Citrus Sinensis ID: 023215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQSIRGDANARQKINLRSYQICNYIYKVKVHHGLFGDNIL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHccccccHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mqptaggsssssggggggvggrgelsrgglarlrsapaSWIDALLEEeledplkpnqcltqllssgdpvsvtaGLSLSQSQLDqvgfqrqnsspadlfdgyfsnyatpssydyvdvspnsnkrarednntqfpsptaklnfhshlkveqsgqvpggvsnlvDMDMEKLLEDsvpcrvrakrgcathprsIAERVRRTRISDRIRKLQDlvpnmdkqtNTADMLEEAVEYVKFLQKQIEILSygrnsqsirgdanaRQKINLRSYQICNYIYKVKVhhglfgdnil
Flexible Loop (DISEMBL)
mqptaggsssssggggggvGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDsvpcrvrakrgcathprsiaervrrtrisdrirklqdlvpnmdkqTNTADMLEEAVEYVKFLQKQIEILsygrnsqsirgdANARQKINLRSYQICNYIYKVKVHHGLFGDNIL
Low Complexity Region (SEG)
MQPTaggsssssggggggvggrgelsrgglarlrsaPASWIDAlleeeleDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAErvrrtrisdrirKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQSIRGDANARQKINLRSYQICNYIYKVKVHHGLFGDNIL
Disordered region (IsUnstruct)
***************************************WIDALL***************************************************LFDGYFSNYATPSSYDY*******************************************************L**SVPCRVRAKRGCA************************************DMLEEAVEYVKFLQKQIEILSYGRNSQSIRGDANARQKINLRSYQICNYIYKVKVHHGLFGD***
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************ISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS************************ICNYIYKVKVHHG*******
Disordered Region (DISEMBL)
***********************ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQSIRGDANARQKINLRSYQICNYIYKVKVHHGLFGDNIL
Disordered Region (DISPRO)
**********************************SAPASWIDALLEEELEDPLKPNQCLTQLLSSG************************************SNYATPSSY********************************************************LLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQSIRGDANARQKINLRSYQICNYIYKVKVHHGLFGDN*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGDPVSVTAGLSLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQSIRGDANARQKINLRSYQICNYIYKVKVHHGLFGDNIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9C8P8	259	Transcription factor bHLH	yes	no	0.712	0.783	0.576	3e-60
Q9M0R0	262	Transcription factor bHLH	no	no	0.694	0.755	0.591	4e-55
Q9C690	379	Transcription factor bHLH	no	no	0.284	0.213	0.728	8e-31
Q66GR3	359	Transcription factor bHLH	no	no	0.343	0.272	0.633	1e-30
Q8H102	362	Transcription factor bHLH	no	no	0.284	0.223	0.670	7e-26
Q9ZW81	297	Transcription factor bHLH	no	no	0.263	0.252	0.705	2e-25
Q9LSQ3	297	Transcription factor bHLH	no	no	0.238	0.228	0.594	4e-17
Q8S3D5	310	Transcription factor bHLH	no	no	0.280	0.258	0.517	1e-16
Q9ZUG9	350	Transcription factor bHLH	no	no	0.242	0.197	0.557	2e-16
Q8GY61	335	Transcription factor bHLH	no	no	0.263	0.223	0.573	4e-15

>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/241 (57%), Positives = 168/241 (69%), Gaps = 38/241 (15%)

Query: 24  ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLS----SGDPVSVTAGLSLSQ 79
           E+SR GL+R+RSAPA+WI+ LLEE+ E+ LKPN CLT+LL+    SG  ++         
Sbjct: 20  EVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFL 79

Query: 80  SQLDQV--------GFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVSPNS 120
           S ++Q         GF RQNSSPAD         DGYFSN+  P++YDY    VD+SP  
Sbjct: 80  SSVEQGLYNHHQGGGFHRQNSSPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDISPT- 138

Query: 121 NKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAK 180
            KR+R D  TQF S          LK EQ   + GG+S ++DM+M+K+ EDSVPCRVRAK
Sbjct: 139 -KRSR-DMETQFSS---------QLKEEQ---MSGGISGMMDMNMDKIFEDSVPCRVRAK 184

Query: 181 RGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEIL 240
           RGCATHPRSIAERVRRTRISDRIR+LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI+ L
Sbjct: 185 RGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQEL 244

Query: 241 S 241
           +
Sbjct: 245 T 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1

 Score =  215 bits (547), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 161/230 (70%), Gaps = 32/230 (13%)

Query: 32  RLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGD----------PVSVTAGLSLSQ 79
           R+RSAPA+W++ALLEE+ E+ LKPN  LT LL+  S D          P+ V  GL    
Sbjct: 31  RIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGL---- 86

Query: 80  SQLDQVGFQRQNSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQF 132
               Q GF RQNS+PAD     DG+  ++   ++YDY    +DVSP S KR+RE     F
Sbjct: 87  --YQQGGFHRQNSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGS-KRSRE-MEALF 142

Query: 133 PSPTAKLNFHSHLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIA 191
            SP     F S +K EQS GQVP GVS++ DM+ME L+EDSV  RVRAKRGCATHPRSIA
Sbjct: 143 SSP----EFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIA 198

Query: 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
           ERVRRTRISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L+
Sbjct: 199 ERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELT 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 73/81 (90%)

Query: 164 DMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADML 223
           D+E+LL DS+PC++RAKRGCATHPRSIAERVRRT+IS+R+RKLQDLVPNMD QTNTADML
Sbjct: 291 DIEQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADML 350

Query: 224 EEAVEYVKFLQKQIEILSYGR 244
           + AV+Y+K LQ+Q++ L   R
Sbjct: 351 DLAVQYIKDLQEQVKALEESR 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 82/101 (81%), Gaps = 3/101 (2%)

Query: 144 HLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRI 203
           HL + +S       S++V +D    L+DSVPC++RAKRGCATHPRSIAERVRRTRIS+R+
Sbjct: 249 HLSLPKSSST---ASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERM 305

Query: 204 RKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGR 244
           RKLQ+LVPNMDKQTNT+DML+ AV+Y+K LQ+Q +IL+  R
Sbjct: 306 RKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNR 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 159 NLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTN 218
           N +D  M+ L EDSVPC++RAKRGCATHPRSIAER RRTRIS +++KLQDLVPNMDKQT+
Sbjct: 266 NYMDNFMQ-LPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTS 324

Query: 219 TADMLEEAVEYVKFLQKQIEIL 240
            +DML+ AV+++K LQ Q++ L
Sbjct: 325 YSDMLDLAVQHIKGLQHQLQNL 346

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW81|BH129_ARATH Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 66/78 (84%), Gaps = 3/78 (3%)

Query: 165 MEKLL---EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTAD 221
           ME L+   EDSVPCR RAKRG ATHPRSIAER RRTRIS +++KLQ+LVPNMDKQT+ AD
Sbjct: 218 MENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYAD 277

Query: 222 MLEEAVEYVKFLQKQIEI 239
           ML+ AVE++K LQ Q+E+
Sbjct: 278 MLDLAVEHIKGLQHQVEV 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
           RVRA+RG AT P SIAER+RR RI++R++ LQ+LVPN +K T+ A ML+E +EYV+FLQ 
Sbjct: 98  RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query: 236 QIEILSYGR 244
           Q+++LS  R
Sbjct: 157 QVKVLSMSR 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 5/85 (5%)

Query: 176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
           +VRA+RG AT P SIAER+RR RI++R++ LQ+LVPN +K T+ A ML+E ++YVKFLQ 
Sbjct: 129 KVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEIIDYVKFLQL 187

Query: 236 QIEILSYGRNSQSIRGDANARQKIN 260
           Q+++LS  R    + G A+A  +I+
Sbjct: 188 QVKVLSMSR----LGGAASASSQIS 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 175 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQ 234
            ++RA+RG AT P SIAER+RR RI++R++ LQ+LVPN +K T+ A ML+E ++YVKFLQ
Sbjct: 136 TKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQ 194

Query: 235 KQIEILSYGR 244
            Q+++LS  R
Sbjct: 195 LQVKVLSMSR 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 167 KLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEA 226
           K LE +    VRA+RG AT   SIAERVRR +IS+R++ LQDLVP  DK T  A ML+E 
Sbjct: 162 KELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEI 221

Query: 227 VEYVKFLQKQIEILS 241
           + YV+ LQ+QIE LS
Sbjct: 222 INYVQSLQRQIEFLS 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
449447621	244	PREDICTED: transcription factor bHLH80-l	0.705	0.823	0.599	3e-60
224145129	246	predicted protein [Populus trichocarpa]	0.754	0.873	0.565	4e-59
297846606	256	basic helix-loop-helix family protein [A	0.705	0.785	0.589	6e-59
15219606	259	transcription factor bHLH80 [Arabidopsis	0.712	0.783	0.576	2e-58
224136007	264	predicted protein [Populus trichocarpa]	0.817	0.882	0.588	1e-55
297809111	263	basic helix-loop-helix family protein [A	0.715	0.775	0.607	6e-55
15233768	262	transcription factor bHLH81 [Arabidopsis	0.694	0.755	0.591	2e-53
255561634	284	DNA binding protein, putative [Ricinus c	0.778	0.781	0.533	2e-53
222080621	259	bHLH transcription factor MYC4 [Catharan	0.708	0.779	0.518	4e-51
225460440	251	PREDICTED: transcription factor bHLH80-l	0.761	0.864	0.528	6e-50

>gi|449447621|ref|XP_004141566.1| PREDICTED: transcription factor bHLH80-like [Cucumis sativus] gi|449522500|ref|XP_004168264.1| PREDICTED: transcription factor bHLH80-like [Cucumis sativus]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/222 (59%), Positives = 154/222 (69%), Gaps = 21/222 (9%)

Query: 28  GGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGDPVSVTAGLSLSQSQLDQV 85
            GLAR RSAPA+W++ALLE++ EDPLKPN CLTQLL+  S D  S  A   L        
Sbjct: 24  AGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLAANSSDLDSAPADHPLFDPN-PSP 82

Query: 86  GFQRQNSSPADLF------DGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQFPSPTAKL 139
            F RQNSSP +        +G++++Y   SS   +D+SP S      D    FP      
Sbjct: 83  AFHRQNSSPPEFLAPSGIAEGFYTSYPLNSS-PTLDISPTSKPSTDVDAQNFFP------ 135

Query: 140 NFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRI 199
            F   LK E SG     VS+L+DM+MEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRI
Sbjct: 136 KFSPQLKREGSG-----VSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRI 190

Query: 200 SDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
           SDRIRKLQ++VPNMDKQTNTADMLEEAVEYVKFLQKQI+ L+
Sbjct: 191 SDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELT 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145129|ref|XP_002325537.1| predicted protein [Populus trichocarpa] gi|222862412|gb|EEE99918.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/260 (56%), Positives = 176/260 (67%), Gaps = 45/260 (17%)

Query: 1   MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLT 60
           MQPT  GSS++S GGG   GG      GG+AR RSAPA+WI+ALL EE EDPLK +Q LT
Sbjct: 1   MQPTPAGSSNTSAGGGSAGGG----GGGGIARFRSAPATWIEALLGEEEEDPLKQSQNLT 56

Query: 61  QLLSSGDPVSV------TAGLSLSQSQLDQVG-FQRQNSSPADLF--------DGYFSNY 105
           +LL+S  P S        +  ++     + VG FQRQNSSP D           GYFS+Y
Sbjct: 57  ELLTSNTPSSRDSVPFNASSAAVEPGLFEPVGGFQRQNSSPTDFLRSSGIGSDQGYFSSY 116

Query: 106 ATPSSYDYV----DVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLV 161
              S+Y+Y+    DVSP S+KRARE                   K EQ+G  P   S+L+
Sbjct: 117 GNASNYEYMTPNMDVSP-SDKRARE-------------------KGEQTG--PLRASSLI 154

Query: 162 DMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTAD 221
           +M+M+KLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTAD
Sbjct: 155 EMEMDKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAD 214

Query: 222 MLEEAVEYVKFLQKQIEILS 241
           ML+EA+ YVKFLQ+QI+ L+
Sbjct: 215 MLDEALAYVKFLQRQIQELT 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846606|ref|XP_002891184.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297337026|gb|EFH67443.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 141/239 (58%), Positives = 167/239 (69%), Gaps = 38/239 (15%)

Query: 24  ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLSSGD----------PVSVTA 73
           E+SR GL+R+RSAPA+WI+ LLEE+ E+ LKPN CLT+LL+  +          P SV  
Sbjct: 21  EVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNSGGVITSHEFPSSVEQ 80

Query: 74  GLSLSQSQLDQVGFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVSPNSNK 122
           GL     Q    GF RQNSSPAD         DGYFS++  P++YDY    VD+SP   K
Sbjct: 81  GLYNYNHQGG--GFHRQNSSPADFLSGSGVGTDGYFSSFGIPANYDYLSTNVDISPT--K 136

Query: 123 RAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRG 182
           R+R D  TQF S          LK EQ   + GGVS ++DM+M+KL+E SVPCRVRAKRG
Sbjct: 137 RSR-DMETQFSS---------QLKEEQ---MSGGVSGMMDMNMDKLIEGSVPCRVRAKRG 183

Query: 183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
           CATHPRSIAERVRRTRISDRIR+LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI+ L+
Sbjct: 184 CATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQGQIQELT 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219606|ref|NP_174776.1| transcription factor bHLH80 [Arabidopsis thaliana] gi|75308885|sp|Q9C8P8.1|BH080_ARATH RecName: Full=Transcription factor bHLH80; AltName: Full=Basic helix-loop-helix protein 80; Short=AtbHLH80; Short=bHLH 80; AltName: Full=Transcription factor EN 71; AltName: Full=bHLH transcription factor bHLH080 gi|12324283|gb|AAG52112.1|AC023064_5 helix-loop-helix protein 1A, putative; 28707-26892 [Arabidopsis thaliana] gi|15724178|gb|AAL06481.1|AF411791_1 At1g35460/F12A4_2 [Arabidopsis thaliana] gi|20127088|gb|AAM10958.1|AF488612_1 putative bHLH transcription factor [Arabidopsis thaliana] gi|20147401|gb|AAM10410.1| At1g35460/F12A4_2 [Arabidopsis thaliana] gi|332193674|gb|AEE31795.1| transcription factor bHLH80 [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/241 (57%), Positives = 168/241 (69%), Gaps = 38/241 (15%)

Query: 24  ELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLTQLLS----SGDPVSVTAGLSLSQ 79
           E+SR GL+R+RSAPA+WI+ LLEE+ E+ LKPN CLT+LL+    SG  ++         
Sbjct: 20  EVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFL 79

Query: 80  SQLDQV--------GFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVSPNS 120
           S ++Q         GF RQNSSPAD         DGYFSN+  P++YDY    VD+SP  
Sbjct: 80  SSVEQGLYNHHQGGGFHRQNSSPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDISPT- 138

Query: 121 NKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAK 180
            KR+R D  TQF S          LK EQ   + GG+S ++DM+M+K+ EDSVPCRVRAK
Sbjct: 139 -KRSR-DMETQFSS---------QLKEEQ---MSGGISGMMDMNMDKIFEDSVPCRVRAK 184

Query: 181 RGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEIL 240
           RGCATHPRSIAERVRRTRISDRIR+LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI+ L
Sbjct: 185 RGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQEL 244

Query: 241 S 241
           +
Sbjct: 245 T 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136007|ref|XP_002327358.1| predicted protein [Populus trichocarpa] gi|222835728|gb|EEE74163.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/260 (58%), Positives = 186/260 (71%), Gaps = 27/260 (10%)

Query: 1   MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPLKPNQCLT 60
           M P   GSS++SGGG GG GG G    GGL RLRSAPA+W+ ALLEEE EDPLK NQ LT
Sbjct: 1   MHPAPAGSSNTSGGGCGGGGGGGGGGGGGLPRLRSAPATWLLALLEEEEEDPLKQNQNLT 60

Query: 61  QLLSSGDPVSV-TAGLSLSQSQLDQ------VGFQRQNSSPADLF--------DGYFSNY 105
           QLL+S  P S  +A  + S + ++        GFQRQNSSPAD           GYFSNY
Sbjct: 61  QLLTSNAPSSRNSAPFNASSAAVEPGLYETGSGFQRQNSSPADFLGNSGIGSDQGYFSNY 120

Query: 106 ATPSSYDYV----DVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLV 161
              S+Y+Y+    +VSP S KRARE    +  +P A+  +   LK  Q+G +    S+L+
Sbjct: 121 GIASNYEYMPPNMEVSP-SAKRARE---LELQNPPAR--YPPPLKGAQTGSL--RASSLI 172

Query: 162 DMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTAD 221
           +M+M+KLLE+SVPC++RAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTAD
Sbjct: 173 EMEMDKLLEESVPCKIRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAD 232

Query: 222 MLEEAVEYVKFLQKQIEILS 241
           MLEEAV+YVKFLQ+QI+ L+
Sbjct: 233 MLEEAVDYVKFLQRQIQELT 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809111|ref|XP_002872439.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata] gi|297318276|gb|EFH48698.1| basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 136/224 (60%), Positives = 163/224 (72%), Gaps = 20/224 (8%)

Query: 32  RLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGD-PVSVTA---GLSLSQSQLDQV 85
           R+RSAPA+W++ALLEE+ E+ LKPN  LT LL+  S D P S ++    + + Q    Q 
Sbjct: 33  RIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRSSFEFPIPVEQGLYQQG 92

Query: 86  GFQRQNSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQFPSPTAK 138
           GF RQNS+PAD     DG+  ++  P++YDY    +DVSP S KR+RE     F SP   
Sbjct: 93  GFHRQNSTPADFLSGSDGFIQSFGIPANYDYLSGNIDVSPGS-KRSRE-MEALFSSP--- 147

Query: 139 LNFHSHLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRT 197
             F S +K EQS GQVP GVS + DM+ME L+EDSV  RVRAKRGCATHPRSIAERVRRT
Sbjct: 148 -EFTSQMKGEQSSGQVPAGVSGMTDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRT 206

Query: 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
           RISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L+
Sbjct: 207 RISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELT 250

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233768|ref|NP_192657.1| transcription factor bHLH81 [Arabidopsis thaliana] gi|75311758|sp|Q9M0R0.1|BH081_ARATH RecName: Full=Transcription factor bHLH81; AltName: Full=Basic helix-loop-helix protein 81; Short=AtbHLH81; Short=bHLH 81; AltName: Full=Transcription factor EN 72; AltName: Full=bHLH transcription factor bHLH081 gi|7267561|emb|CAB78042.1| putative protein [Arabidopsis thaliana] gi|34146832|gb|AAQ62424.1| At4g09180 [Arabidopsis thaliana] gi|110741264|dbj|BAF02182.1| putative bHLH transcription factor [Arabidopsis thaliana] gi|332657332|gb|AEE82732.1| transcription factor bHLH81 [Arabidopsis thaliana]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 161/230 (70%), Gaps = 32/230 (13%)

Query: 32  RLRSAPASWIDALLEEELEDPLKPNQCLTQLLS--SGD----------PVSVTAGLSLSQ 79
           R+RSAPA+W++ALLEE+ E+ LKPN  LT LL+  S D          P+ V  GL    
Sbjct: 31  RIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGL---- 86

Query: 80  SQLDQVGFQRQNSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQF 132
               Q GF RQNS+PAD     DG+  ++   ++YDY    +DVSP S KR+RE     F
Sbjct: 87  --YQQGGFHRQNSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGS-KRSRE-MEALF 142

Query: 133 PSPTAKLNFHSHLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIA 191
            SP     F S +K EQS GQVP GVS++ DM+ME L+EDSV  RVRAKRGCATHPRSIA
Sbjct: 143 SSP----EFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIA 198

Query: 192 ERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
           ERVRRTRISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L+
Sbjct: 199 ERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELT 248

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561634|ref|XP_002521827.1| DNA binding protein, putative [Ricinus communis] gi|223539040|gb|EEF40637.1| DNA binding protein, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/272 (53%), Positives = 175/272 (64%), Gaps = 50/272 (18%)

Query: 26  SRGGLARLRSAPASWIDALLEEELE--DPLKPNQCLTQLLSSGD--------PVSVTAGL 75
           +R GLAR RSAP +W++ALLEEE E  DPLKP Q LTQLL+S          P S +   
Sbjct: 18  NRVGLARFRSAPPTWLEALLEEEEEEEDPLKPTQTLTQLLASNTTRNSLPFGPSSSSVVE 77

Query: 76  SLSQSQLDQVG----FQRQNSSPADLF-------DGYFSNYATPSSYDYV----DVSPNS 120
               S L + G    FQRQ+SSPAD         DGYF+N+  P +Y+Y+    DVSP S
Sbjct: 78  PGGGSNLFEPGGGGGFQRQHSSPADFLVNSGIGNDGYFANFGIPPNYEYISPNMDVSP-S 136

Query: 121 NKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGG---VSNLVDMDMEKLLEDSVPCRV 177
            KR R+    Q    +A   +   LK EQS QVPGG   +S+L++M+MEKLLEDSVPCRV
Sbjct: 137 GKRTRD---VQLQHSSAN-KYPPLLKGEQSSQVPGGGDGMSSLIEMEMEKLLEDSVPCRV 192

Query: 178 RAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237
           RAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTADML+EAV          
Sbjct: 193 RAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVG--------- 243

Query: 238 EILSYGRNSQSIRGDANARQKINLRSYQICNY 269
                  NS++I+G+A+A  K N R   +C +
Sbjct: 244 -------NSRNIKGNAHAWPKNN-RKEHLCYF 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222080621|gb|ACM41587.1| bHLH transcription factor MYC4 [Catharanthus roseus]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 154/241 (63%), Gaps = 39/241 (16%)

Query: 30  LARLRSAPASWIDALLEEELED--------------PLKP------NQCLTQLLSSGDPV 69
           LAR RSAPA+W++ALLE+E  D              PL P          T++ S+G   
Sbjct: 17  LARFRSAPATWLEALLEDEETDVVLDPPVLATSNKPPLHPPVGASSQPQSTEVSSAGGRY 76

Query: 70  SVTAGL--SLSQSQLDQVGFQRQNSSPADLF-DGYFSNYATPSSYDYV------DVSPNS 120
           +   GL  S+        G  RQNSSPA+   DGYFS++  P++YDY+      DVS + 
Sbjct: 77  AADLGLLDSVGSGAGGLSGLLRQNSSPAEFLSDGYFSSFGIPTNYDYLMSSSPLDVSESP 136

Query: 121 NKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAK 180
           +KR RE ++    +  A +           G+  GG+S L+D +M+KL EDSV CRVRAK
Sbjct: 137 SKRPREADSNAAKASLAVVK----------GEQGGGISGLLDAEMDKLAEDSVLCRVRAK 186

Query: 181 RGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEIL 240
           RGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTNTADMLEEAVEYVKFLQKQI+ L
Sbjct: 187 RGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQKQIQEL 246

Query: 241 S 241
           +
Sbjct: 247 T 247

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460440|ref|XP_002271390.1| PREDICTED: transcription factor bHLH80-like [Vitis vinifera]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 139/263 (52%), Positives = 168/263 (63%), Gaps = 46/263 (17%)

Query: 1   MQPTAGGSSSSSGGGGGGVGGRGELSRGGLARLRSAPASWIDALLEEELEDPL-----KP 55
           MQPT GG                E++R  LAR RSAPA+W+D LLEEE  +       KP
Sbjct: 1   MQPTRGG----------------EVNR--LARFRSAPATWLDTLLEEEEGEEEDDDSLKP 42

Query: 56  NQCLTQLLSSGDPVSVTAGLSLSQSQLDQV------GFQRQNSSPADLF------DGYFS 103
            Q LTQLL+     +  +G  +  S           GF RQ+S P +        +GYFS
Sbjct: 43  TQSLTQLLAGSGGPAGGSGGYIPASDPSMFDGAGAQGFLRQSSLPTEFLSQINSSEGYFS 102

Query: 104 NYATPSSYDY-----VDVSPNSNKRAREDNNTQFPSPTAKLNFHSHLKVEQSGQVPGGVS 158
           ++  P+ +DY     VD SP + KRARE       S ++   F S  K EQS ++ G V+
Sbjct: 103 SFGIPAGFDYAASPAVDGSP-TGKRARE-----LESRSSSRKFSSQSKGEQSSRLTGSVA 156

Query: 159 NLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTN 218
           +L+D+DMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQ+LVPNMDKQTN
Sbjct: 157 SLLDVDMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTN 216

Query: 219 TADMLEEAVEYVKFLQKQIEILS 241
           TADMLEEAVEYVKFLQ++I+ LS
Sbjct: 217 TADMLEEAVEYVKFLQQKIQELS 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2141573	262	FBH2 "AT4G09180" [Arabidopsis	0.698	0.759	0.520	2.4e-44
TAIR|locus:2008693	259	FBH1 "AT1G35460" [Arabidopsis	0.666	0.733	0.495	9.3e-43
TAIR|locus:2026037	379	FBH3 "AT1G51140" [Arabidopsis	0.284	0.213	0.617	2.7e-25
TAIR|locus:2059979	359	FBH4 "AT2G42280" [Arabidopsis	0.571	0.454	0.411	4.2e-24
TAIR|locus:505006103	362	AT1G05805 "AT1G05805" [Arabido	0.364	0.287	0.513	1.1e-22
UNIPROTKB|Q8S490	150	rau1 "Transcription factor RAU	0.280	0.533	0.609	3.9e-21
UNIPROTKB|Q7XT55	218	OSJNBa0084K20.3 "OSJNBa0076N16	0.396	0.518	0.463	5.8e-18
UNIPROTKB|Q6Z7E7	524	P0020C11.18 "Putative bHLH tra	0.238	0.129	0.521	3.2e-11
TAIR|locus:2183078	173	SRS8 "AT5G33210" [Arabidopsis	0.112	0.184	0.875	3.5e-11
TAIR|locus:2147760	297	LRL3 "AT5G58010" [Arabidopsis	0.238	0.228	0.507	4.6e-10

TAIR|locus:2141573 FBH2 "AT4G09180" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 114/219 (52%), Positives = 139/219 (63%)

Query:    37 PASWIDAXXXXXXXDPLKPNQCLTQLLS--SGD-PVSVTA---GLSLSQSQLDQVGFQRQ 90
             PA+W++A       + LKPN  LT LL+  S D P S  +    + + Q    Q GF RQ
Sbjct:    36 PATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGLYQQGGFHRQ 95

Query:    91 NSSPADLF---DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQFPSPTAKLNFHS 143
             NS+PAD     DG+  ++   ++YDY    +DVSP S KR+RE     F SP     F S
Sbjct:    96 NSTPADFLSGSDGFIQSFGIQANYDYLSGNIDVSPGS-KRSRE-MEALFSSP----EFTS 149

Query:   144 HLKVEQS-GQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAEXXXXXXXXXX 202
              +K EQS GQVP GVS++ DM+ME L+EDSV  RVRAKRGCATHPRSIAE          
Sbjct:   150 QMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDR 209

Query:   203 XXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
               KLQ+LVPNMDKQTNTADMLEEAVEYVK LQ+QI+ L+
Sbjct:   210 IRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELT 248

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2008693 FBH1 "AT1G35460" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 113/228 (49%), Positives = 138/228 (60%)

Query:    37 PASWIDAXXXXXXXDPLKPNQCLTQLLS----SGDPVSVTAGLSLSQSQLDQV------- 85
             PA+WI+        + LKPN CLT+LL+    SG  ++         S ++Q        
Sbjct:    33 PATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQG 92

Query:    86 -GFQRQNSSPADLF-------DGYFSNYATPSSYDY----VDVSPNSNKRAREDNNTQFP 133
              GF RQNSSPAD         DGYFSN+  P++YDY    VD+SP   KR+R D  TQF 
Sbjct:    93 GGFHRQNSSPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDISPT--KRSR-DMETQFS 149

Query:   134 SPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIAEX 193
             S          LK EQ   + GG+S ++DM+M+K+ EDSVPCRVRAKRGCATHPRSIAE 
Sbjct:   150 S---------QLKEEQ---MSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAER 197

Query:   194 XXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
                        +LQ+LVPNMDKQTNTADMLEEAVEYVK LQ QI+ L+
Sbjct:   198 VRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELT 245

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2026037 FBH3 "AT1G51140" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query:   164 DMEKLLEDSVPCRVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADML 223
             D+E+LL DS+PC++RAKRGCATHPRSIAE            KLQDLVPNMD QTNTADML
Sbjct:   291 DIEQLLSDSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADML 350

Query:   224 EEAVEYVKFLQKQIEILSYGR 244
             + AV+Y+K LQ+Q++ L   R
Sbjct:   351 DLAVQYIKDLQEQVKALEESR 371

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2059979 FBH4 "AT2G42280" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 72/175 (41%), Positives = 98/175 (56%)

Query:    76 SLSQSQLDQVGFQRQNSSPADLFDGYFSNYATPSSYDYVDVSPNSNKRAREDNNTQF--- 132
             SLS      +G   Q    A   +  +S++  PSS+  +D + +S KR  ED+   F   
Sbjct:   178 SLSSRPPSSLGMLSQIPEIAPETNFPYSHWNDPSSF--ID-NLSSLKREAEDDGKLFLGA 234

Query:   133 ---PSPTAKLNFHSHLKVEQSGQVPGGVSNLVDMDMEKLLEDSVPCRVRAKRGCATHPRS 189
                 S         HL + +S       S++V +D    L+DSVPC++RAKRGCATHPRS
Sbjct:   235 QNGESGNRMQLLSHHLSLPKSSST---ASDMVSVDKYLQLQDSVPCKIRAKRGCATHPRS 291

Query:   190 IAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGR 244
             IAE            KLQ+LVPNMDKQTNT+DML+ AV+Y+K LQ+Q +IL+  R
Sbjct:   292 IAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNR 346

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:505006103 AT1G05805 "AT1G05805" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 56/109 (51%), Positives = 72/109 (66%)

Query:   133 PSPTAKLNFHSHLKVEQSGQVPGGVS-NLVDMDMEKLLEDSVPCRVRAKRGCATHPRSIA 191
             PS  +K +  S L  + S  +P   S N +D  M+ L EDSVPC++RAKRGCATHPRSIA
Sbjct:   242 PSKRSK-DMDSGLFSQYS--LPSDTSMNYMDNFMQ-LPEDSVPCKIRAKRGCATHPRSIA 297

Query:   192 EXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEIL 240
             E            KLQDLVPNMDKQT+ +DML+ AV+++K LQ Q++ L
Sbjct:   298 ERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNL 346

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q8S490 rau1 "Transcription factor RAU1" [Oryza sativa (taxid:4530)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/82 (60%), Positives = 62/82 (75%)

Query:   165 MEKLLE--DSVPCRVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADM 222
             +EK L+  D+VPC++RAKRGCATHPRSIAE            KLQ+LVPNMDKQTNTADM
Sbjct:    55 IEKFLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADM 114

Query:   223 LEEAVEYVKFLQKQIEILSYGR 244
             L+ AV+Y+K LQKQ++ L+  R
Sbjct:   115 LDLAVDYIKDLQKQVKGLNDSR 136

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q7XT55 OSJNBa0084K20.3 "OSJNBa0076N16.1 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 57/123 (46%), Positives = 75/123 (60%)

Query:   126 EDNNT-QFPSPTAKLNFHSHLKVEQSGQVPGGVSNLV---DM-DMEKLLE---DSVPCRV 177
             ED+N+  F + T K   H +  +  +  +    S LV   +M  +EK L+   D VP RV
Sbjct:    77 EDSNSIVFSTSTGKSGAHGNDDIIAT--LSNYESQLVAPREMAGVEKYLQMQHDQVPFRV 134

Query:   178 RAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237
             RAKRGCATHPRSIAE            KLQ LVPNMDKQT+T+DML+ AV+++K LQ Q+
Sbjct:   135 RAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQL 194

Query:   238 EIL 240
             + L
Sbjct:   195 QTL 197

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6Z7E7 P0020C11.18 "Putative bHLH transcription factor PTF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 163 (62.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 36/69 (52%), Positives = 45/69 (65%)

Query:   176 RVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
             RVRA+RG AT P SIAE             LQ+LVPN +K TN A ML+E ++YVKFLQ 
Sbjct:   313 RVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNK-TNKASMLDEIIDYVKFLQL 371

Query:   236 QIEILSYGR 244
             Q+++LS  R
Sbjct:   372 QVKVLSMSR 380

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2183078 SRS8 "AT5G33210" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 28/32 (87%), Positives = 31/32 (96%)

Query:   161 VDMDMEKLLEDSVPCRVRAKRGCATHPRSIAE 192
             +DM+MEK+ EDSVPCRVRAKRGCATHPRSIAE
Sbjct:     1 MDMNMEKIFEDSVPCRVRAKRGCATHPRSIAE 32

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147760 LRL3 "AT5G58010" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 35/69 (50%), Positives = 45/69 (65%)

Query:   176 RVRAKRGCATHPRSIAEXXXXXXXXXXXXKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235
             RVRA+RG AT P SIAE             LQ+LVPN +K T+ A ML+E +EYV+FLQ 
Sbjct:    98 RVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEIIEYVRFLQL 156

Query:   236 QIEILSYGR 244
             Q+++LS  R
Sbjct:   157 QVKVLSMSR 165

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0080147 "root hair cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C8P8	BH080_ARATH	No assigned EC number	0.5767	0.7122	0.7837	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIX000729 hypothetical protein (246 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	4e-12
smart00353	53	smart00353, HLH, helix loop helix domain	8e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	5e-09

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238
             ++ ER RR RI+D   +L+ L+P +   K+ + A++L +AV+Y+K LQ+ ++
Sbjct: 7   AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 56.1 bits (136), Expect = 8e-11
 Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 189 SIAERVRRTRISDRIRKLQDLVP--NMDKQTNTADMLEEAVEYVKFLQKQIE 238
           +  ER RR +I++   +L+ L+P    +K+ + A++L  A+EY+K LQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 50.9 bits (123), Expect = 5e-09
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPN-MDKQTNTADMLEEAVEYVKFLQ 234
           +  ER RR RI+D   +L++L+P   +K+ + A++L  A+EY+K LQ
Sbjct: 6   NERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.39
smart00353	53	HLH helix loop helix domain.	99.33
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.3
KOG1318	411	consensus Helix loop helix transcription factor EB	99.28
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.92
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.26
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.22
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.21
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.94
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.61
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.31
PLN03217	93	transcription factor ATBS1; Provisional	97.04
KOG0561	373	consensus bHLH transcription factor [Transcription	96.9
KOG3910	632	consensus Helix loop helix transcription factor [T	95.22
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	91.49
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	86.49

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.39  E-value=3.9e-13  Score=95.85  Aligned_cols=53  Identities=36%  Similarity=0.661  Sum_probs=48.8

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQI  237 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QV  237 (285)
                      +..|+..||+||++||+.|..|+.+||..  ..++||++||..||+||++|+.++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999999999999999  245999999999999999999986

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.33  E-value=2.5e-12  Score=90.36  Aligned_cols=50  Identities=34%  Similarity=0.664  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 023215          189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE  238 (285)
Q Consensus       189 siaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QVq  238 (285)
                      +..||+||++||+.|..|+.+||.+  ..+++|++||.+||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999963  2348999999999999999999886

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.30  E-value=3.9e-12  Score=90.85  Aligned_cols=48  Identities=35%  Similarity=0.639  Sum_probs=44.6

Q ss_pred             CccHHHHHHHHHHHHHHHHHhccCCCC----CCCCChhhHHHHHHHHHHHHH
Q 023215          187 PRSIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ  234 (285)
Q Consensus       187 ~HsiaERrRRerIneri~~Lq~LVP~~----~K~~DKAsIL~eAI~YIK~LQ  234 (285)
                      .|+..||+||++||+.|..|+.+||.+    ..+++|++||..||+||++||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999987    235899999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.28  E-value=3.4e-12  Score=125.04  Aligned_cols=65  Identities=25%  Similarity=0.478  Sum_probs=57.9

Q ss_pred             ccccccccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHH
Q 023215          175 CRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEI  239 (285)
Q Consensus       175 ~~~raKrg~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K---~~DKAsIL~eAI~YIK~LQ~QVq~  239 (285)
                      .....|.+++++.|+++|||||++||++|++|..|||.|..   +++|..||..+++||+.||+..+.
T Consensus       224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~  291 (411)
T KOG1318|consen  224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR  291 (411)
T ss_pred             cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence            45566788888999999999999999999999999999843   378999999999999999987773

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.92  E-value=4.5e-10  Score=101.19  Aligned_cols=61  Identities=26%  Similarity=0.425  Sum_probs=53.4

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCCCC------CCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIEILSYGRN  245 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~K------~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~  245 (285)
                      +..|..+||+||+.|+..+..|++|||.|..      ++.||.||..+|+||.+|+.++.+.+.+..
T Consensus        63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s  129 (229)
T KOG1319|consen   63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS  129 (229)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999998754      266999999999999999999888776543

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.26  E-value=5.4e-07  Score=95.75  Aligned_cols=67  Identities=30%  Similarity=0.453  Sum_probs=59.6

Q ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 023215          182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRNSQS  248 (285)
Q Consensus       182 g~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~~~s  248 (285)
                      +.++.+||++|||-|..|||||.+|+++||+..-++.|..+|..||+||++|+...+.+........
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            4567899999999999999999999999998877799999999999999999999888877655433

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.22  E-value=1.2e-06  Score=92.28  Aligned_cols=52  Identities=25%  Similarity=0.480  Sum_probs=48.8

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQKQ  236 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~---K~~DKAsIL~eAI~YIK~LQ~Q  236 (285)
                      +.+|+.+|||||+++|.-|.+|-+|||.+.   .|+||-+||.+||++||.++.+
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            678999999999999999999999999998   5699999999999999988875

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.21  E-value=6e-07  Score=83.39  Aligned_cols=55  Identities=31%  Similarity=0.499  Sum_probs=47.2

Q ss_pred             CccHHHHHHHHHHHHHHHHHhccCCCCCC-------CCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215          187 PRSIAERVRRTRISDRIRKLQDLVPNMDK-------QTNTADMLEEAVEYVKFLQKQIEILS  241 (285)
Q Consensus       187 ~HsiaERrRRerIneri~~Lq~LVP~~~K-------~~DKAsIL~eAI~YIK~LQ~QVq~Le  241 (285)
                      .|-+.|||||.|||+-|.+|++|||-+.+       +++||.||+-||+|++.||.+...--
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~   96 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA   96 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence            46789999999999999999999996543       27899999999999999998765433

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.94  E-value=2.2e-05  Score=72.55  Aligned_cols=59  Identities=24%  Similarity=0.391  Sum_probs=49.8

Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHhc
Q 023215          184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQT--NTADMLEEAVEYVKFLQKQIEILSY  242 (285)
Q Consensus       184 a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~--DKAsIL~eAI~YIK~LQ~QVq~Le~  242 (285)
                      ++..||..||+||..|++.|..|+.+||.....+  +.++||+.|+.||+.|+.+..+.+.
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~  119 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ  119 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence            4557999999999999999999999999765532  2689999999999999887666554

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.61  E-value=0.00014  Score=68.40  Aligned_cols=58  Identities=17%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHhc-cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215          188 RSIAERVRRTRISDRIRKLQD-LVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRN  245 (285)
Q Consensus       188 HsiaERrRRerIneri~~Lq~-LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~  245 (285)
                      -++-||||-.|+||-|.+|+. -+++-+.++-|+.||..||+||..||.-++++.++..
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            457799999999999999964 5677777789999999999999999999998887543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.31  E-value=0.00024  Score=64.32  Aligned_cols=58  Identities=22%  Similarity=0.385  Sum_probs=51.0

Q ss_pred             CccHHHHHHHHHHHHHHHHHhccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215          187 PRSIAERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFLQKQIEILSYGR  244 (285)
Q Consensus       187 ~HsiaERrRRerIneri~~Lq~LVP~~---~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~  244 (285)
                      .++..||.|=+.+|..|..||.+||..   +|++.|..+|..||.||++|++-++.-+..+
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            456679999999999999999999953   5669999999999999999999888777665

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.04  E-value=0.0013  Score=53.29  Aligned_cols=53  Identities=28%  Similarity=0.545  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHhccCCCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215          193 RVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIEILSYGRN  245 (285)
Q Consensus       193 RrRRerIneri~~Lq~LVP~~~K-----~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~  245 (285)
                      |---+.|+|-+..||.|+|....     +...+-||.|+..||+.||.+|..|.+...
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs   73 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS   73 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457899999999999996422     246788999999999999999999987544

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=96.90  E-value=0.00046  Score=66.65  Aligned_cols=53  Identities=23%  Similarity=0.402  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215          189 SIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEILS  241 (285)
Q Consensus       189 siaERrRRerIneri~~Lq~LVP~~~-K~~DKAsIL~eAI~YIK~LQ~QVq~Le  241 (285)
                      |-.||||=+-||-.|..|+.|+|.-. .++.||.||+.+.+||..|+.+.-+|-
T Consensus        65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll  118 (373)
T KOG0561|consen   65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL  118 (373)
T ss_pred             cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence            45799999999999999999999532 248999999999999999987655443

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.22  E-value=0.025  Score=57.99  Aligned_cols=55  Identities=20%  Similarity=0.314  Sum_probs=45.4

Q ss_pred             CccHHHHHHHHHHHHHHHHHhccCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 023215          187 PRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEILS  241 (285)
Q Consensus       187 ~HsiaERrRRerIneri~~Lq~LVP~---~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le  241 (285)
                      ..+..||.|=.-||+-|++|..+.=-   .+|.-.|--||..||.-|-.|++||.+-.
T Consensus       529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            45777999999999999999987652   33333689999999999999999998744

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=91.49  E-value=0.095  Score=46.68  Aligned_cols=48  Identities=25%  Similarity=0.490  Sum_probs=42.6

Q ss_pred             CccHHHHHHHHHHHHHHHHHhccCCC--CCCCCChhhHHHHHHHHHHHHHH
Q 023215          187 PRSIAERVRRTRISDRIRKLQDLVPN--MDKQTNTADMLEEAVEYVKFLQK  235 (285)
Q Consensus       187 ~HsiaERrRRerIneri~~Lq~LVP~--~~K~~DKAsIL~eAI~YIK~LQ~  235 (285)
                      -|++-||+|=..+|+-|.+||.+||.  .+| ..|.-.|.-|-.||-||-.
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence            47889999999999999999999995  455 7888899999999999865

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=86.49  E-value=0.38  Score=51.15  Aligned_cols=42  Identities=21%  Similarity=0.481  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCC---CCCCChhhHHHHHHHHHHH
Q 023215          191 AERVRRTRISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKF  232 (285)
Q Consensus       191 aERrRRerIneri~~Lq~LVP~~---~K~~DKAsIL~eAI~YIK~  232 (285)
                      |.|.||.|=|+-|.+|..++|--   .-++|||+|+.-||-|+|-
T Consensus        53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            68999999999999999999932   2258999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.67
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.64
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.57
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.54
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.54
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.48
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.43
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.42
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.4
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.39
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.22
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.04
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.02
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.91
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.89
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.81
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.43
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.9

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.67  E-value=7.1e-17  Score=132.53  Aligned_cols=70  Identities=29%  Similarity=0.437  Sum_probs=51.6

Q ss_pred             CccccccccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 023215          174 PCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEILSYG  243 (285)
Q Consensus       174 ~~~~raKrg~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K---~~DKAsIL~eAI~YIK~LQ~QVq~Le~~  243 (285)
                      +++..+|+++++.+|+++||+||++||++|.+|++|||++.+   +++|++||.+||+||++||.+++.|+..
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888899999999999999999999999999998853   4789999999999999999999999864

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.64  E-value=4.8e-17  Score=125.63  Aligned_cols=63  Identities=27%  Similarity=0.434  Sum_probs=57.0

Q ss_pred             CCCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215          183 CATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRN  245 (285)
Q Consensus       183 ~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~  245 (285)
                      .++.+|+++||+||++||++|.+|++|||+++.++||++||.+||+||++||.+++.|+.+..
T Consensus         5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~   67 (82)
T 1am9_A            5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL   67 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345679999999999999999999999999855599999999999999999999999997543

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.57  E-value=1.1e-15  Score=116.50  Aligned_cols=62  Identities=15%  Similarity=0.337  Sum_probs=54.6

Q ss_pred             ccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 023215          181 RGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSY  242 (285)
Q Consensus       181 rg~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~  242 (285)
                      ...++.+|+++||+||++||++|.+|++|||....++||++||..||+||+.||.++.=|+-
T Consensus         5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~   66 (71)
T 4h10_B            5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH   66 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            34455689999999999999999999999997664599999999999999999999877653

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.54  E-value=1.5e-15  Score=111.82  Aligned_cols=56  Identities=21%  Similarity=0.385  Sum_probs=50.3

Q ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCC-----CCChhhHHHHHHHHHHHHHHHH
Q 023215          182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQI  237 (285)
Q Consensus       182 g~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K-----~~DKAsIL~eAI~YIK~LQ~QV  237 (285)
                      ..++..|+++||+||++||+.|.+|++|||.+..     +++|++||.+||+||++||.++
T Consensus         3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999998862     3899999999999999999875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.54  E-value=8.9e-16  Score=113.83  Aligned_cols=55  Identities=27%  Similarity=0.423  Sum_probs=48.6

Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 023215          184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIE  238 (285)
Q Consensus       184 a~~~HsiaERrRRerIneri~~Lq~LVP~~~K------~~DKAsIL~eAI~YIK~LQ~QVq  238 (285)
                      ++.+|+++||+||++||..|.+|+.|||.+.+      +++||+||+.||+||++||++|+
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            45789999999999999999999999997632      36799999999999999998763

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.48  E-value=4e-15  Score=113.52  Aligned_cols=56  Identities=27%  Similarity=0.381  Sum_probs=48.9

Q ss_pred             cccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCC---CCCChhhHHHHHHHHHHHHHH
Q 023215          180 KRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQK  235 (285)
Q Consensus       180 Krg~a~~~HsiaERrRRerIneri~~Lq~LVP~~~---K~~DKAsIL~eAI~YIK~LQ~  235 (285)
                      |..+++..|+++||+||++||+.|.+|+.|||.+.   .++||++||+.||+||+.|+.
T Consensus         5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            34455678999999999999999999999999873   239999999999999999974

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.43  E-value=1.4e-13  Score=105.65  Aligned_cols=58  Identities=28%  Similarity=0.527  Sum_probs=53.1

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEILSYGR  244 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~  244 (285)
                      ..|+..||+||++||+.|..|+++||.+  .| ++|++||..||+||++|+.+++.|+...
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~   63 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDI   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975  55 9999999999999999999999988643

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.42  E-value=1.3e-13  Score=105.38  Aligned_cols=60  Identities=25%  Similarity=0.495  Sum_probs=54.1

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEILSYGR  244 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~-K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~  244 (285)
                      +..|+..||+||..||+.|..|+.|||.+. .+++|++||..||+||++||.+++.|+...
T Consensus        13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~   73 (80)
T 1hlo_A           13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   73 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346999999999999999999999999863 239999999999999999999999998754

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.40  E-value=1.8e-13  Score=105.06  Aligned_cols=59  Identities=24%  Similarity=0.304  Sum_probs=50.5

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEILSYG  243 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~---~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~  243 (285)
                      +..|+..||+||+.||+.|.+|+.+||.   ..|.+.|+.||..||+||++||.++++++.-
T Consensus         6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~   67 (76)
T 3u5v_A            6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN   67 (76)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4579999999999999999999999995   3443479999999999999999999998763

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.39  E-value=3.5e-13  Score=105.51  Aligned_cols=58  Identities=21%  Similarity=0.380  Sum_probs=52.5

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEILSYG  243 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~~--K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~  243 (285)
                      ..|+..||+||+.||+.|..|+++||.+.  .+++|++||.+||+||++|+.+.+.|...
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~   67 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE   67 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999863  34999999999999999999999887764

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.22  E-value=1.4e-11  Score=95.12  Aligned_cols=58  Identities=22%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEILSYG  243 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~~--K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~  243 (285)
                      ..|+..||+||..||+.|..|+++||.+.  .+++|+.||..||+||+.|+.+.+.|...
T Consensus         3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e   62 (80)
T 1nlw_A            3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ   62 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35999999999999999999999999652  23789999999999999999999998874

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.04  E-value=6e-11  Score=89.31  Aligned_cols=53  Identities=17%  Similarity=0.380  Sum_probs=47.2

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNM-DKQTNTADMLEEAVEYVKFLQKQI  237 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~-~K~~DKAsIL~eAI~YIK~LQ~QV  237 (285)
                      +..|+..||+|+..||+.|..|+++||.. +++++|..+|..||+||.+||+.+
T Consensus        13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999999999964 345899999999999999999865

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.02  E-value=2.4e-10  Score=105.54  Aligned_cols=58  Identities=16%  Similarity=0.389  Sum_probs=42.5

Q ss_pred             cccCCCCCccHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 023215          180 KRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI  237 (285)
Q Consensus       180 Krg~a~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QV  237 (285)
                      |...++.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus         8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A            8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            3445567899999999999999999999999944444999999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.91  E-value=1.4e-09  Score=79.86  Aligned_cols=52  Identities=19%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             CccHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 023215          187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE  238 (285)
Q Consensus       187 ~HsiaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QVq  238 (285)
                      .|+.-||+|+..||+.|..|+.+||..  ++++.|..+|..||+||++|++.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            378889999999999999999999975  3468999999999999999998753

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.89  E-value=4.6e-10  Score=105.19  Aligned_cols=56  Identities=29%  Similarity=0.340  Sum_probs=48.4

Q ss_pred             cccCCCCCccHHHHHHHHHHHHHHHHHhccCC----CCCCCCChhhHHHHHHHHHHHHHHH
Q 023215          180 KRGCATHPRSIAERVRRTRISDRIRKLQDLVP----NMDKQTNTADMLEEAVEYVKFLQKQ  236 (285)
Q Consensus       180 Krg~a~~~HsiaERrRRerIneri~~Lq~LVP----~~~K~~DKAsIL~eAI~YIK~LQ~Q  236 (285)
                      |.+.++.+|+.+||+||++||+.|.+|+.|||    ...| +||++||..||.|||.|+..
T Consensus         9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B            9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence            34555678999999999999999999999999    4555 99999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.81  E-value=4.9e-09  Score=82.11  Aligned_cols=49  Identities=29%  Similarity=0.483  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 023215          195 RRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEILSYG  243 (285)
Q Consensus       195 RRerIneri~~Lq~LVP~~~K---~~DKAsIL~eAI~YIK~LQ~QVq~Le~~  243 (285)
                      -|..||++|++|..|||.+..   +++|++||..||+||++||++++.+...
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~   54 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   54 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999997532   3899999999999999999988877753

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.43  E-value=8.3e-08  Score=72.70  Aligned_cols=46  Identities=20%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 023215          190 IAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQK  235 (285)
Q Consensus       190 iaERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~  235 (285)
                      .-||+|...||+-|..||.+||..  ++++.|..+|..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            348899999999999999999965  4468999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.90  E-value=2.2e-05  Score=63.07  Aligned_cols=51  Identities=22%  Similarity=0.369  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 023215          192 ERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEILSY  242 (285)
Q Consensus       192 ERrRRerIneri~~Lq~LVP~~--~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~  242 (285)
                      ||.|=..||+-|..||.+||..  ++++.|..+|.-||+||++|+..++.-..
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~   85 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5778889999999999999965  45689999999999999999998766443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	1e-14
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-13
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	2e-11
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	3e-11
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	8e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	2e-10
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	1e-09
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	3e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (159), Expect = 1e-14
 Identities = 16/46 (34%), Positives = 31/46 (67%)

Query: 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILS 241
           R+ I+D+I +L+DLV   D + + + +L +A++Y+K+LQ+    L 
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLR 46

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (149), Expect = 4e-13
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 180 KRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEI 239
            RG      +  E+  R+ I+D+I +L+DLV   + + N + +L +A++Y++FLQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 240 LSYGRNSQSIRGDANARQK 258
           L     S       +   K
Sbjct: 62  LKQENLSLRTAVHKSKSLK 80

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 176 RVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFL 233
            +  KR   TH  ++ ER RR  +      L+D +P +  +++     +L++A  Y+  +
Sbjct: 2   HMNVKR--RTH--NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 234 QKQIEILS 241
           Q + + L 
Sbjct: 58  QAEEQKLI 65

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPNMDKQTN------TADMLEEAVEYVKFLQKQIE 238
             AE+ RR R++  + +L  L+P   KQ N       A  +E A  Y++ LQ+   
Sbjct: 7   KHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (132), Expect = 8e-11
 Identities = 10/51 (19%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 189 SIAERVRRTRISDRIRKLQDLVP-NMDKQTNTADMLEEAVEYVKFLQKQIE 238
           ++ ER R +++++    L+     N +++    ++L  A+ Y++ LQ  + 
Sbjct: 17  TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 188 RSIAERVRRTRISDRIRKLQDLV-PNMDKQTNTADMLEEAVEYVKFLQKQIEIL 240
            +  ER RR  I D    L+D V     ++ + A +L++A EY+++++++    
Sbjct: 6   HNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPNM-----DKQTNTADMLEEAVEYVKFLQKQ 236
           +  ER RR +I++ I +L  ++P+          +   +L +A +Y++ L++ 
Sbjct: 10  NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 189 SIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEIL 240
           +  E+ RR  +   + KL+ LVP      +  T  +L +A  ++K L+      
Sbjct: 6   NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.49
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.48
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.37
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.37

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-15  Score=114.61  Aligned_cols=61  Identities=28%  Similarity=0.467  Sum_probs=55.7

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRN  245 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~  245 (285)
                      +..|+.+||+||++||+.|..|++|||++..+++|++||..||+||++|+.+++.|.....
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~   67 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL   67 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999999999999999876699999999999999999999999987543

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=7e-15  Score=106.43  Aligned_cols=53  Identities=26%  Similarity=0.453  Sum_probs=47.3

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNM------DKQTNTADMLEEAVEYVKFLQKQI  237 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~------~K~~DKAsIL~eAI~YIK~LQ~QV  237 (285)
                      +..|+++||+||++||+.|..|++|||.+      ..+++|++||+.||+||++||++|
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999999999999952      234899999999999999999875

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=3.6e-15  Score=109.79  Aligned_cols=53  Identities=17%  Similarity=0.366  Sum_probs=48.2

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIE  238 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~~-K~~DKAsIL~eAI~YIK~LQ~QVq  238 (285)
                      ..|++.||+||++||+.|.+|++|||.+. ++++|++||..||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999999864 348999999999999999998764

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=103.57  Aligned_cols=59  Identities=22%  Similarity=0.195  Sum_probs=52.9

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEILSYGR  244 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~~--K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~  244 (285)
                      ..|+..||+||++||+.|.+|++|||++.  .+++|++||..||+||++|+.+++.|....
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   63 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI   63 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999753  238999999999999999999999987643

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.3e-14  Score=103.30  Aligned_cols=50  Identities=32%  Similarity=0.534  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcccC
Q 023215          196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEILSYGRN  245 (285)
Q Consensus       196 RerIneri~~Lq~LVP~~~K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~~  245 (285)
                      |++||++|.+|++|||++.+++||++||.+||+||++||.+++.|+.++.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~   50 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENM   50 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875699999999999999999999999987543

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=103.90  Aligned_cols=59  Identities=25%  Similarity=0.505  Sum_probs=53.0

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEILSYGR  244 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~~-K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~  244 (285)
                      ..|+..||+||++||+.|..|++|||.+. ++++|++||..||+||++|+.+++.|....
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   63 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999652 348999999999999999999999988643

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.4e-13  Score=103.30  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=53.1

Q ss_pred             CCccHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhccc
Q 023215          186 HPRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEILSYGR  244 (285)
Q Consensus       186 ~~HsiaERrRRerIneri~~Lq~LVP~~~--K~~DKAsIL~eAI~YIK~LQ~QVq~Le~~~  244 (285)
                      ..|+.+||+||++||+.|..|++|||++.  .+++|++||..||+||++|+.+++.|....
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~   68 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999753  248999999999999999999999997743

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.9e-14  Score=100.83  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=47.1

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 023215          185 THPRSIAERVRRTRISDRIRKLQDLVPNMD-----KQTNTADMLEEAVEYVKFLQKQI  237 (285)
Q Consensus       185 ~~~HsiaERrRRerIneri~~Lq~LVP~~~-----K~~DKAsIL~eAI~YIK~LQ~QV  237 (285)
                      +..|+.+||+||++||+.|.+|++|||.+.     .+++|++||..||+||+.||++.
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999999753     14899999999999999999753