Citrus Sinensis ID: 023218

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR
cHHHHHHHHHcccHHHHHccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccHHHHHHHHHccEEEEcccccccccccccHHHHHHHHcccEEEcccccccccccccccccEEEEEEccccccccccEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccEEEEEEccccccHHHHHHHHHHHHccccccEEEEccccHHHHHHHcccccHHHHHHHHHHcEEEEcccccccccccccHHHHHHHHccccEEEEEcccccccccccccccEEEEEEcccccEccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHcHHHccEEEEcHHHHHHHHHHHHHHHccHHHccc
MATQLLRRVLgsrsrqilsttnpnpnlalpiarafssditpitatlfpgdgigpEIAESVKQVFRTaevpveweehyvgteidprtqsfltWESLESVRrnkvglkgpmatpigkghrslNLTLRKELNLyanvrpcyslpgyktryddvNLITIRentegeysgleHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMmlvknpaafdvlvmpnlygDIISDLCAGligglgltpr
MATQLLRRvlgsrsrqilsttnpnpnlalPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEweehyvgteidprtqsflTWESLEsvrrnkvglkgpmatpigkghrslNLTLRKELNLYANVRpcyslpgyktrydDVNLITIRENtegeysglehqVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIgglgltpr
MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR
**************************LALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGL***
*****************************************ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP*
MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR
********************************R*FSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
Q945K7374 Isocitrate dehydrogenase yes no 0.996 0.759 0.897 1e-146
P29696357 3-isopropylmalate dehydro N/A no 0.971 0.775 0.849 1e-141
Q8LG77374 Isocitrate dehydrogenase no no 0.996 0.759 0.802 1e-136
Q9VWH4377 Probable isocitrate dehyd yes no 0.880 0.665 0.604 1e-92
Q55BI2354 Isocitrate dehydrogenase yes no 0.863 0.694 0.612 1e-91
Q9D6R2366 Isocitrate dehydrogenase yes no 0.884 0.688 0.574 1e-85
P41563366 Isocitrate dehydrogenase yes no 0.884 0.688 0.570 3e-85
P50213366 Isocitrate dehydrogenase yes no 0.884 0.688 0.570 6e-85
Q5R678366 Isocitrate dehydrogenase yes no 0.884 0.688 0.570 6e-85
Q28480347 Isocitrate dehydrogenase N/A no 0.884 0.726 0.566 1e-84
>sp|Q945K7|IDH5_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1 Back     alignment and function desciption
 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/284 (89%), Positives = 264/284 (92%)

Query: 1   MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESV 60
           MA  L RR++G+RS QIL   N +   A  +ARAF S  TPITATLFPGDGIGPEIAESV
Sbjct: 3   MAANLARRLIGNRSTQILGAVNSSSGAASSVARAFCSSTTPITATLFPGDGIGPEIAESV 62

Query: 61  KQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 120
           K+VF TA VP+EWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL
Sbjct: 63  KKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 122

Query: 121 NLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI 180
           NLTLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVVRGVVESLKI
Sbjct: 123 NLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKI 182

Query: 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 240
           ITRQASLRVAEYAF YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV
Sbjct: 183 ITRQASLRVAEYAFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 242

Query: 241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
           VIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGL+GGLGLTP
Sbjct: 243 VIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTP 286
Performs an essential role in the oxidative function of the citric acid cycle.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 1
>sp|P29696|LEU3_SOLTU 3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q8LG77|IDH6_ARATH Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2 Back     alignment and function description
>sp|Q9VWH4|IDH3A_DROME Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1 Back     alignment and function description
>sp|Q55BI2|IDHA_DICDI Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial OS=Dictyostelium discoideum GN=idhA PE=3 SV=1 Back     alignment and function description
>sp|Q9D6R2|IDH3A_MOUSE Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1 Back     alignment and function description
>sp|P41563|IDH3A_BOVIN Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Bos taurus GN=IDH3A PE=1 SV=1 Back     alignment and function description
>sp|P50213|IDH3A_HUMAN Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1 Back     alignment and function description
>sp|Q5R678|IDH3A_PONAB Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Pongo abelii GN=IDH3A PE=2 SV=1 Back     alignment and function description
>sp|Q28480|IDH3A_MACFA Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
TAIR|locus:2142604374 IDH-V "isocitrate dehydrogenas 0.996 0.759 0.897 1.8e-135
TAIR|locus:2074939374 IDH-VI "isocitrate dehydrogena 0.996 0.759 0.802 1.2e-122
FB|FBgn0027291377 l(1)G0156 "lethal (1) G0156" [ 0.894 0.676 0.604 2.1e-84
DICTYBASE|DDB_G0271344354 idhA "isocitrate dehydrogenase 0.863 0.694 0.608 1.7e-82
ZFIN|ZDB-GENE-040426-1007365 idh3a "isocitrate dehydrogenas 0.887 0.693 0.576 2.3e-78
UNIPROTKB|E2RHM4366 IDH3A "Isocitrate dehydrogenas 0.884 0.688 0.574 3e-78
MGI|MGI:1915084366 Idh3a "isocitrate dehydrogenas 0.884 0.688 0.574 3.8e-78
UNIPROTKB|P41563366 IDH3A "Isocitrate dehydrogenas 0.884 0.688 0.570 1e-77
UNIPROTKB|F1MN74366 IDH3A "Isocitrate dehydrogenas 0.884 0.688 0.570 1.6e-77
UNIPROTKB|P50213366 IDH3A "Isocitrate dehydrogenas 0.884 0.688 0.570 1.6e-77
TAIR|locus:2142604 IDH-V "isocitrate dehydrogenase V" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
 Identities = 255/284 (89%), Positives = 264/284 (92%)

Query:     1 MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESV 60
             MA  L RR++G+RS QIL   N +   A  +ARAF S  TPITATLFPGDGIGPEIAESV
Sbjct:     3 MAANLARRLIGNRSTQILGAVNSSSGAASSVARAFCSSTTPITATLFPGDGIGPEIAESV 62

Query:    61 KQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 120
             K+VF TA VP+EWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL
Sbjct:    63 KKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 122

Query:   121 NLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI 180
             NLTLRKELNLYANVRPCYSLPGYKTRYDDV+LITIRENTEGEYSGLEHQVVRGVVESLKI
Sbjct:   123 NLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKI 182

Query:   181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 240
             ITRQASLRVAEYAF YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV
Sbjct:   183 ITRQASLRVAEYAFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 242

Query:   241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
             VIDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGL+GGLGLTP
Sbjct:   243 VIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTP 286
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004449 "isocitrate dehydrogenase (NAD+) activity" evidence=IEA;ISS;IMP
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA;TAS
GO:0008152 "metabolic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0006102 "isocitrate metabolic process" evidence=IMP
GO:0008270 "zinc ion binding" evidence=IDA
GO:0009735 "response to cytokinin stimulus" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0043248 "proteasome assembly" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
TAIR|locus:2074939 IDH-VI "isocitrate dehydrogenase VI" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0027291 l(1)G0156 "lethal (1) G0156" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271344 idhA "isocitrate dehydrogenase (NAD+) alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1007 idh3a "isocitrate dehydrogenase 3 (NAD+) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHM4 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1915084 Idh3a "isocitrate dehydrogenase 3 (NAD+) alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P41563 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN74 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P50213 IDH3A "Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R678IDH3A_PONAB1, ., 1, ., 1, ., 4, 10.57080.88420.6885yesno
Q945K7IDH5_ARATH1, ., 1, ., 1, ., 4, 10.89780.99640.7593yesno
Q9VWH4IDH3A_DROME1, ., 1, ., 1, ., 4, 10.60470.88070.6657yesno
P41563IDH3A_BOVIN1, ., 1, ., 1, ., 4, 10.57080.88420.6885yesno
Q9USP8IDH2_SCHPO1, ., 1, ., 1, ., 4, 10.57780.84560.6358yesno
P29696LEU3_SOLTU1, ., 1, ., 1, ., 8, 50.84960.97190.7759N/Ano
Q93714IDH3A_CAEEL1, ., 1, ., 1, ., 4, 10.59330.83850.6675yesno
Q9D6R2IDH3A_MOUSE1, ., 1, ., 1, ., 4, 10.57480.88420.6885yesno
P50213IDH3A_HUMAN1, ., 1, ., 1, ., 4, 10.57080.88420.6885yesno
Q99NA5IDH3A_RAT1, ., 1, ., 1, ., 4, 10.57310.88070.6857yesno
O94230IDH2_KLULA1, ., 1, ., 1, ., 4, 10.51200.83500.6467yesno
Q55BI2IDHA_DICDI1, ., 1, ., 1, ., 4, 10.61260.86310.6949yesno
P28241IDH2_YEAST1, ., 1, ., 1, ., 4, 10.53620.83500.6449yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.976
4th Layer1.1.1.850.991
4th Layer1.1.1.410.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__235__AT5G03290.1
annotation not avaliable (373 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
Al_scaffold_0009_13
annotation not avaliable (508 aa)
•    •• 0.865
fgenesh2_kg.4__2470__AT2G43090.1
annotation not avaliable (251 aa)
•    •• 0.655
fgenesh2_kg.5__1206__AT3G48560.1
AT3G48560 (664 aa)
•    •• 0.622
scaffold_503094.1
annotation not avaliable (253 aa)
•    •• 0.565
fgenesh2_kg.3__3571__AT2G20420.1
annotation not avaliable (421 aa)
•  •• • 0.547
fgenesh2_kg.4__2471__AT2G43100.1
annotation not avaliable (255 aa)
•    •• 0.539
Al_scaffold_0003_3514
annotation not avaliable (401 aa)
•     • 0.507
scaffold_302965.1
annotation not avaliable (609 aa)
•     • 0.488
mama
Methylthioalkylmalate synthase a (507 aa)
•     • 0.423
mamb
Methylthioalkylmalate synthase b (502 aa)
•     • 0.423

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 0.0
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 1e-135
PLN00123360 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+ 1e-112
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 1e-107
PRK08997334 PRK08997, PRK08997, isocitrate dehydrogenase; Prov 1e-101
PRK09222 482 PRK09222, PRK09222, isocitrate dehydrogenase; Vali 6e-96
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-83
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 4e-80
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 2e-72
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 4e-72
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 9e-59
TIGR00183416 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase 9e-46
PRK00772358 PRK00772, PRK00772, 3-isopropylmalate dehydrogenas 9e-45
PRK06451412 PRK06451, PRK06451, isocitrate dehydrogenase; Vali 2e-41
PRK03437344 PRK03437, PRK03437, 3-isopropylmalate dehydrogenas 7e-40
PRK07006409 PRK07006, PRK07006, isocitrate dehydrogenase; Revi 3e-37
TIGR00169346 TIGR00169, leuB, 3-isopropylmalate dehydrogenase 3e-37
TIGR02089352 TIGR02089, TTC, tartrate dehydrogenase 1e-33
PRK08194352 PRK08194, PRK08194, tartrate dehydrogenase; Provis 2e-30
PRK07362474 PRK07362, PRK07362, isocitrate dehydrogenase; Vali 3e-24
PLN02329409 PLN02329, PLN02329, 3-isopropylmalate dehydrogenas 3e-21
PLN03065 483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.002
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information 
 Score =  578 bits (1492), Expect = 0.0
 Identities = 249/284 (87%), Positives = 261/284 (91%)

Query: 1   MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESV 60
           MA QLLRR+LG+R  QIL  ++ +       ARAFSS  TPITATLFPGDGIGPEIAESV
Sbjct: 1   MAAQLLRRLLGNRLAQILGASSSSSGAFSSSARAFSSSSTPITATLFPGDGIGPEIAESV 60

Query: 61  KQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 120
           KQVF  A VP+EWEEHYVGT +DPRT SFLTWESLESVRRNKVGLKGPMATPIGKGHRSL
Sbjct: 61  KQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL 120

Query: 121 NLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKI 180
           NLTLRKEL LYANVRPCYSLPGYKTRYDDV+L+TIRENTEGEYSGLEHQVVRGVVESLKI
Sbjct: 121 NLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVVRGVVESLKI 180

Query: 181 ITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV 240
           ITRQASLRVAEYAFHYAKTHGR+RVSAIHKANIM+KTDGLFLKCCREVAEKYPEI YEEV
Sbjct: 181 ITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEV 240

Query: 241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284
           +IDNCCMMLVKNPA FDVLVMPNLYGDIISDLCAGLIGGLGLTP
Sbjct: 241 IIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTP 284

Length = 372
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|215065 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181606 PRK08997, PRK08997, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236416 PRK09222, PRK09222, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|232862 TIGR00183, prok_nadp_idh, isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>gnl|CDD|234832 PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|235803 PRK06451, PRK06451, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180792 PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|232853 TIGR00169, leuB, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|233718 TIGR02089, TTC, tartrate dehydrogenase Back     alignment and domain information
>gnl|CDD|181281 PRK08194, PRK08194, tartrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|180944 PRK07362, PRK07362, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|215188 PLN02329, PLN02329, 3-isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
PRK08299 402 isocitrate dehydrogenase; Validated 100.0
PLN00103 410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR00127 409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PLN03065 483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435 413 isocitrate dehydrogenase; Provisional 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
PLN00096 393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG1526 422 consensus NADP-dependent isocitrate dehydrogenase 99.97
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information 
Probab=100.00  E-value=6.5e-93  Score=676.80  Aligned_cols=285  Identities=87%  Similarity=1.352  Sum_probs=268.9

Q ss_pred             ChhHHHHHHhccccceecccCCCCCCCcccccccccCCCCceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccc
Q 023218            1 MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGT   80 (285)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~   80 (285)
                      ||.|||||.||.|--|++.+..-+.--=-..+|.||++..+++|++|||||||||||+++++||++++++++|+++++|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~   80 (372)
T PLN00118          1 MAAQLLRRLLGNRLAQILGASSSSSGAFSSSARAFSSSSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGT   80 (372)
T ss_pred             ChHHHHHHHhcccchhhhccccccCCCCcHHHHhhccCCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcH
Confidence            89999999999999999977655433323445778777778999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCcChhhHHHhhhcCeEEECCccCCCCCCcCchhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCC
Q 023218           81 EIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTE  160 (285)
Q Consensus        81 ~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~~~~s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnte  160 (285)
                      +.+..+++.+|+|++++|+++|++||||+++|...+++|++++|||+||||||+||||++||++++++++||||||||||
T Consensus        81 ~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~~~~s~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnte  160 (372)
T PLN00118         81 TVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTE  160 (372)
T ss_pred             HHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccccccCchHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCC
Confidence            99999999999999999999999999999999666678889999999999999999999999999999999999999999


Q ss_pred             CccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceee
Q 023218          161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEV  240 (285)
Q Consensus       161 G~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~  240 (285)
                      |+|+|.+++..+++++++++|||+++|||+|+||+||++|++|+||++||+|||+.||+||+++|+|++++||||+++|+
T Consensus       161 G~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~  240 (372)
T PLN00118        161 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEV  240 (372)
T ss_pred             CcccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEee
Confidence            99999998877889999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             eHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccCCcccCCC
Q 023218          241 VIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPR  285 (285)
Q Consensus       241 ~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pS  285 (285)
                      +||++||+||++|++||||||+|||||||||++|+++||+||+||
T Consensus       241 ~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapS  285 (372)
T PLN00118        241 IIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPS  285 (372)
T ss_pred             eHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcc
Confidence            999999999999999999999999999999999999999999998

>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
3blw_B354 Yeast Isocitrate Dehydrogenase With Citrate And Amp 1e-71
3blv_B354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 2e-71
3blw_A349 Yeast Isocitrate Dehydrogenase With Citrate And Amp 2e-64
3blv_A354 Yeast Isocitrate Dehydrogenase With Citrate Bound I 5e-62
2d1c_A 496 Crystal Structure Of Tt0538 Protein From Thermus Th 2e-52
1wpw_A336 Crystal Structure Of Ipmdh From Sulfolobus Tokodaii 1e-45
3asj_A334 Crystal Structure Of Homoisocitrate Dehydrogenase I 3e-40
1x0l_A333 Crystal Structure Of Tetrameric Homoisocitrate Dehy 3e-40
3ah3_A334 Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehyd 3e-38
1v94_A 435 Crystal Structure Of Isocitrate Dehydrogenase From 1e-36
2iv0_A412 Thermal Stability Of Isocitrate Dehydrogenase From 3e-36
3ty3_A366 Crystal Structure Of Homoisocitrate Dehydrogenase F 4e-34
1hqs_A423 Crystal Structure Of Isocitrate Dehydrogenase From 8e-33
2dht_A409 Crystal Structure Of Isocitrate Dehydrogenase From 1e-32
1v5b_A 366 The Structure Of The Mutant, S225a And E251l, Of 3- 3e-28
2ayq_A 366 3-Isopropylmalate Dehydrogenase From The Moderate F 2e-27
1v53_A 366 The Crystal Structure Of 3-Isopropylmalate Dehydrog 2e-27
1iso_A416 Isocitrate Dehydrogenase: Structure Of An Engineere 5e-27
1cw7_A416 Low Temperature Structure Of Wild-Type Idh Complexe 1e-26
1p8f_A416 A Four Location Model To Explain The Stereospecific 2e-26
1bl5_A414 Isocitrate Dehydrogenase From E. Coli Single Turnov 2e-26
1idd_A416 Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Le 4e-26
3u1h_A 390 Crystal Structure Of Ipmdh From The Last Common Anc 4e-26
6icd_A416 Regulation Of An Enzyme By Phosphorylation At The A 5e-26
4icd_A416 Regulation Of Isocitrate Dehydrogenase By Phosphory 5e-26
1hj6_A416 Isocitrate Dehydrogenase S113e Mutant Complexed Wit 5e-26
1cw1_A416 Crystal Structure Of Isocitrate Dehydrogenase Mutan 7e-26
4ajb_A416 3d Structure Of E. Coli Isocitrate Dehydrogenase K1 7e-26
3dms_A427 1.65a Crystal Structure Of Isocitrate Dehydrogenase 7e-26
1grp_A416 Regulatory And Catalytic Mechanisms In Escherichia 2e-25
1xac_A345 Chimera Isopropylmalate Dehydrogenase Between Bacil 3e-25
1gc8_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 4e-25
2d4v_A429 Crystal Structure Of Nad Dependent Isocitrate Dehyd 4e-25
1gro_A416 Regulatory And Catalytic Mechanisms In Escherichia 6e-25
1dr8_A344 Structure Of Modified 3-Isopropylmalate Dehydrogena 1e-24
1dpz_A349 Stucture Of Modified 3-Isopropylmalate Dehydrogenas 1e-24
1osj_A345 Structure Of 3-isopropylmalate Dehydrogenase Length 1e-24
1g2u_A345 The Structure Of The Mutant, A172v, Of 3-Isopropylm 1e-24
1dr0_A346 Structure Of Modified 3-isopropylmalate Dehydrogena 1e-24
2y3z_A359 Structure Of Isopropylmalate Dehydrogenase From The 2e-24
1osi_A345 Structure Of 3-Isopropylmalate Dehydrogenase Length 2e-24
1wal_A345 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M21 2e-24
1gc9_A345 The Crystal Structure Of Thermus Thermophilus 3-Iso 2e-24
1idm_A343 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chime 2e-24
1ipd_A345 Three-Dimensional Structure Of A Highly Thermostabl 2e-24
1vlc_A366 Crystal Structure Of 3-isopropylmalate Dehydrogenas 5e-24
1a05_A358 Crystal Structure Of The Complex Of 3-Isopropylmala 6e-24
3fmx_X364 Crystal Structure Of Tartrate Dehydrogenase From Ps 4e-23
3flk_A364 Crystal Structure Of Tartrate Dehydrogenase From Ps 2e-22
1cm7_A363 3-Isopropylmalate Dehydrogenase From Escherichia Co 3e-22
1cnz_A363 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmon 5e-22
1w0d_A337 The High Resolution Structure Of Mycobacterium Tube 5e-22
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 8e-22
3vmk_A375 3-Isopropylmalate Dehydrogenase From Shewanella Ben 9e-22
3r8w_A405 Structure Of 3-Isopropylmalate Dehydrogenase Isofor 3e-20
3vkz_A375 3-Isopropylmalate Dehydrogenase From Shewanella One 7e-20
3udu_A361 Crystal Structure Of Putative 3-Isopropylmalate Deh 3e-19
3udo_A361 Crystal Structure Of Putative Isopropylamlate Dehyd 8e-18
4iwh_A363 Crystal Structure Of A 3-isopropylmalate Dehydrogen 4e-16
2qfv_A 427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 8e-05
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 354 Back     alignment and structure 
Iteration: 1

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 178/248 (71%), Gaps = 10/248 (4%)
Query: 43  TATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTW---ESLESVR 99
           T +   GDGIGPEI++SVK++F  A VP+EWE      ++ P   + LT     +++S+ 
Sbjct: 23  TVSFIEGDGIGPEISKSVKKIFSAANVPIEWES----CDVSPIFVNGLTTIPDPAVQSIT 78
Query: 100 RNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENT 159
           +N V LKGP+ATPIGKGHRSLNLTLRK   L+ANVRP  S+ G+KT Y++V+L+ IRENT
Sbjct: 79  KNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENT 138
Query: 160 EGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDG 219
           EGEYSG+EH V  GVV+S+K+ITR AS RV  YAF YA+  GR RV  +HK+ I +  DG
Sbjct: 139 EGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADG 198
Query: 220 LFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL- 276
           LF+   +E++++YP++T E  +IDN  + +V NP+A+   V V PNLYGDI+SDL +GL 
Sbjct: 199 LFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLS 258
Query: 277 IGGLGLTP 284
            G LGLTP
Sbjct: 259 AGSLGLTP 266
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound In The Regulatory Subunits Length = 349 Back     alignment and structure
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The Regulatory Subunits Length = 354 Back     alignment and structure
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus Thermophilus Hb8 Length = 496 Back     alignment and structure
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii Length = 336 Back     alignment and structure
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In Complex With A Designed Inhibitor Length = 334 Back     alignment and structure
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate Dehydrogenase From An Extreme Thermophile, Thermus Thermophilus Length = 333 Back     alignment and structure
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate Dehydrogenase Created By Directed Evolution Length = 334 Back     alignment and structure
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Aeropyrum Pernix Length = 435 Back     alignment and structure
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From Archaeoglobus Fulgidus Studied By Crystal Structure Analysis And Engineering Of Chimers Length = 412 Back     alignment and structure
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine Length = 366 Back     alignment and structure
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Bacillus Subtilis Length = 423 Back     alignment and structure
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From Sulfolobus Tokodaii Strain7 Length = 409 Back     alignment and structure
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3- Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate Facultative Thermophile, Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans Length = 366 Back     alignment and structure
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered Nadp+--> Nad+ Specificity-Reversal Mutant Length = 416 Back     alignment and structure
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With Mg- Isocitrate Length = 416 Back     alignment and structure
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of Proteins. Length = 416 Back     alignment and structure
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue Structure Of Rate-limited Product Complex, 10 Msec Time Resolution Length = 414 Back     alignment and structure
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme Length = 416 Back     alignment and structure
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor Of Bacillus Length = 390 Back     alignment and structure
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active Site Length = 416 Back     alignment and structure
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation Involves No Long-Range Conformational Change In The Free Enzyme Length = 416 Back     alignment and structure
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled) Length = 416 Back     alignment and structure
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m Bound To Isocitrate And Mn2+ Length = 416 Back     alignment and structure
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m Mutant In Complex With Isocitrate, Magnesium(Ii) And Thionadp Length = 416 Back     alignment and structure
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From Burkholderia Pseudomallei Length = 427 Back     alignment and structure
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus Subtilis (M) And Thermus Thermophilus (T) From N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated At S82r. Low Temperature (100k) Structure. Length = 345 Back     alignment and structure
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Phe Length = 345 Back     alignment and structure
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate Dehydrogenase From Acidithiobacillus Thiooxidans Length = 429 Back     alignment and structure
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli Isocitrate Dehydrogenase: Multiple Roles For N115 Length = 416 Back     alignment and structure
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd177 Length = 344 Back     alignment and structure
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At The C- Terminus, Hd711 Length = 349 Back     alignment and structure
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate Dehydrogenase From Thermus Thermophilus Hb8 : Its Thermostability And Structure Length = 345 Back     alignment and structure
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At The C- Terminus, Hd708 Length = 346 Back     alignment and structure
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus Thermophilus - Apo Enzyme Length = 359 Back     alignment and structure
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Length = 345 Back     alignment and structure
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from Thermus Thermophilus Length = 345 Back     alignment and structure
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus 3-Isopropylmalate Dehydrogenase Mutated At 172th From Ala To Gly Length = 345 Back     alignment and structure
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera Length = 343 Back     alignment and structure
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus Thermophilus At 2.2 Angstroms Resolution Length = 345 Back     alignment and structure
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase (tm0556) From Thermotoga Maritima At 1.90 A Resolution Length = 366 Back     alignment and structure
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate Dehydrogenase From Thiobacillus Ferrooxidans With 3- Isopropylmalate Length = 358 Back     alignment and structure
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From Pseudomonas Complex With Nadh, Oxalate And Metal Ion Length = 364 Back     alignment and structure
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli Length = 363 Back     alignment and structure
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella Typhimurium Length = 363 Back     alignment and structure
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium Tuberculosis Leub (Rv2995c) Length = 337 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica Db21 Mt-2 Length = 375 Back     alignment and structure
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2 From Arabidopsis Thaliana At 2.2 Angstrom Resolution Length = 405 Back     alignment and structure
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At Atmospheric Pressure Length = 375 Back     alignment and structure
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate Dehydrogenase From Campylobacter Jejuni Length = 361 Back     alignment and structure
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase From Burkholderia Pseudomallei Length = 363 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 1e-150
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 1e-149
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-147
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 1e-138
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 1e-136
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 1e-130
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 1e-129
1tyo_A 435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-127
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 1e-125
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-123
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 1e-114
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 4e-99
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 1e-73
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 1e-57
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 2e-40
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 2e-40
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 3e-40
3u1h_A 390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 5e-40
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 7e-40
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 9e-40
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 1e-39
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 1e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
 Score =  424 bits (1093), Expect = e-150
 Identities = 132/246 (53%), Positives = 176/246 (71%), Gaps = 4/246 (1%)

Query: 42  ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRN 101
            T +   GDGIGPEI++SVK++F  A VP+EWE   V   I     + +   +++S+ +N
Sbjct: 22  YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVS-PIFVNGLTTIPDPAVQSITKN 80

Query: 102 KVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEG 161
            V LKGP+ATPIGKGHRSLNLTLRK   L+ANVRP  S+ G+KT Y++V+L+ IRENTEG
Sbjct: 81  LVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEG 140

Query: 162 EYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 221
           EYSG+EH V  GVV+S+K+ITR AS RV  YAF YA+  GR RV  +HK+ I +  DGLF
Sbjct: 141 EYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLF 200

Query: 222 LKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IG 278
           +   +E++++YP++T E  +IDN  + +V NP+A+   V V PNLYGDI+SDL +GL  G
Sbjct: 201 VNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAG 260

Query: 279 GLGLTP 284
            LGLTP
Sbjct: 261 SLGLTP 266
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Length = 405 Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A Length = 361 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Length = 390 Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Length = 375 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 359 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3u1h_A 390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1tyo_A 435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
Probab=100.00  E-value=2.6e-88  Score=638.45  Aligned_cols=243  Identities=37%  Similarity=0.603  Sum_probs=235.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCC--CCCcC
Q 023218           41 PITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI--GKGHR  118 (285)
Q Consensus        41 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~--~~~~~  118 (285)
                      .++|+||||||||||||+++++||++++++++|+++++|++++..+++.+|+|++++||++|++||||+++|.  ..+++
T Consensus         1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~   80 (333)
T 1x0l_A            1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFF   80 (333)
T ss_dssp             CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCC
T ss_pred             CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCcc
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999997  34678


Q ss_pred             chhHHHhhhcCcEEEeEEeccCCCCCCCCCCccEEEEccCCCCccccceeeEeCCeEEEEEeecHHHHHHHHHHHHHHHH
Q 023218          119 SLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAK  198 (285)
Q Consensus       119 s~~~~LRk~ldlyanvRP~~~~pg~~~~~~~vD~vIvREnteG~Y~g~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~  198 (285)
                      |++++|||+||||||+|||+++| ++++++++||+||||||||+|+|.+++ .+++++++++||++++|||+|+||+||+
T Consensus        81 s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A~  158 (333)
T 1x0l_A           81 GAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAE  158 (333)
T ss_dssp             CHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 999998999999999999999999887 6789999999999999999999999999


Q ss_pred             hCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhhhhhhccC
Q 023218          199 THGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIG  278 (285)
Q Consensus       199 ~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~G  278 (285)
                      +|+||+||++||+|||+.|+|||+++|+|++++||||+++|++||+||||||++|++||||||+|||||||||++|+++|
T Consensus       159 ~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~G  238 (333)
T 1x0l_A          159 GRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG  238 (333)
T ss_dssp             TSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred             hcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcC
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCC
Q 023218          279 GLGLTPR  285 (285)
Q Consensus       279 glGl~pS  285 (285)
                      |+||+||
T Consensus       239 slGl~ps  245 (333)
T 1x0l_A          239 GLGLAPS  245 (333)
T ss_dssp             CSTTCEE
T ss_pred             Cccccee
Confidence            9999997
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 3e-65
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 9e-61
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 6e-60
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 9e-58
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 4e-57
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-56
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 9e-55
d1w0da_337 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-51
d1lwda_ 413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 4e-51
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-50
d1t0la_ 414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-47
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: Isocitrate dehydrogenase, ICDH
species: Bacillus subtilis [TaxId: 1423]

 Score =  208 bits (529), Expect = 3e-65
 Identities = 87/308 (28%), Positives = 137/308 (44%), Gaps = 66/308 (21%)

Query: 43  TATLFPGDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESL 95
                 GDG GP+I  +  +V   A       E  + W+E Y G +   +T  +L  E+L
Sbjct: 21  IIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETL 80

Query: 96  ESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNL 152
           + +R   + +KGP+ TP+G G RSLN+ LR+EL+L+  +RP     G  +   R +D ++
Sbjct: 81  DVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDM 140

Query: 153 ITIRENTEGEYSGLEHQVVRGVVESL-----------------------KIITRQASLRV 189
           +  RENTE  Y+G+E+      V+ L                       K ++ + + R+
Sbjct: 141 VIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRL 200

Query: 190 AEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREV--------------------- 228
              A  YA  HGR+ V+ +HK NIM+ T+G F     E+                     
Sbjct: 201 VRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEE 260

Query: 229 ------------AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGL 276
                       AE   +I  ++ + D     ++  P  FDV+   NL GD ISD  A  
Sbjct: 261 QGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQ 320

Query: 277 IGGLGLTP 284
           +GG+G+ P
Sbjct: 321 VGGIGIAP 328
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Length = 337 Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1lwda_ 413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_ 414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 81.97
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.9e-81  Score=588.70  Aligned_cols=243  Identities=30%  Similarity=0.498  Sum_probs=231.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHHHHHHcCCCeEEEEEeccceecCCCCCCcChhhHHHhhhcCeEEECCccCCCCC---CcC
Q 023218           42 ITATLFPGDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK---GHR  118 (285)
Q Consensus        42 ~~IavipGDGIGpEV~~aa~~VL~a~~~~ie~~~~~~G~~~~~~~~~~lp~e~~~~ik~~daiL~Gav~~p~~~---~~~  118 (285)
                      +||+||||||||||||+++++||++++.+++|+++++|++++..+++.+|++++++|+++|++|+||+++|..+   ..+
T Consensus         2 ~kI~vlpGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~et~~~~~~~daiL~G~vg~p~~~~~~~~~   81 (337)
T d1w0da_           2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER   81 (337)
T ss_dssp             CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHHHHhhCCcEEEEEeeehhhHHhhCCcCcHHHHHHHHhCCeEEECCCCCCCCCCccccc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999753   345


Q ss_pred             chhHHHhhhcCcEEEeEEeccCCCCCCCC---CCccEEEEccCCCCccccceeeEe----CCeEEEEEeecHHHHHHHHH
Q 023218          119 SLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVV----RGVVESLKIITRQASLRVAE  191 (285)
Q Consensus       119 s~~~~LRk~ldlyanvRP~~~~pg~~~~~---~~vD~vIvREnteG~Y~g~~~~~~----~~~a~~~~~~Tr~~~eRIar  191 (285)
                      ++++.|||+||||+|+||||++||++++.   +++|+|||||||||+|+|.+++..    ++++++++++|+.+++||+|
T Consensus        82 ~~~l~LR~~ldlyaniRP~r~~~g~~~~~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~~  161 (337)
T d1w0da_          82 GLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVA  161 (337)
T ss_dssp             HTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHH
T ss_pred             chHHHHHHHhcccceeeeEeecCccccccccCCCcCeeeHhhhhcCccccCCCeeecCCCceEEEEEEeecchheeehhh
Confidence            78999999999999999999999998653   579999999999999999998764    35899999999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHHhCCCccceeeeHHHHHHHHHhCCCCccEEEeCCchhhHHhh
Q 023218          192 YAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISD  271 (285)
Q Consensus       192 ~AFe~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSD  271 (285)
                      +||++|++| +|+||++||+|||+.|+++|++++++++++||+|++++++||+++||||++|++||||||+|||||||||
T Consensus       162 ~Af~~A~~~-r~~Vt~v~KaNv~~~t~g~f~~~~~~va~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD  240 (337)
T d1w0da_         162 DAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD  240 (337)
T ss_dssp             HHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred             hhhhHhhcc-CceEEEEECcchhhhhHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHhcccccceeeccHHHHHHHHH
Confidence            999999987 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCcccCCC
Q 023218          272 LCAGLIGGLGLTPR  285 (285)
Q Consensus       272 laa~l~GglGl~pS  285 (285)
                      ++|+++||+||+||
T Consensus       241 laa~l~GglGl~ps  254 (337)
T d1w0da_         241 LAAAVCGGIGLAAS  254 (337)
T ss_dssp             HHHHHTTCGGGCEE
T ss_pred             HHHHhcCCcccCCc
Confidence            99999999999997
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure