASSISAFMSQVSDLVKLVDSRDIMELELKQLGCELLIRKKEAL 137

Query: 153 -QPPEC--IVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAK--KS 207
            QPP    ++ M P +PH M P  PP      P    APAS A SVP PALP PA+  KS
Sbjct: 138 PQPPATASVITMQPPLPHSMLPYQPP------PAQVVAPASTAPSVPTPALPAPAQTSKS 191

Query: 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI 267
           SHPPLKCPMAGTFY+ P PGEP FVKVGDKVQKGQVVCI+EAMKLMNEIEADQSGTIAEI
Sbjct: 192 SHPPLKCPMAGTFYQSPGPGEPPFVKVGDKVQKGQVVCIVEAMKLMNEIEADQSGTIAEI 251

Query: 268 LAEDGKSVSVDTPLLVIVP 286
           LAEDGK VS+DTPLLVI P
Sbjct: 252 LAEDGKPVSIDTPLLVIAP 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|401712956|gb|AFP99173.1| biotin carboxyl carrier protein [Vernicia fordii]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 174/290 (60%), Positives = 201/290 (69%), Gaps = 24/290 (8%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNP--SLSFA-SSAPFSGFQC 57
           MASI +PCPK + VA  GS                N++N  P  ++SF   ++   GFQ 
Sbjct: 1   MASISVPCPKTALVARFGS----------------NATNPLPKSTISFPPRASSLLGFQW 44

Query: 58  SIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFM 117
           S +KQS V KVQA++N+V+A+K  NS   +D  S+V SSE+K E AE  IPDASAISAFM
Sbjct: 45  SNRKQSPVTKVQAQLNEVLAEKSSNSVPVLDNNSKVPSSEQKDEPAENNIPDASAISAFM 104

Query: 118 TQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQ-PPECIVNMPPTMPHMMYPTPPPA 176
           TQVSDLVKLVDSRDI ELQ+KQ  CELI+RKKEALQ PP  ++   P+  H M P+PP A
Sbjct: 105 TQVSDLVKLVDSRDITELQLKQLGCELIIRKKEALQQPPPPVIAAQPSYQHAMLPSPPLA 164

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGD 236
           APA+AP  +  P    +          +  SSHP LKCPMAGTFYRCPAPGEP FVKV D
Sbjct: 165 APASAPPSSTPPPPAPALPSPAK----SSTSSHPQLKCPMAGTFYRCPAPGEPPFVKVRD 220

Query: 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           KVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL EDGK VSVD PL VI P
Sbjct: 221 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILVEDGKPVSVDLPLFVIAP 270

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|253721463|gb|ACT33948.1| biotin carboxyl carrier protein subunit [Jatropha curcas]

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 166/289 (57%), Positives = 189/289 (65%), Gaps = 22/289 (7%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIK 60
           MASI +PCPK + VA +GS   + P          NS+ S P L+    +   GFQ    
Sbjct: 1   MASISVPCPKTTLVARIGS-NVENP--------LPNSTVSFPPLT----SNLLGFQWCNW 47

Query: 61  KQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIPDASAISAFMTQV 120
           KQS V K+QAK+N+V+ +K  NS   ++T S V + +EK ES E  I DAS ISAFMTQV
Sbjct: 48  KQSRVTKMQAKLNEVLLEKSSNSVPVLETNSNVPTPDEKDESTESNILDASQISAFMTQV 107

Query: 121 SDLVKLVDSRDIMELQMKQSDCELIVRKKEALQ--PPEC-IVNMPPTMPHMMYPTPPPAA 177
           SDLVKLVDSRDI ELQ+KQ  C+LI+RKKEALQ  PP   ++ MPP+  H M        
Sbjct: 108 SDLVKLVDSRDITELQLKQLGCQLIIRKKEALQQPPPAAPVIAMPPSYQHTM------LP 161

Query: 178 PAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDK 237
                 PA AP S          P     SSHPPLKCPMAGTFYR PAPGEP FVKVGDK
Sbjct: 162 SPPPAAPASAPPSSPPLALALPPPAKTSSSSHPPLKCPMAGTFYRNPAPGEPPFVKVGDK 221

Query: 238 VQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           VQKGQVVCIIEAMKLMNEIEADQ+GTIAEIL EDGK VSVD PL VI P
Sbjct: 222 VQKGQVVCIIEAMKLMNEIEADQAGTIAEILVEDGKPVSVDMPLFVIAP 270

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551156|ref|XP_003543944.1| PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like [Glycine max]

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 172/296 (58%), Positives = 192/296 (64%), Gaps = 30/296 (10%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQM-LSFQNSSNSNPSLSFAS---SAPFSGFQ 56
           MAS  +PCPK        +T    P   K + +SFQ   +  PSLSF S    +  S  Q
Sbjct: 1   MASFSVPCPKCP------TTSSSPPLGLKSLNVSFQRVLSLKPSLSFGSLSAESAASRIQ 54

Query: 57  CSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEK----KIPDASA 112
           C  +KQ +V K     N        NS   +  G  VASS+EK     K     IPD ++
Sbjct: 55  CLNRKQFSVLKATKVENS-------NSAPVMVNGPNVASSKEKEVHNGKLSGGTIPDDAS 107

Query: 113 ISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPT 172
           I AFM+QVSDLVKLVDSRDI+ELQ+KQSDCEL++RKKEALQPP  I    PT P M Y T
Sbjct: 108 IIAFMSQVSDLVKLVDSRDIVELQLKQSDCELMIRKKEALQPPPVIA---PTSPPMHYAT 164

Query: 173 PPPAAPAAAPTPAPAPASPASSVPVPALPPPAK--KSSHPPLKCPMAGTFYRCPAPGEPA 230
            P   P  A  PA +    A    VPALP PAK   SSHP LKCPMAGTFYR PAPGEPA
Sbjct: 165 VPSPPPPPAAAPASSAPPKA----VPALPSPAKAGTSSHPTLKCPMAGTFYRSPAPGEPA 220

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           FVKVGDKVQKGQV+CIIEAMKLMNEIEADQSGTIAE+LAEDGK VSVDTPL VIVP
Sbjct: 221 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTIAEVLAEDGKPVSVDTPLFVIVP 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12006187|gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit [Glycine max]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/297 (55%), Positives = 195/297 (65%), Gaps = 24/297 (8%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFAS----SAPFSGFQ 56
           MAS  IPCPK   V P    G     QQ+  L  + S      LSF S    SAP +G Q
Sbjct: 1   MASFTIPCPKC-VVVPFAHLGLNSQTQQRNALGLKKS------LSFGSLSSDSAP-NGIQ 52

Query: 57  CSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEK-----KIPDAS 111
           C  KKQS+VWK+QA+  + +  +  NS      G ++A  EEK +   K        DAS
Sbjct: 53  CLNKKQSSVWKLQAQPKEAVTVE--NSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADAS 110

Query: 112 AISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYP 171
           +ISAFM QVSDLVKLVDS+DIMELQ+KQ++CEL++RKKEAL PP      P + P   +P
Sbjct: 111 SISAFMNQVSDLVKLVDSKDIMELQLKQANCELVIRKKEALLPPPATFVAPVSQP---FP 167

Query: 172 TPPPAAPAAAPT--PAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEP 229
            P  + PAA P+   +   +SP+S       P  A KSSHP LKCPMAGTFYR PAPGEP
Sbjct: 168 YPTNSLPAAPPSVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGEP 227

Query: 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
            FVKVGDKVQKGQV+CIIEAMKLMNEIEADQSGT+AE++AEDGK VSVDTPL VIVP
Sbjct: 228 PFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721795|ref|NP_001235174.1| biotin carboxyl carrier protein subunit [Glycine max] gi|12006165|gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit precursor [Glycine max]

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 165/297 (55%), Positives = 194/297 (65%), Gaps = 24/297 (8%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFAS----SAPFSGFQ 56
           MAS  IPCPK   V P    G     QQ+  L  + S      LSF S    SAP +G Q
Sbjct: 1   MASFTIPCPKC-VVVPFAHLGLNSQTQQRNALGLKKS------LSFGSLSSDSAP-NGIQ 52

Query: 57  CSIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEK-----KIPDAS 111
           C  KKQS+VWK+QA+  + +  +  NS      G ++A  EEK +   K        DAS
Sbjct: 53  CLNKKQSSVWKLQAQPKEAVTVE--NSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADAS 110

Query: 112 AISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYP 171
           +ISAFM QVSDLVKLVDS+DIMELQ+KQ++CEL++RKKEAL PP      P + P   +P
Sbjct: 111 SISAFMNQVSDLVKLVDSKDIMELQLKQANCELVIRKKEALLPPPATFVAPVSQP---FP 167

Query: 172 TPPPAAPAAAP--TPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEP 229
            P  + PAA P    +   +SP+S       P  A KSSHP LKCPMAGTFYR PAPGEP
Sbjct: 168 YPTNSLPAAPPPVATSTPASSPSSKAAPALPPAKASKSSHPALKCPMAGTFYRSPAPGEP 227

Query: 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
            FVKVGDKVQKGQV+CIIEAMKLMNEIEADQSGT+AE++AEDGK VSVDTPL VIVP
Sbjct: 228 PFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496855|ref|XP_003618716.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula] gi|355493731|gb|AES74934.1| Biotin carboxyl carrier protein of acetyl-CoA carboxylase [Medicago truncatula]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 175/299 (58%), Positives = 197/299 (65%), Gaps = 34/299 (11%)

Query: 1   MASIWIPCPKISWVAPV-GSTGGQQPQQ--QKQMLSFQNSSNSNPSLSFASSAPFSGFQC 57
           MAS  +PCPK     PV  S  G +  +   +  LS +NS  S  SLS A SA F G QC
Sbjct: 1   MASFSVPCPK----CPVPSSLLGLKSNKILFQSGLSLKNS-QSFGSLS-AESASF-GIQC 53

Query: 58  SIKKQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEKVESAEKKIP-----DASA 112
             KKQ  V K+QA++N+    + LNS   V      ASSEEK E+    +P     D SA
Sbjct: 54  LNKKQFPV-KIQAQLNEAAVVENLNSAPTV------ASSEEK-ENQNGSVPASTVSDESA 105

Query: 113 ISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPT-MPHMMYP 171
           ISAFM+QV+DLV LVDSRDI+ELQ+KQSD EL++RKKEALQPP      P T MP    P
Sbjct: 106 ISAFMSQVADLVILVDSRDIVELQLKQSDYELVIRKKEALQPP------PATAMPQSAPP 159

Query: 172 TPPPAAPAAAPTPAPAPASPASSVP---VPALPPP-AKKSSHPPLKCPMAGTFYRCPAPG 227
              P  P   P P  A ++ ASS P    PALPPP    SSHPPLKCPMAGTFYRCP PG
Sbjct: 160 LYYPTLPLPPPPPPTAYSATASSPPSKATPALPPPKTSASSHPPLKCPMAGTFYRCPGPG 219

Query: 228 EPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           EP FV+VGD VQKGQV+CIIEAMKLMNEIEADQSGTIAEIL EDGK VSVD PL VIVP
Sbjct: 220 EPPFVQVGDTVQKGQVICIIEAMKLMNEIEADQSGTIAEILVEDGKPVSVDLPLFVIVP 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2180927	255	BCCP2 "biotin carboxyl carrier	0.258	0.290	0.675	4.7e-41
TAIR|locus:2171307	280	CAC1 "chloroplastic acetylcoen	0.258	0.264	0.608	7.2e-36
UNIPROTKB|Q9KV61	196	VC_0296 "Acetyl-CoA carboxylas	0.244	0.357	0.514	1.8e-17
TIGR_CMR|VC_0296	196	VC_0296 "acetyl-CoA carboxylas	0.244	0.357	0.514	1.8e-17
UNIPROTKB|P0ABD8	156	accB [Escherichia coli K-12 (t	0.251	0.461	0.5	6e-17
TIGR_CMR|CPS_0947	148	CPS_0947 "acetyl-CoA carboxyla	0.251	0.486	0.444	1.4e-15
TIGR_CMR|BA_4409	164	BA_4409 "acetyl-CoA carboxylas	0.244	0.426	0.402	1.3e-13
TIGR_CMR|SPO_1011	164	SPO_1011 "acetyl-CoA carboxyla	0.244	0.426	0.428	6.8e-13
TIGR_CMR|CHY_1999	617	CHY_1999 "oxaloacetate decarbo	0.244	0.113	0.528	1.1e-12
TIGR_CMR|GSU_2020	158	GSU_2020 "acetyl-CoA carboxyla	0.251	0.455	0.402	1.4e-12

TAIR|locus:2180927 BCCP2 "biotin carboxyl carrier protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.7e-41, Sum P(3) = 4.7e-41
 Identities = 50/74 (67%), Positives = 53/74 (71%)

Query:   213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
             K PMAGTFYR P PGEP F             CIIEAMKLMNEIEA++SGTI E+LAEDG
Sbjct:   182 KSPMAGTFYRSPGPGEPPFVKVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELLAEDG 241

Query:   273 KSVSVDTPLLVIVP 286
             K VSVDTPL VI P
Sbjct:   242 KPVSVDTPLFVIAP 255

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009374 "biotin binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2171307 CAC1 "chloroplastic acetylcoenzyme A carboxylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 45/74 (60%), Positives = 53/74 (71%)

Query:   213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
             K PMAGTFYR PAPGEP F             CI+EAMKLMNEIE+D +GT+ +I+AEDG
Sbjct:   207 KSPMAGTFYRSPAPGEPPFIKVGDKVQKGQVLCIVEAMKLMNEIESDHTGTVVDIVAEDG 266

Query:   273 KSVSVDTPLLVIVP 286
             K VS+DTPL V+ P
Sbjct:   267 KPVSLDTPLFVVQP 280

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS;TAS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0009374 "biotin binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q9KV61 VC_0296 "Acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 189 (71.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 36/70 (51%), Positives = 45/70 (64%)

Query:   215 PMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
             PM GTFYR P+P   AF             CI+EAMK+MN+IEAD+SG +  IL EDG++
Sbjct:   126 PMVGTFYRSPSPDAKAFIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQT 185

Query:   275 VSVDTPLLVI 284
             V  D PL+VI
Sbjct:   186 VEFDQPLVVI 195

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|VC_0296 VC_0296 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 189 (71.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 36/70 (51%), Positives = 45/70 (64%)

Query:   215 PMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
             PM GTFYR P+P   AF             CI+EAMK+MN+IEAD+SG +  IL EDG++
Sbjct:   126 PMVGTFYRSPSPDAKAFIEVGQSVSVGDTLCIVEAMKMMNQIEADKSGVVTAILVEDGQT 185

Query:   275 VSVDTPLLVI 284
             V  D PL+VI
Sbjct:   186 VEFDQPLVVI 195

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

UNIPROTKB|P0ABD8 accB [Escherichia coli K-12 (taxid:83333)]

 Score = 184 (69.8 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
 Identities = 36/72 (50%), Positives = 45/72 (62%)

Query:   213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
             + PM GTFYR P+P   AF             CI+EAMK+MN+IEAD+SGT+  IL E G
Sbjct:    84 RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 143

Query:   273 KSVSVDTPLLVI 284
             + V  D PL+VI
Sbjct:   144 QPVEFDEPLVVI 155

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;IGI;IDA;IMP

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IC

GO:0009317 "acetyl-CoA carboxylase complex" evidence=IEA;IDA

GO:0009374 "biotin binding" evidence=IDA

TIGR_CMR|CPS_0947 CPS_0947 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 171 (65.3 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query:   213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
             + PM GT+Y   +P  PAF             CI+EAMK+MN+IEAD+SG I EILA++ 
Sbjct:    76 RSPMVGTYYASASPDSPAFAEVGKHVNAGDTLCIVEAMKMMNQIEADKSGVIKEILAQNE 135

Query:   273 KSVSVDTPLLVI 284
              ++  D PL +I
Sbjct:   136 DAIEFDQPLFII 147

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|BA_4409 BA_4409 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 135 (52.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 29/72 (40%), Positives = 37/72 (51%)

Query:   215 PMAGTFYRCPA--PGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
             PM GTFY   +  P  P +             CI+EAMKL NEI+AD  G I EIL  +G
Sbjct:    91 PMVGTFYSSSSSSPDTPPYVSVGDRVSKDSIVCIVEAMKLFNEIDADVDGEIVEILVNNG 150

Query:   273 KSVSVDTPLLVI 284
             + V    PL ++
Sbjct:   151 QLVEYGQPLFLV 162

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|SPO_1011 SPO_1011 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 149 (57.5 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 30/70 (42%), Positives = 38/70 (54%)

Query:   215 PMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
             PM GT Y  P PG P+F              I+EAMK MN I A ++GT+  IL  DG +
Sbjct:    94 PMVGTVYLQPEPGAPSFVSVGASVAEGDTLLIVEAMKTMNHIHAPRAGTVKRILVGDGDA 153

Query:   275 VSVDTPLLVI 284
             V   TPL++I
Sbjct:   154 VEFGTPLVII 163

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|CHY_1999 CHY_1999 "oxaloacetate decarboxylase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 37/70 (52%), Positives = 42/70 (60%)

Query:   215 PMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
             PM GTFYR PAPG P F             CIIEAMKLMNEIE++ SG I EIL E+G+ 
Sbjct:   546 PMVGTFYRAPAPGAPPFVEVGQKIKPGDVLCIIEAMKLMNEIESEISGEIVEILVENGEM 605

Query:   275 VSVDTPLLVI 284
             V    PL  +
Sbjct:   606 VEYGQPLFKV 615

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008948 "oxaloacetate decarboxylase activity" evidence=ISS

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

TIGR_CMR|GSU_2020 GSU_2020 "acetyl-CoA carboxylase, biotin carboxyl carrier protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 140 (54.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 29/72 (40%), Positives = 38/72 (52%)

Query:   215 PMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
             P+ GTFYR PAP    +             CI+EAMKLMNEIEA+    I +I  E+ + 
Sbjct:    86 PIVGTFYRAPAPDAAPYVEVGQVVEKGQVLCIVEAMKLMNEIEAEFRCKIVQICKENAQP 145

Query:   275 VSVDTPLLVIVP 286
             V    PL ++ P
Sbjct:   146 VEFGEPLFIVEP 157

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LLC1	BCCP2_ARATH	No assigned EC number	0.4761	0.8636	0.9686	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	1e-95
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	4e-45
TIGR00531	156	TIGR00531, BCCP, acetyl-CoA carboxylase, biotin ca	8e-36
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	3e-30
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	1e-27
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	3e-23
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	4e-23
PRK07051	80	PRK07051, PRK07051, hypothetical protein; Validate	3e-18
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	1e-17
PRK05641	153	PRK05641, PRK05641, putative acetyl-CoA carboxylas	3e-14
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	7e-14
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	1e-13
PRK06549	130	PRK06549, PRK06549, acetyl-CoA carboxylase biotin	2e-13
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	1e-11
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	2e-11
TIGR01108	582	TIGR01108, oadA, oxaloacetate decarboxylase alpha	1e-10
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	5e-10
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	6e-10
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	2e-09
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	3e-09
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	5e-09
TIGR01235	1143	TIGR01235, pyruv_carbox, pyruvate carboxylase	4e-08
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	9e-08
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	2e-07
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	4e-07
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-06
PRK14042	596	PRK14042, PRK14042, pyruvate carboxylase subunit B	3e-06
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	1e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	4e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-04
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	9e-04
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.001
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	0.004

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score =  282 bits (723), Expect = 1e-95
 Identities = 167/296 (56%), Positives = 191/296 (64%), Gaps = 32/296 (10%)

Query: 1   MASIWIPCPKISWVAPVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIK 60
           MAS+ +PC K +  A    +   +   + Q           P++SF S  P         
Sbjct: 1   MASLSVPCAKTAAAAANVGSRLSRSSFRLQ---------PKPNISFPSKGP-------NP 44

Query: 61  KQSAVWKVQAKVNDVIAKKPLNSTAAVDTGSEVASSEEK-----VESAEKKIPDASAISA 115
           K+SAV KV+A++N+V      NS  + D  SEVA SE K       S++  +PD  +IS 
Sbjct: 45  KRSAVPKVKAQLNEVAVDGSSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISE 104

Query: 116 FMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQ---PPECIVNMPPTMPHMMYPT 172
           FMTQVS LVKLVDSRDI+ELQ+KQ DCEL++RKKEAL    PP  +V M P  PH M P 
Sbjct: 105 FMTQVSSLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPA 164

Query: 173 PPPAAPAAAPTPAPAPASPASSVPVPALPPPAK--KSSHPPLKCPMAGTFYRCPAPGEPA 230
            PPAA  A   PA +P       P PA PPPAK  KSSHPPLK PMAGTFYR PAPGEP 
Sbjct: 165 SPPAAQPAPSAPASSPP------PTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEPP 218

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTI EILAEDGK VSVDTPL VI P
Sbjct: 219 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274

Length = 274

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score =  149 bits (379), Expect = 4e-45
 Identities = 64/167 (38%), Positives = 87/167 (52%), Gaps = 16/167 (9%)

Query: 119 QVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAP 178
           ++  L++LVD   I E ++K+ +  + + +  A           P  P        P A 
Sbjct: 5   KIKKLIELVDESGISEFEIKEGEESVRISRAAA----------APVAPVAQQAAAAPVAA 54

Query: 179 AAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKV 238
           A A   A A A  A+     A       +S      PM GTFYR P+P  P FV+VGD V
Sbjct: 55  APAAAAAAAAAPAAAPAAAAAEAEGHVVTS------PMVGTFYRAPSPDAPPFVEVGDTV 108

Query: 239 QKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285
           ++GQ +CIIEAMK+MNEIEAD+SG + EIL E+G+ V    PL VI 
Sbjct: 109 KEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155

Length = 155

>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein

 Score =  125 bits (316), Expect = 8e-36
 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 21/171 (12%)

Query: 117 MTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPA 176
           + ++ +L+KL++   I EL++K+ + E+ + K                            
Sbjct: 3   IREIKELIKLIEESGITELELKEEEFEVRLSK------------------AAAAAKKSAV 44

Query: 177 APAAAPTPAPAPASPASSVPVPALPPPAKKS---SHPPLKCPMAGTFYRCPAPGEPAFVK 233
             AAAP PA  PA+P++  P PA+  PA          ++ PM GTFYR P+P    FV+
Sbjct: 45  QQAAAPVPAQVPAAPSAQAPAPAVCAPAPAKADKKGHFVRSPMVGTFYRAPSPDAKPFVE 104

Query: 234 VGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           VGDKV+KGQ+VCI+EAMKLMNEIEA+ +G + EIL E+G+ V    PL+VI
Sbjct: 105 VGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVI 155

This model is designed to identify biotin carboxyl carrier protein as a peptide of acetyl-CoA carboxylase. Scoring below the trusted cutoff is a related protein encoded in a region associated with polyketide synthesis in the prokaryote Saccharopolyspora hirsuta, and a reported chloroplast-encoded biotin carboxyl carrier protein that may be highly derived from the last common ancestral sequence. Scoring below the noise cutoff are biotin carboxyl carrier domains of other enzymes such as pyruvate carboxylase.The gene name is accB or fabE [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 156

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score =  110 bits (277), Expect = 3e-30
 Identities = 59/165 (35%), Positives = 81/165 (49%), Gaps = 27/165 (16%)

Query: 122 DLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAA 181
           +L+KLV   D  E ++K  + E+ + +K  +                     P  AP  A
Sbjct: 3   ELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQDV-----------------PAPAPIEA 45

Query: 182 PTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG 241
            +P+ A A PA+S P PA   PA  +    +  PM GT Y+        FV+VGD V+ G
Sbjct: 46  SSPSAAAAQPAASAPAPA---PAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAG 95

Query: 242 QVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
           Q + IIEAMK+ NEIEA   G + EIL ++G  V    PL VI P
Sbjct: 96  QTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140

Length = 140

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score =  111 bits (280), Expect = 1e-27
 Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 170 YPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEP 229
                P        P      P   + V   P  +       +  PM GT  +       
Sbjct: 486 AEGKRPFYLRVDGMPEEVVVEPLKEIVVGGRPRASAPG---AVTSPMPGTVVK------- 535

Query: 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
             VK GDKV+ G  V ++EAMK+ NEI+A   GT+ EIL ++G  V+    L+ I P
Sbjct: 536 VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592

Length = 592

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 90.0 bits (224), Expect = 3e-23
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAE 270
            +K PM G   +         VKVGDKV+ GQV+C +EAMK+  EI A  +G + EIL +
Sbjct: 2   EIKSPMIGESVK--EGTAEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 271 DGKSVSVDTPLLVI 284
           +G +V V  PL  I
Sbjct: 60  EGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 89.4 bits (223), Expect = 4e-23
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           +  PM GT  +         VK GDKV+ GQ + ++EAMK+ NE+ A  +G + EIL ++
Sbjct: 2   VTAPMPGTVVKV-------LVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKE 54

Query: 272 GKSVSVDTPLLVI 284
           G  V     L+VI
Sbjct: 55  GDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated

 Score = 77.4 bits (191), Expect = 3e-18
 Identities = 33/73 (45%), Positives = 44/73 (60%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           +  P+ GTFYR P+P  P +V+VGD V  G VV +IE MK   E+EA+ +G + E L ED
Sbjct: 6   IVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVED 65

Query: 272 GKSVSVDTPLLVI 284
           G+ V     L  I
Sbjct: 66  GEPVEAGQVLARI 78

Length = 80

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 174 PPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVK 233
           P A  AA    A A  + A+  PV A               P+AG  ++         V 
Sbjct: 504 PAAPAAAPAAAAAAAPAAAAGEPVTA---------------PLAGNIFK-------VIVT 541

Query: 234 VGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285
            G  V +G V+ I+EAMK+  EI A Q+GT+  I  ++G +V+V   LL + 
Sbjct: 542 EGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593

Length = 593

>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPP--LKCPMAGTFYRCPAPGE 228
                      P PAPAPA P++  PV    P    +S     +  PM G   R      
Sbjct: 44  DLSAVQEQVPTPAPAPAPAVPSAPTPVAPAAPAPAPASAGENVVTAPMPGKILR------ 97

Query: 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282
              V+ G +V+ GQ + I+EAMK+ NEI A + G + +IL ++G +V    PL+
Sbjct: 98  -ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLI 150

Length = 153

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 65.1 bits (160), Expect = 7e-14
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            VK GD V++G V+  +E  K   E+EA  +G +A+IL E+G +V V   + VI
Sbjct: 21  LVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 7/68 (10%)

Query: 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVS 276
            GT  +          KVGDKV+KG V+  IEAMK  +++EA +SGT+ ++L ++G  V 
Sbjct: 13  DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVE 65

Query: 277 VDTPLLVI 284
            DTPL+ I
Sbjct: 66  GDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|235826 PRK06549, PRK06549, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPA 230
               PA PA+ P P P  ASP      P     A   + P    PM GT  +        
Sbjct: 26  QAAAPAQPASTPVPVPTEASPQVEAQAPQPAAAAGADAMP---SPMPGTILK-------V 75

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            V VGD+V + Q + I+EAMK+ NEI A  +GT+  I    G+ V+    L+ I
Sbjct: 76  LVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129

Length = 130

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 174 PPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPP-----LKCPMAGTFYRCPAPGE 228
              A   A              P  A       +         L  PM GT         
Sbjct: 535 RKRAVRVARAGGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVS------ 588

Query: 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
              VK G +V  G ++ ++EAMK+ N + A + G +A++   +G  V+V T L+    
Sbjct: 589 -VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645

Length = 645

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            VKVGD V++GQ +  +E  K   EI +  +GT+A++L E+G  V V + + VI
Sbjct: 23  LVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVI 76

Length = 411

>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 189 ASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248
            + ++          AK  +  P+  P+AG+  +         V  G  V +G+V+ I+E
Sbjct: 497 ITASAPANTSGGTVAAKAGAGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILE 549

Query: 249 AMKLMNEIEADQSGTIAEILAEDGKSVSVDTPL 281
           AMK+  EI+A  +GT+ EIL + G +VSV   L
Sbjct: 550 AMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 189  ASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248
            A  A  V                ++   AG F++         V+VGD+V+ GQ + I+E
Sbjct: 1112 ADLAEEVTEAPEEEADLPEGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILE 1164

Query: 249  AMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            AMK+   + A  +G + +IL + G  V     + V+
Sbjct: 1165 AMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 172 TPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPA- 230
               AAPAAA  PA A A+  +          A                 + P  GE   
Sbjct: 81  AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGG--------GVVEVKVPDIGEITE 132

Query: 231 ------FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
                  VKVGD V++ Q +  +E  K   EI +  +G + EI  + G  VSV + L+VI
Sbjct: 133 VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVI 192

Length = 547

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 215  PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
            PM G             VK GDKV+KG V+ +IEAMK+   I A   GT+ E+L +DG  
Sbjct: 1085 PMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD- 1136

Query: 275  VSVDTPLLVIV 285
              +D   L++V
Sbjct: 1137 -QIDGGDLLVV 1146

Length = 1149

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 215  PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
            PM G+            VK GD+V+ G  + +IEAMK+   I A   GT+  +L + G  
Sbjct: 1082 PMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ 1134

Query: 275  VSVDTPLLVIVP 286
            V     L+ + P
Sbjct: 1135 VEAGDLLVELEP 1146

Length = 1146

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
             KVGDKV++G V+  +E  K   E+ A  +G +A+IL E+G +V V   +  I
Sbjct: 23  LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARI 76

Length = 404

>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 215  PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
            PM G             V  G  V KG  + ++EAMK+   I+A + GTI E+L + G+ 
Sbjct: 1080 PMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ 1132

Query: 275  VSVDTPLLVI 284
            +     LLV+
Sbjct: 1133 IDAKDLLLVL 1142

This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            KVGD V++ +V+CIIE  K+  +I A  SG I +I AE+G +V V  PL  I
Sbjct: 66  KKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEI 118

Length = 418

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 7/60 (11%)

Query: 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSV 275
           MAG  ++         VKVGD V++GQ V I+E+MK+   I A+++GT+ +I  ++G  V
Sbjct: 8   MAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFV 60

Length = 70

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286
            V+ GD+V+KG  +  +E  K+ NE+EA  +GT+   +A++G+++ V   L V+  
Sbjct: 23  LVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78

Length = 371

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 34/54 (62%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
             K GD V++ +V+  IE  K++ E+ A  +G ++EILAE+G +V+V   L  I
Sbjct: 23  HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRI 76

Length = 407

>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVS 276
           V  GD+V+ GQ V +IEAMK+  EI+A  +G +AEIL + G  V+
Sbjct: 541 VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVT 585

Length = 596

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           KVGD V++ + +  IE  K++ E+ +   G + EIL ++G +V     L ++
Sbjct: 23  KVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAIL 74

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV 285
            K GDKV+ G V+  IE  K   E+EA   GT+ +IL  +G + V V+TP+ V++
Sbjct: 24  KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78

Length = 464

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 171 PTPPPAAPAAAPTP-APAPA-SPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGE 228
           P P    P AAP P APAPA +PA+  P PA P          +K P  G          
Sbjct: 86  PAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELGESV-TEGTVT 144

Query: 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
                VGD V+  + +  +   K+  EI +  +GT+ EI A +  +V V T L +I
Sbjct: 145 SWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGTVLAII 200

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLK 213
              P A   AAP PAP  A+  ++ P PA    A  +   P  
Sbjct: 59  AAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPP 211
              P    AAAP   P PA+ A++   PA PP A  ++ P 
Sbjct: 69  APAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109

Length = 1228

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 175 PAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKV 234
            A       PAP   +PA +    A P   + S    +  P  G   +         VKV
Sbjct: 82  QAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIEK--VTVIEVLVKV 139

Query: 235 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           GD V   Q +  +E+ K   E+ A  SG +  +  + G SV     +L +
Sbjct: 140 GDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTL 189

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 14/54 (25%), Positives = 18/54 (33%)

Query: 162 PPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCP 215
           P           PPAA A A  P PA A+ A++ P       A  +        
Sbjct: 62  PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 26/80 (32%)

Query: 150 EALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSH 209
               P                 + P AAPAA    APAPA PA++ P     P A  ++ 
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 210 PPLKCPMAGTFYRCPAPGEP 229
                P A      PA    
Sbjct: 94  AAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 14/75 (18%), Positives = 19/75 (25%)

Query: 162 PPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFY 221
            P             A  A+   +   A+   S P      P+   + PP   P A    
Sbjct: 145 GPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASP 204

Query: 222 RCPAPGEPAFVKVGD 236
           R P    P       
Sbjct: 205 RPPRRSSPISASASS 219

Length = 1352

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV 285
            K GDKV  G V+  IE  K   E EA + G +A+IL  +G K V V+ P+ V+V
Sbjct: 21  KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 24/116 (20%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGE-- 228
              P AA AAAP  APA A+    V VP +                 G         E  
Sbjct: 185 AAAPAAAEAAAPAAAPAAAAGVKDVNVPDI----------------GGD------EVEVT 222

Query: 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
              VKVGDKV+  Q +  +E  K   E+ A  +GT+ EI    G  V   + ++  
Sbjct: 223 EVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRF 278

Length = 633

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 175 PAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPP 211
             A   A  PA AP + A++ P PA  P A  S+   
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA 416

Length = 618

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            VK GD V++ Q +  +E  K   EI +  +G + EI  + G +VSV   L VI
Sbjct: 22  LVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVI 75

Length = 547

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 19/45 (42%), Positives = 21/45 (46%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCP 215
             P  AAPAAA   APAPA  A++ P  A P  A      P   P
Sbjct: 203 AAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASP 247

Length = 547

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 17/60 (28%), Positives = 20/60 (33%)

Query: 171 PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPA 230
             P PAA A A   APAPA+     P PA  P     +                   +PA
Sbjct: 408 AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPA 467

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 12/57 (21%), Positives = 18/57 (31%)

Query: 162 PPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAG 218
            P  P    P     A    P  A A A+  ++ P  A       ++      P+ G
Sbjct: 66  APAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRG 122

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 162 PPTMPHMMYPTP-PPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMA 217
            P  P    P   P A  AAAP PA APA+ AS+   P    P    + P    P A
Sbjct: 380 TPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAA 436

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 18/69 (26%), Positives = 22/69 (31%)

Query: 162 PPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFY 221
               P      P  A   AA  PA A A   ++ P PA  P    +   P     AG   
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

Query: 222 RCPAPGEPA 230
             P    P+
Sbjct: 455 SPPPAAAPS 463

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 171  PTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCP 215
            P+P   A   A   APA A P ++ P   LPPP       P   P
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

Length = 3151

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 175 PAAPAAAPTPAPAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKV 234
             A  AAP  A      A +    A    A K  H P                    VKV
Sbjct: 78  DGAADAAPAQAEEKKEAAPAAAPAA---AAAKDVHVPDIGSDEVEVTE-------ILVKV 127

Query: 235 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           GD V+  Q +  +E  K   E+ A  +GT+ EI    G  VS  + ++V 
Sbjct: 128 GDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVF 177

Length = 633

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	100.0
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.98
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.97
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.95
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.7
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.7
PRK07051	80	hypothetical protein; Validated	99.68
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.66
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.66
PRK06748	83	hypothetical protein; Validated	99.65
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.61
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.53
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.43
PRK09282	592	pyruvate carboxylase subunit B; Validated	99.35
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.35
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.34
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.34
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.33
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.32
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	99.31
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.3
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.3
PRK12999	1146	pyruvate carboxylase; Reviewed	99.27
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.27
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.22
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.21
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.19
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.12
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.07
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.07
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.04
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.99
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.96
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	98.96
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.93
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	98.89
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.89
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	98.87
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	98.81
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	98.81
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	98.81
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	98.81
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.79
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	98.75
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	98.71
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	98.69
PRK01202	127	glycine cleavage system protein H; Provisional	98.38
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	98.32
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.31
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	98.2
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.15
PRK09783	409	copper/silver efflux system membrane fusion protei	98.14
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	98.03
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.0
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	98.0
PRK10476	346	multidrug resistance protein MdtN; Provisional	98.0
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.93
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.88
PRK00624	114	glycine cleavage system protein H; Provisional	97.87
PRK13380	144	glycine cleavage system protein H; Provisional	97.87
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.85
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.79
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.79
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.64
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.64
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.63
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.57
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	97.51
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.5
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.47
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.44
PRK12784	84	hypothetical protein; Provisional	97.41
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	97.38
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	97.33
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.25
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	97.22
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	97.12
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	97.07
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.01
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.94
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.88
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.85
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	96.85
PRK06748	83	hypothetical protein; Validated	96.66
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.61
COG3608	331	Predicted deacylase [General function prediction o	96.51
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	96.35
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.79
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	95.77
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.66
PRK10476	346	multidrug resistance protein MdtN; Provisional	95.61
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	95.5
PRK07051	80	hypothetical protein; Validated	95.38
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	95.32
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	95.27
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.15
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	95.13
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	94.99
PRK09859	385	multidrug efflux system protein MdtE; Provisional	94.96
PRK11578	370	macrolide transporter subunit MacA; Provisional	94.95
PRK15136	390	multidrug efflux system protein EmrA; Provisional	94.92
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	94.91
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.9
PF13437	105	HlyD_3: HlyD family secretion protein	94.88
PRK09439	169	PTS system glucose-specific transporter subunit; P	94.81
PRK03598	331	putative efflux pump membrane fusion protein; Prov	94.66
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	94.53
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	94.4
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	94.36
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	94.32
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	94.19
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	94.06
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	94.01
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	93.81
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	93.58
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.35
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	93.34
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.29
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	93.11
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	92.77
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	92.51
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	92.0
PRK09783	409	copper/silver efflux system membrane fusion protei	91.99
PRK09439	169	PTS system glucose-specific transporter subunit; P	91.87
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	91.78
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	91.62
PRK05035	695	electron transport complex protein RnfC; Provision	91.54
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	91.51
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	91.33
COG2190	156	NagE Phosphotransferase system IIA components [Car	91.03
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	90.97
PRK09824	627	PTS system beta-glucoside-specific transporter sub	90.94
PRK05305	206	phosphatidylserine decarboxylase; Provisional	90.75
PRK14042	596	pyruvate carboxylase subunit B; Provisional	90.73
PRK10255	648	PTS system N-acetyl glucosamine specific transport	90.7
PRK09824	627	PTS system beta-glucoside-specific transporter sub	90.5
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	90.46
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	90.36
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	90.26
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	89.99
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	89.85
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	89.42
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	89.08
PRK14040	593	oxaloacetate decarboxylase; Provisional	89.05
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	88.68
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	88.52
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	88.52
PRK10255	648	PTS system N-acetyl glucosamine specific transport	88.3
PRK09282	592	pyruvate carboxylase subunit B; Validated	88.11
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	87.53
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	87.5
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	87.23
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	87.11
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	86.82
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	85.97
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	85.61
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	85.41
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	85.16
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	84.87
COG2190	156	NagE Phosphotransferase system IIA components [Car	83.34
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	81.91
PRK12999	1146	pyruvate carboxylase; Reviewed	81.83
PF06898	385	YqfD: Putative stage IV sporulation protein YqfD;	81.82
TIGR02876	382	spore_yqfD sporulation protein YqfD. YqfD is part	81.74
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	81.46
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	81.33
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	80.96

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=100.00  E-value=9.1e-53  Score=386.88  Aligned_cols=263  Identities=64%  Similarity=0.924  Sum_probs=208.4

Q ss_pred             CCcccccCCCcccc-cccCCCCCCCchhhhhhhhhccCCCCCCCccccCCCCCCcceeeecccceeeEEEeeeeeeeecC
Q 023188            1 MASIWIPCPKISWV-APVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAKK   79 (286)
Q Consensus         1 mas~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (286)
                      |||||+||+||.+. +..|....        ..+||+  .+||+|+|.++.       ++++|..+|+||||+|||.+++
T Consensus         1 mas~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~f~~~~-------~~~~~~~~~~~~a~~ne~~~~~   63 (274)
T PLN02983          1 MASLSVPCAKTAAAAANVGSRLS--------RSSFRL--QPKPNISFPSKG-------PNPKRSAVPKVKAQLNEVAVDG   63 (274)
T ss_pred             CCccccCcccceeeccccccccc--------cccccc--CCCCCcccccCC-------CCcccceeeeEEeeeceeeecc
Confidence            99999999999987 33552222        234555  789999999973       6899999999999999999999


Q ss_pred             CCCCcccccCCCcccCchhhhccc-----cCCCCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCC
Q 023188           80 PLNSTAAVDTGSEVASSEEKVESA-----EKKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQP  154 (286)
Q Consensus        80 ~~n~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~  154 (286)
                      |||++++..+++.++.++++++.+     +++++|+++|+.||.|+.+|+|++|++||.||+||+.||+|.|||++.+++
T Consensus        64 ~sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv~lv~~~di~e~~lk~~~~e~~irkkeal~~  143 (274)
T PLN02983         64 SSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQLKQLDCELVIRKKEALPQ  143 (274)
T ss_pred             ccccccccCCcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHHhhhccccceeeeccccceEEEEecccccCC
Confidence            999999999999999999888773     589999999999999999999999999999999999999999999998865


Q ss_pred             Ccc---ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCccCCcceEEEccCCCCCC
Q 023188          155 PEC---IVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAK--KSSHPPLKCPMAGTFYRCPAPGEP  229 (286)
Q Consensus       155 ~~~---~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~~~~~a~~~~~~--~~~~~~I~AP~~G~~~~~p~~~~~  229 (286)
                      +++   +..++.+.++...|..   ++++.. +.+.++..++  ++++.+.+++  .+++..|+|||.|+||+.|.+++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~p~~---~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~s~~~~V~APmaGtf~r~p~pge~  217 (274)
T PLN02983        144 PPPPAPVVMMQPPPPHAMPPAS---PPAAQP-APSAPASSPP--PTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEP  217 (274)
T ss_pred             CCCCCceEEecCCCcccCCCCC---CcccCC-CCCCCCCCCC--CCCCCCCCCCCCcCCCCeEeCCcCeEEEeccCCCCc
Confidence            431   2223222222222211   111011 0001111111  1111121222  267789999999999999999999


Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |+|++||.|++||+||+||+||++++|+|+.+|+|++|++++|+.|.+|++|++|+|
T Consensus       218 w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP  274 (274)
T PLN02983        218 PFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP  274 (274)
T ss_pred             ceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999987

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.98  E-value=2.4e-31  Score=229.43  Aligned_cols=156  Identities=44%  Similarity=0.736  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023188          115 AFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASS  194 (286)
Q Consensus       115 ~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~  194 (286)
                      |++++|++||++|++++|+||+|+.+|++|+|+|........ .  .++    .+.+... +.+....  +..++. .  
T Consensus         1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~~-~--~~~----~~~~~~~-~~~~~~~--~~~~~~-~--   67 (156)
T TIGR00531         1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKS-A--VQQ----AAAPVPA-QVPAAPS--AQAPAP-A--   67 (156)
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCccc-c--ccc----cCCCccc-cCCCCCC--CCCCCC-C--
Confidence            678999999999999999999999999999999964211000 0  000    0000000 0000000  000000 0  


Q ss_pred             CCCCCCCCCCCCCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023188          195 VPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS  274 (286)
Q Consensus       195 ~~~~a~~~~~~~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~  274 (286)
                      ...+. + .....+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+|||+++|+|+++|+|++|++++|+.
T Consensus        68 ~~~~~-~-~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~  145 (156)
T TIGR00531        68 VCAPA-P-AKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP  145 (156)
T ss_pred             CCCCC-c-ccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE
Confidence            00000 0 111123457999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEc
Q 023188          275 VSVDTPLLVIV  285 (286)
Q Consensus       275 V~~G~~L~~Ie  285 (286)
                      |+||++||+|+
T Consensus       146 V~~Gq~L~~i~  156 (156)
T TIGR00531       146 VEYGQPLIVIE  156 (156)
T ss_pred             ECCCCEEEEEC
Confidence            99999999985

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.97  E-value=9e-31  Score=225.58  Aligned_cols=155  Identities=41%  Similarity=0.693  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023188          115 AFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASS  194 (286)
Q Consensus       115 ~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~  194 (286)
                      |++++|++||++|++++|+||+|+.+|++|+|+|.......+ +. ...    ...+...  .+.+..    +... ++ 
T Consensus         1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~-~~-~~~----~~~p~~~--~~~~~~----~~~~-~~-   66 (155)
T PRK06302          1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAP-VA-QQA----AAAPVAA--APAAAA----AAAA-AP-   66 (155)
T ss_pred             CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCccc-cc-ccc----ccCCCCC--CCCCCC----cccc-CC-
Confidence            678999999999999999999999999999998864211000 00 000    0000000  000000    0000 00 


Q ss_pred             CCCCCCCCCCCCCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023188          195 VPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS  274 (286)
Q Consensus       195 ~~~~a~~~~~~~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~  274 (286)
                      .+.+..  +....+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|++|++++|+.
T Consensus        67 ~~~~~~--~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~  144 (155)
T PRK06302         67 AAAPAA--AAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP  144 (155)
T ss_pred             CCCCCC--CccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE
Confidence            000000  111123458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEc
Q 023188          275 VSVDTPLLVIV  285 (286)
Q Consensus       275 V~~G~~L~~Ie  285 (286)
                      |+||++||+|+
T Consensus       145 V~~Gq~L~~i~  155 (155)
T PRK06302        145 VEFGQPLFVIE  155 (155)
T ss_pred             eCCCCEEEEeC
Confidence            99999999985

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.95  E-value=2.5e-27  Score=201.05  Aligned_cols=140  Identities=39%  Similarity=0.618  Sum_probs=101.0

Q ss_pred             HHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023188          120 VSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPA  199 (286)
Q Consensus       120 I~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~~~~~a  199 (286)
                      |++|+++++++++.+++++.+++++++++....... .......  . ...     +.....     .++..   ...+.
T Consensus         1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~-----~~~~~~-----~~~~~---~~~~~   63 (140)
T COG0511           1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQD-VPAPAPI--E-ASS-----PSAAAA-----QPAAS---APAPA   63 (140)
T ss_pred             CcchhhheeeeCcEEEEEEeCCcEEEEeeccccccc-ccccccc--c-ccc-----cccccc-----Ccccc---cccCC
Confidence            468999999999999999999999999887511000 0000000  0 000     000000     00000   00000


Q ss_pred             CCCCCCCCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCC
Q 023188          200 LPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDT  279 (286)
Q Consensus       200 ~~~~~~~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~  279 (286)
                         +....+...|+|||+|+||+       .||++||+|++||+||+||+|||+|+|.|+.+|+|++|++++||.|++||
T Consensus        64 ---~~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~  133 (140)
T COG0511          64 ---PAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGD  133 (140)
T ss_pred             ---ccccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCC
Confidence               11111456899999999999       89999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcC
Q 023188          280 PLLVIVP  286 (286)
Q Consensus       280 ~L~~Iep  286 (286)
                      +|++|++
T Consensus       134 ~L~~I~~  140 (140)
T COG0511         134 PLAVIEP  140 (140)
T ss_pred             EEEEecC
Confidence            9999985

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.70  E-value=8.6e-18  Score=127.69  Aligned_cols=73  Identities=41%  Similarity=0.554  Sum_probs=68.1

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .|++|+.|.+++.. ....|+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+.|.+|++|++|
T Consensus         2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            58999999988754 55669999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.70  E-value=6.6e-17  Score=121.66  Aligned_cols=68  Identities=21%  Similarity=0.429  Sum_probs=66.2

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|+||+.|++++       |+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|..|++|++|.
T Consensus         4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            599999999999       99999999999999999999999999999999999999999999999999999884

>PRK07051 hypothetical protein; Validated

Probab=99.68  E-value=2.1e-16  Score=121.91  Aligned_cols=76  Identities=43%  Similarity=0.766  Sum_probs=73.5

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||+.|+||+++.+..+++|++||.|++||.|+.||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus         4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051          4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999985

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.66  E-value=7.7e-16  Score=129.82  Aligned_cols=72  Identities=36%  Similarity=0.555  Sum_probs=68.7

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+...|+||+.|++++       |+|++||.|++||.|++||+|||.++|.|+.+|+|.+|+++.||.|..|++|++|.
T Consensus        59 ~~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  130 (130)
T PRK06549         59 AGADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG  130 (130)
T ss_pred             CCCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence            3566899999999999       99999999999999999999999999999999999999999999999999999873

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.66  E-value=3.4e-16  Score=117.07  Aligned_cols=68  Identities=38%  Similarity=0.568  Sum_probs=66.4

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|+||++|+|++       |++++||+|++||+|+.||+||+..+|.++.+|+|.++++++|+.|..|++|++|+
T Consensus         3 ~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          3 KVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             eEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            689999999999       99999999999999999999999999999999999999999999999999999986

>PRK06748 hypothetical protein; Validated

Probab=99.65  E-value=5.7e-16  Score=121.44  Aligned_cols=69  Identities=22%  Similarity=0.297  Sum_probs=66.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe-cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA-MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa-mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|||.|++.+       |+|++||.|++||+|++||+ +|.+.+|+||.+|+|.+|++++|+.|..|++|+.|+
T Consensus         5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~   74 (83)
T PRK06748          5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR   74 (83)
T ss_pred             eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            4699999999999       99999999999999999999 678899999999999999999999999999999986

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.61  E-value=3.7e-15  Score=128.75  Aligned_cols=70  Identities=36%  Similarity=0.644  Sum_probs=67.7

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      +...|+||+.|++++       |+|++||.|++||.|++||+|||.++|.|+.+|+|.++++++|+.|..|++|++|
T Consensus        83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            456799999999999       9999999999999999999999999999999999999999999999999999987

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.53  E-value=4.3e-14  Score=102.10  Aligned_cols=67  Identities=42%  Similarity=0.694  Sum_probs=64.7

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .|+||+.|+|.+       |+++.||.|++||.|+.|+++|+..+|+|+.+|+|..+++++|+.|..|++|+.|
T Consensus         1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            479999999998       9999999999999999999999999999999999999999999999999999975

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.43  E-value=3.6e-13  Score=137.55  Aligned_cols=71  Identities=34%  Similarity=0.545  Sum_probs=68.0

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +...|+|||+|++++       |+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus       524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~  594 (596)
T PRK14042        524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE  594 (596)
T ss_pred             CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence            334799999999999       99999999999999999999999999999999999999999999999999999986

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=99.35  E-value=1.9e-12  Score=132.31  Aligned_cols=73  Identities=42%  Similarity=0.637  Sum_probs=69.9

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .....|+||+.|+|++       |+|++||.|++||+|++||+|||.++|+|+.+|+|+++++++|+.|+.|++|++|+|
T Consensus       520 ~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~  592 (592)
T PRK09282        520 SAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP  592 (592)
T ss_pred             CCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence            3446899999999999       899999999999999999999999999999999999999999999999999999987

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.35  E-value=2.1e-12  Score=120.01  Aligned_cols=64  Identities=31%  Similarity=0.491  Sum_probs=61.2

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|++.+       |+|++||.|++||+|++||+||+.++|+||.+|+|+++++++|+.|..|++|+.|++
T Consensus        15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~   78 (371)
T PRK14875         15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD   78 (371)
T ss_pred             ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence            4689999       999999999999999999999999999999999999999999999999999999863

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.34  E-value=5.6e-12  Score=94.13  Aligned_cols=61  Identities=48%  Similarity=0.724  Sum_probs=58.7

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .|++++       |++++||.|++||.|+.||+||+..+|+||.+|+|++++++.|+.|..|+.|++|
T Consensus        13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            588888       9999999999999999999999999999999999999999999999999999975

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.34  E-value=1.8e-12  Score=132.26  Aligned_cols=67  Identities=40%  Similarity=0.647  Sum_probs=64.3

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeE
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPL  281 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L  281 (286)
                      +...|+|||+|++++       |+|++||.|++||+|++||+|||+++|.|+.+|+|.+|++++|+.|..|++|
T Consensus       516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            445799999999999       9999999999999999999999999999999999999999999999999976

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.33  E-value=3.3e-12  Score=130.58  Aligned_cols=70  Identities=37%  Similarity=0.681  Sum_probs=67.4

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|+|||.|+|++       |+|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|..|++|++|.
T Consensus       524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            45799999999999       99999999999999999999999999999999999999999999999999999873

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.32  E-value=3.1e-12  Score=127.25  Aligned_cols=62  Identities=31%  Similarity=0.469  Sum_probs=59.9

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|++++       |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++||.|..|++|++|+
T Consensus       105 eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~  166 (463)
T PLN02226        105 DGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS  166 (463)
T ss_pred             eEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence            577888       99999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=99.31  E-value=4.4e-12  Score=127.64  Aligned_cols=72  Identities=33%  Similarity=0.533  Sum_probs=68.8

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ....+.|||+|++..       ..|++|+.|.+||+|+++|+|||++.|+|+.+|+|+++.++.|+.|..|++|++|++
T Consensus       574 ~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~  645 (645)
T COG4770         574 SSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE  645 (645)
T ss_pred             CCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence            445799999999999       899999999999999999999999999999999999999999999999999999975

>TIGR02712 urea_carbox urea carboxylase

Probab=99.30  E-value=4.8e-12  Score=138.01  Aligned_cols=72  Identities=31%  Similarity=0.552  Sum_probs=69.2

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+...|.|||.|++++       |+|++||.|++||+|++||+|||.++|.|+.+|+|++|++++|+.|..|++|+.|+
T Consensus      1130 ~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1130 EGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             CCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            4567899999999999       99999999999999999999999999999999999999999999999999999985

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.30  E-value=5.3e-12  Score=136.99  Aligned_cols=72  Identities=32%  Similarity=0.547  Sum_probs=68.7

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+...|.|||.|++++       |+|++||.|++||+|++||+|||.++|.|+.+|+|++|++++|+.|+.|++|++|+
T Consensus      1072 ~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1072 GNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             ccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            3455799999999999       99999999999999999999999999999999999999999999999999999985

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=99.27  E-value=9.1e-12  Score=135.32  Aligned_cols=72  Identities=32%  Similarity=0.543  Sum_probs=69.1

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      +...|.|||.|++++       ++|++||.|++||+|++||+|||.++|.||.+|+|++|++++|+.|+.|++|+.|++
T Consensus      1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999       1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred             CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence            445799999999999       999999999999999999999999999999999999999999999999999999985

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.27  E-value=1.1e-11  Score=122.25  Aligned_cols=62  Identities=44%  Similarity=0.619  Sum_probs=60.0

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|++++       |+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus        58 eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~  119 (418)
T PTZ00144         58 EGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID  119 (418)
T ss_pred             eEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence            578888       99999999999999999999999999999999999999999999999999999986

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.22  E-value=2.1e-11  Score=119.57  Aligned_cols=62  Identities=37%  Similarity=0.541  Sum_probs=59.8

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||+|++||+|++||++|..+||.|+++|+|.+|++++|+.|..|++|++|+
T Consensus        16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~   77 (404)
T COG0508          16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE   77 (404)
T ss_pred             eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence            478888       99999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.21  E-value=1.5e-11  Score=127.57  Aligned_cols=72  Identities=38%  Similarity=0.581  Sum_probs=69.0

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+..+|-|||+|++..       .+|+.||+|++||+|++||+|||+..|.||.+|+|.+++|.+|+.|+.|++|+.++
T Consensus      1077 ~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1077 GNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             CCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            5667899999999999       89999999999999999999999999999999999999999999999999999875

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.19  E-value=4.3e-11  Score=117.51  Aligned_cols=62  Identities=35%  Similarity=0.446  Sum_probs=60.3

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++++       |+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus        16 eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~   77 (407)
T PRK05704         16 EATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID   77 (407)
T ss_pred             eEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            489999       99999999999999999999999999999999999999999999999999999986

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.12  E-value=1.5e-10  Score=113.72  Aligned_cols=62  Identities=29%  Similarity=0.442  Sum_probs=60.1

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++++       |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus        14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~   75 (403)
T TIGR01347        14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE   75 (403)
T ss_pred             eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            488998       99999999999999999999999999999999999999999999999999999986

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.07  E-value=2.5e-10  Score=116.84  Aligned_cols=62  Identities=32%  Similarity=0.425  Sum_probs=59.3

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++++       |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus       149 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~  210 (590)
T TIGR02927       149 EGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG  210 (590)
T ss_pred             eEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            466777       99999999999999999999999999999999999999999999999999999985

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.07  E-value=2.4e-10  Score=117.67  Aligned_cols=62  Identities=29%  Similarity=0.347  Sum_probs=58.8

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|+.|+
T Consensus       218 eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~  279 (633)
T PRK11854        218 EVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE  279 (633)
T ss_pred             ceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            456666       99999999999999999999999999999999999999999999999999999985

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.04  E-value=4.8e-10  Score=115.46  Aligned_cols=62  Identities=27%  Similarity=0.377  Sum_probs=59.5

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++|+.|..|++|++|+
T Consensus        14 eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~   75 (633)
T PRK11854         14 EVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE   75 (633)
T ss_pred             eEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence            467777       99999999999999999999999999999999999999999999999999999986

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.99  E-value=7.7e-10  Score=112.27  Aligned_cols=74  Identities=26%  Similarity=0.336  Sum_probs=63.4

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+-|..|. .. ......|+|++||.|++||.||+||+||+.++|+|+++|+|.+|+++.|+.|..|++|++|.
T Consensus       117 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~  190 (546)
T TIGR01348       117 QEVTVPDIGD-IE-KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS  190 (546)
T ss_pred             eEEeCCCCCC-cc-eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence            4666666664 21 12223399999999999999999999999999999999999999999999999999999985

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.96  E-value=1.2e-09  Score=112.08  Aligned_cols=73  Identities=27%  Similarity=0.407  Sum_probs=69.3

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .....|.|||+|++..       ..|++|++|++||.||++.+|||++-|.||.+|+|+++++.+|+.|+.|+.+++||+
T Consensus      1104 ~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1104 GVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred             CCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence            3456899999999999       799999999999999999999999999999999999999999999999999999985

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=98.96  E-value=1.7e-09  Score=106.51  Aligned_cols=61  Identities=34%  Similarity=0.452  Sum_probs=59.2

Q ss_pred             eEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          218 GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       218 G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      |++.+       |+|++||.|++||.||+||+||+.+++.++++|+|.++++++|+.|..|++|++|+
T Consensus        13 g~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~   73 (416)
T PLN02528         13 CELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM   73 (416)
T ss_pred             EEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            78888       99999999999999999999999999999999999999999999999999999885

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.93  E-value=1.9e-09  Score=109.26  Aligned_cols=74  Identities=32%  Similarity=0.377  Sum_probs=62.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+-|..|. +. ......|+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|.
T Consensus       120 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~  193 (547)
T PRK11855        120 VEVKVPDIGE-IT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE  193 (547)
T ss_pred             eEEecCCCCC-cc-eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence            3566665554 32 12223399999999999999999999999999999999999999999999999999999985

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=98.89  E-value=7.5e-10  Score=106.83  Aligned_cols=57  Identities=37%  Similarity=0.522  Sum_probs=56.0

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |+.++||.|++++.||.||++|...+|.||.+|+|++++|++||.|+.|+.|+.|+|
T Consensus        92 ~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~  148 (457)
T KOG0559|consen   92 WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP  148 (457)
T ss_pred             HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence            999999999999999999999999999999999999999999999999999999975

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.89  E-value=1.1e-08  Score=72.55  Aligned_cols=64  Identities=38%  Similarity=0.546  Sum_probs=60.6

Q ss_pred             CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ++..|++.+       |++..|+.|..|+.++.++++|+...+.++.+|+|.+..+.+|+.|..|++|++|
T Consensus        11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            456789988       9999999999999999999999999999999999999999999999999999975

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.87  E-value=5.3e-09  Score=106.24  Aligned_cols=64  Identities=28%  Similarity=0.402  Sum_probs=61.4

Q ss_pred             CcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          215 PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       215 P~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +..|++++       |+|++||.|++||+||+||+||+.++|.++.+|+|.+++++.|+.|..|++|++|+
T Consensus        11 ~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~   74 (546)
T TIGR01348        11 NEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE   74 (546)
T ss_pred             CCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence            36789999       99999999999999999999999999999999999999999999999999999885

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=98.81  E-value=1e-08  Score=103.99  Aligned_cols=62  Identities=32%  Similarity=0.362  Sum_probs=59.8

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|++..       |+|++||.|++||+||+||+||+.++|.|+++|+|.++++++|+.|..|++|+.|+
T Consensus        15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~   76 (547)
T PRK11855         15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE   76 (547)
T ss_pred             eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence            478888       99999999999999999999999999999999999999999999999999999886

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=98.81  E-value=8.5e-09  Score=104.68  Aligned_cols=61  Identities=33%  Similarity=0.529  Sum_probs=58.0

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEE
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVI  284 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~I  284 (286)
                      -|++.+       |+|++||.|++||.||+||++|..++|+++.+|+|.+|++++|+ .|..|++|++|
T Consensus       126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i  187 (539)
T PLN02744        126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT  187 (539)
T ss_pred             eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence            377888       99999999999999999999999999999999999999999996 79999999987

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=98.81  E-value=9.2e-09  Score=101.92  Aligned_cols=62  Identities=39%  Similarity=0.584  Sum_probs=59.6

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc-cCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS-VSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~-V~~G~~L~~Ie  285 (286)
                      .|++.+       |+|++||.|+.||.||.||+||+.++|.|+.+|+|.+|+++.|+. |..|++|++|+
T Consensus        13 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~   75 (435)
T TIGR01349        13 TGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV   75 (435)
T ss_pred             eEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence            578888       999999999999999999999999999999999999999999999 99999999984

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=98.81  E-value=1.3e-08  Score=99.62  Aligned_cols=63  Identities=37%  Similarity=0.525  Sum_probs=60.2

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|++.+       |+|++||.|++||.||.||+||+.++|.|+.+|+|.++++++|+.|..|++|++|.
T Consensus        15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~   77 (411)
T PRK11856         15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE   77 (411)
T ss_pred             ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence            3588888       99999999999999999999999999999999999999999999999999999885

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.79  E-value=4.5e-09  Score=105.28  Aligned_cols=69  Identities=29%  Similarity=0.493  Sum_probs=66.4

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..+.+||+|.+.+       .+|+.||+|.+||.|+++++|||.+-++|+.+|+|+.+.++.|+.|..|.+|++++
T Consensus       602 ~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  602 GVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            4699999999998       89999999999999999999999999999999999999999999999999999874

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=98.75  E-value=1.1e-08  Score=101.26  Aligned_cols=62  Identities=37%  Similarity=0.558  Sum_probs=59.1

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCC-CccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~G-d~V~~G~~L~~Ie  285 (286)
                      -|.+.+       |..++||++.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|+.|.
T Consensus        52 eGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   52 EGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            488888       9999999999999999999999999999999999999999999 8899999999874

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=98.71  E-value=2.9e-08  Score=99.26  Aligned_cols=62  Identities=40%  Similarity=0.624  Sum_probs=58.8

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||.|++||.|+.||++|+.++|.|+.+|+|.+|+++.|+ .|..|++|++|+
T Consensus        16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~   78 (464)
T PRK11892         16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL   78 (464)
T ss_pred             eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence            377888       99999999999999999999999999999999999999999995 799999999985

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=98.69  E-value=3.2e-08  Score=101.46  Aligned_cols=63  Identities=25%  Similarity=0.340  Sum_probs=59.6

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|++++       |+|++||.|+.||.||+||+||+.++|.|+.+|+|.+++++.|+.|..|+.|++|+
T Consensus        15 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~   77 (590)
T TIGR02927        15 TEGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG   77 (590)
T ss_pred             cEEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence            3577888       99999999999999999999999999999999999999999999999999999874

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK01202 glycine cleavage system protein H; Provisional

Probab=98.38  E-value=8e-07  Score=74.62  Aligned_cols=56  Identities=30%  Similarity=0.494  Sum_probs=50.3

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEE---EcCCCCccC---CCC-eEEEEcC
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSVS---VDT-PLLVIVP  286 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I---lve~Gd~V~---~G~-~L~~Iep  286 (286)
                      +.++|++|++||.++.||++|...+|.||.+|+|+++   +.++.+.|.   ||+ -|++|++
T Consensus        44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~  106 (127)
T PRK01202         44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP  106 (127)
T ss_pred             cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence            4469999999999999999999999999999999999   777888888   876 8988864

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=98.32  E-value=7.6e-07  Score=97.53  Aligned_cols=72  Identities=24%  Similarity=0.480  Sum_probs=67.1

Q ss_pred             CCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          206 KSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       206 ~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +.+...+++|.+|++.+       |.|+.|+.|.+||.-++||.|||.+++.+..+|+| ....++|+.++.|++|+.+.
T Consensus       682 enDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~  753 (2196)
T KOG0368|consen  682 ENDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLT  753 (2196)
T ss_pred             CCCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEee
Confidence            34567899999999999       99999999999999999999999999999999988 77889999999999999874

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.31  E-value=1.1e-06  Score=69.77  Aligned_cols=56  Identities=20%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             cCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023188          213 KCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS  274 (286)
Q Consensus       213 ~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~  274 (286)
                      ...+.|.++..      ++.++|+.|++||.|+.||++|+..+|.||.+|+|+++..+-++.
T Consensus        24 ~~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          24 AQDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             HHhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            34467887775      788889999999999999999999999999999999998776654

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=98.20  E-value=5.9e-07  Score=86.84  Aligned_cols=57  Identities=25%  Similarity=0.364  Sum_probs=55.2

Q ss_pred             CccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       229 ~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +|||++||+|+.-|.||+++.+|...+|.+.++|+|++|+.+.++...+|++|+.++
T Consensus        83 eWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e  139 (474)
T KOG0558|consen   83 EWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE  139 (474)
T ss_pred             eehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence            499999999999999999999999999999999999999999999999999999875

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.15  E-value=4.7e-06  Score=78.07  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.7

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|+||.+|+|..+.++.|+.|..|++|+.|.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~  237 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP  237 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence            479999999999999999999999999999854

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.14  E-value=7.1e-06  Score=80.48  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=60.8

Q ss_pred             CCccCCcceEEEccCCCCCCcc-ccCCCEEecCCeEEEEEec--------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAF-VKVGDKVQKGQVVCIIEAM--------------------------------------  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~-VkvGd~V~~Gq~L~~IEam--------------------------------------  250 (286)
                      ..|.+++.|.+.+       .+ +++||.|++||+|+.|+.-                                      
T Consensus       124 ~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~  196 (409)
T PRK09783        124 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD  196 (409)
T ss_pred             EEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHH
Confidence            4699999999988       67 8999999999999999831                                      


Q ss_pred             ----------CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          251 ----------KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       251 ----------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                .....|+||.+|+|.+..++.|+.|..|++||+|.
T Consensus       197 i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~  241 (409)
T PRK09783        197 IRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  241 (409)
T ss_pred             HHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence                      11347999999999999999999999999999984

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=98.03  E-value=6.9e-06  Score=75.60  Aligned_cols=69  Identities=35%  Similarity=0.457  Sum_probs=61.0

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe-------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL-------------------------------------  252 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~-------------------------------------  252 (286)
                      ..|.+|..|++..       ++|++||.|++||+|+.|+....                                     
T Consensus        27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~   99 (322)
T TIGR01730        27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV   99 (322)
T ss_pred             EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            4799999999998       89999999999999999965211                                     


Q ss_pred             ----------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 ----------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ----------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                                        ...|+||.+|+|..+.++.|+.|..|++|+.|.
T Consensus       100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~  166 (322)
T TIGR01730       100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV  166 (322)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence                                              236999999999999999999999999999874

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.00  E-value=9.9e-06  Score=66.75  Aligned_cols=39  Identities=28%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      +-++|+.|++||.++.||++|+..+|.||.+|+|++++-
T Consensus        37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~   75 (110)
T TIGR03077        37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNI   75 (110)
T ss_pred             CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence            458899999999999999999999999999999999953

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=98.00  E-value=2.1e-05  Score=73.42  Aligned_cols=65  Identities=23%  Similarity=0.348  Sum_probs=58.7

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|+||..|.|..        +++.||.|++||+|+.|..    .+|+||.+|+|. =++.+|-.|..|.-|..|.|
T Consensus       164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP  228 (256)
T TIGR03309       164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP  228 (256)
T ss_pred             eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence            45799999999986        8999999999999999975    799999999885 55689999999999999976

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=98.00  E-value=1.3e-05  Score=76.28  Aligned_cols=34  Identities=12%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|+||++|+|.++.++.|+.|..|++|+.|.+
T Consensus       208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~  241 (346)
T PRK10476        208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLID  241 (346)
T ss_pred             cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEec
Confidence            3479999999999999999999999999998853

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.93  E-value=1.1e-05  Score=67.75  Aligned_cols=48  Identities=31%  Similarity=0.437  Sum_probs=40.5

Q ss_pred             CCCCCCccc---cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCC
Q 023188          224 PAPGEPAFV---KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED  271 (286)
Q Consensus       224 p~~~~~~~V---kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~  271 (286)
                      ...|.-.||   ++|++|++||.+|.||+||+..+|.||.+|+|+++.-.-
T Consensus        33 ~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l   83 (127)
T TIGR00527        33 DELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDAL   83 (127)
T ss_pred             hCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhh
Confidence            334444556   599999999999999999999999999999999987543

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.88  E-value=2.6e-05  Score=73.77  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=61.0

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK--------------------------------------  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK--------------------------------------  251 (286)
                      ..|.++..|++.+       ++|++||.|++||+|+.|+...                                      
T Consensus        48 v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS  120 (310)
T PRK10559         48 VAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMS  120 (310)
T ss_pred             EEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            4688999999999       8999999999999999998721                                      


Q ss_pred             --------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          252 --------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       252 --------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                                      -...|+||.+|+|.++.++.|+.|..|++|+.|-
T Consensus       121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv  186 (310)
T PRK10559        121 REEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV  186 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence                                            0258999999999999999999999999999763

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.87  E-value=2.7e-05  Score=64.57  Aligned_cols=38  Identities=29%  Similarity=0.430  Sum_probs=35.8

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL  268 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il  268 (286)
                      +-++|+.|++||.||.||++|...+|.||.+|+|.++.
T Consensus        39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            45889999999999999999999999999999999993

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.87  E-value=1.9e-05  Score=67.83  Aligned_cols=57  Identities=25%  Similarity=0.327  Sum_probs=46.7

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK  273 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd  273 (286)
                      .....+.|.++..      .+-++|+.|++||.++.||+||+..+|.||.+|+|+++..+-.+
T Consensus        37 d~aq~~lG~I~~v------~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~   93 (144)
T PRK13380         37 DYAQTMAGDVVFV------RLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED   93 (144)
T ss_pred             HHHHHhcCCEEEE------EcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence            4555677877652      23358999999999999999999999999999999998866433

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.85  E-value=2.8e-05  Score=73.39  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~  235 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS  235 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence            48999999999999999999999999999874

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.79  E-value=3.8e-05  Score=74.88  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||.+|+|..+.++.|+.|..|++|+.|-
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv  247 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV  247 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence            47999999999999999999999999999875

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.79  E-value=3.9e-05  Score=74.13  Aligned_cols=69  Identities=23%  Similarity=0.345  Sum_probs=59.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK--------------------------------------  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK--------------------------------------  251 (286)
                      ..|.+++.|++..       .+|++||.|++||+|+.|+...                                      
T Consensus        64 ~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~i  136 (385)
T PRK09578         64 AEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAV  136 (385)
T ss_pred             EEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4799999999988       7999999999999999997631                                      


Q ss_pred             ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023188          252 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV  285 (286)
Q Consensus       252 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~~L~~Ie  285 (286)
                                                       -...|+||++|+|.+.+++.|+.|..|  ++|+.|.
T Consensus       137 S~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~  205 (385)
T PRK09578        137 SERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE  205 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence                                             124899999999999999999999885  5888763

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.64  E-value=9.3e-05  Score=72.04  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=59.4

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-------------------------------------
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------  251 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-------------------------------------  251 (286)
                      ...|.+...|++.+       .+|++||.|++||+|+.|+...                                     
T Consensus        65 ~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~  137 (397)
T PRK15030         65 IAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQY  137 (397)
T ss_pred             EEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            34699999999998       7999999999999999997421                                     


Q ss_pred             ----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCCe--EEEE
Q 023188          252 ----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDTP--LLVI  284 (286)
Q Consensus       252 ----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~--L~~I  284 (286)
                                                        -...|+||++|+|.+.+++.|+.|..|++  |+.|
T Consensus       138 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i  206 (397)
T PRK15030        138 ISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV  206 (397)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence                                              12579999999999999999999999985  6765

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.64  E-value=9.9e-05  Score=71.41  Aligned_cols=68  Identities=16%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK--------------------------------------  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK--------------------------------------  251 (286)
                      ..|.++..|++.+       .+|++||.|++||+|+.|+...                                      
T Consensus        62 ~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~i  134 (385)
T PRK09859         62 AEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYV  134 (385)
T ss_pred             EEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4699999999988       7999999999999999997520                                      


Q ss_pred             ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCC--eEEEE
Q 023188          252 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDT--PLLVI  284 (286)
Q Consensus       252 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~--~L~~I  284 (286)
                                                       -...|+||++|+|.+.+++.|+.|..|+  +|+.|
T Consensus       135 s~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i  202 (385)
T PRK09859        135 SRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV  202 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence                                             1258999999999999999999999985  68876

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.63  E-value=0.00011  Score=52.05  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|.++.+|+|.++++++|+.|..|++|++|..
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~   35 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS   35 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence            578999999999999999999999999999863

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.57  E-value=0.00013  Score=69.94  Aligned_cols=69  Identities=23%  Similarity=0.390  Sum_probs=58.8

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-------------------------------------
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------  251 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-------------------------------------  251 (286)
                      ...|.+++.|.+..       ++|++||.|++||+|+.|+...                                     
T Consensus        61 ~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~  133 (370)
T PRK11578         61 KVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQ  133 (370)
T ss_pred             EEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34799999999998       8999999999999999998621                                     


Q ss_pred             ------------------------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC---Ce
Q 023188          252 ------------------------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD---TP  280 (286)
Q Consensus       252 ------------------------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G---~~  280 (286)
                                                                      -...|+||++|+|.++.++.|+.|..|   ++
T Consensus       134 ~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~  213 (370)
T PRK11578        134 RLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPN  213 (370)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCce
Confidence                                                            013799999999999999999999766   46


Q ss_pred             EEEE
Q 023188          281 LLVI  284 (286)
Q Consensus       281 L~~I  284 (286)
                      |+.|
T Consensus       214 l~~i  217 (370)
T PRK11578        214 ILTL  217 (370)
T ss_pred             EEEE
Confidence            8876

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.51  E-value=0.00035  Score=66.12  Aligned_cols=66  Identities=20%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe---cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA---MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa---mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ...|+||..|.|+.        +++.||.|++||+|+.|-.   .....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       229 ~~~v~A~~~Gl~~~--------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i  297 (298)
T cd06253         229 VVYVNAETSGIFVP--------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI  297 (298)
T ss_pred             eEEEEcCCCeEEEE--------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence            45799999999986        7999999999999998865   3457899999999996655  66789999999987

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.50  E-value=9.4e-05  Score=52.35  Aligned_cols=36  Identities=28%  Similarity=0.628  Sum_probs=32.3

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCee
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM  253 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~  253 (286)
                      .|.+|..|++..       ++|++||.|++||+|+.|+.....
T Consensus         4 ~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~~   39 (50)
T PF13533_consen    4 TIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDLQ   39 (50)
T ss_pred             EEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHHH
Confidence            589999999999       899999999999999999876543

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.47  E-value=0.00011  Score=67.86  Aligned_cols=33  Identities=36%  Similarity=0.601  Sum_probs=23.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|.++..|++ .       ++|++||.|++||+|+.|+..
T Consensus        22 ~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~~   54 (328)
T PF12700_consen   22 VSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDSS   54 (328)
T ss_dssp             EEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-H
T ss_pred             EEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEECh
Confidence            46899999999 8       899999999999999999873

...

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.44  E-value=0.0002  Score=70.34  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=59.4

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC------------------------------------
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------  251 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK------------------------------------  251 (286)
                      ....|.+++.|++..       .++++||.|++||+|+.|....                                    
T Consensus        86 ~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g  158 (415)
T PRK11556         86 NTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTN  158 (415)
T ss_pred             eEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            445789999999988       7999999999999999996521                                    


Q ss_pred             -----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCC--eEEEE
Q 023188          252 -----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDT--PLLVI  284 (286)
Q Consensus       252 -----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~--~L~~I  284 (286)
                                                         -...|+||++|+|..+.++.|+.|..|+  +|+.|
T Consensus       159 ~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i  228 (415)
T PRK11556        159 LVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI  228 (415)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence                                               1348999999999999999999999984  67765

>PRK12784 hypothetical protein; Provisional

Probab=97.41  E-value=0.00067  Score=53.01  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=63.4

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|.||.-|++-+       .||.+++.|-+.+.|+.|++|. .+..|.-..+|-|.-+.++.||.|..++.|+.++
T Consensus         7 ~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e   75 (84)
T PRK12784          7 EICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE   75 (84)
T ss_pred             hhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence            589999999999       8999999999999999999975 4567899999999999999999999999999986

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.38  E-value=0.00058  Score=64.97  Aligned_cols=66  Identities=29%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||..|.|+.        +++.||.|++||+|+.|-..    ....+|+||.+|+|....  ..-.|..|+.|+.|.
T Consensus       245 ~~v~A~~~G~~~~--------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~  314 (316)
T cd06252         245 CYVFAPHPGLFEP--------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA  314 (316)
T ss_pred             EEEEcCCCeEEEE--------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence            5799999999985        89999999999999998663    456789999999996544  446699999999874

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.33  E-value=0.00084  Score=63.02  Aligned_cols=65  Identities=28%  Similarity=0.356  Sum_probs=54.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec--CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM--KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam--K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ..|+||..|.|+.        .++.||.|++||+|+.|-..  ....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       220 ~~v~A~~~G~~~~--------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i  286 (287)
T cd06251         220 VWVRAPQGGLLRS--------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI  286 (287)
T ss_pred             eEEecCCCeEEEE--------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence            4799999999985        89999999999999999652  234799999999995544  66689999999987

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.25  E-value=0.00068  Score=63.67  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             CCccCCcc---eEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMA---GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~---G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|.++..   |++.+       ++|++||.|++||+|+.|+..
T Consensus        14 ~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971        14 VAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             EEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence            46889999   99999       899999999999999999863

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=97.22  E-value=0.0011  Score=63.64  Aligned_cols=65  Identities=18%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ..|+||..|.|+.        +++.||.|++||+|+.|-..    ....+|+||.+|+|..+.  ..-.|..|+.|+.|
T Consensus       256 ~~v~Ap~~Gi~~~--------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       256 CFIFAEDDGLIEF--------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL  324 (325)
T ss_pred             eEEEcCCCeEEEE--------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence            4799999999985        89999999999999988653    356799999999997755  66789999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=97.12  E-value=0.0014  Score=63.74  Aligned_cols=67  Identities=24%  Similarity=0.170  Sum_probs=54.3

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV  283 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~  283 (286)
                      +...|+||..|.|+.        +++.||.|++||+|+.|-.-    ....+|+||.+|+|..+.  ..-.|..|+.|+.
T Consensus       288 ~~~~v~Ap~~Gl~~~--------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~l~~  357 (359)
T cd06250         288 GVEMLYAPAGGMVVY--------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDELAK  357 (359)
T ss_pred             CcEEEeCCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCeEEE
Confidence            345799999999985        89999999999999988542    122336999999996555  7778999999998


Q ss_pred             E
Q 023188          284 I  284 (286)
Q Consensus       284 I  284 (286)
                      |
T Consensus       358 I  358 (359)
T cd06250         358 I  358 (359)
T ss_pred             e
Confidence            7

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=97.07  E-value=0.00083  Score=50.31  Aligned_cols=33  Identities=12%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .-.|+||.+|+|.++++++||.|+.||+|+.++
T Consensus         2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve   34 (71)
T PRK05889          2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE   34 (71)
T ss_pred             CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            346999999999999999999999999999875

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.01  E-value=0.0015  Score=54.49  Aligned_cols=39  Identities=33%  Similarity=0.508  Sum_probs=32.5

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      +-++|+.|++|+.++.||+.|...++.+|.+|+|+++.-
T Consensus        38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~   76 (122)
T PF01597_consen   38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE   76 (122)
T ss_dssp             -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred             EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence            568899999999999999999999999999999999864

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.94  E-value=0.0022  Score=61.39  Aligned_cols=33  Identities=27%  Similarity=0.446  Sum_probs=29.8

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ..|.++..|++.+       ++|++||.|++||+|+.++.
T Consensus        44 ~~v~~~~~G~v~~-------i~V~eG~~V~kG~~L~~ld~   76 (423)
T TIGR01843        44 KVVQHLEGGIVRE-------ILVREGDRVKAGQVLVELDA   76 (423)
T ss_pred             eecccCCCcEEEE-------EEeCCCCEecCCCeEEEEcc
Confidence            4588999999999       89999999999999999854

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.88  E-value=0.0013  Score=55.98  Aligned_cols=40  Identities=25%  Similarity=0.501  Sum_probs=37.1

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcC
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAE  270 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve  270 (286)
                      +-++|+.|++|+.++.||+-|...+|.||.+|+|+++.-+
T Consensus        46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~   85 (131)
T COG0509          46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA   85 (131)
T ss_pred             cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence            5689999999999999999999999999999999998643

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.85  E-value=0.0028  Score=51.45  Aligned_cols=39  Identities=46%  Similarity=0.585  Sum_probs=34.9

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      +.|++||+|++||.|+..+. -+...|.|+++|+|+.|.-
T Consensus        44 p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~   82 (101)
T PF13375_consen   44 PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK   82 (101)
T ss_pred             EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence            88999999999999999875 5578999999999998763

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.85  E-value=0.0029  Score=59.40  Aligned_cols=65  Identities=28%  Similarity=0.398  Sum_probs=52.1

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe--cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA--MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL  282 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa--mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~  282 (286)
                      ....++||..|.|+.        +++.||.|++||+|+.|-.  .....+|+||++|+|.-+.  ..-.|..|+.|+
T Consensus       222 ~~~~v~Ap~~G~~~~--------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l~  288 (288)
T cd06254         222 DVYYVTSPASGLWYP--------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPLA  288 (288)
T ss_pred             CCEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCccC
Confidence            335799999999985        8999999999999999843  3457799999999997665  445677777763

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK06748 hypothetical protein; Validated

Probab=96.66  E-value=0.0035  Score=49.41  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=31.4

Q ss_pred             eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+.-|+||..|+|.++++++||.|..|++|+.|+
T Consensus         3 ~~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE   36 (83)
T PRK06748          3 VIEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE   36 (83)
T ss_pred             EeeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence            3557999999999999999999999999999986

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.61  E-value=0.0033  Score=46.70  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      |..|.|+..|+|.+++++.|+.|+.|++|+.++
T Consensus         1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve   33 (70)
T PRK08225          1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE   33 (70)
T ss_pred             CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            457999999999999999999999999999886

>COG3608 Predicted deacylase [General function prediction only]

Probab=96.51  E-value=0.0066  Score=58.84  Aligned_cols=66  Identities=29%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec---CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM---KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam---K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ...|+||-.|.|.-        .|+.||.|++||+|+.|-.+   +...||+|+++|+|....  ---.|..|+.++.+
T Consensus       256 ~~~i~Ap~~G~v~~--------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v  324 (331)
T COG3608         256 DEMIRAPAGGLVEF--------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVV  324 (331)
T ss_pred             cceeecCCCceEEE--------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeee
Confidence            34699999999874        89999999999999999775   677899999999997765  22345555555543

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=96.35  E-value=0.0049  Score=43.93  Aligned_cols=31  Identities=32%  Similarity=0.624  Sum_probs=28.9

Q ss_pred             eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|+|+++|+|.+++++.|+.|+.|++|+.|+
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~   31 (67)
T cd06850           1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE   31 (67)
T ss_pred             CccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence            3789999999999999999999999999886

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.79  E-value=0.012  Score=50.16  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ....|+||..|++.+++|+.||.|..||.|+.||
T Consensus        69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE  102 (140)
T COG0511          69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE  102 (140)
T ss_pred             cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence            4568999999999999999999999999999986

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.77  E-value=0.026  Score=53.32  Aligned_cols=51  Identities=20%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec--CeeeeEecCCCeEEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM--KLMNEIEADQSGTIAEI  267 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam--K~~~eI~Ap~sGvV~~I  267 (286)
                      ...|+||..|.|+.        .++.||.|++||.|+.|-..  ....+++||.+|+|..+
T Consensus       231 ~~~v~Ap~~Gi~~~--------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         231 RDWVAAIHGGLFEP--------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             eEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            45799999999985        79999999999999998552  33567999999999776

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.66  E-value=0.017  Score=49.09  Aligned_cols=33  Identities=27%  Similarity=0.534  Sum_probs=30.6

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|+.+|+|.++++++||.|+.|++|+.|+
T Consensus        61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE   93 (130)
T PRK06549         61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE   93 (130)
T ss_pred             CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            356899999999999999999999999999986

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=95.61  E-value=0.021  Score=54.43  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..+..+...+  +.|++.  ...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus        32 ~~~~~~~t~~--~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~   81 (346)
T PRK10476         32 RTDSAPSTDD--AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP   81 (346)
T ss_pred             ccCceEecCC--eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            3344433333  456653  6889999999999999999999999999999874

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=95.50  E-value=0.017  Score=43.59  Aligned_cols=32  Identities=38%  Similarity=0.508  Sum_probs=27.6

Q ss_pred             eeEecCCCeEEEE------EEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAE------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ++|++|.-|.+.+      +++++|+.|..||+|+.|+
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie   38 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE   38 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence            3678888877555      9999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK07051 hypothetical protein; Validated

Probab=95.38  E-value=0.017  Score=44.31  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE  248 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE  248 (286)
                      ..|+||..|++.+       +++++||.|+.||+|+.|+
T Consensus        48 ~~i~a~~~G~v~~-------i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         48 TEVEAEAAGRVVE-------FLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             EEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEe
Confidence            4699999999999       8999999999999999985

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=95.32  E-value=0.046  Score=50.52  Aligned_cols=65  Identities=28%  Similarity=0.355  Sum_probs=53.4

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeE--EEEEec--CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVV--CIIEAM--KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L--~~IEam--K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ..++||..|.|+.        .++.||.|++||+|  +.+-..  ....+|+++.+|+|.  .....-.|..|+.|+.|
T Consensus       221 ~~~~a~~~G~~~~--------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v  289 (292)
T PF04952_consen  221 EWVRAPAGGLFEP--------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKV  289 (292)
T ss_dssp             CEEESSSSEEEEE--------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEE
T ss_pred             eeecCCccEEEEE--------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEE
Confidence            4689999999985        89999999999999  655432  344689999999994  44588899999999986

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=95.27  E-value=0.024  Score=53.12  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      -...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus        41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~   75 (334)
T TIGR00998        41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP   75 (334)
T ss_pred             ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            36789999999999999999999999999999864

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.15  E-value=0.039  Score=54.83  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             EEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          246 IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       246 ~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .|....-...|.+...|+|.+|+|++||.|..|++|++|.+
T Consensus        52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~   92 (457)
T TIGR01000        52 TIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN   92 (457)
T ss_pred             EEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence            45545556789999999999999999999999999999864

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.13  E-value=0.029  Score=48.77  Aligned_cols=32  Identities=34%  Similarity=0.551  Sum_probs=30.1

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.|+..|+|.++++++||.|+.||.|+.|+
T Consensus        85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE  116 (153)
T PRK05641         85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE  116 (153)
T ss_pred             CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence            56899999999999999999999999999885

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=94.99  E-value=0.043  Score=54.09  Aligned_cols=54  Identities=13%  Similarity=0.110  Sum_probs=42.6

Q ss_pred             ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ++.|+.-..-+..+.|++. -...|.++.+|+|.+|++++|+.|..||+|++|.+
T Consensus        67 v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~  120 (415)
T PRK11556         67 ATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP  120 (415)
T ss_pred             EEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence            3444443344456777774 45779999999999999999999999999999864

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=94.96  E-value=0.041  Score=53.34  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=42.4

Q ss_pred             ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ++.|+....-+..+.|+... ...|.+.++|+|.++++++|+.|..||+|++|.+
T Consensus        41 v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~   94 (385)
T PRK09859         41 LSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP   94 (385)
T ss_pred             eEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence            34444444444566777654 5679999999999999999999999999999974

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=94.95  E-value=0.051  Score=52.24  Aligned_cols=43  Identities=26%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             eEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          243 VVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       243 ~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .-+.|+... ...|.++.+|.|.++++++|+.|..|++|+.|.+
T Consensus        52 ~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         52 ATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             EEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            344555543 4489999999999999999999999999999864

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=94.92  E-value=0.036  Score=54.22  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=32.3

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|.++++|+|.+++|++|+.|..||+|++|.+
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~   94 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP   94 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence            7789999999999999999999999999999974

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=94.91  E-value=0.043  Score=53.08  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      +.|+.-..-...+.|++. -...|.+..+|+|.+++++.||.|..||+|+.|.+
T Consensus        44 ~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~   96 (385)
T PRK09578         44 RPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP   96 (385)
T ss_pred             EEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence            333333333445677765 35689999999999999999999999999999864

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.90  E-value=0.044  Score=52.50  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +|.+.-..|..   -+.|....-...|.++.+|+|++++|++||.|..|++|+.++
T Consensus        23 ~~~~~~~~v~~---~G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld   75 (423)
T TIGR01843        23 YFAPLDVVATA---TGKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD   75 (423)
T ss_pred             hheeccceEEe---eeEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence            34444444443   235667777888999999999999999999999999999986

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.88  E-value=0.03  Score=43.88  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      .|+||+.|++..       +.++.|+.|..|+.|+.|..+
T Consensus         1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence            489999999998       789999999999999998764

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=94.81  E-value=0.063  Score=47.49  Aligned_cols=65  Identities=28%  Similarity=0.421  Sum_probs=43.6

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE-------------------  266 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~-------------------  266 (286)
                      ..|.||+.|++..        +-++-|.|=.    ||-+++.-+   ...|.||++|+|+.                   
T Consensus        21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL   89 (169)
T PRK09439         21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELF   89 (169)
T ss_pred             eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence            3578888888875        4455554444    566665443   25666777776654                   


Q ss_pred             ----------------EEcCCCCccCCCCeEEEEc
Q 023188          267 ----------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 ----------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                      ++++.||.|..||+|+++.
T Consensus        90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D  124 (169)
T PRK09439         90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD  124 (169)
T ss_pred             EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence                            4578899999999999864

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=94.66  E-value=0.065  Score=50.69  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|.++.+|+|+++++++||.|+.|++|++|.+
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~   76 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA   76 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence            5689999999999999999999999999999863

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=94.53  E-value=0.066  Score=52.49  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=33.0

Q ss_pred             cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          250 MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       250 mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..-...|.++.+|+|.+++|++|+.|..|++|++|.+
T Consensus        55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~   91 (421)
T TIGR03794        55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ   91 (421)
T ss_pred             CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence            3445689999999999999999999999999999863

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=94.40  E-value=0.052  Score=53.09  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|.+.++|.|++++|++++.|..|++||+|.|
T Consensus        53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~   86 (352)
T COG1566          53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP   86 (352)
T ss_pred             EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence            4578899999999999999999999999999986

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=94.36  E-value=0.049  Score=54.84  Aligned_cols=39  Identities=26%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      +.|++||+|++||.|+.-+.. ....|.|+++|+|++|..
T Consensus        43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            789999999999999986543 578999999999999954

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=94.32  E-value=0.079  Score=51.70  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=35.5

Q ss_pred             EEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          245 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       245 ~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      +.|++ .-...|.+..+|+|.+++++.||.|..||+|++|++
T Consensus        58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~   98 (397)
T PRK15030         58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   98 (397)
T ss_pred             EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence            45555 336789999999999999999999999999999974

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=94.19  E-value=0.16  Score=42.82  Aligned_cols=20  Identities=25%  Similarity=0.272  Sum_probs=16.4

Q ss_pred             EEEcCCCCccCCCCeEEEEc
Q 023188          266 EILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       266 ~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +++++.||.|..|++|+++.
T Consensus        83 ~~~vk~Gd~V~~G~~l~~~D  102 (124)
T cd00210          83 TSHVEEGQRVKQGDKLLEFD  102 (124)
T ss_pred             EEEecCCCEEcCCCEEEEEc
Confidence            45678999999999999864

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=94.06  E-value=0.073  Score=50.49  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|.++.+|+|.++++++||.|..||+|++|++
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~   80 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ   80 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence            569999999999999999999999999999874

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=94.01  E-value=0.083  Score=46.03  Aligned_cols=40  Identities=25%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             ccccCCCEEecCCeEEEEEecCee-eeEecCCCeEEEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEILA  269 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~-~eI~Ap~sGvV~~Ilv  269 (286)
                      +.+.+||.|.+||.|+.|.|.|-. .-|+||++|+|.-+.-
T Consensus        94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e  134 (150)
T PF09891_consen   94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE  134 (150)
T ss_dssp             ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred             EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence            689999999999999999999976 5799999999987763

; PDB: 3D4R_D.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=93.81  E-value=0.13  Score=51.69  Aligned_cols=39  Identities=33%  Similarity=0.285  Sum_probs=33.4

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      ..|++||+|++||.|+.-... ....+.|+++|+|++|..
T Consensus        44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            789999999999999965433 468999999999999953

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=93.58  E-value=0.22  Score=41.84  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=17.4

Q ss_pred             EEEEcCCCCccCCCCeEEEEc
Q 023188          265 AEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       265 ~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -+++++.||.|..||+|+++.
T Consensus        82 F~~~v~~Gd~V~~G~~l~~~D  102 (121)
T TIGR00830        82 FTSHVEEGQRVKKGDPLLEFD  102 (121)
T ss_pred             eEEEecCCCEEcCCCEEEEEc
Confidence            356688999999999999864

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.35  E-value=0.052  Score=49.53  Aligned_cols=32  Identities=28%  Similarity=0.499  Sum_probs=22.4

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      .|.++..|++..       .+|++||.|++||+|+.|+.
T Consensus         3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~   34 (305)
T PF00529_consen    3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDP   34 (305)
T ss_dssp             EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--
T ss_pred             EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEe
Confidence            478889999999       89999999999999999975

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=93.34  E-value=0.083  Score=52.64  Aligned_cols=39  Identities=41%  Similarity=0.479  Sum_probs=34.1

Q ss_pred             CccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE
Q 023188          229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL  268 (286)
Q Consensus       229 ~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il  268 (286)
                      .+.|++||+|+.||.|+..+ ......|.|+++|+|++|.
T Consensus        44 ~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        44 EPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             ceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            37899999999999999873 3357899999999999985

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.29  E-value=0.13  Score=48.36  Aligned_cols=38  Identities=32%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             ccccCCCEEecCCeEEEEEecCe--eeeEecCCCeEEEEEEcC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKL--MNEIEADQSGTIAEILAE  270 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~--~~eI~Ap~sGvV~~Ilve  270 (286)
                      ..|++||+|++||+|++   +|-  ..-..||++|+|++|..-
T Consensus        43 m~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG   82 (257)
T PF05896_consen   43 MLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRG   82 (257)
T ss_pred             EEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecC
Confidence            68999999999999997   443  356789999999998863

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=93.11  E-value=0.11  Score=57.67  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +...+...+.|..+.       ..|+.|+.+..++.....+. .-...|.|+..|+|.+++++.||.|..|++|+.|+
T Consensus      1037 g~r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235      1037 GEREVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred             CcEEEEEEECCeEEE-------EEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence            334677788888877       67888888877776554432 22357999999999999999999999999999986

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=92.77  E-value=0.25  Score=44.93  Aligned_cols=44  Identities=30%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             CeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          242 QVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       242 q~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...+.++. .....|.+...|+|.+|++++||.|..|++|+.+++
T Consensus        56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            34445555 333478888999999999999999999999999863

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=92.51  E-value=0.27  Score=41.78  Aligned_cols=65  Identities=28%  Similarity=0.424  Sum_probs=42.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEE----ecCCeEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKV----QKGQVVCIIEAMKLMNEIEADQSGTIAEI------------------  267 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V----~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I------------------  267 (286)
                      ..|.||+.|++..        +-++-|.|    --|+-+++.=..   ..|.||++|+|..+                  
T Consensus         3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL   71 (132)
T PF00358_consen    3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL   71 (132)
T ss_dssp             EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred             eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence            3688999999987        33444444    236777766443   36788888877753                  


Q ss_pred             -----------------EcCCCCccCCCCeEEEEc
Q 023188          268 -----------------LAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       268 -----------------lve~Gd~V~~G~~L~~Ie  285 (286)
                                       +++.||.|..||+|+++.
T Consensus        72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D  106 (132)
T PF00358_consen   72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD  106 (132)
T ss_dssp             EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred             EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence                             455677788888888763

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=92.00  E-value=0.15  Score=52.14  Aligned_cols=42  Identities=40%  Similarity=0.457  Sum_probs=36.7

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE---cCCCC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL---AEDGK  273 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il---ve~Gd  273 (286)
                      ++|++||+|.+||.|..=+.  .+..+.||.+|+|++|.   +.++.
T Consensus        47 ~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~s   91 (529)
T COG4656          47 LLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPS   91 (529)
T ss_pred             eEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcc
Confidence            78999999999999987665  89999999999999998   55544

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=91.99  E-value=0.27  Score=48.44  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=36.0

Q ss_pred             eEEEEEecC-eeeeEecCCCeEEEEEE-cCCCCccCCCCeEEEEc
Q 023188          243 VVCIIEAMK-LMNEIEADQSGTIAEIL-AEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       243 ~L~~IEamK-~~~eI~Ap~sGvV~~Il-ve~Gd~V~~G~~L~~Ie  285 (286)
                      ..+.|+.+. -...|.+.++|.|.+++ +..||.|..||+|++|.
T Consensus       112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~  156 (409)
T PRK09783        112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT  156 (409)
T ss_pred             EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence            346666543 34589999999999998 99999999999999986

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=91.87  E-value=0.47  Score=42.04  Aligned_cols=55  Identities=15%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             ccccCCCEEecCCeEEEEEecC-------eeeeEecCCCeEEEEEEcCCCCccCCCCe-EEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMK-------LMNEIEADQSGTIAEILAEDGKSVSVDTP-LLVIV  285 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK-------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~-L~~Ie  285 (286)
                      ++|++||+|++||.|+.+.-..       ....|.-.-...+..+....| .|..|+. |+.|+
T Consensus       106 ~~Vk~Gd~Vk~G~~L~~~D~~~i~~~g~~~~~~vvitn~~~~~~~~~~~~-~v~~g~~~~~~i~  168 (169)
T PRK09439        106 RIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTAGETPVIRVK  168 (169)
T ss_pred             EEecCCCEEeCCCEEEEEcHHHHHhcCCCCeEEEEEeccccccceecccC-ceecCCeEEEEEe
Confidence            7899999999999999886532       233333333333333444445 4666664 55553

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=91.78  E-value=0.23  Score=44.74  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||.+|+|..+.+..|+.|..|++|+.|.
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~  120 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA  120 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence            36899999999999999999999999999874

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=91.62  E-value=0.13  Score=45.52  Aligned_cols=45  Identities=31%  Similarity=0.455  Sum_probs=39.2

Q ss_pred             CCccc---cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCC
Q 023188          228 EPAFV---KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG  272 (286)
Q Consensus       228 ~~~~V---kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~G  272 (286)
                      .-|||   ++|..|.+||.++.+|.-|...+|.+|++|+|++|.-+=.
T Consensus        81 dvv~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~  128 (172)
T KOG3373|consen   81 DVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE  128 (172)
T ss_pred             ceEEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence            33555   7899999999999999999999999999999999975433

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=91.54  E-value=0.21  Score=52.88  Aligned_cols=38  Identities=37%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL  268 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il  268 (286)
                      +.|++||+|.+||.|+.-+ .-....|.||.+|+|+.|.
T Consensus        51 ~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         51 LCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             ceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            7899999999999999653 2256899999999999985

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=91.51  E-value=0.41  Score=49.94  Aligned_cols=75  Identities=21%  Similarity=0.330  Sum_probs=49.9

Q ss_pred             CCccCCcceEEEccCCCC----------C------------------CccccCCCEEecCCeEEEEEecC-------eee
Q 023188          210 PPLKCPMAGTFYRCPAPG----------E------------------PAFVKVGDKVQKGQVVCIIEAMK-------LMN  254 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~----------~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~~  254 (286)
                      ..|.||..|++....+-.          .                  ..+|++||+|++||.|+.+.-..       ...
T Consensus       500 ~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~  579 (610)
T TIGR01995       500 GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTT  579 (610)
T ss_pred             CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCee
Confidence            579999999877543211          1                  17899999999999999886542       233


Q ss_pred             eEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .|.-.-......+....+..|..|+.++.+
T Consensus       580 ~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~  609 (610)
T TIGR01995       580 PVVVTNTKDFLDVIPTDKETVTAGDVLLRL  609 (610)
T ss_pred             EEEEEccccccceeeccCCcccCCCeeEEe
Confidence            333333333344555566679999988875

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=91.33  E-value=0.17  Score=43.99  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE  248 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE  248 (286)
                      ...|+|+..|++.+       ++++.||.|..||.|+.|+
T Consensus       124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence            34699999999999       8999999999999999985

The gene name is accB or fabE.

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=91.03  E-value=0.46  Score=41.70  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=16.8

Q ss_pred             EEEcCCCCccCCCCeEEEEc
Q 023188          266 EILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       266 ~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +.++++||.|..||+|+++.
T Consensus        90 ~~~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          90 ESLVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             EEEeeCCCEEccCCEEEEEC
Confidence            45788999999999999863

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=90.97  E-value=0.2  Score=43.44  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE  248 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE  248 (286)
                      ...|+||..|++.+       ++++.|+.|..||.|+.|+
T Consensus       123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence            34799999999999       8999999999999999885

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=90.94  E-value=0.5  Score=49.62  Aligned_cols=64  Identities=20%  Similarity=0.353  Sum_probs=47.3

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE--------------------
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE--------------------  266 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~--------------------  266 (286)
                      .|.||+.|++..        +-++-|.|=.    ||-+++.=.+   ..|.||++|+|+.                    
T Consensus       480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi  548 (627)
T PRK09824        480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLI  548 (627)
T ss_pred             hcccccceEEee--------HHHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence            589999999886        5566666655    6666665443   5778888887663                    


Q ss_pred             ---------------EEcCCCCccCCCCeEEEEc
Q 023188          267 ---------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 ---------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                     .++++||.|..||+|+++.
T Consensus       549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D  582 (627)
T PRK09824        549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD  582 (627)
T ss_pred             EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence                           4667899999999999864

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=90.75  E-value=0.42  Score=43.07  Aligned_cols=48  Identities=25%  Similarity=0.345  Sum_probs=39.1

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL  282 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~  282 (286)
                      ++++|+.+++||.++.++-. ....+.-|.+   .++.++.||.|..|+.++
T Consensus       155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi  202 (206)
T PRK05305        155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL  202 (206)
T ss_pred             eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence            67899999999999999876 4555666655   388999999999998543

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=90.73  E-value=0.29  Score=51.09  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+|.||..|+|.+++++.||.|+.||+|+.||
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE  557 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE  557 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence            46999999999999999999999999999986

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=90.70  E-value=0.58  Score=49.31  Aligned_cols=66  Identities=27%  Similarity=0.410  Sum_probs=47.0

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEEE-----------------
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI-----------------  267 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~I-----------------  267 (286)
                      ...|.||+.|++..        .-++-|.|=.    ||-+++.-++   ..|.||++|+|+.+                 
T Consensus       498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei  566 (648)
T PRK10255        498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI  566 (648)
T ss_pred             ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence            34699999999987        3444444332    6666665543   57888888877653                 


Q ss_pred             ------------------EcCCCCccCCCCeEEEEc
Q 023188          268 ------------------LAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       268 ------------------lve~Gd~V~~G~~L~~Ie  285 (286)
                                        ++++||.|..||+|+++.
T Consensus       567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D  602 (648)
T PRK10255        567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD  602 (648)
T ss_pred             EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence                              377899999999999864

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=90.50  E-value=0.6  Score=49.05  Aligned_cols=75  Identities=28%  Similarity=0.378  Sum_probs=48.0

Q ss_pred             CCccCCcceEEEccCCCC----------C------------------CccccCCCEEecCCeEEEEEecC-------eee
Q 023188          210 PPLKCPMAGTFYRCPAPG----------E------------------PAFVKVGDKVQKGQVVCIIEAMK-------LMN  254 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~----------~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~~  254 (286)
                      ..|.||..|++....+-.          .                  ..+|++||+|++||.|+.+.-..       ...
T Consensus       516 ~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~  595 (627)
T PRK09824        516 GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTT  595 (627)
T ss_pred             CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeE
Confidence            589999999877542211          1                  18899999999999999886532       222


Q ss_pred             eEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .|.-.-......+....+..|..|+.|+.+
T Consensus       596 ~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~  625 (627)
T PRK09824        596 PVLISNSDDYTDVLPHATAQVSAGEPLLSI  625 (627)
T ss_pred             EEEEEccccccceeeccCCcccCCCeEEEe
Confidence            222222222233334455679999988875

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=90.46  E-value=0.42  Score=47.27  Aligned_cols=39  Identities=33%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             ccccCCCEEecCCeEEEEEecCe--eeeEecCCCeEEEEEEcCC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKL--MNEIEADQSGTIAEILAED  271 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~--~~eI~Ap~sGvV~~Ilve~  271 (286)
                      ..|++||.|++||+|++   +|.  -.-++||++|+|++|+.-+
T Consensus        43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~   83 (447)
T COG1726          43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence            67999999999999987   443  3568999999999998544

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=90.36  E-value=0.5  Score=42.07  Aligned_cols=48  Identities=25%  Similarity=0.380  Sum_probs=39.3

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL  282 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~  282 (286)
                      ++++|+.|++||.++.++-. ....+.-|.+   .++.++.|+.|..|+.|+
T Consensus       135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            67899999999999999876 4455556655   378899999999999765

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=90.26  E-value=0.34  Score=47.58  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~  285 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE  285 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence            67999999999999999999999999999884

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=89.99  E-value=0.31  Score=45.30  Aligned_cols=35  Identities=20%  Similarity=0.489  Sum_probs=31.8

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK  251 (286)
                      ..|+||..|++..       .++++||.|..||+|+.|+.+.
T Consensus        46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence            4699999999998       7999999999999999998653

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=89.85  E-value=0.39  Score=45.56  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=27.6

Q ss_pred             EecCCCeEEEE-------EEcCCCCccCCCCeEEEEc
Q 023188          256 IEADQSGTIAE-------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       256 I~Ap~sGvV~~-------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      |.|+..|+|.+       ++++.||.|+.||.|+.||
T Consensus       200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE  236 (274)
T PLN02983        200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE  236 (274)
T ss_pred             EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence            78999999988       5999999999999999986

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=89.42  E-value=0.47  Score=36.46  Aligned_cols=28  Identities=39%  Similarity=0.500  Sum_probs=20.5

Q ss_pred             CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      -+.+|...         +++.||.|++||+||.|=+.
T Consensus        29 D~~vGi~l---------~~k~Gd~V~~Gd~l~~i~~~   56 (75)
T PF07831_consen   29 DPAVGIEL---------HKKVGDRVEKGDPLATIYAN   56 (75)
T ss_dssp             -TT-EEEE---------SS-TTSEEBTTSEEEEEEES
T ss_pred             CcCcCeEe---------cCcCcCEECCCCeEEEEEcC
Confidence            35677765         58999999999999998554

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=89.08  E-value=0.47  Score=49.34  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.||..|+|.++++++||.|..|++|+.|+
T Consensus       517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE  549 (582)
T TIGR01108       517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE  549 (582)
T ss_pred             CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence            357999999999999999999999999999986

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=89.05  E-value=0.47  Score=49.48  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=30.8

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -..|.||..|+|.++++++||.|+.|++|+.|+
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE  556 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE  556 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence            347999999999999999999999999999986

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=88.68  E-value=1  Score=47.04  Aligned_cols=64  Identities=31%  Similarity=0.457  Sum_probs=43.8

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEE---------------------
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIA---------------------  265 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~---------------------  265 (286)
                      .|.||+.|++..        +-++-|.|=.    ||-+++.-.   ...|.||++|+|.                     
T Consensus       464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili  532 (610)
T TIGR01995       464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI  532 (610)
T ss_pred             eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence            588999998886        4455555544    555555432   2466677776555                     


Q ss_pred             --------------EEEcCCCCccCCCCeEEEEc
Q 023188          266 --------------EILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       266 --------------~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                    +.++++||.|..||+|+++.
T Consensus       533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d  566 (610)
T TIGR01995       533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD  566 (610)
T ss_pred             EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence                          35678899999999999864

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=88.52  E-value=0.36  Score=48.99  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=32.0

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ...|.||..|++.+       +++++||.|..||+|+.|+..
T Consensus       134 ~~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        134 TIDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             eeEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence            35799999999999       899999999999999999754

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=88.52  E-value=0.43  Score=35.12  Aligned_cols=31  Identities=29%  Similarity=0.462  Sum_probs=28.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEE
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCII  247 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~I  247 (286)
                      ..|+||..|++.+       ++++.|+.|..|+.|+.|
T Consensus        43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence            4699999999999       789999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=88.30  E-value=0.85  Score=48.10  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=47.1

Q ss_pred             CCCccCCcceEEEccCCCCC----------C------------------ccccCCCEEecCCeEEEEEecCe-------e
Q 023188          209 HPPLKCPMAGTFYRCPAPGE----------P------------------AFVKVGDKVQKGQVVCIIEAMKL-------M  253 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~----------~------------------~~VkvGd~V~~Gq~L~~IEamK~-------~  253 (286)
                      ...|.||..|++....+-..          +                  .+|++||+|++||.|+.+.-.++       .
T Consensus       535 ~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i~~~g~~~~  614 (648)
T PRK10255        535 DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMI  614 (648)
T ss_pred             CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCe
Confidence            35899999999875432211          1                  77999999999999998865432       2


Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~-~L~~Ie  285 (286)
                      ..|.-.-......+.......|..|+ +|+.++
T Consensus       615 ~~vvvtN~~~~~~~~~~~~~~v~~g~~~~~~i~  647 (648)
T PRK10255        615 SPVVCSNIDDFSGLIIKAQGHVVAGQTPLYEIK  647 (648)
T ss_pred             EEEEEEccccccceeeccCCceecCCceEEEEc
Confidence            33332222223223333333466665 687775

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=88.11  E-value=0.61  Score=48.57  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|+..|+|.++++++|+.|+.|++|+.|+
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie  554 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE  554 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence            357999999999999999999999999999986

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=87.53  E-value=0.45  Score=47.39  Aligned_cols=34  Identities=12%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|.++..|++..       .+|++||.|++||+|+.|+..
T Consensus        60 ~~vq~~~~G~v~~-------i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        60 SKIQSTSNNAIKE-------NYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             EEEEcCCCcEEEE-------EEcCCCCEecCCCEEEEECch
Confidence            4789999999998       799999999999999999763

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=87.50  E-value=0.6  Score=48.56  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+.||..|+|+.|.|++|+.|..||+|+.+|
T Consensus       577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE  607 (645)
T COG4770         577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE  607 (645)
T ss_pred             ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence            5899999999999999999999999999886

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=87.23  E-value=0.61  Score=45.77  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=31.2

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|+||.+|+|.+..+..|+.|..|.+|+.+-|
T Consensus       208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp  241 (352)
T COG1566         208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP  241 (352)
T ss_pred             CCEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence            5689999999999999999999999999998754

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=87.11  E-value=0.81  Score=40.80  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             CccCCcceEEEccCCCCCCccc--cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFV--KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL  282 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~V--kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~  282 (286)
                      .|-+-.+|.+..        ++  ++|+.|++||.++.++= .-...+.-+.+- +.++.++.|+.|..|+.|+
T Consensus       138 ~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~V~~Ge~i~  201 (202)
T PF02666_consen  138 QVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQKVRAGETIG  201 (202)
T ss_pred             EeccceeceeEE--------EecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCEEEeeeEEe
Confidence            466777787775        45  68999999999999986 444444444333 3389999999999999986

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=86.82  E-value=0.85  Score=38.30  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             ccccCCCEEecCCeEEEEEec
Q 023188          230 AFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      .+|++||+|++||.|+.+.-.
T Consensus        84 ~~v~~Gd~V~~G~~l~~~D~~  104 (121)
T TIGR00830        84 SHVEEGQRVKKGDPLLEFDLK  104 (121)
T ss_pred             EEecCCCEEcCCCEEEEEcHH
Confidence            789999999999999988643

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=85.97  E-value=0.64  Score=39.55  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=17.2

Q ss_pred             ccccCCCEEecCCeEEEEEecCe
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKL  252 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~  252 (286)
                      ++|++||+|++||.|+.+.-.++
T Consensus        88 ~~v~~G~~V~~G~~L~~~D~~~i  110 (132)
T PF00358_consen   88 TLVKEGDKVKAGQPLIEFDLEKI  110 (132)
T ss_dssp             ESS-TTSEE-TTEEEEEE-HHHH
T ss_pred             EEEeCCCEEECCCEEEEEcHHHH
Confidence            88999999999999999865443

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=85.61  E-value=1.2  Score=30.77  Aligned_cols=28  Identities=32%  Similarity=0.391  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          258 ADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       258 Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +..+|.|..+++..|+.|.+|++|+.++
T Consensus        11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~   38 (74)
T cd06849          11 SMTEGTIVEWLVKEGDSVEEGDVLAEVE   38 (74)
T ss_pred             CCcEEEEEEEEECCCCEEcCCCEEEEEE
Confidence            6788999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR02712 urea_carbox urea carboxylase

Probab=85.41  E-value=0.93  Score=50.90  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=30.6

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|+..|+|.++++++||.|+.|++|+.||
T Consensus      1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712      1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred             CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence            346999999999999999999999999999986

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=85.16  E-value=1.1  Score=37.73  Aligned_cols=20  Identities=20%  Similarity=0.438  Sum_probs=18.1

Q ss_pred             ccccCCCEEecCCeEEEEEe
Q 023188          230 AFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ++|++||+|++||.|+.+.-
T Consensus        84 ~~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          84 SHVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             EEecCCCEEcCCCEEEEEcH
Confidence            78999999999999998864

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=84.87  E-value=0.81  Score=45.85  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK  251 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK  251 (286)
                      ...|.||..|++.+       .++++||.|..|++|+.|+...
T Consensus        87 ~~ei~Ap~~G~v~~-------i~v~~G~~V~~G~~L~~I~~~~  122 (418)
T PTZ00144         87 SVDIRAPASGVITK-------IFAEEGDTVEVGAPLSEIDTGG  122 (418)
T ss_pred             EEEEecCCCeEEEE-------EEeCCCCEecCCCEEEEEcCCC
Confidence            35799999999998       7999999999999999998643

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=83.34  E-value=2  Score=37.78  Aligned_cols=55  Identities=20%  Similarity=0.303  Sum_probs=34.0

Q ss_pred             ccccCCCEEecCCeEEEEEecC-------eeeeEecCCCeEE-EEEEcCCCCccCCCCeEEEE
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMK-------LMNEIEADQSGTI-AEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK-------~~~eI~Ap~sGvV-~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .+|++||+|++||.|+...-+.       +..+|.-.-...+ .-+....+..|..|+.|+.+
T Consensus        91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~  153 (156)
T COG2190          91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV  153 (156)
T ss_pred             EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence            7899999999999999886542       2233322222222 22333344477888888764

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=81.91  E-value=1.3  Score=44.17  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=32.3

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK  251 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK  251 (286)
                      ...|.||..|++.+       +++++||.|..|++|+.|+...
T Consensus        45 ~~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         45 VLEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence            35799999999998       7999999999999999998654

>PRK12999 pyruvate carboxylase; Reviewed

Probab=81.83  E-value=1.6  Score=48.82  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=30.3

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.|+..|+|.+++++.||.|..||+|+.|+
T Consensus      1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999       1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred             ceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence            57999999999999999999999999999886

>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins

Probab=81.82  E-value=3  Score=41.02  Aligned_cols=53  Identities=28%  Similarity=0.372  Sum_probs=39.0

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEE--EEEecCeeeeEecCCCeEEE
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC--IIEAMKLMNEIEADQSGTIA  265 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~--~IEamK~~~eI~Ap~sGvV~  265 (286)
                      .|-|-..|.+.+.-.-...+.|++||.|++||+|.  .|+......+  -..+|.|.
T Consensus       191 ~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~--v~A~G~V~  245 (385)
T PF06898_consen  191 NLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE--VHADGDVK  245 (385)
T ss_pred             ceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE--ECCcEEEE
Confidence            57788889888876667778999999999999995  6655444334  44556554

YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].

>TIGR02876 spore_yqfD sporulation protein YqfD

Probab=81.74  E-value=3.1  Score=41.01  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEE
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC  245 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~  245 (286)
                      ..|.|-..|.+.+.-.-...+.|++||.|++||+|.
T Consensus       187 ~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI  222 (382)
T TIGR02876       187 RNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI  222 (382)
T ss_pred             ccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence            358888889888876666778999999999999996

YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=81.46  E-value=1.3  Score=39.76  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=28.0

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE  248 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE  248 (286)
                      .|+||+.|++..       .++.+|+.|..|+.|+.|-
T Consensus        90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~  120 (265)
T TIGR00999        90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVA  120 (265)
T ss_pred             EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEE
Confidence            479999999998       7899999999999999764

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=81.33  E-value=1.4  Score=40.40  Aligned_cols=36  Identities=31%  Similarity=0.511  Sum_probs=31.5

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ....|+||+.|++..       ..+..|+.|..|+.|+.|...
T Consensus       133 ~~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730       133 RYTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             ccCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEcC
Confidence            345899999999998       789999999999999988654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=80.96  E-value=1.3  Score=40.13  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=29.1

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      .|.+...|.+..       .+|++||.|++||+|+.++.
T Consensus        68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence            577778899988       89999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3bdo_A	82	Solution Structure Of Apo-Biotinyl Domain From Acet		6e-15
1bdo_A	80	Structure Of The Biotinyl Domain Of Acetyl-Coenzyme		6e-15
1a6x_A	87	Structure Of The Apo-Biotin Carboxyl Carrier Protei		7e-15

>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl Coenzyme A Carboxylase Of Escherichia Coli Determined By Triple-Resonance Nmr Spectroscopy Length = 82

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
           + PM GTFYR P+P   AF             CI+EAMK+MN+IEAD+SGT+  IL E G
Sbjct: 10  RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 69
Query: 273 KSVSVDTPLLVI 284
           + V  D PL+VI
Sbjct: 70  QPVEFDEPLVVI 81

>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A Carboxylase Determined By Mad Phasing Length = 80

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
           + PM GTFYR P+P   AF             CI+EAMK+MN+IEAD+SGT+  IL E G
Sbjct: 8   RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 67
Query: 273 KSVSVDTPLLVI 284
           + V  D PL+VI
Sbjct: 68  QPVEFDEPLVVI 79

>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo- Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr, 49 Structures Length = 87

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 45/72 (62%)
Query: 213 KCPMAGTFYRCPAPGEPAFXXXXXXXXXXXXXCIIEAMKLMNEIEADQSGTIAEILAEDG 272
           + PM GTFYR P+P   AF             CI+EAMK+MN+IEAD+SGT+  IL E G
Sbjct: 15  RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 74
Query: 273 KSVSVDTPLLVI 284
           + V  D PL+VI
Sbjct: 75  QPVEFDEPLVVI 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	8e-38
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	4e-18
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	5e-17
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	7e-17
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	9e-17
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	3e-16
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	8e-16
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	1e-15
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	2e-15
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	2e-13
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	4e-11
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	4e-11
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	1e-10
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	8e-10
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	2e-09
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	6e-09
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	2e-08
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	4e-08
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	5e-08
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	9e-08
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	3e-07
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	4e-07
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	3e-06
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	5e-06
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	1e-04
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	2e-04
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	2e-04
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-04

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80

 Score =  127 bits (322), Expect = 8e-38
 Identities = 41/73 (56%), Positives = 54/73 (73%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           ++ PM GTFYR P+P   AF++VG KV  G  +CI+EAMK+MN+IEAD+SGT+  IL E 
Sbjct: 7   VRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66

Query: 272 GKSVSVDTPLLVI 284
           G+ V  D PL+VI
Sbjct: 67  GQPVEFDEPLVVI 79

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 83.1 bits (206), Expect = 4e-18
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 190 SPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249
               ++      P A K     +  PM G             V  G KV KGQ +C++ A
Sbjct: 630 KDTQAMKEMHFHPKALKDVKGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSA 682

Query: 250 MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           MK+   + +   GT+ ++      ++  D  +L I
Sbjct: 683 MKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 186  PAPASPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC 245
             A A    S                 L     G F++           VGD V+ G  V 
Sbjct: 1144 VANAELKKSGDDKPQDVEEYPDDAELLYSEYTGRFWKP-------VAAVGDHVEAGDGVI 1196

Query: 246  IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285
            IIEAMK    + A +SG + +IL ++G  V     + VIV
Sbjct: 1197 IIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 72.8 bits (179), Expect = 9e-17
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 192 ASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251
           +S V +       +  +   L+ PM G             VK GD V +GQ +C+IEAMK
Sbjct: 8   SSGVDLGTENLYFQSMTSSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMK 60

Query: 252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           + N + A ++GT+  +  + G +V     L+ +
Sbjct: 61  MQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           +  PM G   R         V+VGD+V+ GQ + ++EAMK+ NEI + + G +  IL ++
Sbjct: 8   VSAPMPGKVLRV-------LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKE 60

Query: 272 GKSVSVDTPLLVI 284
           G++V    PL+ +
Sbjct: 61  GEAVDTGQPLIEL 73

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 70.0 bits (172), Expect = 8e-16
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 203 PAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSG 262
            A K+    +  P+AGT  +         VK GD V+ GQ V ++EAMK+  EI A   G
Sbjct: 2   GAGKAGEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDG 54

Query: 263 TIAEILAEDGKSVSVDTPLLVI 284
            + ++L ++  +V     L+ I
Sbjct: 55  KVEKVLVKERDAVQGGQGLIKI 76

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           +   MAG  ++         VK GD+++KGQ V I+E+MK+   I AD+SG + E+  ++
Sbjct: 2   VSIQMAGNLWKV-------HVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE 54

Query: 272 GKSVSVDTPLLVIVP 286
           G  V+    LL +  
Sbjct: 55  GDFVNEGDVLLELSN 69

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 190 SPASSVPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249
           +P  +     +P      +   L CPM G   +         V+VG +VQ+GQ +C IEA
Sbjct: 593 TPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKV-------DVEVGQEVQEGQALCTIEA 645

Query: 250 MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           MK+ N + A++ G +A+I A  G S++VD  ++  
Sbjct: 646 MKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
              PM GT  +        FVK GDKV+ G  + ++ AMK+ + I++ + GT+ ++   +
Sbjct: 17  PLAPMTGTIEKV-------FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYRE 69

Query: 272 GKSVSVDTPLLVIVP 286
           G   +  TPL+    
Sbjct: 70  GAQANRHTPLVEFEE 84

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 215  PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274
             M G+            V VG+ V+  Q + I EAMK+   I+A   G I ++   +G +
Sbjct: 1083 QMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT 1135

Query: 275  VSVDTPLLVIVP 286
            ++    L+ I  
Sbjct: 1136 IATGDLLIEIEK 1147

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 214  CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK 273
             PM G   R        FV  G  V  G V+  IEAMK+   I A++ GTIAE+L + G 
Sbjct: 1100 APMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD 1152

Query: 274  SVSVDTPLLVI 284
             +     L V 
Sbjct: 1153 QIDAKDLLAVY 1163

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           L+ P AG   +         V+ G  V+ G     +E MK++  +   + G + + +   
Sbjct: 8   LRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRP 59

Query: 272 GKSVSVDTPLLVI 284
           G  +     +  +
Sbjct: 60  GAVLEAGCVVARL 72

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 54.0 bits (130), Expect = 8e-10
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           L+ P AG   +         V+ G  V+ G     +E MK++  +   + G + + +   
Sbjct: 20  LRSPSAGKLTQY-------TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRP 71

Query: 272 GKSVSVDTPLLVIVP 286
           G  +     +  +  
Sbjct: 72  GAVLEAGCVVARLEL 86

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            VK GD V+K Q +  +   K+  +I +   G I +IL  +G+ V V + LL I
Sbjct: 22  DVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQI 75

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           +VK GD V +   +C +++ K    I +   G I ++         V  PL+ I
Sbjct: 25  YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV 285
            K G+ V  G  +C IE  K +  ++A   G +A+I+ E+G K++ + + + +IV
Sbjct: 29  KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIVP 286
             K GDK+ +G ++  +E  K     E+ +   +A+IL  +G + V +   + + V 
Sbjct: 28  EKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVG 84

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIVP 286
             KVG+K+ +G ++  IE  K     E  + G +A+IL  +G + V + TPL +IV 
Sbjct: 48  EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 104

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           FVK GD+V +  V+C ++  K + EI +   G + EIL  +G   +V   L+ +
Sbjct: 23  FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 76

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIVP 286
             KVG+K+ +G ++  IE        E  + G +A+IL  +G + V + TPL +IV 
Sbjct: 26  EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
             K G+ V++ +++  IE  K++ E+ A+  G IAEI+  +G +V     L  +
Sbjct: 22  HKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
             K GD V + +V+  IE  K++ E+ A   G +  +L ++G +V+    L  +
Sbjct: 23  HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           VKVGDKV   Q +  +E  K   E+ A  +G + E+    G  V   + +++ 
Sbjct: 22  VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 74

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 10/53 (18%), Positives = 27/53 (50%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           VK GD ++  Q + ++E+ K   E+ + ++G +  +  + G  +     ++ +
Sbjct: 20  VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIEL 72

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           V VGD +     +  +E  K   ++ A+ +G + E+  + G  +S    ++V+
Sbjct: 23  VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV 75

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           VKVGDKV   Q +  +E  K   E+ A  +G + E+    G  V   + +++ 
Sbjct: 18  VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 70

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 17/79 (21%), Positives = 20/79 (25%), Gaps = 2/79 (2%)

Query: 154 PPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAK--KSSHPP 211
                  +    P +  P P P  P A     P       SV    L  P     +S  P
Sbjct: 29  TSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAP 88

Query: 212 LKCPMAGTFYRCPAPGEPA 230
                       PA   PA
Sbjct: 89  AVRYGRQPGPEAPASAPPA 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.68
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.57
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.57
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.53
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.53
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.52
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.51
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.51
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.5
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.5
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.49
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.48
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.48
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.47
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.46
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.44
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.44
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.44
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.43
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.42
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.41
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.39
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.38
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.37
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.23
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	99.21
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	99.19
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.16
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.12
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	99.01
1hpc_A	131	H protein of the glycine cleavage system; transit	98.76
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.74
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.73
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.27
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.18
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.17
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.17
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.07
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.98
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	97.87
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.79
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.78
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.73
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.66
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	97.65
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	97.47
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	97.44
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.41
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	97.38
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	97.35
2qj8_A	332	MLR6093 protein; structural genomics, joint center	96.95
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.78
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.63
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	96.52
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	96.32
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	95.8
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.76
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	95.75
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	95.71
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	95.69
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	95.67
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	95.35
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	95.29
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	95.05
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	94.92
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	94.89
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	94.79
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	94.64
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	94.61
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	94.49
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	94.35
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	94.28
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	94.07
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	93.99
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	93.95
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	93.94
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	93.79
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	93.37
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	93.16
3our_B	183	EIIA, phosphotransferase system IIA component; exh	93.06
2xha_A	193	NUSG, transcription antitermination protein NUSG;	92.97
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	92.86
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	92.79
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	91.69
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	91.37
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	91.28
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	91.24
3our_B	183	EIIA, phosphotransferase system IIA component; exh	90.01
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	88.22
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	88.03
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	87.31
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	86.83
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	86.52
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	85.93
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	85.81
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	84.08
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	80.07

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.68  E-value=1.5e-16  Score=119.85  Aligned_cols=76  Identities=54%  Similarity=0.960  Sum_probs=73.3

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||+.|++++.+.+...|++++||.|++||.|+.||+||+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            3699999999999988999999999999999999999999999999999999999999999999999999999985

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.57  E-value=3.1e-15  Score=114.63  Aligned_cols=69  Identities=20%  Similarity=0.325  Sum_probs=66.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|+||+.|++++       |+|++||.|++||+|+.||+||+.++|+||.+|+|.+++ +.|+.|..|++|++|.+
T Consensus         6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~   74 (84)
T 2kcc_A            6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL   74 (84)
T ss_dssp             TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred             ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence            4699999999999       999999999999999999999999999999999999999 99999999999999864

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.57  E-value=8.4e-15  Score=107.38  Aligned_cols=69  Identities=36%  Similarity=0.582  Sum_probs=66.1

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .|+||+.|++.+       |++++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+.|..|++|+.|.+
T Consensus         1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   69 (72)
T 1z6h_A            1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN   69 (72)
T ss_dssp             CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred             CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence            378999999999       999999999999999999999999999999999999999999999999999999864

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.53  E-value=1.9e-14  Score=110.60  Aligned_cols=65  Identities=34%  Similarity=0.483  Sum_probs=61.8

Q ss_pred             CcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEcC
Q 023188          215 PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIVP  286 (286)
Q Consensus       215 P~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Iep  286 (286)
                      ...|++.+       |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+ .|..|++|++|++
T Consensus        17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C           17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred             CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence            36789999       99999999999999999999999999999999999999999999 8999999999863

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.53  E-value=2.7e-14  Score=107.27  Aligned_cols=66  Identities=27%  Similarity=0.355  Sum_probs=62.8

Q ss_pred             CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      +++.|++.+       |+|++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|.+
T Consensus        12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            457899998       999999999999999999999999999999999999999999999999999999864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=112.28  Aligned_cols=69  Identities=19%  Similarity=0.337  Sum_probs=66.3

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|+||+.|++.+       |+|++||.|++||+|+.||+||+..+|+||.+|+|. +++++|+.|..|++|++|.+
T Consensus        18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~   86 (100)
T 2dn8_A           18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL   86 (100)
T ss_dssp             TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred             cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence            4799999999999       999999999999999999999999999999999999 99999999999999999863

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.51  E-value=4.9e-14  Score=103.39  Aligned_cols=69  Identities=36%  Similarity=0.670  Sum_probs=66.5

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+||+.|++.+       |++++||.|++||.|+.|+++++..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus         6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A            6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            4799999999999       89999999999999999999999999999999999999999999999999999985

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.51  E-value=6e-14  Score=104.24  Aligned_cols=71  Identities=34%  Similarity=0.545  Sum_probs=67.6

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +...|+||+.|++.+       |++++||.|++||+|+.|+.+|+..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus         7 ~~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A            7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            345799999999998       89999999999999999999999999999999999999999999999999999985

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.50  E-value=3.4e-14  Score=145.18  Aligned_cols=71  Identities=39%  Similarity=0.662  Sum_probs=68.2

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ....|+|||+|++++       |+|++||.|++||+|++||+|||+++|+||.+|+|++|++++|+.|..|++|++|+
T Consensus       611 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          611 TSKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             CCSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            345799999999999       99999999999999999999999999999999999999999999999999999985

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.50  E-value=3.9e-14  Score=110.72  Aligned_cols=64  Identities=23%  Similarity=0.273  Sum_probs=61.6

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus        17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~   80 (93)
T 1k8m_A           17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (93)
T ss_dssp             CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence            5799999       999999999999999999999999999999999999999999999999999999863

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4e-14  Score=111.92  Aligned_cols=64  Identities=27%  Similarity=0.467  Sum_probs=61.2

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCcc-CCCCeEEEEcC
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSV-SVDTPLLVIVP  286 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V-~~G~~L~~Iep  286 (286)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|++
T Consensus        20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~   84 (98)
T 2dnc_A           20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE   84 (98)
T ss_dssp             SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred             ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence            5789999       9999999999999999999999999999999999999999999999 99999999863

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.48  E-value=6.2e-14  Score=104.66  Aligned_cols=65  Identities=32%  Similarity=0.357  Sum_probs=62.6

Q ss_pred             CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +++.|++.+       |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|++|+
T Consensus        12 ~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A           12 GVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             SCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             CCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            568899999       99999999999999999999999999999999999999999999999999999986

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.48  E-value=6.7e-14  Score=112.61  Aligned_cols=63  Identities=29%  Similarity=0.395  Sum_probs=60.8

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV  285 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie  285 (286)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|++|.
T Consensus        20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~   83 (108)
T 2dne_A           20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV   83 (108)
T ss_dssp             CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred             ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence            5789999       99999999999999999999999999999999999999999999 899999999986

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.47  E-value=9.3e-14  Score=150.12  Aligned_cols=71  Identities=34%  Similarity=0.485  Sum_probs=68.3

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .+...|+|||+|+|++       |+|++||.|++||+||+||+|||+++|+||++|+|++|++++|+.|++|++|++|
T Consensus      1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            4556899999999999       9999999999999999999999999999999999999999999999999999987

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.46  E-value=1.3e-14  Score=110.83  Aligned_cols=69  Identities=25%  Similarity=0.329  Sum_probs=65.8

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .|++|..|++.+       |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|+.|.+
T Consensus         4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~   72 (85)
T 2k7v_A            4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   72 (85)
T ss_dssp             CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred             EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            578888899998       999999999999999999999999999999999999999999999999999999863

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.44  E-value=1.9e-13  Score=113.63  Aligned_cols=63  Identities=37%  Similarity=0.534  Sum_probs=60.5

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV  285 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie  285 (286)
                      ..|++.+       |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|++|+
T Consensus        40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~  103 (128)
T 1y8o_B           40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV  103 (128)
T ss_dssp             SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence            4689998       99999999999999999999999999999999999999999998 899999999986

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=107.03  Aligned_cols=71  Identities=31%  Similarity=0.548  Sum_probs=67.6

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ...|++|+.|++.+       |+|++||.|++||+|+.|+.+|+..+|+||.+|+|.+++++.|+.|..|++|++|.+
T Consensus        14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~   84 (99)
T 2ejm_A           14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE   84 (99)
T ss_dssp             CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred             ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence            34799999999999       999999999999999999999999999999999999999999999999999999863

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.44  E-value=2.8e-14  Score=111.52  Aligned_cols=70  Identities=34%  Similarity=0.592  Sum_probs=32.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|+||+.|++.+       |+|++||.|++||+|+.||+||+..+|+||.+|+|.++++++|+.|..|++|++|+
T Consensus        25 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           25 SSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             CCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             ceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            35799999999999       99999999999999999999999999999999999999999999999999999875

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.43  E-value=2.2e-13  Score=102.16  Aligned_cols=63  Identities=25%  Similarity=0.329  Sum_probs=60.9

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .|++.+       |+|++||.|++||+|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus        14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence            889998       999999999999999999999999999999999999999999999999999999863

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.42  E-value=2.4e-13  Score=146.05  Aligned_cols=73  Identities=27%  Similarity=0.417  Sum_probs=69.1

Q ss_pred             CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .+...|.|||.|++++       |+|++||.|++||+||+||+|||+++|+||.+|+|++|++++|+.|..|++|++|++
T Consensus      1075 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1075 SNPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             TCSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             CCCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            3446899999999999       999999999999999999999999999999999999999999999999999999974

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.41  E-value=6.1e-14  Score=105.64  Aligned_cols=68  Identities=18%  Similarity=0.259  Sum_probs=64.5

Q ss_pred             ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      +.+++.|++.+       |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|++|.+
T Consensus        10 ~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (81)
T 1gjx_A           10 IGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             CSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             CCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence            44678999999       999999999999999999999999999999999999999999999999999999864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.38  E-value=2.3e-14  Score=108.25  Aligned_cols=64  Identities=25%  Similarity=0.323  Sum_probs=61.2

Q ss_pred             cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..|++.+       |+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|..|++|++|++
T Consensus        15 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           15 ADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             SCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             ccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5788888       999999999999999999999999999999999999999999999999999998864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.37  E-value=6.8e-13  Score=99.58  Aligned_cols=61  Identities=18%  Similarity=0.356  Sum_probs=58.1

Q ss_pred             EEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          219 TFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       219 ~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ++.+       |+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|.+
T Consensus        14 ~i~~-------~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~   74 (79)
T 1iyu_A           14 EVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EEEE-------EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence            6666       999999999999999999999999999999999999999999999999999999864

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.23  E-value=1.7e-12  Score=109.02  Aligned_cols=69  Identities=26%  Similarity=0.329  Sum_probs=58.6

Q ss_pred             ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEE---EcCCCCccC---CCC-eEEEE
Q 023188          212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSVS---VDT-PLLVI  284 (286)
Q Consensus       212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I---lve~Gd~V~---~G~-~L~~I  284 (286)
                      +.+|+.|.+...      -+.++||.|++||+||+||+||++++|.||++|+|++|   ++++|+.|.   ||+ .|++|
T Consensus        39 ~a~~~lG~i~~V------~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i  112 (136)
T 1zko_A           39 HAQEQLGDVVYV------DLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKM  112 (136)
T ss_dssp             HHHHHHCSEEEE------ECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred             hhcccCCCcEEE------EecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEE
Confidence            455666654431      11299999999999999999999999999999999999   899999999   998 99998


Q ss_pred             cC
Q 023188          285 VP  286 (286)
Q Consensus       285 ep  286 (286)
                      ++
T Consensus       113 ~~  114 (136)
T 1zko_A          113 EI  114 (136)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=99.21  E-value=3.1e-12  Score=131.83  Aligned_cols=70  Identities=27%  Similarity=0.450  Sum_probs=67.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|||.|++++       |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus       649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            35799999999999       99999999999999999999999999999999999999999999999999999874

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=99.19  E-value=8.9e-12  Score=134.08  Aligned_cols=70  Identities=37%  Similarity=0.583  Sum_probs=61.0

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|||.|++++       |+|++||.|++||+|++||+|||.++|+|+.+|+|+++++++|+.|..|++|++|+
T Consensus      1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            35799999999999       99999999999999999999999999999999999999999999999999999986

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.16  E-value=3.1e-12  Score=124.65  Aligned_cols=62  Identities=31%  Similarity=0.534  Sum_probs=0.0

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++++       |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++|+.|..|++|+.|+
T Consensus        16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~   77 (428)
T 3dva_I           16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD   77 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence            477777       99999999999999999999999999999999999999999999999999999885

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=99.01  E-value=2.9e-10  Score=90.63  Aligned_cols=69  Identities=36%  Similarity=0.483  Sum_probs=63.1

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCee-----------------------------eeEecCCC
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM-----------------------------NEIEADQS  261 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~-----------------------------~eI~Ap~s  261 (286)
                      .|.+++.|++.+       ++|++||.|++||+|+.|+..+..                             ..|+||.+
T Consensus         3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~   75 (116)
T 2k32_A            3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD   75 (116)
T ss_dssp             EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred             EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence            588999999998       899999999999999999987544                             38999999


Q ss_pred             eEEEEEEcCCCCccCCC-CeEEEEcC
Q 023188          262 GTIAEILAEDGKSVSVD-TPLLVIVP  286 (286)
Q Consensus       262 GvV~~Ilve~Gd~V~~G-~~L~~Iep  286 (286)
                      |+|.++.++.|+.|..| ++|+.|.+
T Consensus        76 G~V~~~~~~~G~~v~~g~~~l~~i~~  101 (116)
T 2k32_A           76 GTIGDALVNIGDYVSASTTELVRVTN  101 (116)
T ss_dssp             EEECCCSCCTTCEECTTTSCCEEEEC
T ss_pred             EEEEEEECCCCCEEcCCCcEEEEEEC
Confidence            99999999999999999 99998853

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.76  E-value=4.7e-09  Score=87.48  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE---cCCCCccC---CCC-eEEEE
Q 023188          212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL---AEDGKSVS---VDT-PLLVI  284 (286)
Q Consensus       212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il---ve~Gd~V~---~G~-~L~~I  284 (286)
                      +..++.|.++..      -+.++||.|++||.||+||+||+.++|.||++|+|++|+   ..+.+.|.   ||+ -||+|
T Consensus        30 ~a~~~lG~i~~v------~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i  103 (131)
T 1hpc_A           30 HAQDHLGEVVFV------ELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKI  103 (131)
T ss_dssp             HHHHHHCSEEEE------ECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred             hhcccCCCceEE------EecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEE
Confidence            445667765541      123999999999999999999999999999999999997   45566774   777 88887


Q ss_pred             cC
Q 023188          285 VP  286 (286)
Q Consensus       285 ep  286 (286)
                      ++
T Consensus       104 ~~  105 (131)
T 1hpc_A          104 KP  105 (131)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.74  E-value=6e-09  Score=86.45  Aligned_cols=54  Identities=28%  Similarity=0.438  Sum_probs=48.9

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc---CCCCcc---CCCC-eEEEEcC
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSV---SVDT-PLLVIVP  286 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V---~~G~-~L~~Iep  286 (286)
                      ++||+|++||.||+||+||+.++|.||++|+|++|+.   .+.+.|   .||+ -||+|++
T Consensus        45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~  105 (128)
T 1onl_A           45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKP  105 (128)
T ss_dssp             CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred             CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEE
Confidence            9999999999999999999999999999999999964   577777   7887 8888863

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.73  E-value=7.2e-09  Score=85.97  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc---CCCCccC---CCC-eEEEE
Q 023188          212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA---EDGKSVS---VDT-PLLVI  284 (286)
Q Consensus       212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv---e~Gd~V~---~G~-~L~~I  284 (286)
                      +..++.|.+...      -+.++|+.|++||.||+||+||+.++|.||++|+|++|+.   .+.+.|.   ||+ -||+|
T Consensus        31 ~a~~~lG~i~~v------~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i  104 (128)
T 3a7l_A           31 HAQELLGDMVFV------DLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKI  104 (128)
T ss_dssp             HHHHHHCSEEEE------ECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred             HHhccCCceEEE------EecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEE
Confidence            445666654431      1239999999999999999999999999999999999974   6777787   887 88887


Q ss_pred             cC
Q 023188          285 VP  286 (286)
Q Consensus       285 ep  286 (286)
                      ++
T Consensus       105 ~~  106 (128)
T 3a7l_A          105 KA  106 (128)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.27  E-value=1.3e-06  Score=80.95  Aligned_cols=70  Identities=20%  Similarity=0.363  Sum_probs=62.8

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe------------------------------------
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------  252 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~------------------------------------  252 (286)
                      ...|.++..|++..       ++|++||.|++||+|+.|+...+                                    
T Consensus        57 ~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~  129 (359)
T 3lnn_A           57 LVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKR  129 (359)
T ss_dssp             EEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCT
T ss_pred             EEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            35799999999998       89999999999999999987543                                    


Q ss_pred             ----------------------------------------eeeEecCCCeEEEEEEcCCCCccCC-CCeEEEEc
Q 023188          253 ----------------------------------------MNEIEADQSGTIAEILAEDGKSVSV-DTPLLVIV  285 (286)
Q Consensus       253 ----------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~-G~~L~~Ie  285 (286)
                                                              ...|+||++|+|.++.++.|+.|.. |++|+.|.
T Consensus       130 ~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~  203 (359)
T 3lnn_A          130 DFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA  203 (359)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence                                                    3579999999999999999999999 99999874

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.18  E-value=2.6e-06  Score=81.57  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=61.5

Q ss_pred             CCccCCcceEEEccCCCCCCccc-cCCCEEecCCeEEEEEec--------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFV-KVGDKVQKGQVVCIIEAM--------------------------------------  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~V-kvGd~V~~Gq~L~~IEam--------------------------------------  250 (286)
                      ..|.++..|++.+       .+| ++||.|++||+|+.|+..                                      
T Consensus       122 ~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~  194 (413)
T 3ne5_B          122 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD  194 (413)
T ss_dssp             EEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred             EEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHH
Confidence            4689999999998       788 999999999999999842                                      


Q ss_pred             ----------CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          251 ----------KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       251 ----------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                .....|+||.+|+|.++.++.|+.|..|++|+.|.
T Consensus       195 ~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~  239 (413)
T 3ne5_B          195 IRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ  239 (413)
T ss_dssp             HHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred             HHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence                      12458999999999999999999999999999874

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.17  E-value=5.4e-07  Score=80.66  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK--------------------------------------  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK--------------------------------------  251 (286)
                      ..|.++..|++..       ++|++||.|++||+|+.|+...                                      
T Consensus        23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~   95 (277)
T 2f1m_A           23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI   95 (277)
T ss_dssp             EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred             EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4689999999998       8999999999999999998631                                      


Q ss_pred             ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023188          252 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV  285 (286)
Q Consensus       252 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~~L~~Ie  285 (286)
                                                       -...|+||.+|+|..+.++.|+.|..|  ++|+.|.
T Consensus        96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~  164 (277)
T 2f1m_A           96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ  164 (277)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence                                             124899999999999999999999999  6898874

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.17  E-value=1.9e-06  Score=79.18  Aligned_cols=71  Identities=23%  Similarity=0.395  Sum_probs=61.4

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe-----------------------------------
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL-----------------------------------  252 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~-----------------------------------  252 (286)
                      ....|.++..|++..       ++|++||.|++||+|+.|+....                                   
T Consensus        30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~  102 (341)
T 3fpp_A           30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ  102 (341)
T ss_dssp             SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999998       89999999999999999987411                                   


Q ss_pred             --------------------------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCe--
Q 023188          253 --------------------------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTP--  280 (286)
Q Consensus       253 --------------------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~--  280 (286)
                                                                        ...|+||++|+|.++.++.|+.|..|++  
T Consensus       103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~  182 (341)
T 3fpp_A          103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP  182 (341)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred             HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence                                                              1469999999999999999999999987  


Q ss_pred             -EEEEc
Q 023188          281 -LLVIV  285 (286)
Q Consensus       281 -L~~Ie  285 (286)
                       |+.|.
T Consensus       183 ~l~~i~  188 (341)
T 3fpp_A          183 NILTLA  188 (341)
T ss_dssp             CCEEEE
T ss_pred             eEEEEe
Confidence             88763

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.07  E-value=3.4e-06  Score=69.79  Aligned_cols=53  Identities=25%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCC---CCccC---CCC-eEEEEc
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED---GKSVS---VDT-PLLVIV  285 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~---Gd~V~---~G~-~L~~Ie  285 (286)
                      ++|+.|++||.+|.||++|+..+|.||++|+|+++...-   -+.|.   ||+ =|++|+
T Consensus        41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~  100 (125)
T 3klr_A           41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT  100 (125)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred             CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence            899999999999999999999999999999999996543   33333   554 366654

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.98  E-value=3e-06  Score=79.54  Aligned_cols=70  Identities=17%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe------------------------------------
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------  252 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~------------------------------------  252 (286)
                      ...|.++..|++..       ++|++||.|++||+|+.|+...+                                    
T Consensus        43 ~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~  115 (369)
T 1vf7_A           43 IAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYA  115 (369)
T ss_dssp             EEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred             EEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence            34699999999998       79999999999999999976321                                    


Q ss_pred             ---------------------eeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023188          253 ---------------------MNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV  285 (286)
Q Consensus       253 ---------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~~L~~Ie  285 (286)
                                           ...|+||++|+|.++.++.|+.|..|  ++|+.|.
T Consensus       116 ~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~  171 (369)
T 1vf7_A          116 DANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ  171 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence                                 25899999999999999999999995  8999874

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=97.87  E-value=4.4e-05  Score=71.59  Aligned_cols=67  Identities=21%  Similarity=0.165  Sum_probs=57.9

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ...|+||..|.|+.        +++.||.|++||+|+.|...    ....+|+||.+|+|....  ..-.|..|+.|+.|
T Consensus       257 ~~~v~A~~~Gl~~~--------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~I  326 (331)
T 3na6_A          257 DCYLFSEHDGLFEI--------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVI  326 (331)
T ss_dssp             CCCEECSSCEEEEE--------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEE
T ss_pred             cEEEeCCCCeEEEE--------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEE
Confidence            35799999998874        79999999999999999984    567899999999997765  45788999999987


Q ss_pred             c
Q 023188          285 V  285 (286)
Q Consensus       285 e  285 (286)
                      .
T Consensus       327 a  327 (331)
T 3na6_A          327 G  327 (331)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.79  E-value=2.2e-05  Score=66.40  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=37.8

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK  273 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd  273 (286)
                      ++|+.|++||.+|.||++|...+|.||++|+|+++.-+-.+
T Consensus        63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d  103 (143)
T 3mxu_A           63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE  103 (143)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence            89999999999999999999999999999999999865443

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.78  E-value=1.7e-05  Score=66.54  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=35.5

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      ++|++|++||.+|.||++|+..+|.||++|+|+++.-
T Consensus        58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~   94 (137)
T 3tzu_A           58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT   94 (137)
T ss_dssp             CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence            8999999999999999999999999999999999953

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.73  E-value=7.6e-05  Score=70.41  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      ...++|+..|.|.        +.++.||.|++||+|+.|+.+    ++..+|.|+.+|+|..+.  ....|..|+.|+.|
T Consensus       267 ~~~v~A~~~G~~~--------~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~i  336 (354)
T 3cdx_A          267 DAYVMAPRTGLFE--------PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVV  336 (354)
T ss_dssp             GGEEECSSCEEEE--------ESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEE
T ss_pred             cEEEECCCCEEEE--------EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEE
Confidence            3468999999655        478999999999999999984    778999999999998765  77889999999987


Q ss_pred             c
Q 023188          285 V  285 (286)
Q Consensus       285 e  285 (286)
                      .
T Consensus       337 a  337 (354)
T 3cdx_A          337 M  337 (354)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.66  E-value=3.6e-06  Score=78.01  Aligned_cols=70  Identities=19%  Similarity=0.442  Sum_probs=60.2

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe-----------------------------------
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL-----------------------------------  252 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~-----------------------------------  252 (286)
                      ....|.++..|++..       ++|++||.|++||+|+.|+....                                   
T Consensus        31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~  103 (369)
T 4dk0_A           31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL  103 (369)
T ss_dssp             SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445799999999988       79999999999999999986421                                   


Q ss_pred             --------------------------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCe--
Q 023188          253 --------------------------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTP--  280 (286)
Q Consensus       253 --------------------------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~--  280 (286)
                                                                        ...|+||++|+|.++.++.|+.|..|++  
T Consensus       104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~  183 (369)
T 4dk0_A          104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP  183 (369)
T ss_dssp             HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred             HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence                                                              1359999999999999999999999998  


Q ss_pred             -EEEE
Q 023188          281 -LLVI  284 (286)
Q Consensus       281 -L~~I  284 (286)
                       |+.|
T Consensus       184 ~l~~i  188 (369)
T 4dk0_A          184 TIIKV  188 (369)
T ss_dssp             CCBBC
T ss_pred             eEEEE
Confidence             6654

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=97.65  E-value=8.2e-05  Score=70.93  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe------cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA------MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL  282 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa------mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~  282 (286)
                      ...|+||..|.|+.        +|+.||.|++||+|+.|-.      .....+|+|+.+|+|....  ..-.|..|+.|+
T Consensus       290 ~~~v~A~~~Gl~~~--------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l~  359 (368)
T 3fmc_A          290 YRKFHAPKAGMVEY--------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTELY  359 (368)
T ss_dssp             EEEEECSSCEEEEE--------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEEE
T ss_pred             cEEEecCCCEEEEE--------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEE
Confidence            34689999999985        8999999999999999988      4577899999999996665  557899999999


Q ss_pred             EE
Q 023188          283 VI  284 (286)
Q Consensus       283 ~I  284 (286)
                      .|
T Consensus       360 ~i  361 (368)
T 3fmc_A          360 KV  361 (368)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.47  E-value=4.3e-05  Score=59.59  Aligned_cols=45  Identities=16%  Similarity=0.288  Sum_probs=42.2

Q ss_pred             CCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          241 GQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       241 Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      |..+|.++.++....|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le   49 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME   49 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence            566789999999999999999999999999999999999999986

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=97.44  E-value=0.00017  Score=61.94  Aligned_cols=65  Identities=20%  Similarity=0.332  Sum_probs=55.6

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI------------------  267 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~I------------------  267 (286)
                      ..|.||+.|++..        ..++.|.|-.    |+.+++...   ...|+||++|+|+.+                  
T Consensus        13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL   81 (162)
T 1ax3_A           13 EVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREIL   81 (162)
T ss_dssp             SSCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEE
T ss_pred             CEEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence            4699999999997        4677777666    888888776   458899999999988                  


Q ss_pred             -----------------EcCCCCccCCCCeEEEEc
Q 023188          268 -----------------LAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       268 -----------------lve~Gd~V~~G~~L~~Ie  285 (286)
                                       +++.||.|..|++|+++.
T Consensus        82 iHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (162)
T 1ax3_A           82 IHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  116 (162)
T ss_dssp             EECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred             EEECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence                             899999999999999874

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.41  E-value=0.00016  Score=61.93  Aligned_cols=37  Identities=24%  Similarity=0.412  Sum_probs=35.7

Q ss_pred             cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      ++|+.|++|+.++.||+.|...+|.||++|+|+++.-
T Consensus        68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            8999999999999999999999999999999999874

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=97.38  E-value=0.00019  Score=61.59  Aligned_cols=65  Identities=28%  Similarity=0.410  Sum_probs=55.6

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI------------------  267 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~I------------------  267 (286)
                      ..|.||+.|++..        .-++.|.|-.    |+.+++...+   ..|+||++|+|..+                  
T Consensus        13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL   81 (161)
T 1f3z_A           13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF   81 (161)
T ss_dssp             EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence            3599999999997        4467777666    8889888775   58899999999998                  


Q ss_pred             -----------------EcCCCCccCCCCeEEEEc
Q 023188          268 -----------------LAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       268 -----------------lve~Gd~V~~G~~L~~Ie  285 (286)
                                       +++.||.|..|++|+++.
T Consensus        82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d  116 (161)
T 1f3z_A           82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  116 (161)
T ss_dssp             EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence                             899999999999999874

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=97.35  E-value=0.00023  Score=60.66  Aligned_cols=65  Identities=23%  Similarity=0.319  Sum_probs=55.5

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE-------------------  266 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~-------------------  266 (286)
                      ..|.||+.|++..        .-++.|.|-.    |+.+++...+   ..|+||++|+|+.                   
T Consensus         8 ~~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evL   76 (154)
T 2gpr_A            8 LKVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL   76 (154)
T ss_dssp             EEEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred             CEEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEE
Confidence            3589999999997        4577777766    8889988875   6899999999998                   


Q ss_pred             ----------------EEcCCCCccCCCCeEEEEc
Q 023188          267 ----------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 ----------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                      ++|+.||.|..|++|+++.
T Consensus        77 iHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d  111 (154)
T 2gpr_A           77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence                            4899999999999999874

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=96.95  E-value=0.0021  Score=59.77  Aligned_cols=66  Identities=24%  Similarity=0.333  Sum_probs=55.5

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe----cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA----MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa----mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..++||..|.|..        +++.|+.|++||+|+.|-.    ++...+|+|+.+|+|.-..  ..-.|..|+.|+.|.
T Consensus       258 ~~~~a~~~G~~~~--------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia  327 (332)
T 2qj8_A          258 DQLKSPSPGIFEP--------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA  327 (332)
T ss_dssp             GEEECSSSEEEEE--------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred             eEEeCCCCeEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence            3688999998774        7899999999999999965    5678899999999996665  566889999998873

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.78  E-value=0.0012  Score=47.43  Aligned_cols=31  Identities=6%  Similarity=0.283  Sum_probs=29.2

Q ss_pred             eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~   31 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE   31 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence            4789999999999999999999999999986

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.63  E-value=0.0019  Score=46.30  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=30.2

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~   37 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE   37 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence            46899999999999999999999999999986

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=96.52  E-value=0.0023  Score=46.51  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=30.7

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|+.+|+|.++++++|+.|..|++|++|+
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~   40 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE   40 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence            357899999999999999999999999999986

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=96.32  E-value=0.002  Score=48.54  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.|+.+|+|.++++++|+.|..|++|+.|+
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie   37 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME   37 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence            46999999999999999999999999999986

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=95.80  E-value=0.0088  Score=43.64  Aligned_cols=33  Identities=18%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ..|+||..|++.+       .++++||.|..|+.|+.|++
T Consensus        45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~   77 (77)
T 2l5t_A           45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT   77 (77)
T ss_dssp             EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred             EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence            4799999999998       78999999999999999874

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.76  E-value=0.0095  Score=52.51  Aligned_cols=51  Identities=29%  Similarity=0.412  Sum_probs=40.5

Q ss_pred             CCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE-----------------------------cCCCCccC
Q 023188          226 PGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL-----------------------------AEDGKSVS  276 (286)
Q Consensus       226 ~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il-----------------------------ve~Gd~V~  276 (286)
                      -+...+|+.|+.|++||+||.=.      +|.++++|+|.+..                             +++|+.|.
T Consensus        19 yGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V~   92 (193)
T 2xha_A           19 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK   92 (193)
T ss_dssp             TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEEC
T ss_pred             CCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEEc
Confidence            35557899999999999999754      88899999886543                             67788888


Q ss_pred             CCCeEE
Q 023188          277 VDTPLL  282 (286)
Q Consensus       277 ~G~~L~  282 (286)
                      .|++|+
T Consensus        93 ~GdvLA   98 (193)
T 2xha_A           93 QGLPLS   98 (193)
T ss_dssp             TTSBSS
T ss_pred             CCCEEe
Confidence            887764

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=95.75  E-value=0.0062  Score=47.14  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.++.+|+|.++++++|+.|..|++|++|+
T Consensus        14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie   46 (99)
T 2ejm_A           14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI   46 (99)
T ss_dssp             CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred             ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence            457899999999999999999999999999986

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=95.71  E-value=0.01  Score=54.17  Aligned_cols=54  Identities=28%  Similarity=0.303  Sum_probs=40.5

Q ss_pred             ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus        11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~   64 (341)
T 3fpp_A           11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   64 (341)
T ss_dssp             --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred             EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence            3444433333445667765 35689999999999999999999999999999864

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=95.69  E-value=0.006  Score=46.86  Aligned_cols=33  Identities=15%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie   57 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE   57 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence            456899999999999999999999999999986

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=95.67  E-value=0.0068  Score=55.73  Aligned_cols=55  Identities=16%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             ccCCCEEecCCeEEEEEec-CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          232 VKVGDKVQKGQVVCIIEAM-KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       232 VkvGd~V~~Gq~L~~IEam-K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |+.|+.-..-..-+.|++. .-...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus        35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~   90 (359)
T 3lnn_A           35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS   90 (359)
T ss_dssp             CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred             eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence            3444444444566788875 567899999999999999999999999999999863

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=95.35  E-value=0.0086  Score=43.99  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             eeEecCCCeEEEEE-------EcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEI-------LAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~I-------lve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.|+..|+|.++       +++.|+.|..|++|++|+
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie   43 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVE   43 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEE
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEE
Confidence            46899999999998       999999999999999986

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=95.29  E-value=0.01  Score=43.50  Aligned_cols=34  Identities=35%  Similarity=0.562  Sum_probs=31.1

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ...|+||+.|++.+       .++++||.|..|+.|+.|+.
T Consensus        43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~   76 (80)
T 1qjo_A           43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred             eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence            45799999999998       78999999999999999975

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=95.05  E-value=0.02  Score=42.01  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|+||+.|++..       .++++|+.|..|+.|+.|+..
T Consensus        42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred             EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence            4799999999998       789999999999999998753

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=94.92  E-value=0.016  Score=54.09  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=36.1

Q ss_pred             eEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          243 VVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       243 ~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      ..+.|+.. -...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus        34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~   76 (369)
T 1vf7_A           34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   76 (369)
T ss_dssp             EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            34556654 35679999999999999999999999999999864

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=94.89  E-value=0.024  Score=53.97  Aligned_cols=50  Identities=28%  Similarity=0.370  Sum_probs=40.2

Q ss_pred             CCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE-----------------------------cCCCCccCC
Q 023188          227 GEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL-----------------------------AEDGKSVSV  277 (286)
Q Consensus       227 ~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il-----------------------------ve~Gd~V~~  277 (286)
                      +...+|+.|+.|++||+||.=.      +|.++++|+|.+..                             +++|+.|..
T Consensus        60 ga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~  133 (352)
T 2xhc_A           60 KAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQ  133 (352)
T ss_dssp             TCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECT
T ss_pred             CCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEcc
Confidence            4446799999999999999865      88888888876533                             778888888


Q ss_pred             CCeEE
Q 023188          278 DTPLL  282 (286)
Q Consensus       278 G~~L~  282 (286)
                      |++|+
T Consensus       134 G~vla  138 (352)
T 2xhc_A          134 GLPLS  138 (352)
T ss_dssp             TCBSB
T ss_pred             CcEEe
Confidence            88775

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=94.79  E-value=0.02  Score=41.94  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=30.6

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ...|+||..|++.+       .++++||.|..|+.|+.|+.
T Consensus        44 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           44 VMEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred             eEEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence            35799999999998       79999999999999999864

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=94.64  E-value=0.037  Score=41.57  Aligned_cols=26  Identities=23%  Similarity=0.196  Sum_probs=24.7

Q ss_pred             CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          260 QSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|.+++++.||.|..|++|+.|+
T Consensus        18 ~~G~v~~~~v~~Gd~V~~G~~l~~ie   43 (87)
T 3crk_C           18 TMGTVQRWEKKVGEKLSEGDLLAEIE   43 (87)
T ss_dssp             CEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             CcEEEEEEEcCCCCEEcCCCEEEEEE
Confidence            57999999999999999999999986

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=94.61  E-value=0.033  Score=42.66  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=24.7

Q ss_pred             CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          260 QSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|.++++++||.|..|++|++|+
T Consensus        17 ~~G~v~~~~v~~Gd~V~~G~~l~~ie   42 (93)
T 1k8m_A           17 REVTVKEWYVKEGDTVSQFDSICEVQ   42 (93)
T ss_dssp             CCEEEEEECCCTTCEECSSSCCEEEE
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEE
Confidence            58999999999999999999999986

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=94.49  E-value=0.028  Score=44.51  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=24.6

Q ss_pred             CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          260 QSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|.+++++.||.|..||+|++|+
T Consensus        20 ~~G~v~~~~v~~Gd~V~~G~~L~~iE   45 (108)
T 2dne_A           20 QAGTIARWEKKEGDKINEGDLIAEVE   45 (108)
T ss_dssp             CEEEEEECSSCTTCEECTTSEEEEEE
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEEE
Confidence            47999999999999999999999986

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=94.35  E-value=0.016  Score=53.31  Aligned_cols=54  Identities=24%  Similarity=0.252  Sum_probs=42.3

Q ss_pred             ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~   65 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS   65 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence            4444444444556677764 35589999999999999999999999999999863

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=94.28  E-value=0.031  Score=41.03  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=27.2

Q ss_pred             EecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          256 IEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       256 I~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      +-++..|+|.+++++.||.|..||+|+.|+
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie   39 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE   39 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence            345789999999999999999999999986

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=94.07  E-value=0.017  Score=43.25  Aligned_cols=36  Identities=33%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ....|+||+.|++.+       .++++||.|..|++|+.|+..
T Consensus        38 ~~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           38 ASMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             SEEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred             cEEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence            345799999999988       799999999999999999864

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=93.99  E-value=0.02  Score=42.27  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ...|+||..|++.+       .++++||.|..|+.|+.|+.
T Consensus        45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence            45799999999998       79999999999999998864

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=93.95  E-value=0.051  Score=51.68  Aligned_cols=54  Identities=20%  Similarity=0.213  Sum_probs=43.1

Q ss_pred             ccCCCEEecCCeEEEEEec-CeeeeEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188          232 VKVGDKVQKGQVVCIIEAM-KLMNEIEADQSGTIAEILA-EDGKSVSVDTPLLVIV  285 (286)
Q Consensus       232 VkvGd~V~~Gq~L~~IEam-K~~~eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie  285 (286)
                      |+.|+.-..=...+.|+.+ .-...|.++.+|+|.++++ ++||.|..||+|++|.
T Consensus        99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld  154 (413)
T 3ne5_B           99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT  154 (413)
T ss_dssp             CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred             EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence            4445544555566777753 4568899999999999998 9999999999999986

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=93.94  E-value=0.026  Score=47.85  Aligned_cols=73  Identities=11%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             CCccCCcceEEEccCC----------CCC------------------CccccCCCEEecCCeEEEEEecC---------e
Q 023188          210 PPLKCPMAGTFYRCPA----------PGE------------------PAFVKVGDKVQKGQVVCIIEAMK---------L  252 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~----------~~~------------------~~~VkvGd~V~~Gq~L~~IEamK---------~  252 (286)
                      ..|+||..|++....+          -+.                  ..+|++||+|++||.|+.+.-..         .
T Consensus        45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t  124 (154)
T 2gpr_A           45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS  124 (154)
T ss_dssp             SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence            4899999999876421          011                  15899999999999999886421         1


Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..-|.-   ..+..+....+..|..|+.|+.++
T Consensus       125 ~vvvtn---~~~~~~~~~~~~~v~~g~~~~~~~  154 (154)
T 2gpr_A          125 PIIFTN---NGGKTLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             EEEEEE---CSSCCCSCBCCEEECTTCEEEEEC
T ss_pred             EEEEEC---CCcceEEEccCceEcCCCEEEEeC
Confidence            122222   112223334456788899998764

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.79  E-value=0.043  Score=42.53  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=24.6

Q ss_pred             CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          260 QSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|.++++++||.|..||+|++|+
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie   45 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIE   45 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEE
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEE
Confidence            47999999999999999999999986

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=93.37  E-value=0.095  Score=45.21  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             ccccCCCEEecCCeEEEEEecCee-eeEecCCCeEEEEEEcCCC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEILAEDG  272 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK~~-~eI~Ap~sGvV~~Ilve~G  272 (286)
                      +.+.+|+.|.+||.|+.|.|.|-. .-|+||++|+|.-+.--.+
T Consensus       114 ~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~  157 (169)
T 3d4r_A          114 PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS  157 (169)
T ss_dssp             ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred             EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence            689999999999999999999976 5799999999987764433

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=93.16  E-value=0.088  Score=43.16  Aligned_cols=26  Identities=23%  Similarity=0.196  Sum_probs=24.5

Q ss_pred             CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          260 QSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|.+++++.||.|..||+|++|+
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iE   65 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIE   65 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEE
Confidence            46999999999999999999999986

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=93.06  E-value=0.11  Score=45.29  Aligned_cols=65  Identities=25%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEe----cCCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQ----KGQVVCIIEAMKLMNEIEADQSGTIAE-------------------  266 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~----~Gq~L~~IEamK~~~eI~Ap~sGvV~~-------------------  266 (286)
                      ..|.||+.|.+..        +-++-|.|=    =|+-++++-+.   ..|.||++|+|..                   
T Consensus        35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL  103 (183)
T 3our_B           35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF  103 (183)
T ss_dssp             EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence            4699999999986        344455442    27777776543   3788888887765                   


Q ss_pred             ----------------EEcCCCCccCCCCeEEEEc
Q 023188          267 ----------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 ----------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                      .+|++||.|..||+|+++.
T Consensus       104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD  138 (183)
T 3our_B          104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD  138 (183)
T ss_dssp             EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence                            3566777799999998863

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=92.97  E-value=0.04  Score=48.51  Aligned_cols=50  Identities=26%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             CCCcc--ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEE--------------------------E--EcCCCCccC
Q 023188          227 GEPAF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAE--------------------------I--LAEDGKSVS  276 (286)
Q Consensus       227 ~~~~~--VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~--------------------------I--lve~Gd~V~  276 (286)
                      +.-..  |+.|++|+.||+|+      -...|.|+.+|+|.-                          +  +|.+||.|.
T Consensus        78 gA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~  151 (193)
T 2xha_A           78 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK  151 (193)
T ss_dssp             GGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred             CCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEEC
Confidence            44466  89999999999998      345677888888741                          3  899999999


Q ss_pred             CCCeEE
Q 023188          277 VDTPLL  282 (286)
Q Consensus       277 ~G~~L~  282 (286)
                      .|+.|.
T Consensus       152 ~Ge~L~  157 (193)
T 2xha_A          152 QGEMLA  157 (193)
T ss_dssp             TTCEEE
T ss_pred             CCCCcc
Confidence            999986

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=92.86  E-value=0.12  Score=45.01  Aligned_cols=48  Identities=19%  Similarity=0.148  Sum_probs=40.1

Q ss_pred             CCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCcc
Q 023188          226 PGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSV  275 (286)
Q Consensus       226 ~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V  275 (286)
                      .+...+|+.|+.|++||+||..  ++-..+|.++++|+|.=-.+.+|..+
T Consensus        60 yGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~  107 (190)
T 2auk_A           60 YGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI  107 (190)
T ss_dssp             TTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred             CCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence            4556789999999999999965  68899999999999977777776543

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=92.79  E-value=0.058  Score=46.09  Aligned_cols=77  Identities=21%  Similarity=0.286  Sum_probs=45.6

Q ss_pred             CCCccCCcceEEEccCCC----------CC------------------CccccCCCEEecCCeEEEEEecC-------ee
Q 023188          209 HPPLKCPMAGTFYRCPAP----------GE------------------PAFVKVGDKVQKGQVVCIIEAMK-------LM  253 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~----------~~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~  253 (286)
                      ...|+||..|++....+-          +.                  ..+|++||+|++||.|+.+.-..       ..
T Consensus        49 ~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~  128 (162)
T 1ax3_A           49 EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLM  128 (162)
T ss_dssp             SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHHHGGGSSCCC
T ss_pred             CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECHHHHHhcCCCCE
Confidence            347999999998764221          11                  14899999999999999886422       22


Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~-~L~~Ie  285 (286)
                      ..|.-.-......+....+..|..|+ .|+.+.
T Consensus       129 t~vvvtn~~~~~~~~~~~~~~v~~g~~~i~~~~  161 (162)
T 1ax3_A          129 TPIVFTNLAEGETVSIKASGSVNREQEDIVKIE  161 (162)
T ss_dssp             EEEEESSGGGTCEEEECCCSEECTTCSSSEEEE
T ss_pred             EEEEEECCcccceEEeccCceEecCCEEEEEEe
Confidence            23322211112233333445577777 566553

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=91.69  E-value=0.17  Score=43.21  Aligned_cols=75  Identities=23%  Similarity=0.354  Sum_probs=44.1

Q ss_pred             CCccCCcceEEEccCCC----------CC------------------CccccCCCEEecCCeEEEEEecC-------eee
Q 023188          210 PPLKCPMAGTFYRCPAP----------GE------------------PAFVKVGDKVQKGQVVCIIEAMK-------LMN  254 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~----------~~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~~  254 (286)
                      ..|+||..|++....+-          +.                  ..+|++||+|++||.|+.+.-..       +..
T Consensus        50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t  129 (161)
T 1f3z_A           50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLT  129 (161)
T ss_dssp             SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCE
T ss_pred             CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECHHHHHhcCCCCeE
Confidence            47999999998754210          11                  13899999999999999886421       223


Q ss_pred             eEecCCCeEEEEEEcCCCCccCCC-CeEEEEc
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVD-TPLLVIV  285 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G-~~L~~Ie  285 (286)
                      .|.-.-...+..+....| .|..| +.|+.+.
T Consensus       130 ~vvvtn~~~~~~~~~~~~-~v~~~~~~~~~~~  160 (161)
T 1f3z_A          130 PVVISNMDEIKELIKLSG-SVTVGETPVIRIK  160 (161)
T ss_dssp             EEEESCGGGCSEEEECCS-EECTTTSEEEEEE
T ss_pred             EEEEECCcccceEEeccc-eEeeCCcEEEEEE
Confidence            333222222222322234 46555 4787764

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=91.37  E-value=0.21  Score=46.91  Aligned_cols=62  Identities=8%  Similarity=-0.014  Sum_probs=46.8

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      .|+++..|.+...+     ..++.|+.|++||+|+.+-.    .+|.++++|++.-  .. .-.|..|+.++.|
T Consensus       265 ~v~a~~~g~~~~~~-----~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i  326 (350)
T 2bco_A          265 TIVRLHDDFDFMFD-----DNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIV--FP-NRHVAIGQRAALM  326 (350)
T ss_dssp             EEECCSSSEEESSC-----TTCCBTEECCTTCEEEEETT----EEEECSSSSCEEE--SC-CTTCCTTSEEEEE
T ss_pred             EEEcCCCCeEEecc-----ccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEE--ec-CCCCCCCcEEEEE
Confidence            46778777665211     35799999999999999843    7899999998744  33 5788889977765

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=91.28  E-value=0.12  Score=40.31  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=30.8

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecC-CeEEEEEec
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG-QVVCIIEAM  250 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~G-q~L~~IEam  250 (286)
                      ...|+||+.|++..       .++++|+.|..| +.|+.|...
T Consensus        67 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~  102 (116)
T 2k32_A           67 HTEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNL  102 (116)
T ss_dssp             EEEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECS
T ss_pred             CCEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECC
Confidence            35799999999998       689999999999 999988664

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=91.24  E-value=0.15  Score=51.98  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.9

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|.||..|+|.+++|++||.|+.||+|+.||
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE  644 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE  644 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence            457999999999999999999999999999986

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=90.01  E-value=0.3  Score=42.65  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=18.3

Q ss_pred             ccccCCCEEecCCeEEEEEe
Q 023188          230 AFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ++|++||+|++||.|+.+.-
T Consensus       120 ~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          120 RIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             ECSCTTCEECTTCEEEEECH
T ss_pred             EEEeCcCEEcCCCEEEEECH
Confidence            88999999999999998854

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=88.22  E-value=0.36  Score=53.07  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             CCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEE
Q 023188          227 GEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIA  265 (286)
Q Consensus       227 ~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~  265 (286)
                      +...+|+.||.|++||+||..  +.-..+|.++++|+|.
T Consensus      1000 gs~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D         1000 GAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp             TCEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred             CCEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence            344789999999999999976  5677889999999874

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=88.03  E-value=0.29  Score=50.51  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE  681 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS  681 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence            46999999999999999999999999999986

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=87.31  E-value=0.41  Score=51.83  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=30.5

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence            57999999999999999999999999999986

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=86.83  E-value=0.45  Score=51.92  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|.||..|+|.+++|++||.|+.||+|+.||
T Consensus      1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A         1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp             EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred             cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence            46999999999999999999999999999986

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=86.52  E-value=0.16  Score=48.27  Aligned_cols=50  Identities=24%  Similarity=0.258  Sum_probs=34.8

Q ss_pred             CCCcc--ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEE------------------E----------EEcCCCCccC
Q 023188          227 GEPAF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIA------------------E----------ILAEDGKSVS  276 (286)
Q Consensus       227 ~~~~~--VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~------------------~----------Ilve~Gd~V~  276 (286)
                      ++-..  |+.|+.|+.||+|+      -...|.|+.+|+|.                  +          ++|.+||.|.
T Consensus       118 ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~  191 (352)
T 2xhc_A          118 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK  191 (352)
T ss_dssp             GGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred             CcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEe
Confidence            44456  99999999999887      22344455555543                  2          2367888899


Q ss_pred             CCCeEE
Q 023188          277 VDTPLL  282 (286)
Q Consensus       277 ~G~~L~  282 (286)
                      .|+.|.
T Consensus       192 ~G~~l~  197 (352)
T 2xhc_A          192 QGEMLA  197 (352)
T ss_dssp             TTCEEE
T ss_pred             CCCCcc
Confidence            999886

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=85.93  E-value=0.68  Score=40.74  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecC--CeEEEEEe
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKG--QVVCIIEA  249 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~G--q~L~~IEa  249 (286)
                      ...|+||+.|++..       .++++|+.|..|  +.|+.|..
T Consensus       130 ~~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~  165 (277)
T 2f1m_A          130 YTKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ  165 (277)
T ss_dssp             TTEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred             cCEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence            35899999999998       789999999999  58887754

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=84.08  E-value=0.69  Score=50.11  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=11.6

Q ss_pred             EecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          256 IEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       256 I~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      |.||..|+|.++++++||.|..||+|+.|
T Consensus      1098 v~ap~~G~v~~~~v~~Gd~V~~G~~l~~i 1126 (1165)
T 2qf7_A         1098 VGAPMPGVISRVFVSSGQAVNAGDVLVSI 1126 (1165)
T ss_dssp             EECSSCEEEEEECCSSCCCC---CEEEEE
T ss_pred             eeCCCCeEEEEEEcCCcCEeCCCCEEEEE
Confidence            44444444444444444444444444443

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=80.07  E-value=0.35  Score=46.84  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK  251 (286)
                      ..|.||..|++.+       ++|++||.|..||+|++|+...
T Consensus        46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~   80 (428)
T 3dva_I           46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAPG   80 (428)
T ss_dssp             ------------------------------------------
T ss_pred             EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence            4799999999998       8999999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	3e-20
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	5e-16
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-14
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	5e-14
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	7e-13
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-13
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-12
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	4e-12
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	9e-12
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	2e-09

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 80.8 bits (199), Expect = 3e-20
 Identities = 41/72 (56%), Positives = 53/72 (73%)

Query: 213 KCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG 272
           + PM GTFYR P+P   AF++VG KV  G  +CI+EAMK+MN+IEAD+SGT+  IL E G
Sbjct: 8   RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 67

Query: 273 KSVSVDTPLLVI 284
           + V  D PL+VI
Sbjct: 68  QPVEFDEPLVVI 79

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 69.2 bits (169), Expect = 5e-16
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 204 AKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGT 263
           A K+    +  P+AGT  +         VK GD V+ GQ V ++EAMK+  EI A   G 
Sbjct: 3   AGKAGEGEIPAPLAGTVSKI-------LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGK 55

Query: 264 IAEILAEDGKSVSVDTPLLVI 284
           + ++L ++  +V     L+ I
Sbjct: 56  VEKVLVKERDAVQGGQGLIKI 76

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           FVK GD+V +  V+C ++  K + EI +   G + EIL  +G   +V   L+ +
Sbjct: 22  FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 75

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (156), Expect = 5e-14
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
           +VK GD V +   +C +++ K    I +   G I ++         V  PL+ I
Sbjct: 25  YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
             K GD V + +V+  IE  K++ E+ A   G +  +L ++G +V+    L  +
Sbjct: 23  HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRL 76

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 61.0 bits (148), Expect = 7e-13
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271
           LK P  G             V VGD +     +  +E  K   ++ A+ +G + E+  + 
Sbjct: 5   LKVPDIGGHE--NVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62

Query: 272 GKSVSVDTPLLVI 284
           G  +S    ++V+
Sbjct: 63  GDKISEGGLIVVV 75

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
            VKVGDKV   Q +  +E  K   E+ A  +G + E+    G  V   + +++ 
Sbjct: 21  MVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIF 74

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 58.7 bits (142), Expect = 4e-12
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 222 RCPAPGEPA-----FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVS 276
           R P  G         VK GD ++  Q + ++E+ K   E+ + ++G +  +  + G  + 
Sbjct: 5   RVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLK 64

Query: 277 VDTPLLVIVP 286
               ++ + P
Sbjct: 65  EGDAIIELEP 74

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 57.5 bits (139), Expect = 9e-12
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284
             K G+ V++ +++  IE  K++ E+ A+  G IAEI+  +G +V     L  +
Sbjct: 22  HKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV 285
             KVG+K+ +G ++  IE  K     E  + G +A+IL  +G + V + TPL +IV
Sbjct: 26  EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.89
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.8
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.66
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.6
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.6
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.56
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.55
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.5
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.46
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.45
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.99
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.99
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.97
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.86
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	96.23
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	96.15
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.98
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	95.96
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.57
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	95.51
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	95.38
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	94.99
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	94.69
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	94.55
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	94.1
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	94.01
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	93.64
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	93.04
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	92.65
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	81.54
d1e2wa2	64	Cytochrome f, small domain {Chlamydomonas reinhard	80.89

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=6.3e-24  Score=162.05  Aligned_cols=76  Identities=54%  Similarity=0.960  Sum_probs=74.3

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|||+|+||+.|+|+.++||++||+|++||+||+||+|||+++|+|+.+|+|++|++++|+.|++|++||.|+
T Consensus         5 ~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_           5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999986

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.80  E-value=8.2e-20  Score=137.66  Aligned_cols=70  Identities=34%  Similarity=0.568  Sum_probs=67.5

Q ss_pred             CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188          208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI  284 (286)
Q Consensus       208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I  284 (286)
                      +...|+|||+|++++       |+|++||+|++||+||+||+||+.++|+||++|+|++|++++|+.|.+|++|++|
T Consensus         7 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_           7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             CCCEEECCCCcEEEE-------EEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            345799999999999       9999999999999999999999999999999999999999999999999999987

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.66  E-value=4.2e-17  Score=123.18  Aligned_cols=68  Identities=19%  Similarity=0.397  Sum_probs=64.0

Q ss_pred             ccCC---cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          212 LKCP---MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       212 I~AP---~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |+.|   +.|++.+       |+|++||.|++||+||+||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|++
T Consensus         4 i~~P~~g~~g~i~~-------~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   74 (79)
T d1iyua_           4 IRVPDIGGDGEVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP   74 (79)
T ss_dssp             EECCCCSSEEEEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred             EECCCCCCCEEEEE-------EEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEec
Confidence            5556   5679998       999999999999999999999999999999999999999999999999999999985

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=6.5e-16  Score=116.80  Aligned_cols=62  Identities=26%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             eEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          218 GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       218 G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      |++.+       |++++||.|++||+||+||+||+.++|+|+++|+|+++++++|+.|..|++|+.|+.
T Consensus        15 ~~v~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~   76 (80)
T d1qjoa_          15 VEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV   76 (80)
T ss_dssp             EEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred             EEEEE-------EEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            47888       999999999999999999999999999999999999999999999999999999863

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.60  E-value=1e-15  Score=115.66  Aligned_cols=63  Identities=29%  Similarity=0.389  Sum_probs=60.7

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      -|++++       |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+.|..|++|+.|+.
T Consensus        15 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          15 DGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             CEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             EEEEEE-------EEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            488888       999999999999999999999999999999999999999999999999999999874

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.3e-15  Score=115.73  Aligned_cols=62  Identities=24%  Similarity=0.290  Sum_probs=60.2

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++++       |+|++||.|++||+||+||+||+.++|+|+++|+|.+++++.|+.|..|++|+.|+
T Consensus        18 eg~i~~-------w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~   79 (87)
T d1k8ma_          18 EVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIE   79 (87)
T ss_dssp             CEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEE
T ss_pred             eEEEEE-------EEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence            488998       99999999999999999999999999999999999999999999999999999986

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.55  E-value=5.1e-16  Score=117.67  Aligned_cols=62  Identities=31%  Similarity=0.534  Sum_probs=60.0

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||.|++||+||+||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus        15 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie   76 (80)
T d1laba_          15 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD   76 (80)
T ss_dssp             SEEEEE-------CCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBB
T ss_pred             eEEEEE-------EEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            489998       99999999999999999999999999999999999999999999999999999885

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.50  E-value=1.9e-15  Score=114.46  Aligned_cols=63  Identities=19%  Similarity=0.297  Sum_probs=59.8

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP  286 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep  286 (286)
                      .|++++       |+|++||.|++||+||+||+||+.++|+|+.+|+|.+|++++|+.|..|++|+.|++
T Consensus        15 ~~~v~~-------w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~   77 (81)
T d1gjxa_          15 NVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA   77 (81)
T ss_dssp             SEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred             EEEEEE-------EEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEec
Confidence            367777       999999999999999999999999999999999999999999999999999999874

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.9e-14  Score=110.63  Aligned_cols=62  Identities=37%  Similarity=0.546  Sum_probs=59.0

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+ .|..|++|+.|.
T Consensus        19 eg~i~~-------w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1          19 MGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             EEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             EEEEEE-------EEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            488998       99999999999999999999999999999999999999999997 699999999883

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.7e-15  Score=114.75  Aligned_cols=62  Identities=26%  Similarity=0.340  Sum_probs=59.7

Q ss_pred             ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      -|++.+       |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus        16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~   77 (80)
T d1pmra_          16 DATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR   77 (80)
T ss_dssp             CEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred             EEEEEE-------EEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence            478888       99999999999999999999999999999999999999999999999999999886

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00045  Score=54.90  Aligned_cols=39  Identities=33%  Similarity=0.539  Sum_probs=36.8

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      +.++|+.|++|+.++.||+.|...+|.||.+|+|+++.-
T Consensus        42 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_          42 LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             CCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            569999999999999999999999999999999999874

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.99  E-value=0.00011  Score=61.09  Aligned_cols=65  Identities=18%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec---------------------------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM---------------------------------------  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam---------------------------------------  250 (286)
                      ..|.++..|.+.+       ++|++||.|++||+|+.|+..                                       
T Consensus        16 ~~V~s~v~G~V~~-------v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~   88 (237)
T d1vf7a_          16 AEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYAD   88 (237)
T ss_dssp             EEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             EEEEeecCEEEEE-------EECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhh
Confidence            3699999999998       899999999999999999763                                       


Q ss_pred             ------------------CeeeeEecCCCeEEEEEEcCCCCccCCCCeE
Q 023188          251 ------------------KLMNEIEADQSGTIAEILAEDGKSVSVDTPL  281 (286)
Q Consensus       251 ------------------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L  281 (286)
                                        --...|.||.+|+|..+.++.|+.+..|..+
T Consensus        89 ~~~~~~~a~~~l~~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~  137 (237)
T d1vf7a_          89 ANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQAN  137 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSS
T ss_pred             hhhhcchhHHHHHHHhhhhcccccccchhceeeeEEeccCcEEcCCcce
Confidence                              1134689999999999999999998887643

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.97  E-value=0.00049  Score=55.03  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=36.5

Q ss_pred             cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188          231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA  269 (286)
Q Consensus       231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv  269 (286)
                      +-++|+.|++|+.++.||+.|...+|.||.+|+|+++.-
T Consensus        43 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~   81 (131)
T d1hpca_          43 LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT   81 (131)
T ss_dssp             CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred             CCCCCccccCCCceEEEEeecccccccCCcchhheeehh
Confidence            458999999999999999999999999999999999864

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.86  E-value=0.00044  Score=50.28  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=30.8

Q ss_pred             eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ...|+||..|+|.++++++||.|..|++|+.|+
T Consensus         8 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE   40 (77)
T d1dcza_           8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE   40 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred             CCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEE
Confidence            347999999999999999999999999999986

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.23  E-value=0.0016  Score=47.37  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|+||..|++.+       +++++||.|..||+|+.||..
T Consensus        42 ~~i~a~~~G~v~~-------i~v~~G~~V~~G~~l~~ie~~   75 (79)
T d1iyua_          42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred             EEEEeccccEEEE-------EeeCCCCEECCCCEEEEEecC
Confidence            4699999999999       899999999999999999864

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0016  Score=47.82  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE  248 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE  248 (286)
                      ...|+||..|++.+       ++|+.||.|+.||+|+.||
T Consensus        48 ~~~i~a~~~G~v~~-------i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          48 MNQIEADKSGTVKA-------ILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             EEEEECSSCEEEEE-------ECSCTTCEECTTCEEEEEC
T ss_pred             cEEEEcCCCeEEEE-------EEeCCCCEECCCCEEEEEC
Confidence            34799999999999       8999999999999999986

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0019  Score=47.10  Aligned_cols=34  Identities=35%  Similarity=0.545  Sum_probs=31.4

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|.||..|++.+       .++++||.|+.||+||.||+.
T Consensus        44 ~~v~a~~~G~v~~-------i~v~~G~~V~~G~~l~~ie~e   77 (80)
T d1qjoa_          44 MEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEESC
T ss_pred             ceEeCCeeEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence            4699999999998       799999999999999999864

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0032  Score=46.75  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK  251 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK  251 (286)
                      ..|.||..|++.+       .++++||.|+.|++|+.|++..
T Consensus        48 ~~v~A~~~G~I~~-------i~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          48 VTITSRYDGVIKK-------LYYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             EECCCSSCEEEEE-------ECCCSSCEECTTSEEEEEECSC
T ss_pred             EEEEeCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCC
Confidence            4799999999998       7999999999999999998764

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.57  E-value=0.0039  Score=45.38  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ..|.||..|++.+       .++++||.|..|++|++|+.
T Consensus        45 ~ei~a~~~G~v~~-------i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          45 MEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred             EEEEeceeEEEEE-------EEcCCCCEECCCCEEEEEeC
Confidence            4699999999998       79999999999999999975

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0021  Score=47.04  Aligned_cols=34  Identities=12%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA  249 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa  249 (286)
                      ...|.||..|++.+       .++++||.|..||+||.||.
T Consensus        45 ~~ev~a~~~G~l~~-------i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred             EEEEeccCCEEEEE-------EEeCCCCEECCCCEEEEEeC
Confidence            35799999999998       79999999999999999874

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.38  E-value=0.0014  Score=47.99  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|.||..|++.+       +++++||.|+.||+||.||+.
T Consensus        45 ~ei~A~~~G~v~~-------i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_          45 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             EEECCSSCEECCC-------BSSCSSSEECSSSCSBCBBCS
T ss_pred             EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence            4799999999998       899999999999999999864

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.99  E-value=0.0029  Score=46.16  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM  250 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam  250 (286)
                      ..|.||..|++.+       +++++||.|..||+||.||..
T Consensus        45 ~~i~a~~~G~i~~-------i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_          45 MDVPAEVAGVVKE-------VKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             EEECCCCSSBBCC-------CCCCSSCEECSSSCCCEECCS
T ss_pred             EEEEeeeeEEEEE-------EEeCCCCEECCCCEEEEEecc
Confidence            4689999999998       899999999999999999863

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=94.69  E-value=0.013  Score=47.96  Aligned_cols=76  Identities=20%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             CCccCCcceEEEccCCCCCC----------------------------ccccCCCEEecCCeEEEEEec-------Ceee
Q 023188          210 PPLKCPMAGTFYRCPAPGEP----------------------------AFVKVGDKVQKGQVVCIIEAM-------KLMN  254 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~----------------------------~~VkvGd~V~~Gq~L~~IEam-------K~~~  254 (286)
                      ..|.||..|++....+-+..                            .+|+.||+|++||.|+.+.-.       .+..
T Consensus        47 ~~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t  126 (158)
T d1gpra_          47 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMT  126 (158)
T ss_dssp             CEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCE
T ss_pred             CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCcceEEEEcCCCEEcCCCEEEEeCHHHHHhhCCCCce
Confidence            47999999988654331111                            889999999999999998552       2233


Q ss_pred             eEecCCCeEEEEEEcCCCCccCCC-CeEEEEc
Q 023188          255 EIEADQSGTIAEILAEDGKSVSVD-TPLLVIV  285 (286)
Q Consensus       255 eI~Ap~sGvV~~Ilve~Gd~V~~G-~~L~~Ie  285 (286)
                      .|.-.-......+.+.....|..| +.|+.|+
T Consensus       127 ~vvvtn~~~~~~i~~~~~~~v~~g~~~i~~v~  158 (158)
T d1gpra_         127 PIVFTNLAEGETVSIKASGSVNREQEDIVKIE  158 (158)
T ss_dssp             EEEESSCCTTCCEEECCCSEECTTCBCCEEEC
T ss_pred             EEEEEeccccceEEEecCCcEEcCCceEEEEC
Confidence            333322222233444444455554 6788875

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=94.55  E-value=0.045  Score=44.58  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             CCCccCCcceEEEccCCCCCCccccCCCEE----ecCCeEEEEEecCeeeeEecCCCeEEEE------------------
Q 023188          209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKV----QKGQVVCIIEAMKLMNEIEADQSGTIAE------------------  266 (286)
Q Consensus       209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V----~~Gq~L~~IEamK~~~eI~Ap~sGvV~~------------------  266 (286)
                      ...|.||+.|++..        +-++.|.|    --|+-++++-+.   ..|.||++|+|..                  
T Consensus         9 ~~~i~aP~~G~vi~--------L~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~ev   77 (158)
T d1gpra_           9 EEVFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREI   77 (158)
T ss_dssp             CBCCBCSSSEEEEE--------GGGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CEEEEecCCcEEEE--------hhhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEE
Confidence            34799999999997        44555554    237777776554   4688888887764                  


Q ss_pred             -----------------EEcCCCCccCCCCeEEEEc
Q 023188          267 -----------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 -----------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                       ++++.||.|..||+|+++.
T Consensus        78 LiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D  113 (158)
T d1gpra_          78 LIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD  113 (158)
T ss_dssp             EEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEEeecccccCCcceEEEEcCCCEEcCCCEEEEeC
Confidence                             4677777899999998863

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=94.10  E-value=0.017  Score=47.10  Aligned_cols=53  Identities=9%  Similarity=0.102  Sum_probs=33.8

Q ss_pred             ccccCCCEEecCCeEEEEEecC---------eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMK---------LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK---------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      .+|++||+|++||.|+.+.-..         ...-+.-....   .+.......|..|++|+.|+
T Consensus        93 ~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd~i~~ik  154 (154)
T d2gpra_          93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGDVVAILK  154 (154)
T ss_dssp             ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTCEEEEEC
T ss_pred             EEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCCEEEEeC
Confidence            8899999999999999985421         11222221111   22223334699999999875

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.038  Score=44.65  Aligned_cols=64  Identities=27%  Similarity=0.397  Sum_probs=46.3

Q ss_pred             CccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE--------------------
Q 023188          211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE--------------------  266 (286)
Q Consensus       211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~--------------------  266 (286)
                      .|.||+.|++..        +-++-|.|=.    |+-++++-+.   ..|.||++|+|..                    
T Consensus         3 ~i~aP~~G~vi~--------L~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLI   71 (150)
T d2f3ga_           3 EIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV   71 (150)
T ss_dssp             EEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCceEEE--------cccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEECCCCCEEEEEeCCceEEEE
Confidence            588999999987        4455554433    7777776554   4688888887774                    


Q ss_pred             ---------------EEcCCCCccCCCCeEEEEc
Q 023188          267 ---------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 ---------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                     .+++.||.|..||+|+++.
T Consensus        72 HiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  105 (150)
T d2f3ga_          72 HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD  105 (150)
T ss_dssp             ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred             EEccchhhcCCcceEEEecCCCEECCCCEEEEEc
Confidence                           4566677899999998863

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.036  Score=44.86  Aligned_cols=55  Identities=20%  Similarity=0.364  Sum_probs=37.3

Q ss_pred             ccccCCCEEecCCeEEEEEec-------CeeeeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023188          230 AFVKVGDKVQKGQVVCIIEAM-------KLMNEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV  285 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEam-------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~-~L~~Ie  285 (286)
                      .+|++||+|++||.|+.+.-.       .+...|.-.-...+..+....|+ |..|+ +|++|.
T Consensus        87 ~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g~-v~~g~~~i~~i~  149 (150)
T d2f3ga_          87 RIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGS-VTVGETPVIRIK  149 (150)
T ss_dssp             ECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCSE-ECTTTSEEEEEE
T ss_pred             EEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcHhcceeeecCCc-EeeCCcEEEEEE
Confidence            889999999999999998542       22333333333444456666774 77775 788874

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=93.04  E-value=0.079  Score=42.92  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=45.8

Q ss_pred             CCccCCcceEEEccCCCCCCccccCCCEE----ecCCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188          210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKV----QKGQVVCIIEAMKLMNEIEADQSGTIAE-------------------  266 (286)
Q Consensus       210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V----~~Gq~L~~IEamK~~~eI~Ap~sGvV~~-------------------  266 (286)
                      ..|.||+.|++...        -++-|.|    --|+-+++.-+.   ..|.||++|+|..                   
T Consensus         8 ~~i~aP~~G~vi~l--------~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~eiL   76 (154)
T d2gpra_           8 LKVLAPCDGTIITL--------DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEIL   76 (154)
T ss_dssp             EEEECSSSEEEECG--------GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEE
T ss_pred             eEEEecCCceEEEc--------ccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCCEEE
Confidence            46899999999973        3444443    236777766543   4677888887763                   


Q ss_pred             ----------------EEcCCCCccCCCCeEEEEc
Q 023188          267 ----------------ILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       267 ----------------Ilve~Gd~V~~G~~L~~Ie  285 (286)
                                      .+++.||.|..||+|+++.
T Consensus        77 IHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D  111 (154)
T d2gpra_          77 LHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD  111 (154)
T ss_dssp             EECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred             EEEcccccccCCceeEEEecCCCEEcCCCEEEEEc
Confidence                            4667777899999998863

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.037  Score=41.86  Aligned_cols=26  Identities=23%  Similarity=0.196  Sum_probs=24.5

Q ss_pred             CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188          260 QSGTIAEILAEDGKSVSVDTPLLVIV  285 (286)
Q Consensus       260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie  285 (286)
                      ..|+|.+++++.||.|..|++|+.|+
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vE   43 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIE   43 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEE
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEE
Confidence            46999999999999999999999986

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.54  E-value=0.26  Score=36.88  Aligned_cols=22  Identities=36%  Similarity=0.647  Sum_probs=18.8

Q ss_pred             ccccCCCEEecCCeEEEEEecC
Q 023188          230 AFVKVGDKVQKGQVVCIIEAMK  251 (286)
Q Consensus       230 ~~VkvGd~V~~Gq~L~~IEamK  251 (286)
                      .+++.||.|++||+|+.|=+.+
T Consensus        50 l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          50 LHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             ESCCTTCEECTTCEEEEEEESS
T ss_pred             EeccCCCEEcCCCeEEEEEcCC
Confidence            4689999999999999996643

>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=80.89  E-value=0.48  Score=32.59  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             ccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-eeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188          212 LKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-LMNEIEADQSGTIAEILAEDGKSVSVDTPLL  282 (286)
Q Consensus       212 I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~  282 (286)
                      ..|+..|++.+         +..++. ++|....+|+... -..+..-|..=   +++|++||.|+.||+|-
T Consensus         3 ~na~~aG~Vs~---------I~~~~~-~kg~~~I~I~~~dGe~~~y~Ip~g~---~l~V~eGd~V~~G~~LT   61 (64)
T d1e2wa2           3 YNASAAGKIVA---------ITALSE-KKGGFEVSIEKANGEVVVDKIPAGP---DLIVKEGQTVQADQPLT   61 (64)
T ss_dssp             CBCSSCEEEEE---------EEESSS-SSCCEEEEEECTTSCEEEEEECSSS---CBCCCTTCEECTTCBCB
T ss_pred             ecCcCCEEEEE---------EEeecc-cCCcEEEEEECCCCCEEEEEcCCCC---eEEECCCCEEeCCCccc
Confidence            34777787765         121111 2444444555433 23333444433   56788999999998874