Citrus Sinensis ID: 023206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrrpswnksQAIQQVICLKTLLETTTDTEATEARRKlysvpshsavtvketcepapcrrqdapmpdfsgdsssrlaadsesisprtTVAAKEAVGQMTIFYsgkvnvyddmpSEKAQAILQLAasplplsqkapsdgttglqsvpchlqtaginvgpsspvifptlqTVKVVEncqlpweesnishedsfdgptsrKASVQRYREKRKDRFknkrkiampssssldvylnrwvgdqfaneqlnpsdvcstlqsrpsqtspgcgvvenlanvsnlpvdpndkdvten
Flexible Loop (DISEMBL)
mrrpswnksqaIQQVICLKTLLETTTDTEATEARRklysvpshsavtvketcepapcrrqdapMPDFSGDSSSrlaadsesisprttvaakeavgQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWeesnishedsfdgptsrkasvqryrekrkdrfknkrkiampssssldvYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVenlanvsnlpvdpndkdvten
Low Complexity Region (SEG)
MRRPSWNKSQAIQQVICLKtlletttdteateaRRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN
Disordered region (IsUnstruct)
**********AIQQVICLKTLLETT******************************************************************EAVGQMTIFYSGKVNVYDD*********************************VPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWE********************************************LDVYLNRWVGDQFA************************************************
Disordered Region (DISOPRED)
*R**SWNKSQAIQQVICLKT******************************************************************************IFYSGKVNVYDDMPSEKAQAILQL********************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********AIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMP********************TTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLS**********LQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNI****************************NKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPS***************GCGVVENLANVSNLPVDP********
Disordered Region (DISPRO)
*****WNKSQAIQQVICLKTLLET********************************************************************AVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASP**************************************************************SFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVY**********************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q7XA73	313	Protein TIFY 4A OS=Arabid	yes	no	0.730	0.667	0.390	1e-34
Q8GY55	315	Protein TIFY 4B OS=Arabid	no	no	0.730	0.663	0.393	7e-34
Q9C5K8	187	Protein TIFY 3B OS=Arabid	no	no	0.332	0.508	0.312	2e-07
Q9M246	238	Protein TIFY 3A OS=Arabid	no	no	0.297	0.357	0.301	2e-05
Q9LVI4	352	Protein TIFY 6B OS=Arabid	no	no	0.447	0.363	0.298	0.0001
Q58G47	310	Protein TIFY 6A OS=Arabid	no	no	0.426	0.393	0.290	0.0002

>sp|Q7XA73|TIF4A_ARATH Protein TIFY 4A OS=Arabidopsis thaliana GN=TIFY4A PE=1 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 131/251 (52%), Gaps = 42/251 (16%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEP------ 54
           MRRPSWNKSQAIQQV+ LK L E   D+ A   R+ L S P +         EP      
Sbjct: 41  MRRPSWNKSQAIQQVLSLKALYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEA 100

Query: 55  ----------APCRRQDAPM-PDFSGDSSSRLA---ADSESISPRTTVAAKEAVGQMTIF 100
                       C R D+P   +FSG S   ++       +ISPR+     E VGQMTIF
Sbjct: 101 CGRVSYPEDNGACHRMDSPRSAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIF 160

Query: 101 YSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSP 160
           YSGKVNVYD +P EKA++I+  AA+P+ L    P +G                 +  SS 
Sbjct: 161 YSGKVNVYDGIPPEKARSIMHFAANPIDL----PENG-----------------IFASSR 199

Query: 161 VIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAM 219
           +I   +   K++E  Q   E++N S +   +G  +RK S+QRYREKRKDR F   +K   
Sbjct: 200 MISKLISKEKMMELPQKGLEKANSSRDSGMEGQANRKVSLQRYREKRKDRKFSKAKKCPG 259

Query: 220 PSSSSLDVYLN 230
            +SSSL+++LN
Sbjct: 260 VASSSLEMFLN 270

Regulates the arrest of dispersed meristematic cells during lamina development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY55|TIF4B_ARATH Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 133/254 (52%), Gaps = 45/254 (17%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEP------ 54
           MRRPSWNKSQAIQQV+ LK L E   D+ A   R+ L S P +         EP      
Sbjct: 41  MRRPSWNKSQAIQQVLSLKALYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEA 100

Query: 55  ----------APCRRQDAPM-PDFSGDSSSRLAADSES-----ISPRTTVAAKEAVGQMT 98
                       C R+D+P   +FSG SS +  AD +S     +SPR+       VGQMT
Sbjct: 101 CGRIPLQEDDGACHRRDSPRSAEFSG-SSGQFVADKDSHKTVSVSPRSPAETNAVVGQMT 159

Query: 99  IFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPS 158
           IFYSGKVNVYD +P EKA++I+  AA+P+ L    P +G                 +  S
Sbjct: 160 IFYSGKVNVYDGVPPEKARSIMHFAANPIDL----PENG-----------------IFAS 198

Query: 159 SPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKD-RFKNKRKI 217
           S +I   +   K+VE  Q   E++  S +   +G  +RK S+QRY EKRKD RF   +K 
Sbjct: 199 SRMISKPMSKEKMVELPQYGLEKAPASRDSDVEGQANRKVSLQRYLEKRKDRRFSKTKKA 258

Query: 218 AMPSSSSLDVYLNR 231
              +SSSL+++LNR
Sbjct: 259 PGVASSSLEMFLNR 272

Regulates the arrest of dispersed meristematic cells during lamina development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5K8|TIF3B_ARATH Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 33/128 (25%)

Query: 96  QMTIFYSGKVNVYDDMPSEKAQAILQLAASPL---------PLSQKAPSDGTTGLQSVPC 146
           Q+TIF+ G V V+D +PSEK Q IL++AA  +         P+S  A       L   P 
Sbjct: 57  QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSISPVSSPA-------LNRAPS 109

Query: 147 HLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREK 206
              T+ +    + P  FP    ++ +  C+            + D P +R+ S+QR+ EK
Sbjct: 110 FSSTSNVASPAAQP--FP----IQPISFCR-----------STADLPIARRHSLQRFLEK 152

Query: 207 RKDRFKNK 214
           R+DR  NK
Sbjct: 153 RRDRLVNK 160

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M246|TIF3A_ARATH Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 31/116 (26%)

Query: 96  QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 155
           Q+TI + G  +V+D +P+EK Q IL +AA+       A +  T  L S+   L+ A    
Sbjct: 131 QLTIIFGGSFSVFDGIPAEKVQEILHIAAA-------AKATETINLTSINPALKRA---- 179

Query: 156 GPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRF 211
                + F    TV  V                  D P +R+ S+QR+ EKR+ RF
Sbjct: 180 -----ISFSNASTVACVSTA---------------DVPIARRRSLQRFFEKRRHRF 215

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVI4|TIF6B_ARATH Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 65/161 (40%), Gaps = 33/161 (20%)

Query: 96  QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 155
           Q+TIFY+G V VYDD+  EKA+AI+ LA +   + Q   S   T  Q V  H   A ++ 
Sbjct: 178 QLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVF-SPPQTHQQVV--HHTRASVDS 234

Query: 156 GPSSPVIFPT--------------LQTVKVVE----------------NCQLPWEESNIS 185
               P   PT              L   K                   NC +P   S   
Sbjct: 235 SAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNINCPVPVSCSTNV 294

Query: 186 HEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 226
              +   P +RKAS+ R+ EKRK+R  +     +   SS D
Sbjct: 295 MAPTVALPLARKASLARFLEKRKERVTSVSPYCLDKKSSTD 335

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. Acts as a negative regulator of MYC2 function. Feed-back regulated by MYC2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58G47|TIF6A_ARATH Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A PE=1 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 33/155 (21%)

Query: 96  QMTIFYSGKVNVYDDMPSEKAQAILQLAAS---PLPLSQKAPSDGTT------------- 139
           Q+TIFY+G V VY D+  EKAQAI+ LA +     P+SQ  P                  
Sbjct: 147 QLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHAKPVSQPKPQKLVHHSLPTTDPPTMPP 206

Query: 140 ----GLQSVPCHLQTAGIN----VGPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFD 191
                +  +    +++G N    +GP+      T  ++    N Q     +  S   +  
Sbjct: 207 SFLPSISYIVSETRSSGSNGVTGLGPTK-----TKASLASTRNNQ----TAAFSMAPTVG 257

Query: 192 GPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 226
            P +RKAS+ R+ EKRK+R  N     + + SS+D
Sbjct: 258 LPQTRKASLARFLEKRKERVINVSPYYVDNKSSID 292

Repressor of jasmonate responses negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
296084479	341	unnamed protein product [Vitis vinifera]	1.0	0.838	0.568	1e-80
224082684	375	predicted protein [Populus trichocarpa]	0.972	0.741	0.504	3e-66
225437146	252	PREDICTED: protein TIFY 4B-like [Vitis v	0.671	0.761	0.583	1e-51
255559839	270	conserved hypothetical protein [Ricinus	0.580	0.614	0.520	8e-39
297737106	325	unnamed protein product [Vitis vinifera]	0.919	0.809	0.405	2e-38
255552057	335	conserved hypothetical protein [Ricinus	0.825	0.704	0.426	4e-38
359477363	393	PREDICTED: protein TIFY 4B-like [Vitis v	0.989	0.720	0.373	4e-37
449455306	336	PREDICTED: protein TIFY 4B-like [Cucumis	0.972	0.827	0.384	6e-34
389986115	244	jasmonate ZIM domain protein k.1 [Nicoti	0.664	0.778	0.450	7e-34
30682959	313	protein TIFY 4A [Arabidopsis thaliana] g	0.730	0.667	0.390	8e-33

>gi|296084479|emb|CBI25038.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/301 (56%), Positives = 202/301 (67%), Gaps = 15/301 (4%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDT---EATEARRKLYSVPSHSAVTVKETC----- 52
           MRRPSWNKSQAIQQVI LKTLLETT+D    +A  AR+KL+  P  +   V  T      
Sbjct: 41  MRRPSWNKSQAIQQVISLKTLLETTSDCGGGDAAGARKKLFVPPPENQHRVPLTRISVSD 100

Query: 53  -EPAPCRRQDAPMPDFSGDSSSRL--AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYD 109
            E  P +RQD P PD SGD+ + L  AADS+SI PRT  A     GQMTIFY GKVNVYD
Sbjct: 101 EESVPYQRQDPPKPDISGDTEAHLLAAADSDSIPPRTLDAMNGPAGQMTIFYCGKVNVYD 160

Query: 110 DMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSP-VIFPTLQT 168
           D+  +KA+AI+QLAAS L L Q+AP DGT  L    CHL+ A + +GPSSP VI+PTLQT
Sbjct: 161 DVSMDKAKAIMQLAASSLHLHQEAPCDGTPELLPFSCHLRAASVKIGPSSPTVIYPTLQT 220

Query: 169 VKVVENCQLPWEESNISHEDSF---DGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSL 225
           VK+ ENCQL  EESNI  ED+    + PTSRKASVQRY EKRKDRFK+K++  MPSS+ L
Sbjct: 221 VKMTENCQLHREESNIFREDNHPAAEVPTSRKASVQRYLEKRKDRFKSKKRGGMPSSAGL 280

Query: 226 DVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTE 285
           D+YLN  VGDQ  N+Q N SD CS    R       C +VEN+   +NL  D N KDV E
Sbjct: 281 DIYLNHRVGDQIPNDQSNQSDACSLSHCRAHHIPTPCSLVENMTKHTNLSADLNIKDVQE 340

Query: 286 N 286
           +
Sbjct: 341 H 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082684|ref|XP_002306794.1| predicted protein [Populus trichocarpa] gi|222856243|gb|EEE93790.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/313 (50%), Positives = 198/313 (63%), Gaps = 35/313 (11%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLY------------------SVPS 42
           MRRPSWNKSQAIQQVI LKTLLE T +TE+   RR+LY                  +VP 
Sbjct: 41  MRRPSWNKSQAIQQVISLKTLLEATPETES--PRRRLYIPRPPPHPPDNTPRVRFSAVPP 98

Query: 43  HSAVTVKETC----------EPAPCRRQDAPMPDFSGDSSSRLAA---DSESISPRTTVA 89
           +S+V+ +             EP PCR+ D P PD   D    + A   ++ S+SPRTT  
Sbjct: 99  NSSVSERGASAETPISVPAEEPVPCRQHDPPNPDDPADPLPPVHAAVTENASVSPRTTGM 158

Query: 90  AKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQ 149
           A+E+ GQMTIFY GKVNVYDD+P +KAQAI+ LAASP    Q A SD    L+ + C L 
Sbjct: 159 AEESAGQMTIFYCGKVNVYDDVPGDKAQAIMHLAASPFAPPQDASSDVIPTLRPLQCQLD 218

Query: 150 TAGINVGPSSPVI-FPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRK 208
           T G+   P+S V  FPTL TVK  ++ QL WEESNI+ ED+ +G TSRKAS+QRY EK+K
Sbjct: 219 TPGVKAAPNSIVANFPTLPTVKGADSGQLLWEESNIAREDNLEGSTSRKASLQRYFEKKK 278

Query: 209 DRFKNKRKIAMPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENL 268
           DRFKNKRK+A+P S+SLDV+L+  VGDQ +N+  N +D CS  Q RP QT   C  V+N+
Sbjct: 279 DRFKNKRKVAVP-SASLDVFLSHLVGDQISNDHWNLNDACSPSQPRPPQTPNRCNSVDNV 337

Query: 269 ANVSNLPVDPNDK 281
           A    L  D N+K
Sbjct: 338 AKNGILKADLNNK 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437146|ref|XP_002274568.1| PREDICTED: protein TIFY 4B-like [Vitis vinifera]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/204 (58%), Positives = 139/204 (68%), Gaps = 12/204 (5%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDT---EATEARRKLYSVPSHSAVTVKETC----- 52
           MRRPSWNKSQAIQQVI LKTLLETT+D    +A  AR+KL+  P  +   V  T      
Sbjct: 41  MRRPSWNKSQAIQQVISLKTLLETTSDCGGGDAAGARKKLFVPPPENQHRVPLTRISVSD 100

Query: 53  -EPAPCRRQDAPMPDFSGDSSSRL--AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYD 109
            E  P +RQD P PD SGD+ + L  AADS+SI PRT  A     GQMTIFY GKVNVYD
Sbjct: 101 EESVPYQRQDPPKPDISGDTEAHLLAAADSDSIPPRTLDAMNGPAGQMTIFYCGKVNVYD 160

Query: 110 DMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSP-VIFPTLQT 168
           D+  +KA+AI+QLAAS L L Q+AP DGT  L    CHL+ A + +GPSSP VI+PTLQT
Sbjct: 161 DVSMDKAKAIMQLAASSLHLHQEAPCDGTPELLPFSCHLRAASVKIGPSSPTVIYPTLQT 220

Query: 169 VKVVENCQLPWEESNISHEDSFDG 192
           VK+ ENCQL  EESNI  ED+  G
Sbjct: 221 VKMTENCQLHREESNIFREDNHPG 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559839|ref|XP_002520938.1| conserved hypothetical protein [Ricinus communis] gi|223539775|gb|EEF41355.1| conserved hypothetical protein [Ricinus communis]

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 113 SEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVV 172
           S+ AQAI+QLAA PL LS    SD    L+ +P  L+  G+    S   ++PT QT KV 
Sbjct: 101 SDHAQAIMQLAACPLSLSGDTSSDAIPALRPIPSQLEAPGVKTSLSPMFVYPTQQTGKVA 160

Query: 173 ENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLNRW 232
           E+C LP EESN+ HED+ +G TSRKASVQRY EKRKDRFKNKRK+AMPSS   D++LN  
Sbjct: 161 EHCHLPKEESNLFHEDNLEGRTSRKASVQRYLEKRKDRFKNKRKVAMPSS---DIHLNHC 217

Query: 233 VGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDK 281
           V D+F+N+Q N ++ C   Q RPSQT   C  V      +NL  D N K
Sbjct: 218 VRDEFSNDQWNLTEACFATQPRPSQTPIQCSTVAYTEKHTNLSADLNGK 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737106|emb|CBI26307.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 158/308 (51%), Gaps = 45/308 (14%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARR--------KLYSVPSHSAVTVKETC 52
           MRRPSWNKSQAIQQVI LK+LLET+  + A   R+         L  V S+SA + KE  
Sbjct: 41  MRRPSWNKSQAIQQVISLKSLLETSEGSGAGVLRKITDSPPAENLPPVTSNSADSGKELS 100

Query: 53  ----------EPAPCRRQDA-PMPDFSGDSSSRL-AADSESISPRTTVAAKEAVGQMTIF 100
                     E  P   +D  P    SG+ +SR   AD++   PR+  A    VGQMTIF
Sbjct: 101 ADIQISVSADELVPLPPKDHHPESTPSGELASRPPEADTKHTCPRSPGATNCLVGQMTIF 160

Query: 101 YSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVG--PS 158
           Y GKVNVYD +P +KAQAI+ LAASP  L    P  G   L S PCHL TA +  G  P 
Sbjct: 161 YCGKVNVYDGVPDDKAQAIMHLAASPFHLPSDDPFSGAAMLCSSPCHLHTANVKHGHIPP 220

Query: 159 SPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIA 218
             ++  T+QT                      +G   RK S+QRY EKRKDRFK+++KI 
Sbjct: 221 RAMVSQTMQT--------------------DVEGQVDRKLSLQRYFEKRKDRFKSRKKIG 260

Query: 219 MPSSSSLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDP 278
           +P S SL++Y+N     Q +N Q + S   S  Q   S T   C   +N        VD 
Sbjct: 261 LP-SGSLEMYVNHQARTQPSNGQSSRSGTSSPPQHGLSHTL--CSSADNHTKNFTPFVDL 317

Query: 279 NDKDVTEN 286
           N KD+ E+
Sbjct: 318 NSKDIQES 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552057|ref|XP_002517073.1| conserved hypothetical protein [Ricinus communis] gi|223543708|gb|EEF45236.1| conserved hypothetical protein [Ricinus communis]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 145/258 (56%), Gaps = 22/258 (8%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRRQ 60
           MRRPSWNKSQAIQQVI LK LLET+ D+ A   RR L S P  ++ +V    EP+     
Sbjct: 41  MRRPSWNKSQAIQQVISLKALLETSEDSGAGALRRILVSKPPVTSNSVDSAKEPSDSNNN 100

Query: 61  D-----APMPDFSGDSSSRL------AADSESISPRTTVAAKEAVGQMTIFYSGKVNVYD 109
           +     AP         +         AD++ IS R+  A    VGQMTIFY GKVNVYD
Sbjct: 101 NLLDETAPHDSPKSPPPAPSLDCPLEEADNKVISSRSPGATDGLVGQMTIFYCGKVNVYD 160

Query: 110 DMPSEKAQAILQLAASPLPLSQKAPSDGTTG--LQSVPCHLQTAGIN--VGPSSPVIFPT 165
            +P +KAQAI+ LAA+P+     +P D      + + P HLQT        PS+  I PT
Sbjct: 161 GVPPDKAQAIMHLAATPI----HSPLDDPIRRPVFAFPYHLQTPSDKHVFVPSNAAISPT 216

Query: 166 LQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKD--RFKNKRKIAMPSSS 223
             T KV E  Q   E+ N++++   +G  +RK S+QRY EK+KD  RFK ++ +  P+SS
Sbjct: 217 TPTEKVTEYSQQCREKGNVTYDHDVEGQANRKMSLQRYLEKKKDRGRFKGRKNLG-PNSS 275

Query: 224 SLDVYLNRWVGDQFANEQ 241
           SLD YLN  +    +NEQ
Sbjct: 276 SLDAYLNHQMRTHISNEQ 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477363|ref|XP_002279320.2| PREDICTED: protein TIFY 4B-like [Vitis vinifera]

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 167/356 (46%), Gaps = 73/356 (20%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARR--------KLYSVPSHSAVTVKETC 52
           MRRPSWNKSQAIQQVI LK+LLET+  + A   R+         L  V S+SA + KE  
Sbjct: 41  MRRPSWNKSQAIQQVISLKSLLETSEGSGAGVLRKITDSPPAENLPPVTSNSADSGKELS 100

Query: 53  ----------EPAPCRRQDA-PMPDFSGDSSSRL-AADSESISPRTTVAAKEAVGQMTIF 100
                     E  P   +D  P    SG+ +SR   AD++   PR+  A    VGQMTIF
Sbjct: 101 ADIQISVSADELVPLPPKDHHPESTPSGELASRPPEADTKHTCPRSPGATNCLVGQMTIF 160

Query: 101 YSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVG--PS 158
           Y GKVNVYD +P +KAQAI+ LAASP  L    P  G   L S PCHL TA +  G  P 
Sbjct: 161 YCGKVNVYDGVPDDKAQAIMHLAASPFHLPSDDPFSGAAMLCSSPCHLHTANVKHGHIPP 220

Query: 159 SPVIFPTLQTVKVVENCQLPWEESNIS--------------------------------- 185
             ++  T+QT K  E  Q   EE N +                                 
Sbjct: 221 RAMVSQTMQTEKFTEYSQQYREEVNFTRGHGSEALSGLRTVGSPTARPTEDMEQTTCLTI 280

Query: 186 -------------HEDSFD--GPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLDVYLN 230
                        +E   D  G   RK S+QRY EKRKDRFK+++KI +P S SL++Y+N
Sbjct: 281 WGTFRYKVMPFEIYEGIMDVEGQVDRKLSLQRYFEKRKDRFKSRKKIGLP-SGSLEMYVN 339

Query: 231 RWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDVTEN 286
                Q +N Q + S   S  Q   S T   C   +N        VD N KD+ E+
Sbjct: 340 HQARTQPSNGQSSRSGTSSPPQHGLSHTL--CSSADNHTKNFTPFVDLNSKDIQES 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455306|ref|XP_004145394.1| PREDICTED: protein TIFY 4B-like [Cucumis sativus] gi|449494857|ref|XP_004159666.1| PREDICTED: protein TIFY 4B-like [Cucumis sativus]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 152/302 (50%), Gaps = 24/302 (7%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYS--VPSHSAVTVKETCEPAPCR 58
           MRRPSWNKSQAIQQVI LK LLE   D+ A   R+ + S  + S+   + KE  + A   
Sbjct: 41  MRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRINSNQGDSPKEPSDDA--- 97

Query: 59  RQDAPMPDFSGDSSSRLAA----------DSESISPRTTVAAKEAVGQMTIFYSGKVNVY 108
            Q     D S  S+   A           ++   SPR         GQMTIFY GKVNVY
Sbjct: 98  -QVTMSVDESAYSNVETAKSTPEDPPVEPENNVTSPRDQYDTNGVDGQMTIFYCGKVNVY 156

Query: 109 DDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAG--INVGPSSPVIFPTL 166
           D +P +KA AI+ LAASP+   Q  P  GT   QS PC LQT+    +  P S  I+  +
Sbjct: 157 DGVPPDKAWAIMHLAASPIHFPQNHPMSGTAACQSPPCLLQTSSDRDDFLPPSATIYRNV 216

Query: 167 QTVKVVENCQLPWEESNISHEDS-FDGPTSRKASVQRYREKRKD--RFKNKRKIAMPSSS 223
            T K+ E+ Q        S  DS  +G  SRK S+QRY EKRKD  R KNK+   + SS 
Sbjct: 217 HTEKLGEHPQQQQHAKGTSMRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGL-SSP 275

Query: 224 SLDVYLNRWVGDQFANEQLNPSDVCSTLQSRPSQTSPGCGVVENLANVSNLPVDPNDKDV 283
           SL+ Y+N  +    +N+ L    + ++  S         G  +N   ++   VD N KD+
Sbjct: 276 SLEGYMNHQMRTHISNKNL--GQIVTSSLSPTGVAKAFVGPADNQPKLACFSVDLNVKDI 333

Query: 284 TE 285
            E
Sbjct: 334 QE 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|389986115|gb|AFL46175.1| jasmonate ZIM domain protein k.1 [Nicotiana attenuata]

 Score =  150 bits (379), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 130/224 (58%), Gaps = 34/224 (15%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAV--------TVKETC 52
           MRRPSWNKSQAIQQVI LK LLETT D++A   R+KLY   S + +        T +E  
Sbjct: 41  MRRPSWNKSQAIQQVISLKALLETTPDSDAG-TRKKLYIPRSDTKLHHVQRGKNTDEEFI 99

Query: 53  EPA----PCRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKE-AVGQMTIFYSGKVNV 107
           E A    P  R      D SGD++  L A  +  +P  T+ + + + GQMTIFYSGKVNV
Sbjct: 100 ELAEETVPDGRTLQDKADLSGDATPNLVAAIDKSAPSRTIGSVDTSAGQMTIFYSGKVNV 159

Query: 108 YDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSP-VIFPTL 166
           YDD+P++KAQ I+++A+S L +  + P + T   Q   C LQ A   + P S  V+ PT+
Sbjct: 160 YDDVPADKAQTIMRVASSSLCVPSETPLNATVAAQHSTCCLQVANTKLRPDSDMVLLPTI 219

Query: 167 QTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR 210
           QT + VEN                  P+SRKASVQRY EKRKDR
Sbjct: 220 QT-EAVEN------------------PSSRKASVQRYLEKRKDR 244

Source: Nicotiana attenuata

Species: Nicotiana attenuata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682959|ref|NP_567442.2| protein TIFY 4A [Arabidopsis thaliana] gi|75140935|sp|Q7XA73.1|TIF4A_ARATH RecName: Full=Protein TIFY 4A; AltName: Full=Protein PEAPOD 1 gi|33589740|gb|AAQ22636.1| At4g14710/dl3395c [Arabidopsis thaliana] gi|332658084|gb|AEE83484.1| protein TIFY 4A [Arabidopsis thaliana]

 Score =  146 bits (369), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 131/251 (52%), Gaps = 42/251 (16%)

Query: 1   MRRPSWNKSQAIQQVICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEP------ 54
           MRRPSWNKSQAIQQV+ LK L E   D+ A   R+ L S P +         EP      
Sbjct: 41  MRRPSWNKSQAIQQVLSLKALYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEA 100

Query: 55  ----------APCRRQDAPM-PDFSGDSSSRLA---ADSESISPRTTVAAKEAVGQMTIF 100
                       C R D+P   +FSG S   ++       +ISPR+     E VGQMTIF
Sbjct: 101 CGRVSYPEDNGACHRMDSPRSAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIF 160

Query: 101 YSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSP 160
           YSGKVNVYD +P EKA++I+  AA+P+ L    P +G                 +  SS 
Sbjct: 161 YSGKVNVYDGIPPEKARSIMHFAANPIDL----PENG-----------------IFASSR 199

Query: 161 VIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAM 219
           +I   +   K++E  Q   E++N S +   +G  +RK S+QRYREKRKDR F   +K   
Sbjct: 200 MISKLISKEKMMELPQKGLEKANSSRDSGMEGQANRKVSLQRYREKRKDRKFSKAKKCPG 259

Query: 220 PSSSSLDVYLN 230
            +SSSL+++LN
Sbjct: 260 VASSSLEMFLN 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:505006464	313	PPD1 "PEAPOD 1" [Arabidopsis t	0.891	0.814	0.301	5.8e-16
TAIR|locus:2130155	315	PPD2 [Arabidopsis thaliana (ta	0.856	0.777	0.318	3.2e-15
TAIR|locus:2147142	187	JAZ12 "jasmonate-zim-domain pr	0.405	0.620	0.323	1.5e-08
TAIR|locus:2027267	249	TIFY10B [Arabidopsis thaliana	0.506	0.582	0.303	5.8e-06
TAIR|locus:2088530	352	JAZ3 "jasmonate-zim-domain pro	0.237	0.193	0.394	6.1e-06
TAIR|locus:2202180	253	JAZ1 "jasmonate-zim-domain pro	0.209	0.237	0.360	2.3e-05
TAIR|locus:2198018	310	JAZ4 "jasmonate-zim-domain pro	0.531	0.490	0.339	6.8e-05
TAIR|locus:2033607	267	TIFY7 [Arabidopsis thaliana (t	0.486	0.520	0.288	8.3e-05
TAIR|locus:2018804	274	JAZ5 "jasmonate-zim-domain pro	0.353	0.368	0.286	0.00057

TAIR|locus:505006464 PPD1 "PEAPOD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 5.8e-16, P = 5.8e-16
 Identities = 83/275 (30%), Positives = 121/275 (44%)

Query:     1 MRRPSWNKSQAIQQVICLKXXXXXXXXXXXXXXRRKLYSVPSHSAVTVKETCEPAPCRRQ 60
             MRRPSWNKSQAIQQV+ LK              R+ L S P +         EP+    +
Sbjct:    41 MRRPSWNKSQAIQQVLSLKALYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSN-ELE 99

Query:    61 DAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSG-KVNVYDDMPSEKAQAI 119
                   +  D+ +    DS    PR+   +  + G       G K  +    P+E ++ +
Sbjct:   100 ACGRVSYPEDNGACHRMDS----PRSAEFSGGS-GHFVSEKDGHKTTISPRSPAETSELV 154

Query:   120 LQLA---ASPLPLSQKAPSDGTTGLQSV---PCHLQTAGINVGPSSPVIFPTLQTVKVVE 173
              Q+    +  + +    P +    +      P  L   GI    SS +I   +   K++E
Sbjct:   155 GQMTIFYSGKVNVYDGIPPEKARSIMHFAANPIDLPENGIFA--SSRMISKLISKEKMME 212

Query:   174 NCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAMPSSSSLDVYLNRW 232
               Q   E++N S +   +G  +RK S+QRYREKRKDR F   +K    +SSSL+++LN  
Sbjct:   213 LPQKGLEKANSSRDSGMEGQANRKVSLQRYREKRKDRKFSKAKKCPGVASSSLEMFLNCQ 272

Query:   233 VGDQFANEQLNPSDVCSTL--QSRPSQT-SPGCGV 264
                + A  Q N     S L  QS  SQT SP   V
Sbjct:   273 PRMKAAYSQ-NLGCTGSPLHSQSPESQTKSPNLSV 306

GO:0005634 "nucleus" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2130155 PPD2 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 90/283 (31%), Positives = 123/283 (43%)

Query:     1 MRRPSWNKSQAIQQVICLKXXXXXXXXXXXXXXRRKLYSVPSHSA-VTVK--------ET 51
             MRRPSWNKSQAIQQV+ LK              R+ L S P +   VT          E 
Sbjct:    41 MRRPSWNKSQAIQQVLSLKALYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEA 100

Query:    52 CEPAP-------CRRQDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMTIFYSGK 104
             C   P       C R+D+P       SS +  AD +S     TV+        T    G+
Sbjct:   101 CGRIPLQEDDGACHRRDSPRSAEFSGSSGQFVADKDS---HKTVSVSPRSPAETNAVVGQ 157

Query:   105 VNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFP 164
             + ++    S K           +P  +KA S       + P  L   GI    SS +I  
Sbjct:   158 MTIFY---SGKVNVY-----DGVP-PEKARS--IMHFAANPIDLPENGIFA--SSRMISK 204

Query:   165 TLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR-FKNKRKIAMPSSS 223
              +   K+VE  Q   E++  S +   +G  +RK S+QRY EKRKDR F   +K    +SS
Sbjct:   205 PMSKEKMVELPQYGLEKAPASRDSDVEGQANRKVSLQRYLEKRKDRRFSKTKKAPGVASS 264

Query:   224 SLDVYLNRWVGDQFANEQ-LNPSDVCSTLQSRPSQT-SPGCGV 264
             SL+++LNR      A  Q L+ +  C   +S  +QT SP   V
Sbjct:   265 SLEMFLNRQPRMNAAYSQNLSGTGHC---ESPENQTKSPNISV 304

GO:0005634 "nucleus" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147142 JAZ12 "jasmonate-zim-domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 43/133 (32%), Positives = 63/133 (47%)

Query:    96 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 155
             Q+TIF+ G V V+D +PSEK Q IL++AA  +       +  +T +  V     +  +N 
Sbjct:    57 QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAME------TKNSTSISPV----SSPALNR 106

Query:   156 GPSSPVIFPTLQTVKVVENCQLPWEESNISH-EDSFDGPTSRKASVQRYREKRKDRFKNK 214
              PS    F +  T  V      P+    IS    + D P +R+ S+QR+ EKR+DR  NK
Sbjct:   107 APS----FSS--TSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNK 160

Query:   215 RKIAMPSSSSLDV 227
                        DV
Sbjct:   161 NPYPTSDFKKTDV 173

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2027267 TIFY10B [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 48/158 (30%), Positives = 75/158 (47%)

Query:    67 FSGDSSSRLAADSESISPRT-TVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 125
             FS  SSS    D + I   T +V  +     +TIFY G+V V+DD  +EKA+ ++ LA  
Sbjct:    89 FSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANK 148

Query:   126 PLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEESNIS 185
                 S K+ +  T  + +         I   P+ PV  P  +T       Q P + +  S
Sbjct:   149 G---SAKSFTCFTAEVNNNHSAYSQKEIASSPN-PVCSPA-KTA-----AQEPIQPNPAS 198

Query:   186 HEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSS 223
                + + P +R+AS+ R+ EKRKDR  +K    +  S+
Sbjct:   199 L--ACELPIARRASLHRFLEKRKDRITSKAPYQIDGSA 234

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2088530 JAZ3 "jasmonate-zim-domain protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
 Identities = 28/71 (39%), Positives = 38/71 (53%)

Query:    96 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 155
             Q+TIFY+G V VYDD+  EKA+AI+ LA +   + Q   S   T  Q V  H   A ++ 
Sbjct:   178 QLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQVF-SPPQTHQQVV--HHTRASVDS 234

Query:   156 GPSSPVIFPTL 166
                 P   PT+
Sbjct:   235 SAMPPSFMPTI 245

GO:0005634 "nucleus" evidence=ISM

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2202180 JAZ1 "jasmonate-zim-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 22/61 (36%), Positives = 36/61 (59%)

Query:    65 PDFSGDSSSRLAADSESISPRT-TVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLA 123
             P FS  SSS    D   ++  T +V  +     +TIFY+G+V V++D  +EKA+ ++ LA
Sbjct:    94 PSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLA 153

Query:   124 A 124
             +
Sbjct:   154 S 154

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009555 "pollen development" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009908 "flower development" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198018 JAZ4 "jasmonate-zim-domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 59/174 (33%), Positives = 82/174 (47%)

Query:    73 SRLAADSESISPR-TTV--AAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS-P-- 126
             S + A   S+ P  TT+  ++K    Q+TIFY+G V VY D+  EKAQAI+ LA + P  
Sbjct:   121 SPIMAPPVSVFPAPTTIRSSSKPLPPQLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHA 180

Query:   127 LPLSQKAP------SDGTTGLQSVP-CHLQTAGINVGP--SSPVIFPT-LQTVKVVENCQ 176
              P+SQ  P      S  TT   ++P   L +    V    SS     T L   K      
Sbjct:   181 KPVSQPKPQKLVHHSLPTTDPPTMPPSFLPSISYIVSETRSSGSNGVTGLGPTKT--KAS 238

Query:   177 LPWEESN----ISHEDSFDGPTSRKASVQRYREKRKDRFKNKRKIAMPSSSSLD 226
             L    +N     S   +   P +RKAS+ R+ EKRK+R  N     + + SS+D
Sbjct:   239 LASTRNNQTAAFSMAPTVGLPQTRKASLARFLEKRKERVINVSPYYVDNKSSID 292

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0009611 "response to wounding" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2033607 TIFY7 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 43/149 (28%), Positives = 67/149 (44%)

Query:    81 SISPRTTVAAKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAASPLP--LSQKAPSDGT 138
             S+ PR  VA+  +  Q+TIFY G ++V++D+  +KAQAI+  A + L        P    
Sbjct:   106 SLVPR--VASSGSSPQLTIFYGGTISVFNDISPDKAQAIMLCAGNGLKGETGDSKPVREA 163

Query:   139 TGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENCQLPWEES-NISHEDSFDG-PTSR 196
               +     H   A  +   +    F   +   V     +   ES N +  +     P +R
Sbjct:   164 ERMYGKQIHNTAATSSSSATHTDNFSRCRDTPVAATNAMSMIESFNAAPRNMIPSVPQAR 223

Query:   197 KASVQRYREKRKDRFKNKRKIAMPSSSSL 225
             KAS+ R+ EKRK+R  +    AMP    L
Sbjct:   224 KASLARFLEKRKERLMS----AMPYKKML 248

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2018804 JAZ5 "jasmonate-zim-domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00057, P = 0.00057
 Identities = 33/115 (28%), Positives = 60/115 (52%)

Query:    96 QMTIFYSGKVNVYDDMPSEKAQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINV 155
             Q+TIF+ GKV VY++ P +KA+ I+++A    P+++         +Q+ P + +    N 
Sbjct:    98 QLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTE-------INIQT-PINDE----NN 145

Query:   156 GPSSPVIFPTLQTVKVVENCQLPWEESNISHEDSFDGPTSRKASVQRYREKRKDR 210
                S ++ P L   +  +N  L  E+     ++      +R+AS+ R+  KRKDR
Sbjct:   146 NNKSSMVLPDLN--EPTDNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDR 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.126   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       272   0.00099  114 3  11 23  0.42    34
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  201 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.04u 0.15s 26.19t   Elapsed:  00:00:01
  Total cpu time:  26.04u 0.15s 26.19t   Elapsed:  00:00:01
  Start:  Mon May 20 18:44:51 2013   End:  Mon May 20 18:44:52 2013

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
pfam06200	36	pfam06200, tify, tify domain	2e-11
smart00979	36	smart00979, TIFY, This short possible domain is fo	5e-11
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	2e-04

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 90  AKEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS 125
                 Q+TIFY G+V V+DD+P EKAQ I++LA+ 
Sbjct: 1   PSAESAQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 56.1 bits (136), Expect = 5e-11
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 91  KEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAA 124
            E   Q+TIFY G V V+DD+P EKAQ I+ LA 
Sbjct: 2   PEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAG 35

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 193 PTSRKASVQRYREKRKDRFKNKR 215
           P +RKAS+QR+ EKRKDR  +  
Sbjct: 1   PIARKASLQRFLEKRKDRLVSAA 23

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.74
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	99.54
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	92.63

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.74  E-value=2e-18  Score=117.68  Aligned_cols=35  Identities=49%  Similarity=0.838  Sum_probs=32.7

Q ss_pred             cccCcceeEEeCcEEEEeCCCCHHHHHHHHHHhcC
Q 023206           91 KEAVGQMTIFYSGKVNVYDDMPSEKAQAILQLAAS  125 (286)
Q Consensus        91 ~~~~~QLTIFY~G~V~VfDdvp~eKA~~Im~lA~~  125 (286)
                      .+.++||||||+|+|+||||||+|||++||.||++
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999974

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=99.54  E-value=1.5e-15  Score=97.90  Aligned_cols=26  Identities=54%  Similarity=0.764  Sum_probs=10.0

Q ss_pred             hhhHHHHhHHHHHhhhhhhhccCCCC
Q 023206          193 PTSRKASVQRYREKRKDRFKNKRKIA  218 (286)
Q Consensus       193 PIARKaSLqRFLEKRKDRl~AKaPY~  218 (286)
                      |||||+||||||||||||+.+++||.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAAKSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH-----------
T ss_pred             CchHHHHHHHHHHHHHHhhccCCCCC
Confidence            79999999999999999999999996

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=92.63  E-value=0.078  Score=38.20  Aligned_cols=25  Identities=44%  Similarity=0.558  Sum_probs=21.3

Q ss_pred             HHHHhHHHHHhhhhhhhc-cCCCCCC
Q 023206          196 RKASVQRYREKRKDRFKN-KRKIAMP  220 (286)
Q Consensus       196 RKaSLqRFLEKRKDRl~A-KaPY~~~  220 (286)
                      |+++|+||+|||+.|... +..|...
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~R   26 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESR   26 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchH
Confidence            688999999999999875 5788765

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 37/266 (13%), Positives = 75/266 (28%), Gaps = 73/266 (27%)

Query: 2   RRPSWNKSQAIQQ--VICLKTLLETTTDTEATEARRKLYSVPSHSAVTVKETCEPAPCRR 59
           R   +N +Q   +  V  L+  L+          R+ L  +     V +           
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLK---------LRQALLELRPAKNVLIDG--------- 157

Query: 60  QDAPMPDFSGDSSSRLAADSESISPRTTVAAKEAVGQMT--IFY--SGKVNVYDDMPSEK 115
               +    G +   +A D           + +   +M   IF+      N  + +  E 
Sbjct: 158 ----VLGS-GKTW--VALD--------VCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EM 201

Query: 116 AQAILQLAASPLPLSQKAPSDGTTGLQSVPCHLQTAGINVGPSSPVIFPTLQTVKVVENC 175
            Q +L              S+    + S+   L+                L   K  ENC
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---------------RLLKSKPYENC 246

Query: 176 QLP----WEESNISHEDSFDGP-----TSRKASVQRYR--EKRKDRFKNKRKIAMPSSSS 224
            L              ++F+       T+R   V  +           +   + +     
Sbjct: 247 LLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 225 LDVYLNRWVGDQFANEQLNPSDVCST 250
             + L +++  +   + L P +V +T
Sbjct: 304 KSL-LLKYLDCRP--QDL-PREVLTT 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	99.46
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	99.38

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00