Citrus Sinensis ID: 023223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSAF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEcccccccEEEEcccccccccccEEEEEEEEccccHHHHHHccccccEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHccccEEcccEEEEEEcccccEEEEEEEcccccccccccEccccEEEEEEccccccEEEEEcccccccccccEEEEEEEEcccccHHHHHHcccccEEEEEccccEEEEEcccccccccccEEEEEccccccHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
malalspspslphahvsqtfppmsilrripllhlkPQRRRLATLAAAAVRqdttvwtptplaeispaaeslfhvsidisdapdiasshtraGQYLQLRVvdvgkptflaiasppsfasasGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGrgfavdriqppdeyptvLIFAtgsgispiRSLIesgfsskersdVRLYYGARNLKRMAYQDKFKewessgvkivpvlsqpdgnwsgetGYVQAAFSRAKkifnpqgtgvvlcgQKQMAEVCYCFCLEFSAF
Flexible Loop (DISEMBL)
malalspspslphahvsqtfppMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLiesgfsskersdVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSAF
Low Complexity Region (SEG)
MALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQrrrlatlaaaavrQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIasppsfasasgafEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSAF
Disordered region (IsUnstruct)
**********************MSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHV******************QYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF*****SDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF***
Disordered Region (DISOPRED)
********************************H*KP***RLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSAF
Disordered Region (DISEMBL)
*************AHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSAF
Disordered Region (DISPRO)
*****SPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
P43394	317	Fruit protein pKIWI502 OS	N/A	no	0.943	0.848	0.478	2e-70
Q8U2E4	292	Sulfhydrogenase 1 subunit	yes	no	0.631	0.616	0.282	3e-10
Q6BQ54	299	NADH-cytochrome b5 reduct	yes	no	0.529	0.505	0.260	3e-08
Q7WTJ2	353	Phenol hydroxylase P5 pro	yes	no	0.529	0.427	0.278	4e-08
Q66DP5	329	CDP-6-deoxy-L-threo-D-gly	yes	no	0.607	0.525	0.267	7e-08
P19734	353	Phenol hydroxylase P5 pro	N/A	no	0.656	0.529	0.295	8e-08
P68641	329	CDP-6-deoxy-L-threo-D-gly	yes	no	0.607	0.525	0.267	9e-08
A5DQE4	294	NADH-cytochrome b5 reduct	N/A	no	0.529	0.513	0.242	1e-07
P0AEN1	233	NAD(P)H-flavin reductase	N/A	no	0.694	0.849	0.240	2e-07
P0AEN2	233	NAD(P)H-flavin reductase	yes	no	0.694	0.849	0.240	2e-07

>sp|P43394|K502_ACTDE Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502 PE=2 SV=1

 Score =  265 bits (678), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/284 (47%), Positives = 190/284 (66%), Gaps = 15/284 (5%)

Query: 4   ALSPSPSLP-HAHVSQTFP---PMSILRRIPLLHLKPQRRRL----ATLAAAAVRQDTTV 55
           +LS  PSL  H+ +S   P   P++ LR  P L      R L    A L   A+RQDT +
Sbjct: 14  SLSRHPSLTLHSSLSHAPPHHRPVAFLRH-PTLRYHHHGRLLSVASAILQDTAIRQDTYI 72

Query: 56  WTPTPLAEISPAA-ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLA 109
           WTP P++ + PAA ESLF V +D+S +PD+  +    GQY+Q+R+ +       +P +  
Sbjct: 73  WTPVPISRVLPAAAESLFKVIVDLSRSPDLVYNFVSPGQYVQIRIPEAIVNPPPRPAYFY 132

Query: 110 IASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169
           IASPPS    +  FEFL++SV G+T+EVLC LK+GDVV+++Q++GRGF +++I PP++YP
Sbjct: 133 IASPPSLVKKNLEFEFLIRSVPGTTSEVLCSLKEGDVVDLTQIIGRGFDIEQILPPEDYP 192

Query: 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVP 229
           TVLI  TG G+S  RS IE GF + +RSDVRLYYGA NL+ M YQ++FK+WE+SGV+++P
Sbjct: 193 TVLISVTGYGMSAGRSFIEEGFGANKRSDVRLYYGAENLETMGYQERFKDWEASGVRVIP 252

Query: 230 VLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           VLS+P  NW+G  GYVQ  + + K I +P+ TG VL G   M E
Sbjct: 253 VLSRPPPNWNGAVGYVQDVYLKDKPIADPRTTGAVLIGNPNMVE 296

Actinidia deliciosa (taxid: 3627)

>sp|Q8U2E4|HYD1G_PYRFU Sulfhydrogenase 1 subunit gamma OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=hydG PE=1 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 18/198 (9%)

Query: 80  DAPDIASSHT-RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138
           + P++A   T + GQ++QL +  VG+      +SP       G FE  ++  AG    V+
Sbjct: 40  EDPELAEKWTFKPGQFVQLTIPGVGEVPISICSSP----MRKGFFELCIRK-AGRVTTVV 94

Query: 139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER-S 197
             LK GD V +    G GF VD  +  D    +L+ A G G +P+RS+      ++ +  
Sbjct: 95  HRLKPGDTVLVRGPYGNGFPVDEWEGMD----LLLIAAGLGTAPLRSVFLYAMDNRWKYG 150

Query: 198 DVRLYYGARNLKRMAYQDKFKEW----ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAK 253
           ++     AR  K + +  + +      E+  VKI+  +++ D NW G  G  Q     A 
Sbjct: 151 NITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTR-DPNWPGLKGRPQQFIVEAN 209

Query: 254 KIFNPQGTGVVLCGQKQM 271
              NP+ T V +CG  +M
Sbjct: 210 T--NPKNTAVAICGPPRM 225

Part of a bifunctional enzyme complex that functions as an NADPH-dependent hydrogen-evolving hydrogenase with sulfur reducing activity. May play a role in hydrogen cycling during fermentative growth. Activity not exhibited with NAD. The beta and gamma subunits form the sulfur reducing component that catalyzes the cytoplasmic production of hydrogen sulfide in the presence of elemental sulfur. Not active in the presence of sodium sulfate, sodium sulfite, sodium thiosulfate or cysteine.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 9

EC: 7

EC: .

EC: 1

EC: .

EC: 3

>sp|Q6BQ54|MCR1_DEBHA NADH-cytochrome b5 reductase 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MCR1 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 112 SPPSFASASGAFEFLVKSV-AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           +P S     G+ EF++K    G  +  +  LK  D +       +G  V     P++Y +
Sbjct: 106 TPISDVDGKGSIEFVIKKYDGGKMSSHIHDLKPNDTLAF-----KGPVVKWKWEPNQYKS 160

Query: 171 VLIFATGSGISPIRSLI-ESGFSSKERSDVRLYYGARNLKRMAYQ---DKFKEWESSGVK 226
           + +   G+GI+P+  L+ E   + ++++ V L+YG    K +  +   D   E     V 
Sbjct: 161 IALIGGGTGITPLYQLMHEITKNPEDKTKVNLFYGNLTEKDILIKKELDTIAEKHKDQVN 220

Query: 227 IVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG 267
           +V  L +   NW+GETGY+   F ++K     +   V +CG
Sbjct: 221 VVYFLDKAPENWNGETGYISKEFLQSKLPGPGKDNKVFVCG 261

May mediate the reduction of outer membrane cytochrome b5.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|Q7WTJ2|DMPP_ACICP Phenol hydroxylase P5 protein OS=Acinetobacter calcoaceticus (strain PHEA-2) GN=mphP PE=1 SV=3

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG--STAEVLCGLKKGDVV 147
           +AGQY+ ++  ++      +IA+ PS     G  E  ++ V G  +T  V   L  GD +
Sbjct: 133 QAGQYINVQFPNIEGTRAFSIANSPS---EVGIVELHIRKVEGGAATTYVHEQLATGDQL 189

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
           +IS   G+ F    ++  D+   + I A GSG+S  +S+I     S +   + L+ GAR+
Sbjct: 190 DISGPYGQFF----VRKSDDQNAIFI-AGGSGLSSPQSMILDLLESGDSRTIYLFQGARD 244

Query: 208 LKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGYVQAA 248
           L  +  ++ F++   +    + +P L+  +P+  W+G TG+V  A
Sbjct: 245 LAELYNRELFEQLVKDYPNFRYIPALNAPKPEDQWTGFTGFVHEA 289

Probable electron transfer from NADPH, via FAD and the 2Fe-2S center, to the oxygenase activity site of the enzyme.

Acinetobacter calcoaceticus (strain PHEA-2) (taxid: 871585)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 7

>sp|Q66DP5|ASCD_YERPS CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ascD PE=1 SV=3

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 25/198 (12%)

Query: 58  PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFA 117
           P  L  I    E +  +S+ +   P  A     AGQY+ L +   G+    +IA+ P   
Sbjct: 102 PCKLDSIEFVGEDIAILSLRL---PPTAKIQYLAGQYIDLIIN--GQRRSYSIANAPG-- 154

Query: 118 SASGAFEFLVKSVAGSTAE--VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA 175
             +G  E  V+ V        +   LK   ++ I    G  F  +     D  P V + A
Sbjct: 155 -GNGNIELHVRKVVNGVFSNIIFNELKLQQLLRIEGPQGTFFVRE-----DNLPIVFL-A 207

Query: 176 TGSGISPIRSLIESGFSSKERSDVRLYYG---ARNLKRMAYQDKFKEW--ESSGVKIVPV 230
            G+G +P++S++E+  +  ++  V +Y+G     N     Y D   EW  +   +  VPV
Sbjct: 208 GGTGFAPVKSMVEALINKNDQRQVHIYWGMPAGHNF----YSDIANEWAIKHPNIHYVPV 263

Query: 231 LSQPDGNWSGETGYVQAA 248
           +S  D  W+G TG+V  A
Sbjct: 264 VSGDDSTWTGATGFVHQA 281

Participates in the conversion of CDP-6-deoxy-D-glycero-L-threo-4-hexulose to 3,6-dideoxy-D-glycero-D-glycero-4-hexulose together with CDP-6-deoxy-D-glycero-L-threo-4-hexulose-3-dehydrase (E1) in two consecutive steps. The detailed mechanism of E3 is not yet resolved.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P19734|DMPP_PSEUF Phenol hydroxylase P5 protein OS=Pseudomonas sp. (strain CF600) GN=dmpP PE=1 SV=3

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 99/220 (45%), Gaps = 33/220 (15%)

Query: 59  TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFAS 118
           + L ++SP  + L H+ +D            +AGQY+ L +  +      ++A+PPS   
Sbjct: 110 SALVDLSPTIKGL-HIKLD-------RPMPFQAGQYVNLALPGIDGTRAFSLANPPS--- 158

Query: 119 ASGAFEFLVKSVAG--STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFAT 176
            +   E  V+ V G  +T  +   LK GD VE+S   G+ F  D      +   ++  A 
Sbjct: 159 RNDEVELHVRLVEGGAATGFIHKQLKVGDAVELSGPYGQFFVRDS-----QAGDLIFIAG 213

Query: 177 GSGISPIRSLIESGFSSKERSDVR---LYYGARNLKRMAYQDKFKEWESS--GVKIVPVL 231
           GSG+S  +S+I       ER D R   L+ GARN   +   + F+E  +       VP L
Sbjct: 214 GSGLSSPQSMI---LDLLERGDTRRITLFQGARNRAELYNCELFEELAARHPNFSYVPAL 270

Query: 232 SQ--PDGNWSGETGYVQAAFSRAKKIFNPQ--GTGVVLCG 267
           +Q   D  W G  G+V  A   AK  F+ +  G    LCG
Sbjct: 271 NQANDDPEWQGFKGFVHDA---AKAHFDGRFGGQKAYLCG 307

Probable electron transfer from NADPH, via FAD and the 2Fe-2S center, to the oxygenase activity site of the enzyme.

Pseudomonas sp. (strain CF600) (taxid: 79676)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 7

>sp|P68641|ASCD_YERPE CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase OS=Yersinia pestis GN=ascD PE=3 SV=2

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 25/198 (12%)

Query: 58  PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFA 117
           P  L  I    E +  +S+ +   P  A     AGQY+ L +   G+    +IA+ P   
Sbjct: 102 PCKLDSIEFIGEDIAILSLRL---PPTAKIQYLAGQYIDLIIN--GQRRSYSIANAPG-- 154

Query: 118 SASGAFEFLVKSVAGSTAE--VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA 175
             +G  E  V+ V        +   LK   ++ I    G  F  +     D  P V + A
Sbjct: 155 -GNGNIELHVRKVVNGVFSNIIFNELKLQQLLRIEGPQGTFFVRE-----DNLPIVFL-A 207

Query: 176 TGSGISPIRSLIESGFSSKERSDVRLYYG---ARNLKRMAYQDKFKEW--ESSGVKIVPV 230
            G+G +P++S++E+  +  ++  V +Y+G     N     Y D   EW  +   +  VPV
Sbjct: 208 GGTGFAPVKSMVEALINKNDQRQVHIYWGMPAGHNF----YSDIANEWAIKHPNIHYVPV 263

Query: 231 LSQPDGNWSGETGYVQAA 248
           +S  D  W+G TG+V  A
Sbjct: 264 VSGDDSTWTGATGFVHQA 281

Participates in the conversion of CDP-6-deoxy-D-glycero-L-threo-4-hexulose to 3,6-dideoxy-D-glycero-D-glycero-4-hexulose together with CDP-6-deoxy-D-glycero-L-threo-4-hexulose-3-dehydrase (E1) in two consecutive steps. The detailed mechanism of E3 is not yet resolved.

Yersinia pestis (taxid: 632)

EC: 1

EC: .

EC: 1

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A5DQE4|MCR1_PICGU NADH-cytochrome b5 reductase 2 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MCR1 PE=3 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 112 SPPSFASASGAFEFLVKSV-AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           +P S     G  +F++K    G  +    GLK+GD V       +G  V     P+++ +
Sbjct: 101 TPVSDVDQKGTIDFVIKKYDGGKMSTHFHGLKEGDTVSF-----KGPIVKWKWEPNQFQS 155

Query: 171 VLIFATGSGISPIRSLI-ESGFSSKERSDVRLYYGARNLKRMAYQ---DKFKEWESSGVK 226
           + +   G+GI+P+  L+ E   + ++++ V+L+YG    + +  +   D   E     V 
Sbjct: 156 IALIGGGTGITPLYQLLHEITKNPEDKTKVKLFYGNLTEEDILIKKELDDIAEKHKDQVS 215

Query: 227 IVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG 267
           I   + +   NW GETG++   F ++      + + V +CG
Sbjct: 216 ITYFVDKASANWKGETGHIDKEFLQSNLPGPSKDSKVFVCG 256

May mediate the reduction of outer membrane cytochrome b5.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 2

>sp|P0AEN1|FRE_ECOLI NAD(P)H-flavin reductase OS=Escherichia coli (strain K12) GN=fre PE=1 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 64  ISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAF 123
           +    ++++ V I     PD A S  RAGQYL + + +  K        P S AS     
Sbjct: 11  VEAITDTVYRVRI----VPDAAFSF-RAGQYLMVVMDERDK-------RPFSMASTPDEK 58

Query: 124 EFLVKSVAGSTAEVLCGLKKGDVVEISQVM-----GRGFAVDRIQPPDEYPTVLIFATGS 178
            F+   +  S   +        +++  Q++     G  +    ++  +E P +LI A G+
Sbjct: 59  GFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAW----LRDDEERPMILI-AGGT 113

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK--EWESSGVKIVPVLSQPDG 236
           G S  RS++ +  +     D+ +Y+G R  + +    + +    +  G+++VPV+ QP+ 
Sbjct: 114 GFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEA 173

Query: 237 NWSGETGYVQAAFSRAKKIFNPQGT----GVVLCGQKQMAEVCY-CFCLEFSA 284
            W G TG V  A      +    GT     + + G+ +MA++    FC E +A
Sbjct: 174 GWRGRTGTVLTA------VLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNA 220

Catalyzes the reduction of soluble flavins by reduced pyridine nucleotides. Seems to reduce the complexed Fe(3+) iron of siderophores to Fe(2+), thus releasing it from the chelator.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|P0AEN2|FRE_ECOL6 NAD(P)H-flavin reductase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fre PE=3 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 35/233 (15%)

Query: 64  ISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAF 123
           +    ++++ V I     PD A S  RAGQYL + + +  K        P S AS     
Sbjct: 11  VEAITDTVYRVRI----VPDAAFSF-RAGQYLMVVMDERDK-------RPFSMASTPDEK 58

Query: 124 EFLVKSVAGSTAEVLCGLKKGDVVEISQVM-----GRGFAVDRIQPPDEYPTVLIFATGS 178
            F+   +  S   +        +++  Q++     G  +    ++  +E P +LI A G+
Sbjct: 59  GFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAW----LRDDEERPMILI-AGGT 113

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK--EWESSGVKIVPVLSQPDG 236
           G S  RS++ +  +     D+ +Y+G R  + +    + +    +  G+++VPV+ QP+ 
Sbjct: 114 GFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEA 173

Query: 237 NWSGETGYVQAAFSRAKKIFNPQGT----GVVLCGQKQMAEVCY-CFCLEFSA 284
            W G TG V  A      +    GT     + + G+ +MA++    FC E +A
Sbjct: 174 GWRGRTGTVLTA------VLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNA 220

Catalyzes the reduction of soluble flavins by reduced pyridine nucleotides. Seems to reduces the complexed Fe(3+) iron of siderophores to Fe(2+), thus releasing it from the chelator.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224111562	255	predicted protein [Populus trichocarpa]	0.824	0.921	0.809	1e-110
225424144	290	PREDICTED: fruit protein pKIWI502 [Vitis	0.915	0.9	0.713	1e-108
147838607	290	hypothetical protein VITISV_018719 [Viti	0.915	0.9	0.709	1e-107
356536242	295	PREDICTED: fruit protein pKIWI502-like [	0.943	0.911	0.716	1e-107
297849940	295	oxidoreductase NAD-binding domain-contai	0.933	0.901	0.717	1e-107
18394201	295	FAD/NAD(P)-binding oxidoreductase [Arabi	0.933	0.901	0.706	1e-106
357444597	385	Fruit protein pKIWI502 [Medicago truncat	0.936	0.693	0.705	1e-106
224099439	255	predicted protein [Populus trichocarpa]	0.821	0.917	0.787	1e-105
255582909	292	Fruit protein PKIWI502, putative [Ricinu	0.919	0.897	0.691	1e-102
356575613	271	PREDICTED: fruit protein pKIWI502-like [	0.880	0.926	0.729	1e-101

>gi|224111562|ref|XP_002315901.1| predicted protein [Populus trichocarpa] gi|222864941|gb|EEF02072.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/236 (80%), Positives = 217/236 (91%), Gaps = 1/236 (0%)

Query: 38  RRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQL 97
           RRRLAT+AAA VRQDTT+WT  PL+EI PAAESLFHVSID+SD PD+A+SHTRAGQYLQL
Sbjct: 1   RRRLATVAAA-VRQDTTIWTQAPLSEIEPAAESLFHVSIDVSDYPDLAASHTRAGQYLQL 59

Query: 98  RVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGF 157
           RV DV KP+FLAIASPPS+A+  GAFEFLVKSVAGSTAE+LCGLKKGDVVE+SQ  GRGF
Sbjct: 60  RVPDVEKPSFLAIASPPSYAAEKGAFEFLVKSVAGSTAELLCGLKKGDVVELSQATGRGF 119

Query: 158 AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217
            +D+I+P ++YPTVLIFATGSGISPIRSLIESGFS+ +RSDVRLYYGARN+KRMAYQD+F
Sbjct: 120 EIDQIEPAEKYPTVLIFATGSGISPIRSLIESGFSADKRSDVRLYYGARNIKRMAYQDRF 179

Query: 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           K+WESSGVKIVPVLSQPDG W+GETGYVQAAF+ AK+I++P GTG VLCGQKQM E
Sbjct: 180 KDWESSGVKIVPVLSQPDGRWTGETGYVQAAFAMAKQIYSPTGTGAVLCGQKQMTE 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424144|ref|XP_002283966.1| PREDICTED: fruit protein pKIWI502 [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/272 (71%), Positives = 229/272 (84%), Gaps = 11/272 (4%)

Query: 2   ALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPL 61
           +++L+P    PHAH      PMSI+R     HLK  RRR  ++AAA +RQDTTVWTP PL
Sbjct: 10  SVSLTPHLRFPHAHRKY---PMSIIR-----HLK--RRRFTSIAAA-LRQDTTVWTPAPL 58

Query: 62  AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASG 121
           + + PAA+SLFHV+ID+SD+PDI SSH+ AGQYLQLR+ D  KP+FLAIASPPS A+A G
Sbjct: 59  SSVHPAADSLFHVTIDVSDSPDILSSHSSAGQYLQLRLPDFAKPSFLAIASPPSLAAARG 118

Query: 122 AFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
            FEFLVKSV GSTAE+LCGLKKGDVVE++  MGRGF +DRI PP++Y TVLIFATGSGIS
Sbjct: 119 EFEFLVKSVPGSTAELLCGLKKGDVVELTPAMGRGFDIDRISPPEDYHTVLIFATGSGIS 178

Query: 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGE 241
           PIRSLIESGFS+ +RSDVRLYYGARNL+RMAYQD+FK+WES+GVKIVPVLSQPD +W+GE
Sbjct: 179 PIRSLIESGFSADKRSDVRLYYGARNLQRMAYQDRFKDWESTGVKIVPVLSQPDNSWTGE 238

Query: 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           TGYVQAAF+RAKKI++PQ TG VLCGQ QM E
Sbjct: 239 TGYVQAAFARAKKIYSPQSTGAVLCGQGQMTE 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838607|emb|CAN69513.1| hypothetical protein VITISV_018719 [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/272 (70%), Positives = 228/272 (83%), Gaps = 11/272 (4%)

Query: 2   ALALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPL 61
           +++L+P    PHAH      PMSI+R     HLK  RRR  ++AAA +RQDTTVWTP PL
Sbjct: 10  SVSLTPHLRFPHAHRKY---PMSIIR-----HLK--RRRFTSIAAA-LRQDTTVWTPAPL 58

Query: 62  AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASG 121
           + + PAA+SLFHV+ID+SD+PDI SSH+ AGQYLQLR+ D  KP+FLAIASP S A+A G
Sbjct: 59  SSVHPAADSLFHVTIDVSDSPDILSSHSSAGQYLQLRLPDFAKPSFLAIASPXSLAAARG 118

Query: 122 AFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
            FEFLVKSV GSTAE+LCGLKKGDVVE++  MGRGF +DRI PP++Y TVLIFATGSGIS
Sbjct: 119 EFEFLVKSVPGSTAELLCGLKKGDVVELTPAMGRGFDIDRISPPEDYHTVLIFATGSGIS 178

Query: 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGE 241
           PIRSLIESGFS+ +RSDVRLYYGARNL+RMAYQD+FK+WES+GVKIVPVLSQPD +W+GE
Sbjct: 179 PIRSLIESGFSADKRSDVRLYYGARNLQRMAYQDRFKDWESTGVKIVPVLSQPDNSWTGE 238

Query: 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           TGYVQAAF+RAKKI++PQ TG VLCGQ QM E
Sbjct: 239 TGYVQAAFARAKKIYSPQSTGAVLCGQGQMTE 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536242|ref|XP_003536648.1| PREDICTED: fruit protein pKIWI502-like [Glycine max]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/279 (71%), Positives = 230/279 (82%), Gaps = 10/279 (3%)

Query: 1   MALALSPSPSL------PHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVRQDTT 54
           M+L  SP PSL      PH H S   P MSILRR+PL     +RRRLAT++AA +RQDT 
Sbjct: 1   MSLLFSPPPSLTGLSLHPHVHFS---PSMSILRRLPLNLRTTRRRRLATVSAA-LRQDTA 56

Query: 55  VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPP 114
           VWTP PL+E+  AAESLFH++ID+SDAPD+A+SHT AGQYLQLRV D  KP+FLAIASPP
Sbjct: 57  VWTPAPLSEVEHAAESLFHIAIDVSDAPDLAASHTLAGQYLQLRVPDAPKPSFLAIASPP 116

Query: 115 SFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF 174
             A+A G FEFLVKSVAGSTAE LC LK+GDVVE+SQVMG GF +DRI PP+ + TVL+F
Sbjct: 117 KLAAARGVFEFLVKSVAGSTAEALCALKRGDVVELSQVMGNGFDIDRIHPPENFGTVLVF 176

Query: 175 ATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQP 234
           ATGSGISPIRSLIESGF + +RSDVRLYYGARNL+RMAYQD+FK+WESSGVKIVPVLSQP
Sbjct: 177 ATGSGISPIRSLIESGFDAGKRSDVRLYYGARNLQRMAYQDRFKDWESSGVKIVPVLSQP 236

Query: 235 DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           D NW+GE+GYVQAAFSR K+I +P  TG VLCGQKQM E
Sbjct: 237 DENWTGESGYVQAAFSREKQISDPLTTGAVLCGQKQMTE 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849940|ref|XP_002892851.1| oxidoreductase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338693|gb|EFH69110.1| oxidoreductase NAD-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/269 (71%), Positives = 225/269 (83%), Gaps = 3/269 (1%)

Query: 8   SPSLPHAHVSQTFPPMSILRRIPL---LHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEI 64
           +PS+ HAH S +  PM ILRR+PL   L L    R  + ++AAAVRQD ++WTP PL+ I
Sbjct: 7   APSVTHAHFSHSLSPMFILRRLPLTRHLRLSRNNRVASVVSAAAVRQDASLWTPAPLSLI 66

Query: 65  SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFE 124
             AAESLFH+SIDIS+APD+ +S+TR GQYLQLRV DV KP+F+AIASPPS A++ GAFE
Sbjct: 67  ESAAESLFHISIDISNAPDLVASYTRPGQYLQLRVPDVEKPSFMAIASPPSLAASRGAFE 126

Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
           FLVKS+AGSTAE+LCGLKKG+ VE+S VMG GF +D I PP++YPTVLIFATGSGISPIR
Sbjct: 127 FLVKSIAGSTAEILCGLKKGETVELSPVMGNGFNIDLIDPPEKYPTVLIFATGSGISPIR 186

Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGY 244
           SLIESGF +  RSDVRLYYGARNLKRMAYQDKFKEWESSGVK+VPVLSQPD  W GETGY
Sbjct: 187 SLIESGFGADRRSDVRLYYGARNLKRMAYQDKFKEWESSGVKVVPVLSQPDDGWKGETGY 246

Query: 245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           VQAAF+RAK++  P+ TG VLCGQKQMAE
Sbjct: 247 VQAAFARAKQLAAPKATGAVLCGQKQMAE 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394201|ref|NP_563963.1| FAD/NAD(P)-binding oxidoreductase [Arabidopsis thaliana] gi|5103813|gb|AAD39643.1|AC007591_8 Contains a PF|00175 Oxidoreductase FAD/NADH-binding domain. ESTs gb|H76345 and gb|AA651465 come from this gene [Arabidopsis thaliana] gi|12744999|gb|AAK06879.1|AF344328_1 unknown protein [Arabidopsis thaliana] gi|15451092|gb|AAK96817.1| Unknown protein [Arabidopsis thaliana] gi|18377448|gb|AAL66890.1| unknown protein [Arabidopsis thaliana] gi|332191150|gb|AEE29271.1| FAD/NAD(P)-binding oxidoreductase [Arabidopsis thaliana]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/269 (70%), Positives = 223/269 (82%), Gaps = 3/269 (1%)

Query: 8   SPSLPHAHVSQTFPPMSILRRIPL---LHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEI 64
           +PS+ HAH S +  PM ILR +PL   L L    R  + ++AAAVRQD ++WTP PL+ I
Sbjct: 7   APSVTHAHFSHSLSPMFILRHLPLTRHLRLSRNNRVASVVSAAAVRQDASLWTPAPLSLI 66

Query: 65  SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFE 124
             AAESLFH+SIDIS+APD+ +S+TR GQYLQ+RV DV KP+F+AIASPPS AS+ GAFE
Sbjct: 67  ESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPSFMAIASPPSLASSRGAFE 126

Query: 125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
           FLVKS+AGSTAE+LCGLKKG+ VE+S VMG GF +D I PP+EYPTVLIFATGSGISPIR
Sbjct: 127 FLVKSIAGSTAEILCGLKKGETVELSSVMGNGFNIDLIDPPEEYPTVLIFATGSGISPIR 186

Query: 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGY 244
           SLIESGF +  RSDVRLYYGARNL RMAYQ+KFKEWES+GVK+VPVLSQPD  W GETGY
Sbjct: 187 SLIESGFGADRRSDVRLYYGARNLNRMAYQEKFKEWESAGVKVVPVLSQPDDGWKGETGY 246

Query: 245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           VQAAF+RAK++  P+ TG VLCGQKQMAE
Sbjct: 247 VQAAFARAKQLSAPKATGAVLCGQKQMAE 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444597|ref|XP_003592576.1| Fruit protein pKIWI502 [Medicago truncatula] gi|355481624|gb|AES62827.1| Fruit protein pKIWI502 [Medicago truncatula]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/275 (70%), Positives = 226/275 (82%), Gaps = 8/275 (2%)

Query: 3   LALSPSPSLPHAHVSQTFPPMSILRRIPLLHLKPQ----RRRLATLAAAAVRQDTTVWTP 58
           L+L+P     HAH S T  PMSILRR    +L P     R RLATL+AA VRQDTTVWTP
Sbjct: 95  LSLTPPQIHSHAHFSPTPFPMSILRR---FNLNPTNHRLRHRLATLSAA-VRQDTTVWTP 150

Query: 59  TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFAS 118
            PL+EI PAAESLFHVSID+SD+PD+A+SHTRAGQYLQL+V D  KP+FLAIASPP  A 
Sbjct: 151 APLSEIEPAAESLFHVSIDVSDSPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAI 210

Query: 119 ASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178
             G FEFLVKSV GSTAE LCGLKKGDVVE+S VMG GF + RI PP+++ TVL+FATGS
Sbjct: 211 KLGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGS 270

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNW 238
           GISPIRSLIESGF + +RSDVRL+YGARNLKRMAYQ++F++WESSGVKIVPVLSQ D +W
Sbjct: 271 GISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFEDWESSGVKIVPVLSQADDSW 330

Query: 239 SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           +GE+G+VQAA++RAK++ NP  TG VLCGQKQM E
Sbjct: 331 TGESGFVQAAYTRAKELSNPSSTGAVLCGQKQMTE 365

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099439|ref|XP_002311484.1| predicted protein [Populus trichocarpa] gi|222851304|gb|EEE88851.1| predicted protein [Populus trichocarpa]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/235 (78%), Positives = 215/235 (91%), Gaps = 1/235 (0%)

Query: 39  RRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLR 98
           RRLAT+AAA V QDTTVWT  PL+ I PAAESLFHV ID+ D+PD+A+SHTRAGQYLQLR
Sbjct: 2   RRLATVAAA-VWQDTTVWTQAPLSGIEPAAESLFHVRIDVLDSPDLAASHTRAGQYLQLR 60

Query: 99  VVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFA 158
           V DV KP+FLAIASPPS A++ GAF+FLVKSVAGSTAE+LCGLK+GDVVE+SQ MGRGF 
Sbjct: 61  VPDVEKPSFLAIASPPSDAASKGAFDFLVKSVAGSTAELLCGLKRGDVVELSQAMGRGFD 120

Query: 159 VDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218
           +++I+P ++YPTVLIFATGSGISPIRSLIESGF++ +RSDVRLYYGARN+KRMAYQD+FK
Sbjct: 121 IEQIEPAEKYPTVLIFATGSGISPIRSLIESGFNADKRSDVRLYYGARNVKRMAYQDRFK 180

Query: 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           +WESSGVKIVPVLSQPD NW+GE+ YVQAAFSRAK+I++P GTGVVLCGQKQM E
Sbjct: 181 DWESSGVKIVPVLSQPDDNWTGESNYVQAAFSRAKQIYSPTGTGVVLCGQKQMTE 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582909|ref|XP_002532226.1| Fruit protein PKIWI502, putative [Ricinus communis] gi|223528083|gb|EEF30157.1| Fruit protein PKIWI502, putative [Ricinus communis]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/272 (69%), Positives = 218/272 (80%), Gaps = 10/272 (3%)

Query: 11  LPHAHVSQTFPPMSILRRIPLLHLKPQRRRLATLAAAAVR--QDTTVWTPTPLAEISPAA 68
           +PHAH S    PMSILRR     L P+   +  +A+ A    QDTT+W+  PL+ I PAA
Sbjct: 16  IPHAHNSH---PMSILRR-----LTPRNLNIRRVASVAAAARQDTTLWSHAPLSLIEPAA 67

Query: 69  ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVK 128
           ESLFH++ID+SD+PD+ SSH+RAGQYLQLR+ DV KP+FLAIASPPS+A+  GAFEFLVK
Sbjct: 68  ESLFHITIDVSDSPDVVSSHSRAGQYLQLRIPDVEKPSFLAIASPPSYAAKKGAFEFLVK 127

Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE 188
           SV  STAE+LC LKKGDVVE++Q MG GF +DRI PP++Y TVLIFATGSGISPIRSLIE
Sbjct: 128 SVPASTAELLCRLKKGDVVELTQAMGGGFDIDRISPPEKYCTVLIFATGSGISPIRSLIE 187

Query: 189 SGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA 248
           SGF +  RSDVRLYYGARNL RMAYQD+FKEWESSGVKIVPVLS+PD  W+GE+GYVQAA
Sbjct: 188 SGFGANRRSDVRLYYGARNLNRMAYQDRFKEWESSGVKIVPVLSEPDDRWTGESGYVQAA 247

Query: 249 FSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL 280
           FSRAK+I NP  TG VLCGQKQMAE      L
Sbjct: 248 FSRAKQIDNPVATGAVLCGQKQMAEEVTSILL 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575613|ref|XP_003555933.1| PREDICTED: fruit protein pKIWI502-like [Glycine max]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/251 (72%), Positives = 211/251 (84%)

Query: 23  MSILRRIPLLHLKPQRRRLATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAP 82
           MSILRR+ L      RRR    A+AA+RQDTTVWTP PL+++  AAESLFH++ID+SDAP
Sbjct: 1   MSILRRLHLNLCTTTRRRRLATASAALRQDTTVWTPAPLSKVEHAAESLFHIAIDVSDAP 60

Query: 83  DIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLK 142
           D A+SHT AGQYLQLR+ D  KP+FLAIASPP  A+A G FEFLVKSVAGSTAE LC LK
Sbjct: 61  DHAASHTLAGQYLQLRLPDALKPSFLAIASPPKLAAARGVFEFLVKSVAGSTAEALCALK 120

Query: 143 KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY 202
           +GDVVE+SQVMG GF +DRI PP  + TVL+FATGSGISPIRSLIESGF + +RSDVRLY
Sbjct: 121 RGDVVELSQVMGNGFNIDRIHPPKNFGTVLVFATGSGISPIRSLIESGFDAAKRSDVRLY 180

Query: 203 YGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTG 262
           YGARNL+RMAYQD+FK+WESSGVKIVPVLSQPD +W+GE+GYVQAAFSR K+I +P  TG
Sbjct: 181 YGARNLQRMAYQDRFKDWESSGVKIVPVLSQPDESWTGESGYVQAAFSREKQISDPLATG 240

Query: 263 VVLCGQKQMAE 273
            VLCGQKQM E
Sbjct: 241 AVLCGQKQMTE 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2037708	295	AT1G15140 [Arabidopsis thalian	0.933	0.901	0.646	1.5e-90
TIGR_CMR|CHY_0934	280	CHY_0934 "hydrogenase, gamma s	0.585	0.596	0.267	3.5e-10
TIGR_CMR|GSU_0085	280	GSU_0085 "heterodisulfide redu	0.592	0.603	0.265	1.1e-09
TAIR|locus:2156917	360	FNR1 "AT5G66190" [Arabidopsis	0.480	0.380	0.270	1.9e-06
UNIPROTKB|P0AEN1	233	fre "riboflavin reductase [NAD	0.719	0.879	0.241	2.3e-06
TAIR|locus:2198651	369	FNR2 "AT1G20020" [Arabidopsis	0.487	0.376	0.261	2.6e-06
UNIPROTKB|P19734	353	dmpP "Phenol hydroxylase P5 pr	0.673	0.543	0.300	7.1e-06
UNIPROTKB|P10933	360	PETH "Ferredoxin--NADP reducta	0.480	0.380	0.277	7.4e-06
TIGR_CMR|CPS_1085	407	CPS_1085 "NADH:ubiquinone oxid	0.473	0.331	0.283	2.6e-05
UNIPROTKB|Q8EID5	405	nqrF "Na(+)-translocating NADH	0.456	0.320	0.286	4.5e-05

TAIR|locus:2037708 AT1G15140 [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 174/269 (64%), Positives = 203/269 (75%)

Query:     8 SPSLPHAHVSQTFPPMSILRRIPL---LHLKPQXXXXXXXXXXXXXQDTTVWTPTPLAEI 64
             +PS+ HAH S +  PM ILR +PL   L L                QD ++WTP PL+ I
Sbjct:     7 APSVTHAHFSHSLSPMFILRHLPLTRHLRLSRNNRVASVVSAAAVRQDASLWTPAPLSLI 66

Query:    65 SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIXXXXXXXXXXXXXE 124
               AAESLFH+SIDIS+APD+ +S+TR GQYLQ+RV DV KP+F+AI             E
Sbjct:    67 ESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPSFMAIASPPSLASSRGAFE 126

Query:   125 FLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184
             FLVKS+AGSTAE+LCGLKKG+ VE+S VMG GF +D I PP+EYPTVLIFATGSGISPIR
Sbjct:   127 FLVKSIAGSTAEILCGLKKGETVELSSVMGNGFNIDLIDPPEEYPTVLIFATGSGISPIR 186

Query:   185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGY 244
             SLIESGF +  RSDVRLYYGARNL RMAYQ+KFKEWES+GVK+VPVLSQPD  W GETGY
Sbjct:   187 SLIESGFGADRRSDVRLYYGARNLNRMAYQEKFKEWESAGVKVVPVLSQPDDGWKGETGY 246

Query:   245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
             VQAAF+RAK++  P+ TG VLCGQKQMAE
Sbjct:   247 VQAAFARAKQLSAPKATGAVLCGQKQMAE 275

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

TIGR_CMR|CHY_0934 CHY_0934 "hydrogenase, gamma subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 162 (62.1 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 49/183 (26%), Positives = 81/183 (44%)

Query:    90 RAGQYLQLRVVDVGKPTFLAIXXXXXXXXXXXXXEFLVKSVAGSTAEVLCGLKKGDVVEI 149
             + GQ  Q+ +  VG+ T ++I             EF +K V G    V+  ++ G  V I
Sbjct:    43 KPGQVAQISIFGVGEAT-ISITSSPTRTGML---EFSIKKV-GRLTSVIHQMEPGMKVGI 97

Query:   150 SQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD---VRLYYGAR 206
                 G  F  + ++  D    +L    G G++P+RSLI+   + + R D   V + YGAR
Sbjct:    98 RGPYGNHFPYEMMKGKD----LLFIGGGIGLAPLRSLIDFVLAPENRKDYGKVEILYGAR 153

Query:   207 NLKRMAYQ-DKFKEW-ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
             +   + ++ D F  W +    K+   + +P+  W G  G+V A         NPQ    +
Sbjct:   154 SSADLCFKYDLFDNWPKQPDTKVYVTIDRPEEGWDGHVGFVPAYLEELNP--NPQNKVTI 211

Query:   265 LCG 267
              CG
Sbjct:   212 TCG 214

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|GSU_0085 GSU_0085 "heterodisulfide reductase, cytochrome reductase subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 50/188 (26%), Positives = 81/188 (43%)

Query:    90 RAGQYLQLRVVDVGKPTFLAIXXXXXXXXXXXXXEFLVKSVAGSTAEVLCGLKKGDVVEI 149
             RAGQ+ +      G+ TF                E   ++V G   E L  L+ GD + +
Sbjct:    44 RAGQFAEYSAFGAGEATFCI----ASAPTRQGYIECCFRAV-GRVTEALRSLETGDTIGV 98

Query:   150 SQVMGRGFAVDRIQPPDEYPTVLIFATGS-GISPIRSLIESGFSSKER-SDVRLYYGARN 207
                 G  F V+       +   L+F  G   + P+R+LI      +E+  D+ + YGAR 
Sbjct:    99 RGPYGNSFPVEEF-----FGKNLVFVAGGIALPPLRTLIWQCLDWREKFGDITIVYGART 153

Query:   208 LKRMAYQDKFKEWES-SGVKIVPVLSQPDGN---WSGETGYVQAAFSRAKKIFNPQGTGV 263
                + Y+ + +EWE  S V++V  +  P GN   W G+ G+V     +A    +   T  
Sbjct:   154 EADLVYKRELREWEERSDVRLVKTVD-PGGNSPSWDGQVGFVPTVLEQAAPAAD--NTIA 210

Query:   264 VLCGQKQM 271
             ++CG   M
Sbjct:   211 LVCGPPVM 218

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

TAIR|locus:2156917 FNR1 "AT5G66190" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 42/155 (27%), Positives = 73/155 (47%)

Query:   130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
             V G  +  LC LK GD  +I+  +G+    + + P D   T+++  TG+GI+P RS +  
Sbjct:   174 VKGVCSNFLCDLKPGDEAKITGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFLWK 229

Query:   190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
              F  +E  D +      L+ G      + Y+++F   KE      ++   +S+   N  G
Sbjct:   230 MFF-EEHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKNPDNFRLDFAVSREQTNEKG 288

Query:   241 ETGYVQAAFSR-AKKIFN---PQGTGVVLCGQKQM 271
             E  Y+Q   +  A++++       T V +CG K M
Sbjct:   289 EKMYIQTRMAEYAEELWELLKKDNTFVYMCGLKGM 323

GO:0003959 "NADPH dehydrogenase activity" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IDA

GO:0045157 "electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|P0AEN1 fre "riboflavin reductase [NAD(P)H] / FMN reductase" [Escherichia coli K-12 (taxid:83333)]

 Score = 129 (50.5 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 56/232 (24%), Positives = 101/232 (43%)

Query:    61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTF-LAIXXXXXXXXX 119
             +  +    ++++ V I     PD A S  RAGQYL + + +  K  F +A          
Sbjct:     8 VTSVEAITDTVYRVRI----VPDAAFSF-RAGQYLMVVMDERDKRPFSMASTPDEKGFIE 62

Query:   120 XXXXEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSG 179
                    +   A +  + +  LK   +V +    G  +  D     +E P +LI A G+G
Sbjct:    63 LHIGASEINLYAKAVMDRI--LKDHQIV-VDIPHGEAWLRD----DEERPMILI-AGGTG 114

Query:   180 ISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK--EWESSGVKIVPVLSQPDGN 237
              S  RS++ +  +     D+ +Y+G R  + +    + +    +  G+++VPV+ QP+  
Sbjct:   115 FSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAG 174

Query:   238 WSGETGYVQAAFSRAKKIFNPQGT----GVVLCGQKQMAEVCY-CFCLEFSA 284
             W G TG V  A      +    GT     + + G+ +MA++    FC E +A
Sbjct:   175 WRGRTGTVLTA------VLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNA 220

GO:0052875 "riboflavin reductase (NADH) activity" evidence=IEA

GO:0042602 "riboflavin reductase (NADPH) activity" evidence=IEA

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0047138 "aquacobalamin reductase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2198651 FNR2 "AT1G20020" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 41/157 (26%), Positives = 75/157 (47%)

Query:   128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
             ++V G  +  LC L  G  V+++  +G+    + + P D   TV++ ATG+GI+P RS +
Sbjct:   181 ETVKGVCSNFLCDLAPGSDVKLTGPVGK----EMLMPKDPNATVIMLATGTGIAPFRSFL 236

Query:   188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWESSG---VKIVPVLSQPDGNW 238
                F  K   D +      L+ G      + YQ++F + ++      ++   +S+   N 
Sbjct:   237 WKMFFEKH-DDYKFNGLAWLFLGVPTTSSLLYQEEFDKMKAKAPENFRVDYAISREQAND 295

Query:   239 SGETGYVQAAFSR--AK--KIFNPQGTGVVLCGQKQM 271
              GE  Y+Q   ++  A+  ++     T V +CG K M
Sbjct:   296 KGEKMYIQTRMAQYAAELWELLKKDNTFVYMCGLKGM 332

GO:0003959 "NADPH dehydrogenase activity" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|P19734 dmpP "Phenol hydroxylase P5 protein" [Pseudomonas sp. CF600 (taxid:79676)]

 Score = 129 (50.5 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 67/223 (30%), Positives = 96/223 (43%)

Query:    61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIXXXXXXXXXX 120
             L ++SP  + L H+ +D    P       +AGQY+ L +  +      ++          
Sbjct:   112 LVDLSPTIKGL-HIKLD-RPMP------FQAGQYVNLALPGIDGTRAFSLANPPSRNDEV 163

Query:   121 XXXEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF-ATGSG 179
                  LV+  A +T  +   LK GD VE+S   G+ F  D  Q  D     LIF A GSG
Sbjct:   164 ELHVRLVEGGA-ATGFIHKQLKVGDAVELSGPYGQFFVRDS-QAGD-----LIFIAGGSG 216

Query:   180 ISPIRSLIESGFSSKERSDVR---LYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP 234
             +S  +S+I       ER D R   L+ GARN   +   + F+E  +       VP L+Q 
Sbjct:   217 LSSPQSMI---LDLLERGDTRRITLFQGARNRAELYNCELFEELAARHPNFSYVPALNQA 273

Query:   235 --DGNWSGETGYVQAAFSRAKKIFNPQ--GTGVVLCGQKQMAE 273
               D  W G  G+V  A   AK  F+ +  G    LCG   M +
Sbjct:   274 NDDPEWQGFKGFVHDA---AKAHFDGRFGGQKAYLCGPPPMID 313

GO:0005727 "extrachromosomal circular DNA" evidence=IDA

GO:0018662 "phenol 2-monooxygenase activity" evidence=IDA

GO:0046191 "aerobic phenol-containing compound catabolic process" evidence=IDA

UNIPROTKB|P10933 PETH "Ferredoxin--NADP reductase, leaf isozyme, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 129 (50.5 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 43/155 (27%), Positives = 73/155 (47%)

Query:   130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
             V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct:   174 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 229

Query:   190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
              F  K   D +      L+ G      + Y+++F   KE      ++   +S+   N  G
Sbjct:   230 MFFEKHE-DYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKG 288

Query:   241 ETGYVQAAFSR-AKKIFN---PQGTGVVLCGQKQM 271
             E  Y+Q   ++ A++++       T V +CG K M
Sbjct:   289 EKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGM 323

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CPS_1085 CPS_1085 "NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 42/148 (28%), Positives = 67/148 (45%)

Query:   131 AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190
             AG  +  +  LK GD V IS   G  FA +     +E   ++    G+G++P+RS I   
Sbjct:   241 AGKMSSFIFSLKAGDKVTISGPFGEFFAKET---DNE---MVFIGGGAGMAPMRSHIFDQ 294

Query:   191 FSSKE-RSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIVPVLS--QPDGNWSGETGYV 245
                 E +  +  +YGAR+ + M Y+D +     ++   +    LS  QP+ NW G TG++
Sbjct:   295 LKRLESKRKMSFWYGARSKREMFYEDDYNGLAADNDNFQWHVALSDPQPEDNWDGLTGFI 354

Query:   246 Q-AAFSRAKKIFN-PQGTGVVLCGQKQM 271
                 F    K    P+     +CG   M
Sbjct:   355 HNVLFEEYLKDHEAPEDCEYYMCGPPMM 382

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|Q8EID5 nqrF "Na(+)-translocating NADH-quinone reductase subunit F" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 123 (48.4 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 41/143 (28%), Positives = 64/143 (44%)

Query:   132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
             G  +  +  LK GD V IS   G  F  D      +   V I   G+G++P+RS I    
Sbjct:   240 GKMSSYIFNLKAGDKVTISGPFGEFFVKDT-----DAEMVFI-GGGAGMAPMRSHIFDQL 293

Query:   192 SSKE-RSDVRLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLSQP--DGNWSGETGYVQ 246
              SK+ +  +  +YGAR+ + + YQ  F    +     V    LS+P  + NW+G TG++ 
Sbjct:   294 KSKKTKRKMSFWYGARSTREVFYQQDFDTLAAENDNFVWHVALSEPLPEDNWTGYTGFIH 353

Query:   247 AAF--SRAKKIFNPQGTGVVLCG 267
                  +  K    P+     +CG
Sbjct:   354 NVLYENYLKNHKAPEDCEFYMCG 376

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.6680.1 hypothetical protein (255 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
cd06211	238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	3e-29
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	1e-28
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	4e-27
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	3e-23
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	6e-23
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	2e-20
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	8e-19
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	2e-18
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	5e-18
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	1e-16
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	1e-16
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	5e-15
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	7e-15
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	1e-14
PRK08051	232	PRK08051, fre, FMN reductase; Validated	2e-14
cd06213	227	cd06213, oxygenase_e_transfer_subunit, The oxygena	1e-12
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	1e-12
cd06218	246	cd06218, DHOD_e_trans, FAD/NAD binding domain in t	2e-12
cd06214	241	cd06214, PA_degradation_oxidoreductase_like, NAD(P	7e-12
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	1e-11
cd06220	233	cd06220, DHOD_e_trans_like2, FAD/NAD binding domai	3e-11
TIGR01941	405	TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, N	1e-10
COG2871	410	COG2871, NqrF, Na+-transporting NADH:ubiquinone ox	8e-10
cd06209	228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	1e-09
cd06190	232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	1e-09
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	2e-09
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	3e-09
PLN03115	367	PLN03115, PLN03115, ferredoxin--NADP(+) reductase;	1e-08
cd06191	231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	1e-07
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	1e-07
cd06210	236	cd06210, MMO_FAD_NAD_binding, Methane monooxygenas	2e-07
PRK05464	409	PRK05464, PRK05464, Na(+)-translocating NADH-quino	2e-07
PRK00054	250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	3e-07
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	4e-07
PRK08221	263	PRK08221, PRK08221, anaerobic sulfite reductase su	1e-06
cd06219	248	cd06219, DHOD_e_trans_like1, FAD/NAD binding domai	1e-06
TIGR02911	261	TIGR02911, sulfite_red_B, sulfite reductase, subun	2e-06
cd06192	243	cd06192, DHOD_e_trans_like, FAD/NAD binding domain	4e-06
COG0369	587	COG0369, CysJ, Sulfite reductase, alpha subunit (f	5e-06
cd06184	247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	8e-06
TIGR03224	411	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc	2e-05
COG4097	438	COG4097, COG4097, Predicted ferric reductase [Inor	3e-05
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	1e-04
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	1e-04
cd06182	267	cd06182, CYPOR_like, NADPH cytochrome p450 reducta	2e-04
cd06207	382	cd06207, CyPoR_like, NADPH cytochrome p450 reducta	4e-04
PTZ00306	1167	PTZ00306, PTZ00306, NADH-dependent fumarate reduct	5e-04
PLN03116	307	PLN03116, PLN03116, ferredoxin--NADP+ reductase; P	6e-04
cd06206	384	cd06206, bifunctional_CYPOR, These bifunctional pr	0.001
cd06186	210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	0.004

>gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

 Score =  110 bits (278), Expect = 3e-29
 Identities = 66/194 (34%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC--GLKKGDVV 147
           +AGQY+ L+          +IAS PS    +G  E  ++ V G  A       LK+GD +
Sbjct: 37  QAGQYVNLQAPGYEGTRAFSIASSPS---DAGEIELHIRLVPGGIATTYVHKQLKEGDEL 93

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
           EIS   G  F    ++  D+ P + I A GSG+S  RS+I       +   + L++GAR 
Sbjct: 94  EISGPYGDFF----VRDSDQRPIIFI-AGGSGLSSPRSMILDLLERGDTRKITLFFGART 148

Query: 208 LKRMAYQDKFKEWES--SGVKIVPVLS--QPDGNWSGETGYVQAAFSRAKKIFNPQGTG- 262
              + Y D+F+  E      K VP LS   P+ NW G TG+V  A   AKK F     G 
Sbjct: 149 RAELYYLDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDA---AKKHFKNDFRGH 205

Query: 263 -VVLCGQKQMAEVC 275
              LCG   M + C
Sbjct: 206 KAYLCGPPPMIDAC 219

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score =  108 bits (272), Expect = 1e-28
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 16/195 (8%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGDVV 147
            AGQYL L ++D G     +IAS P      G  E  +++V G   +  V   LK+  +V
Sbjct: 27  LAGQYLDL-LLDDGDKRPFSIASAPH---EDGEIELHIRAVPGGSFSDYVFEELKENGLV 82

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
            I   +G  F    ++   + P +LI A G+G +PI+S++E   +   +  + LY+GAR 
Sbjct: 83  RIEGPLGDFF----LREDSDRPLILI-AGGTGFAPIKSILEHLLAQGSKRPIHLYWGART 137

Query: 208 LKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVL 265
            + +   +  + W         VPVLS+P+  W G TG V  A    +   +     V  
Sbjct: 138 EEDLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAV--LEDFPDLSDFDVYA 195

Query: 266 CGQKQMAEVCY-CFC 279
           CG  +M       F 
Sbjct: 196 CGSPEMVYAARDDFV 210

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score =  104 bits (262), Expect = 4e-27
 Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 90  RAGQYLQLRVVDVGKPT--FLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCGLKKGDV 146
           + GQY+ L +   G+      +IAS P      G  E  VK V  G  +  L  LK GD 
Sbjct: 24  KPGQYVDLHLPGDGRGLRRAYSIASSPD---EEGELELTVKIVPGGPFSAWLHDLKPGDE 80

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           VE+S   G  F      P +E   V++ A G GI+P RS++    + K   ++ L YGAR
Sbjct: 81  VEVSGPGGDFF-----LPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGAR 135

Query: 207 NLKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
               + + D+ +E    G   ++V  LS+      G  G +         + +  G  V 
Sbjct: 136 TPADLLFLDELEELAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVY 195

Query: 265 LCGQKQMAE 273
           +CG   MA+
Sbjct: 196 ICGPPAMAK 204

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score = 95.4 bits (238), Expect = 3e-23
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 20/203 (9%)

Query: 69  ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVK 128
              F + ++     D      + GQ++ L +  VG+       S  S  +  G  E  ++
Sbjct: 11  IKTFTLRLED---DDEELFTFKPGQFVMLSLPGVGEAPI----SISSDPTRRGPLELTIR 63

Query: 129 SVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT--VLIFATGSGISPIRSL 186
            V G   E L  LK GD V +    G GF      P +E     +L+ A G G++P+RSL
Sbjct: 64  RV-GRVTEALHELKPGDTVGLRGPFGNGF------PVEEMKGKDLLLVAGGLGLAPLRSL 116

Query: 187 IESGFSSKER-SDVRLYYGARNLKRMAYQDKFKEWE-SSGVKIVPVLSQPDGNWSGETGY 244
           I     ++E    V L YGAR  + + ++++ KEW   S V+++  + + +  W+G  G 
Sbjct: 117 INYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGL 176

Query: 245 VQAAFSRAKKIFNPQGTGVVLCG 267
           V           +P  T  ++CG
Sbjct: 177 VTDLLPELT--LDPDNTVAIVCG 197

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 93.8 bits (234), Expect = 6e-23
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 15/191 (7%)

Query: 90  RAGQYLQLRVVDVGKPT-FLAIASPPSFASASGAFEFLVKSVAG--STAEVLCGLKKGDV 146
            AGQY+ + V    +     + A+PP+     G  EF V++V G   +  +   LK GD 
Sbjct: 25  WAGQYVNVTVPGRPRTWRAYSPANPPN---EDGEIEFHVRAVPGGRVSNALHDELKVGDR 81

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           V +S   G       ++   + P + I A G+G++P+R+++E      E   V L++GAR
Sbjct: 82  VRLSGPYGT----FYLRRDHDRPVLCI-AGGTGLAPLRAIVEDALRRGEPRPVHLFFGAR 136

Query: 207 NLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
             + +   +      +    +++VPV+S  +G W+G  G V     R     +     + 
Sbjct: 137 TERDLYDLEGLLALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDGP--DWADHDIY 194

Query: 265 LCGQKQMAEVC 275
           +CG   M +  
Sbjct: 195 ICGPPAMVDAT 205

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 175 ATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE--SSGVKIVPVLS 232
           A G+GI+P+ S++++    ++ ++V L YG R    +  +++ +E       +K+V V S
Sbjct: 3   AGGTGIAPLYSVLKALLEDEDGTEVYLVYGNRTEDDLLLREELEELAKKYPNLKVVAV-S 61

Query: 233 QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           + D  W G  GYV  A        +   T V +CG   M +
Sbjct: 62  RTDDGWYGRKGYVTDALLEEHLSEDLGDTDVYVCGPPPMMK 102

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 83.0 bits (206), Expect = 8e-19
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 27/198 (13%)

Query: 90  RAGQYLQLRV-VDVGKPTFLAIASPPSFASASGA--FEFLVKSV-AGSTAEVLCGLKKGD 145
           +AGQ+ +L +  D GK     +    S ASA      EF +  V  G     L  LK GD
Sbjct: 26  QAGQFTKLGLPNDDGKL----VRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLKPGD 81

Query: 146 VVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD-VRLYY 203
            + +  +  G    +D + P      + + ATG+GI+P  S++       ER D + L +
Sbjct: 82  TIYVGKKPTGF-LTLDEVPPGK---RLWLLATGTGIAPFLSMLRD-LEIWERFDKIVLVH 136

Query: 204 GARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN--- 257
           G R  + +AYQD+ +          + VP++S+   N +  TG +      + ++     
Sbjct: 137 GVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKENGAL-TGRIPDLI-ESGELEEHAG 194

Query: 258 ----PQGTGVVLCGQKQM 271
               P+ + V+LCG  QM
Sbjct: 195 LPLDPETSHVMLCGNPQM 212

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 19/197 (9%)

Query: 82  PDIASSHTRAGQYLQLRVVDVG-KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139
               +   + GQ++ LRV     +P   ++AS P      G  E  ++    G   + + 
Sbjct: 29  LPFVALTFKPGQFVMLRVPGGVRRP--YSLASAPD---DKGELELHIRVYEVGKVTKYIF 83

Query: 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDV 199
           GLK+GD + +   +G GF  ++I  P     VL+ A G+GI+P+ ++ +      + + V
Sbjct: 84  GLKEGDKIRVRGPLGNGFLREKIGKP-----VLLIAGGTGIAPLYAIAKELKEKGDANKV 138

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ 259
            L YGAR  K +   D+ +E   +  ++ PV       W G  G+V       K++ + +
Sbjct: 139 TLLYGARTAKDLLLLDELEEL--AEKEVHPVTDD---GWKGRKGFVTTDV--LKELLDLE 191

Query: 260 GTGVVLCGQKQMAEVCY 276
              V +CG   M +   
Sbjct: 192 VDDVYICGPPAMVKAVR 208

Length = 252

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 81.2 bits (201), Expect = 5e-18
 Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 26/173 (15%)

Query: 110 IASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169
           IA+PP   S        +    GS+   +  LK GD V  S   G  F         +  
Sbjct: 107 IATPPPGNSD-------IPPGIGSS--YIFNLKPGDKVTASGPFGEFFI-----KDTDRE 152

Query: 170 TVLIFATGSGISPIRSLIESGFSSKERSDVR---LYYGARNLKRMAYQDKFK--EWESSG 224
            V I   G+G++P+RS I      K     R    +YGAR+LK + YQ++F+  E E   
Sbjct: 153 MVFIGG-GAGMAPLRSHIFHLL--KTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPN 209

Query: 225 VKIVPVLS--QPDGNWSGETGYVQAAFSR--AKKIFNPQGTGVVLCGQKQMAE 273
            K  PVLS  QP+ NW G TG++         KK   P+     LCG   M  
Sbjct: 210 FKYHPVLSEPQPEDNWDGYTGFIHQVLLENYLKKHPAPEDIEFYLCGPPPMNS 262

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 20/192 (10%)

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGS--TAE 136
            PD        GQY+ + + + G+P   A  ++S P        +   VK   G   +  
Sbjct: 27  PPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD---EDSLYRISVKREDGGGGSNW 83

Query: 137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER 196
           +   LK GD +E+S   G  F +D +        +L+ A G GI+P  S++ +    +  
Sbjct: 84  LHDHLKVGDTLEVSAPAGD-FVLDDLPERK----LLLLAGGIGITPFLSMLRT-LLDRGP 137

Query: 197 SDVRLYYGARNLKRMAYQD-KFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255
           +DV L + AR    +A++D      E     ++ + ++         G +    SR    
Sbjct: 138 ADVVLVHAARTPADLAFRDELELAAELPNALLLGLYTE----RGKLQGRIDV--SRLLSA 191

Query: 256 FNPQGTGVVLCG 267
               G  V LCG
Sbjct: 192 APDGGREVYLCG 203

Length = 266

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 19/219 (8%)

Query: 59  TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFAS 118
             +  +      +  + + + +   I      AGQY+ + V    +    ++A+ P+   
Sbjct: 3   GTVVAVEALTHDIRRLRLRLEEPEPIK---FFAGQYVDITVPGTEETRSFSMANTPA--- 56

Query: 119 ASGAFEFLVKSVAGST-AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFAT 176
             G  EF++K   G   +  L  GL  GD V ++   G       ++   + P VLI   
Sbjct: 57  DPGRLEFIIKKYPGGLFSSFLDDGLAVGDPVTVTGPYGTCT----LRESRDRPIVLI-GG 111

Query: 177 GSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQ- 233
           GSG++P+ SL+    +S     VR +YGAR  + + Y ++             +P LS+ 
Sbjct: 112 GSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIAALGEKIPDFTFIPALSES 171

Query: 234 -PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
             D  WSGETG V     R +      G  V LCG   M
Sbjct: 172 PDDEGWSGETGLVTEVVQRNEA--TLAGCDVYLCGPPPM 208

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 73.4 bits (181), Expect = 5e-15
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 17/166 (10%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG--STAEVLCGLKKGDVV 147
            AGQY++  + D GK    +IA+ P    + G  E  ++ + G   T  V   LK+ D++
Sbjct: 133 LAGQYIEFILKD-GKRRSYSIANAPH---SGGPLELHIRHMPGGVFTDHVFGALKERDIL 188

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
            I   +G  F    ++   + P VL+ A+G+G +PI+S++E   +   +  V LY+GAR 
Sbjct: 189 RIEGPLGTFF----LREDSDKPIVLL-ASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARR 243

Query: 208 LKRMAYQDKF-KEW--ESSGVKIVPVLSQPDG--NWSGETGYVQAA 248
            + + Y     ++W  E    + VPV+S       W+G TG+V  A
Sbjct: 244 PEDL-YLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQA 288

Length = 339

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score = 71.8 bits (177), Expect = 7e-15
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 29/192 (15%)

Query: 91  AGQYLQLRVVDVGK-------PTFLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCGLK 142
            GQ+++L+  D G+       P      SP       G F+ L+K    G  ++ L  LK
Sbjct: 31  VGQHVELKAPDDGEQVVRPYTPI-----SPDD---DKGYFDLLIKIYPGGKMSQYLHSLK 82

Query: 143 KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRL 201
            GD VEI    G+       +P  +   + + A G+GI+P+  LI +     E ++ + L
Sbjct: 83  PGDTVEIRGPFGK----FEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISL 138

Query: 202 YYGARNLKRMAYQDKFKEWESSG---VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP 258
            Y  R  + +  +++  E         K+  VLS+P   W G  G++       K+   P
Sbjct: 139 LYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEM--IKEHLPP 196

Query: 259 QGTG---VVLCG 267
             +    V++CG
Sbjct: 197 PPSEDTLVLVCG 208

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF-----S 192
           LC LK GD V+I+  +G+      + P D   T+++ ATG+GI+P RS +   F      
Sbjct: 109 LCDLKPGDDVQITGPVGKTM----LLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHAD 164

Query: 193 SKERSDVRLYYGARNLKRMAYQD---KFKEWESSGVKIVPVLSQPDGNWSGETGYVQ-AA 248
            K      L++G  N   + Y D   K+ +      +I    S+   N  G   YVQ   
Sbjct: 165 YKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRI 224

Query: 249 FSRAKKIFN---PQGTGVVLCGQKQM 271
              A++I+N      T V +CG K M
Sbjct: 225 AEYAEEIWNLLDKDNTHVYICGLKGM 250

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|236142 PRK08051, fre, FMN reductase; Validated

 Score = 70.7 bits (174), Expect = 2e-14
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 22/191 (11%)

Query: 64  ISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASA---- 119
           +    ++++ V +     P+   S  RAGQYL + + +  K  F +IAS P         
Sbjct: 10  VEAITDTVYRVRL----VPEAPFSF-RAGQYLMVVMGEKDKRPF-SIASTPREKGFIELH 63

Query: 120 SGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSG 179
            GA E      A     V+  + K   +E+   +  G A  R +   E P +LI A G+G
Sbjct: 64  IGASEL--NLYAM---AVMERILKDGEIEVD--IPHGDAWLREE--SERPLLLI-AGGTG 113

Query: 180 ISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGN 237
            S  RS++ +  +      + LY+G R    +   D+ +        +  VPV+ QP+  
Sbjct: 114 FSYARSILLTALAQGPNRPITLYWGGREEDHLYDLDELEALALKHPNLHFVPVVEQPEEG 173

Query: 238 WSGETGYVQAA 248
           W G+TG V  A
Sbjct: 174 WQGKTGTVLTA 184

Length = 232

>gnl|CDD|99809 cd06213, oxygenase_e_transfer_subunit, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 29/216 (13%)

Query: 67  AAESLFH--VSIDI-SDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAF 123
           A E L H  V + +  D P       +AGQY +L +  +      + A+ P      G  
Sbjct: 7   AQERLTHDIVRLTVQLDRP----IAYKAGQYAELTLPGLPAARSYSFANAPQ---GDGQL 59

Query: 124 EFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGIS 181
            F ++ V G   +  +    + G+ + +    G  F +     P + P + I A GSG++
Sbjct: 60  SFHIRKVPGGAFSGWLFGADRTGERLTVRGPFGD-FWLR----PGDAPILCI-AGGSGLA 113

Query: 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ----DKFKEWESSGVKIVPVLSQ--PD 235
           PI +++E   ++  + DV L +GAR  +R  Y                + +PVLS+   D
Sbjct: 114 PILAILEQARAAGTKRDVTLLFGART-QRDLYALDEIAAIAARWRGRFRFIPVLSEEPAD 172

Query: 236 GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
            +W G  G V    +          T   LCG   M
Sbjct: 173 SSWKGARGLVTEHIAE----VLLAATEAYLCGPPAM 204

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 227

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 28/206 (13%)

Query: 82  PDIASSHT-RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG 140
           P++A S T + GQ++Q+ +  VG+   ++I S P+     G FE  ++   G    V+  
Sbjct: 30  PELAESFTFKPGQFVQVTIPGVGEVP-ISICSSPT---RKGFFELCIRRA-GRVTTVIHR 84

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER-SDV 199
           LK+GD+V +    G GF VD +    E   +L+ A G G++P+RS++     ++ +  ++
Sbjct: 85  LKEGDIVGVRGPYGNGFPVDEM----EGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNI 140

Query: 200 RLYYGARNLKRMAYQDK----FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255
            L YGA+  + + + D+      E E   VKI+  +++ D  W G  G  Q    R  K 
Sbjct: 141 TLIYGAKYYEDLLFYDELIKDLAEAE--NVKIIQSVTR-DPEWPGCHGLPQGFIERVCKG 197

Query: 256 ----------FNPQGTGVVLCGQKQM 271
                      +P+ T   +CG   M
Sbjct: 198 VVTDLFREANTDPKNTYAAICGPPVM 223

Length = 289

>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 33/199 (16%)

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS---GAFEFLVKSVAGSTAEV 137
           AP+IA+   + GQ++ LRV D   P  L    P S        G    L K V G    +
Sbjct: 18  APEIAA-AAKPGQFVMLRVPDGSDP-LLR--RPISIHDVDPEEGTITLLYK-VVGKGTRL 72

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISP----IRSLIESGFSS 193
           L  LK GD +++   +G GF +     PD+   VL+   G GI+P     + L E G   
Sbjct: 73  LSELKAGDELDVLGPLGNGFDL-----PDDDGKVLLVGGGIGIAPLLFLAKQLAERG--- 124

Query: 194 KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAK 253
                V +  G R+   +   ++F+   +  V +       DG+  G  G+V       K
Sbjct: 125 ---IKVTVLLGFRSADDLFLVEEFEALGAE-VYVATD----DGSA-GTKGFVTDLL---K 172

Query: 254 KIFNPQGTGVVL-CGQKQM 271
           ++       VV  CG + M
Sbjct: 173 ELLAEARPDVVYACGPEPM 191

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 246

>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

 Score = 63.3 bits (155), Expect = 7e-12
 Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 37/221 (16%)

Query: 74  VSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVA 131
           ++ D+ +    A  + R GQ+L LRV   G+    +  I S P            VK V 
Sbjct: 19  ITFDVPEELRDAFRY-RPGQFLTLRVPIDGEEVRRSYSICSSPG----DDELRITVKRVP 73

Query: 132 GSTAEV-LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           G          LK GD +E+    GR F +  +     Y   ++FA GSGI+P+ S++++
Sbjct: 74  GGRFSNWANDELKAGDTLEVMPPAGR-FTLPPLPGARHY---VLFAAGSGITPVLSILKT 129

Query: 190 GFSSKERSDVRLYYGARN------------LKRMAYQDKFKEWESSGVKIVPVLSQPDGN 237
             + +  S V L YG R             LK   Y D+          ++ VLS+  G+
Sbjct: 130 ALAREPASRVTLVYGNRTEASVIFREELADLKA-RYPDRL--------TVIHVLSREQGD 180

Query: 238 WSGETGYVQAAFSRA---KKIFNPQGTGVVLCGQKQMAEVC 275
                G + AA   A     +   +     LCG + M +  
Sbjct: 181 PDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAV 221

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 17/137 (12%)

Query: 90  RAGQYLQLRV----VDVGKPTFLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKK 143
           RAGQ+++L V    V   +    +++S P      G     VK+      +  ++  L  
Sbjct: 47  RAGQHVRLGVEIDGVRHWRS--YSLSSSP--TQEDGTITLTVKAQPDGLVSNWLVNHLAP 102

Query: 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIF-ATGSGISPIRSLIESGFSSKERSDVRLY 202
           GDVVE+SQ  G  F       PD  P  L+  A GSGI+P+ S++ +  +    +DV L 
Sbjct: 103 GDVVELSQPQG-DF-----VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLL 156

Query: 203 YGARNLKRMAYQDKFKE 219
           Y AR  + + + D+ + 
Sbjct: 157 YYARTREDVIFADELRA 173

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 21/169 (12%)

Query: 113 PPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL 172
           P S +   G     VK V G     L  LK+GD + I    G GF +           VL
Sbjct: 41  PMSLSYIDGPNSITVKKV-GEATSALHDLKEGDKLGIRGPYGNGFELV-------GGKVL 92

Query: 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLS 232
           +   G GI+P+  L E     K+ +DV +  GAR  + + + D+         ++  +++
Sbjct: 93  LIGGGIGIAPLAPLAERL---KKAADVTVLLGARTKEELLFLDRL----RKSDEL--IVT 143

Query: 233 QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE 281
             DG++ G  G+V       K++   +   + +CG + M         E
Sbjct: 144 TDDGSY-GFKGFVTDLL---KELDLEEYDAIYVCGPEIMMYKVLEILDE 188

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 233

>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDV 199
           LK GD V IS   G  FA D      +   V I   G+G++P+RS I       K +  +
Sbjct: 249 LKPGDKVTISGPFGEFFAKD-----TDAEMVFI-GGGAGMAPMRSHIFDQLKRLKSKRKI 302

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLS--QPDGNWSGETGYVQAAF--SRAK 253
             +YGAR+L+ M YQ+ F + E+     V    LS  QP+ NW+G TG++      +  K
Sbjct: 303 SFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENYLK 362

Query: 254 KIFNPQGTGVVLCGQKQMA 272
               P+     +CG   M 
Sbjct: 363 DHDAPEDCEFYMCGPPMMN 381

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump [Transport and binding proteins, Cations and iron carrying compounds]. Length = 405

>gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

 Score = 58.7 bits (142), Expect = 8e-10
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI-ESGFSSKERSDV 199
           LK GD V IS   G  FA D      +   V I   G+G++P+RS I +       +  +
Sbjct: 254 LKPGDKVTISGPFGEFFAKD-----TDAEMVFIGG-GAGMAPMRSHIFDQLKRLHSKRKI 307

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIV--PVLS--QPDGNWSGETGYVQAAF--SRAK 253
             +YGAR+L+ M YQ+ F + ++          LS   P+ NW G TG++      +  K
Sbjct: 308 SFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLK 367

Query: 254 KIFNPQGTGVVLCGQKQM 271
               P+     +CG   M
Sbjct: 368 DHEAPEDCEYYMCGPPLM 385

Length = 410

>gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 38/226 (16%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           + E+   ++S   +++++ +A  +A      GQY+ L+V     P      S  SF+SA 
Sbjct: 6   VTEVERLSDSTIGLTLELDEAGALA---FLPGQYVNLQV-----PGTDETRSY-SFSSAP 56

Query: 121 GA--FEFLVKSVAG--------STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           G    EFL++ + G          A+       GD + ++  +G  +  +  +P      
Sbjct: 57  GDPRLEFLIRLLPGGAMSSYLRDRAQP------GDRLTLTGPLGSFYLREVKRP------ 104

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK---FKEWESSGVKI 227
           +L+ A G+G++P  S+++          V L YG      +   D+     E    G   
Sbjct: 105 LLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELDRLEALAER-LPGFSF 163

Query: 228 VPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
             V++ PD +W    GYV        +  N     V LCG   M +
Sbjct: 164 RTVVADPD-SWHPRKGYVTDHL--EAEDLNDGDVDVYLCGPPPMVD 206

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228

>gnl|CDD|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 19/194 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTA-EVLCGLKK-GDVV 147
             GQY  L +  V      ++A+    A+ASG +EF++K   G  A   L    + GD +
Sbjct: 25  LPGQYALLALPGVEGARAYSMAN---LANASGEWEFIIKRKPGGAASNALFDNLEPGDEL 81

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD--VRLYYGA 205
           E+    G  +    ++P ++   V I A GSG++P+ S++     S   SD  V L+YG 
Sbjct: 82  ELDGPYGLAY----LRPDEDRDIVCI-AGGSGLAPMLSILRGAARSPYLSDRPVDLFYGG 136

Query: 206 RNLKRMAYQDKFKEWESSG--VKIVPVLSQPDG----NWSGETGYVQAAFSRAKKIFNPQ 259
           R    +   D+     + G  +++ P +S         W G TG+V              
Sbjct: 137 RTPSDLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD-RLA 195

Query: 260 GTGVVLCGQKQMAE 273
                  G   M +
Sbjct: 196 EFEFYFAGPPPMVD 209

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. Length = 232

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 69  ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAF---EF 125
           E     ++ +   P   +   RAGQ+  LR    G         P + +SA        F
Sbjct: 5   EVRPTTTLTL--EPRGPALGHRAGQFAFLRFDASGWEE----PHPFTISSAPDPDGRLRF 58

Query: 126 LVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRS 185
            +K++   T  +   LK G  V +    GR F  D  +       + I A G GI+P  +
Sbjct: 59  TIKALGDYTRRLAERLKPGTRVTVEGPYGR-FTFDDRRAR----QIWI-AGGIGITPFLA 112

Query: 186 LIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245
           L+E+  +  +   V L+Y  R+ +   + D+ +   ++   ++ V+  P          V
Sbjct: 113 LLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVIDSPSDGRLTLEQLV 172

Query: 246 QAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           +A       + +     V  CG   MA+
Sbjct: 173 RAL------VPDLADADVWFCGPPGMAD 194

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 21/196 (10%)

Query: 90  RAGQYLQLRVVDV-GKPTF--LAIASPPSFASASGAFEFLVKSVAGSTAEV----LCGLK 142
            AGQ++ LR+  + G       +IAS P+     G  E  VK V G   EV       +K
Sbjct: 32  LAGQHVDLRLTAIDGYTAQRSYSIASSPT---QRGRVELTVKRVPG--GEVSPYLHDEVK 86

Query: 143 KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY 202
            GD++E+   +G  F  +   P    P VL+ A GSGI P+ S+I            RL 
Sbjct: 87  VGDLLEVRGPIG-TFTWN---PLHGDPVVLL-AGGSGIVPLMSMIRYRRDLGWPVPFRLL 141

Query: 203 YGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGN-WSGETGYVQAAFSRAKKIFNPQ 259
           Y AR  + + ++D+ ++       + +   L++     W G  G + A    A+ +    
Sbjct: 142 YSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADL-IAELVPPLA 200

Query: 260 GTGVVLCGQKQMAEVC 275
           G  V +CG     E  
Sbjct: 201 GRRVYVCGPPAFVEAA 216

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   T+++ ATG+GI+P RS +  
Sbjct: 181 VKGVCSNFLCDLKPGAEVKITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 236

Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
            F  K   D +      L+ G      + Y+++F   KE      ++   +S+   N  G
Sbjct: 237 MFFEKH-DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKG 295

Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
           E  Y+Q   +       ++     T V +CG K M
Sbjct: 296 EKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKGM 330

Length = 367

>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 17/171 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGD 145
           R GQ++ L++   G+       + S P    A       VK V G   +  +   ++ G 
Sbjct: 29  RPGQHVTLKLDFDGEELRRCYSLCSSP----APDEISITVKRVPGGRVSNYLREHIQPGM 84

Query: 146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGA 205
            VE+    G    V + QPP  Y   L+ A GSGI+P+ ++I +   +   SD  L + A
Sbjct: 85  TVEVMGPQGH--FVYQPQPPGRY---LLVAAGSGITPLMAMIRATLQTAPESDFTLIHSA 139

Query: 206 RNLKRMAYQDKFKEWESS--GVKIVPVLSQ--PDGNWSGETGYVQAAFSRA 252
           R    M +  + +E       ++++ + ++   D +        + +   A
Sbjct: 140 RTPADMIFAQELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAA 190

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 231

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 15/114 (13%)

Query: 167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN------LKRM-AYQDKFKE 219
           E P V + A G+G+S    +++          V LYYG R+      L+R+ AY ++   
Sbjct: 209 ERPLVFV-AGGTGLSAFLGMLDELAEQGCSPPVHLYYGVRHAADLCELQRLAAYAERLP- 266

Query: 220 WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
                 +  PV+S+   +W G+ GY+   F +A+     Q   + LCG   M E
Sbjct: 267 ----NFRYHPVVSKASADWQGKRGYIHEHFDKAQ--LRDQAFDMYLCGPPPMVE 314

Length = 340

>gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 91  AGQYLQLRV--VDVGKPTFLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGDV 146
            GQ++++ +   D  +       S  +  +  G  EFL++ + G   +  +    K G  
Sbjct: 37  PGQFVEIEIPGTDTRRSY-----SLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQR 91

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           + +   +G  F +      +        A G+G++P+ S++       E  + RL++G  
Sbjct: 92  LNLRGPLGA-FGLRE----NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVN 146

Query: 207 NLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSR--AKKIFNPQGTG 262
               + Y D+ K    S   + +   + +P G W G  G V  A     A     P    
Sbjct: 147 TEAELFYLDELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPD--- 203

Query: 263 VVLCGQKQMAEVCYCFCLE 281
           + LCG   M +  +    E
Sbjct: 204 IYLCGPPGMVDAAFAAARE 222

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236

>gnl|CDD|235481 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 11/111 (9%)

Query: 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSD 198
            LK GD V IS   G  FA D      +   V I   G+G++P+RS I       K +  
Sbjct: 252 SLKPGDKVTISGPFGEFFAKD-----TDAEMVFIGG-GAGMAPMRSHIFDQLKRLKSKRK 305

Query: 199 VRLYYGARNLKRMAYQDKFK--EWESSGVKIVPVLS--QPDGNWSGETGYV 245
           +  +YGAR+L+ M Y + F     E+   K    LS   P+ NW+G TG++
Sbjct: 306 ISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFI 356

Length = 409

>gnl|CDD|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 13/131 (9%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASAS-GAFEFLVKSVAGSTAEVLCGLKKGDVVE 148
           + GQ++ + V  V     L    P S +         L + V G   + L  LK+GD ++
Sbjct: 33  KPGQFVMVWVPGVEP--LLER--PISISDIDKNEITILYRKV-GEGTKKLSKLKEGDELD 87

Query: 149 ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208
           I   +G GF ++ I        VL+   G G++P+  L +     K+  +V    GAR  
Sbjct: 88  IRGPLGNGFDLEEI-----GGKVLLVGGGIGVAPLYELAKEL--KKKGVEVTTVLGARTK 140

Query: 209 KRMAYQDKFKE 219
             + ++++F +
Sbjct: 141 DEVIFEEEFAK 151

Length = 250

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 35/173 (20%)

Query: 90  RAGQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGSTAEVLCG------- 140
           + GQ+L L +   G+  + A  ++S PS      +    VK V G       G       
Sbjct: 29  KPGQFLTLELEIDGETVYRAYTLSSSPS---RPDSLSITVKRVPG-------GLVSNWLH 78

Query: 141 --LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD 198
             LK GD +  S   G    +D   P D+    L+ + GSGI+P+ S+      ++  +D
Sbjct: 79  DNLKVGDELWASGPAGEFTLIDH--PADKL---LLLSAGSGITPMMSMARWLLDTRPDAD 133

Query: 199 VRLYYGARNLKRMAYQDKFKEWES-----SGVKIVPVLSQPD-GNWSGETGYV 245
           +   + AR+   + + D   E E         ++  +L QP  G W G  G +
Sbjct: 134 IVFIHSARSPADIIFAD---ELEELARRHPNFRLHLILEQPAPGAWGGYRGRL 183

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 17/157 (10%)

Query: 92  GQYLQLRVVDVGKPTFLAIASPPSFASAS-GAFEFLVKSVAGSTAEVLCGLKKGDVVEIS 150
           GQ+ ++ +  VG+       +P S +    G  +  ++ V G   + +  LK+GD + + 
Sbjct: 36  GQFFEVSLPKVGE-------APISVSDYGDGYIDLTIRRV-GKVTDEIFNLKEGDKLFLR 87

Query: 151 QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS--SKERSDVRLYYGARNL 208
              G GF VD  +  +    +++ A G+G++P++ L+   F    +E   + L  G +N 
Sbjct: 88  GPYGNGFPVDTYKGKE----LIVVAGGTGVAPVKGLMRY-FYENPQEIKSLDLILGFKNP 142

Query: 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245
             + +++  K W    + ++  L + +  + G  G V
Sbjct: 143 DDILFKEDLKRWREK-INLILTLDEGEEGYRGNVGLV 178

Length = 263

>gnl|CDD|99815 cd06219, DHOD_e_trans_like1, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)

Query: 68  AESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLV 127
           A ++    I+   AP IA    + GQ++ +R  + G+   L IA    +    G    +V
Sbjct: 10  APNVKLFEIE---APLIAK-KAKPGQFVIVRADEKGERIPLTIAD---WDPEKGTITIVV 62

Query: 128 KSVAGSTAEVLCGLKKGDVVEISQV---MGRGFAVDRIQPPDEYPTVLIFATGSGISPI- 183
           + V  ST E L  L++GD  +I  V   +G+   ++       Y TV+    G GI+PI 
Sbjct: 63  QVVGKSTRE-LATLEEGD--KIHDVVGPLGKPSEIE------NYGTVVFVGGGVGIAPIY 113

Query: 184 ---RSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219
              ++L E+G      + V    GAR    +  +D+F+ 
Sbjct: 114 PIAKALKEAG------NRVITIIGARTKDLVILEDEFRA 146

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, forming FADH2 via a semiquinone intermediate, and then transfers a hydride ion to convert NADP+ to NADPH. Length = 248

>gnl|CDD|131957 TIGR02911, sulfite_red_B, sulfite reductase, subunit B

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 92  GQYLQLRVVDVGKPTFLAIASPPSFAS-ASGAFEFLVKSVAGSTAEVLCGLKKGDVVEIS 150
           GQ+ ++ +   G+       +P S +    G  +  ++ V   T EV   LK+GD + + 
Sbjct: 34  GQFFEVSLPKYGE-------APISVSGIGEGYIDLTIRRVGKVTDEVF-TLKEGDNLFLR 85

Query: 151 QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS--SKERSDVRLYYGARNL 208
              G GF VD  +  +    +++ A G+G++P++ ++E  F    KE   + L  G +  
Sbjct: 86  GPYGNGFDVDNYKHKE----LVVVAGGTGVAPVKGVVEY-FVKNPKEIKSLNLILGFKTP 140

Query: 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245
             + +++   EW+ + + +   L + + ++ G  G V
Sbjct: 141 DDILFKEDIAEWKGN-INLTLTLDEAEEDYKGNIGLV 176

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum [Central intermediary metabolism, Sulfur metabolism]. Length = 261

>gnl|CDD|99789 cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 13/149 (8%)

Query: 81  APDIASSHTRAGQYLQLRVVDVGKPTFLAIA-SPPSFASASGAFEFLVKSVAGSTAEVLC 139
           AP  A    R GQ++ LR  +   P    I  S        G    LV+     T   + 
Sbjct: 18  APLAAR-LFRPGQFVFLRNFE--SPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKL-IA 73

Query: 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDV 199
            LK G+ +++   +G GF     + P +  TVL+ A G G++P+  + +    +   + V
Sbjct: 74  ELKPGEKLDVMGPLGNGF-----EGPKKGGTVLLVAGGIGLAPLLPIAK--KLAANGNKV 126

Query: 200 RLYYGARNLKRMAYQDKFKEWESSGVKIV 228
            +  GA+  K   + D++ E  +      
Sbjct: 127 TVLAGAKKAK-EEFLDEYFELPADVEIWT 154

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 243

>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 29/187 (15%)

Query: 104 KPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCGLKK-GDVVEISQVM 153
           KP   +IAS  S   +       V  V          G  +  L  L + GD + +    
Sbjct: 372 KPRLYSIAS--SPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQP 429

Query: 154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR-MA 212
            + F   R+    E P ++I   G+GI+P R+ ++   ++       L++G R+      
Sbjct: 430 NKNF---RLPEDPETPIIMI-GPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFL 485

Query: 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETG---YVQAAF-SRAKKIFN--PQGTGVVLC 266
           YQ++++E+   GV     L+     +S +     YVQ     +A +++    +G  + +C
Sbjct: 486 YQEEWEEYLKDGVLTRLDLA-----FSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVC 540

Query: 267 GQ-KQMA 272
           G  K MA
Sbjct: 541 GDAKGMA 547

Length = 587

>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR 200
           +K GDV+E+S   G  F +D      + P VLI + G GI+P+ S++E+  +      V 
Sbjct: 91  VKVGDVLEVSAPAGD-FVLD---EASDRPLVLI-SAGVGITPMLSMLEALAAEGPGRPVT 145

Query: 201 LYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGE----TGYVQAAFSRAKK 254
             + ARN    A++D+ +E  +    +K+    S+P+     E     G +  A    ++
Sbjct: 146 FIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLAL--LRE 203

Query: 255 IFNPQGTGVVLCG 267
           +  P      LCG
Sbjct: 204 LLLPADADFYLCG 216

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247

>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 30/161 (18%)

Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
            +V G  +  LC LKKGD V++    G  F    + P     ++++  TG+G +P+R++ 
Sbjct: 231 NAVRGVASNYLCDLKKGDKVQVIGPFGSTF----LMPNHPESSIMMICTGTGSAPMRAMT 286

Query: 188 E-------SGFSSKERSDVRLYYGARNLKRMAY----QDKFKEWESSGVKIVPVLSQPDG 236
           E        G   K    + L++GAR  + + Y    Q   K++            QP  
Sbjct: 287 ERRRRRRDHGEGGK----LMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSRTPEQP-- 340

Query: 237 NWSGETGYVQAAF-SRAKKIF---NPQGTGVVLCGQKQMAE 273
                  YVQ A   RA  +        T + +CG K M E
Sbjct: 341 -----KRYVQDAIRERAADVAALLKDPNTYIYICGLKGMEE 376

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411

>gnl|CDD|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 39/188 (20%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGA--FEFLVKSVAGSTAEVLCGLKKGDVV 147
           +AGQ+  L++    +   +    P + A +       F +K++   T  +   LK G  +
Sbjct: 244 QAGQFAFLKIE--IEEFRMR-PHPFTIACSHEGSELRFSIKALGDFTKTLKDNLKVGTKL 300

Query: 148 EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207
           E+    G+ F  +R        T +  A G GI+P  S++ +    K    V L+Y +RN
Sbjct: 301 EVDGPYGK-FDFERGLN-----TQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRN 354

Query: 208 LKRMAYQDKFKEW--ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVL 265
            +   Y ++ +    +   V +  +        S + GY+       +    P+   V  
Sbjct: 355 WEEALYAEELRALAQKLPNVVLHII-------DSSKDGYL-DQEDLERYPDRPRTRSVFF 406

Query: 266 CGQKQMAE 273
           CG  +M +
Sbjct: 407 CGPIKMMD 414

Length = 438

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 23/220 (10%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           +  +   +  +  V ++              GQY+ LR    G     +  S P      
Sbjct: 1   VVSLQRLSPDVLRVRLEPDRPLPY-----LPGQYVNLRRAG-GLARSYSPTSLPD---GD 51

Query: 121 GAFEFLVKSV-AGSTAEVLCGL-KKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178
              EF ++    G+ +  L    + G  + +    G+ F         E P +L+   G+
Sbjct: 52  NELEFHIRRKPNGAFSGWLGEEARPGHALRLQGPFGQAFYRPEYG---EGPLLLV-GAGT 107

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW---ESSGVKIVPVLSQPD 235
           G++P+  +  +      + ++RL +GAR+   +        W   E    + +P +S+  
Sbjct: 108 GLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPAL-LWLAREHPNFRYIPCVSEG- 165

Query: 236 GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC 275
              S     V+A    A      +   V LCG   M    
Sbjct: 166 ---SQGDPRVRAGRIAAHLPPLTRDDVVYLCGAPSMVNAV 202

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 90  RAGQYLQLRVVDVGKPT--FLAIASPPSFASASGAFEFLVKSVAGS--TAEVLCGLKKGD 145
             GQ+L LR    G+      +I S P    A G     VK + G   +      ++ GD
Sbjct: 34  APGQHLTLRREVDGEELRRSYSICSAP----APGEIRVAVKKIPGGLFSTWANDEIRPGD 89

Query: 146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGA 205
            +E+    G  F  D +  P     V   A GSGI+P+ S+ E+  +++ RS   L YG 
Sbjct: 90  TLEVMAPQGL-FTPD-LSTPHAGHYVA-VAAGSGITPMLSIAETVLAAEPRSTFTLVYGN 146

Query: 206 RNLKRMAYQD 215
           R    + + +
Sbjct: 147 RRTASVMFAE 156

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 46/206 (22%), Positives = 75/206 (36%), Gaps = 43/206 (20%)

Query: 65  SPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-----KPTFLAIASPPSFASA 119
             +  S  H+  D+S    +        +Y     + V      +P + +IAS P     
Sbjct: 11  PDSPRSTRHLEFDLSGNSVL--------KYQPGDHLGVIPPNPLQPRYYSIASSPDVDP- 61

Query: 120 SGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169
            G     V+ V           G  +  L GL+ G  V    V  R  A     P D   
Sbjct: 62  -GEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAKV---TVFIRP-APSFRLPKDPTT 116

Query: 170 TVLIFATGSGISPIRSLIESGF----SSKERSDVRLYYGARNLKR-MAYQDKFKEWESSG 224
            +++   G+GI+P R  ++       + K R    L++G RN      Y+++ +E    G
Sbjct: 117 PIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDG 176

Query: 225 VKIVPVLSQPDGNWSGETG----YVQ 246
                 L++ D  +S E      YVQ
Sbjct: 177 -----ALTRLDVAFSREQAEPKVYVQ 197

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267

>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 43/213 (20%), Positives = 73/213 (34%), Gaps = 68/213 (31%)

Query: 97  LRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDV 146
           L +  + KP + +I+S P           LV  V+          G  +  L GLK G  
Sbjct: 156 LELCPLIKPRYYSISSSP--LKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQR 213

Query: 147 VEISQVMGRGFAVDRIQP-----PDEYPTVLIFA-TGSGISPIRSLIE--SGFS--SKER 196
           V +            I+      P +    +I    G+G++P R+ ++  +       E 
Sbjct: 214 VTVF-----------IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEI 262

Query: 197 SDVRLYYGARNLKR-MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSR--AK 253
             V LY+G R+  +   Y+++ +E+E SGV                   +  AFSR   K
Sbjct: 263 GPVLLYFGCRHEDKDYLYKEELEEYEKSGV----------------LTTLGTAFSRDQPK 306

Query: 254 KI----------------FNPQGTGVVLCGQKQ 270
           K+                       + +CG   
Sbjct: 307 KVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTW 339

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382

>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 29/180 (16%)

Query: 112  SPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV 171
            SP +     G    L +   G+  E +  L+ GD VE+      G  ++R +P D+    
Sbjct: 970  SPITLPDDLGVISILARGDKGTLKEWISALRPGDSVEMKAC--GGLRIER-RPADKQ--- 1023

Query: 172  LIF-----------ATGSGISPIRSLIESGFSSKERSD----VRLYYGARNLKRMAYQDK 216
             +F           A G+G++P+  +I +    K   D    +RL Y A ++  + Y++ 
Sbjct: 1024 FVFRGHVIRKLALIAGGTGVAPMLQIIRAAL-KKPYVDSIESIRLIYAAEDVSELTYREL 1082

Query: 217  FKEWESSG---VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTG--VVLCGQKQM 271
             + +        K   VL+ P   W+   G+V  A  +      P      V +CG   M
Sbjct: 1083 LESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQ--SALQPPSKDLLVAICGPPVM 1140

Length = 1167

>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP--TVLIFATGSGISPIRSLIESGF---- 191
           LC  K GD V+I+   G+   +     P+E P  T ++ ATG+GI+P R  +   F    
Sbjct: 129 LCDAKPGDKVQITGPSGKVMLL-----PEEDPNATHIMVATGTGIAPFRGFLRRMFMEDV 183

Query: 192 -SSKERSDVRLYYGARNLKRMAYQDKF----KEWESSGVKIVPVLSQPDGNWSGETGYVQ 246
            + K      L+ G  N   + Y D+F    K++  +  +    LS+   N  G   YVQ
Sbjct: 184 PAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDN-FRYDYALSREQKNKKGGKMYVQ 242

Query: 247 AAFS-RAKKIFN--PQGTGVVLCGQKQM 271
                 + +IF     G  +  CG K M
Sbjct: 243 DKIEEYSDEIFKLLDNGAHIYFCGLKGM 270

Length = 307

>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 32/129 (24%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR----------LYYGARN-----L 208
           P D    +++ A G+G++P R  ++      ER+ +           L++G R+     L
Sbjct: 226 PSDPSTPLIMIAAGTGLAPFRGFLQ------ERAALLAQGRKLAPALLFFGCRHPDHDDL 279

Query: 209 KRMAYQDKFKEWESSG-VKIVPVLSQPDGNWSGETGYVQ-AAFSRAKKIFN--PQGTGVV 264
               Y+D+ +EWE++G V +    S+P G       YVQ   ++  ++++    QG  V 
Sbjct: 280 ----YRDELEEWEAAGVVSVRRAYSRPPGGG---CRYVQDRLWAEREEVWELWEQGARVY 332

Query: 265 LCGQKQMAE 273
           +CG  +MA 
Sbjct: 333 VCGDGRMAP 341

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384

>gnl|CDD|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 35/158 (22%)

Query: 68  AESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPP-----SFASAS-- 120
              +  ++I     P       + GQ++ L         F ++ S       + AS+   
Sbjct: 9   DSDVIRLTI-----PKPKPFKWKPGQHVYLN--------FPSLLSFWQSHPFTIASSPED 55

Query: 121 --GAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVD-----RIQPPDEYPTVLI 173
                  ++++  G T  +L    K     +S  +     V+       +    Y  VL+
Sbjct: 56  EQDTLSLIIRAKKGFTTRLLRKALKSPGGGVSLKV----LVEGPYGSSSEDLLSYDNVLL 111

Query: 174 FATGSGISP----IRSLIESGFSSKERSDVRLYYGARN 207
            A GSGI+     +R L+     +     V+L +  R+
Sbjct: 112 VAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRD 149

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation. Length = 210

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	100.0
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	100.0
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	100.0
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	100.0
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	100.0
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	100.0
PRK08051	232	fre FMN reductase; Validated	100.0
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	100.0
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	100.0
PRK10926	248	ferredoxin-NADP reductase; Provisional	100.0
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	100.0
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	100.0
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	100.0
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	100.0
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	100.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	100.0
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	100.0
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	100.0
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	100.0
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	100.0
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	100.0
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	100.0
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	100.0
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
PTZ00274	325	cytochrome b5 reductase; Provisional	100.0
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	100.0
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	100.0
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	100.0
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	100.0
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	100.0
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	100.0
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	100.0
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	100.0
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	100.0
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	100.0
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	100.0
PRK05713	312	hypothetical protein; Provisional	100.0
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	100.0
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	100.0
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	100.0
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	100.0
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	100.0
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	100.0
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	100.0
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	100.0
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	100.0
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	100.0
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	100.0
PRK05802	320	hypothetical protein; Provisional	100.0
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	100.0
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.98
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.97
cd06193	235	siderophore_interacting Siderophore interacting pr	99.97
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.97
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.96
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.96
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	99.95
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.94
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	99.94
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.94
cd06203	398	methionine_synthase_red Human methionine synthase	99.93
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.93
PLN02292	702	ferric-chelate reductase	99.92
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	99.92
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.91
PRK06214	530	sulfite reductase; Provisional	99.91
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.89
PLN02631	699	ferric-chelate reductase	99.89
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.88
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.87
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.85
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	99.8
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.78
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	99.77
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.74
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	99.67
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.5
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	99.36
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.06
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	98.68
PF04954	119	SIP: Siderophore-interacting protein; InterPro: IP	96.49
PLN02844	722	oxidoreductase/ferric-chelate reductase	85.1
PF00667	219	FAD_binding_1: FAD binding domain; InterPro: IPR00	80.7

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=100.00  E-value=3.8e-39  Score=293.36  Aligned_cols=219  Identities=20%  Similarity=0.377  Sum_probs=188.8

Q ss_pred             CCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      +..+.+++|++++.++++++.++|+.++..  ..+.|+||||+.|++++....|+|||+|.|..   ++.++|+||.++ 
T Consensus       103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~---~~~l~~~ik~~~~  177 (340)
T PRK11872        103 DTLKISGVVTAVELVSETTAILHLDASAHG--RQLDFLPGQYARLQIPGTDDWRSYSFANRPNA---TNQLQFLIRLLPD  177 (340)
T ss_pred             ccceeeEEEEEEEecCCCeEEEEEEcCCCC--CccCcCCCCEEEEEeCCCCceeecccCCCCCC---CCeEEEEEEECCC
Confidence            345668999999999999999999976421  13689999999999987666799999999864   789999999986 


Q ss_pred             CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223          132 GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (285)
Q Consensus       132 G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~  210 (285)
                      |.+|.+|+ ++++||+|.++||+|. |.++     ...++++|||||+||||+++|+++++..+...+++|+|++|+.++
T Consensus       178 G~~s~~L~~~l~~G~~v~i~gP~G~-f~l~-----~~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d  251 (340)
T PRK11872        178 GVMSNYLRERCQVGDEILFEAPLGA-FYLR-----EVERPLVFVAGGTGLSAFLGMLDELAEQGCSPPVHLYYGVRHAAD  251 (340)
T ss_pred             CcchhhHhhCCCCCCEEEEEcCcce-eEeC-----CCCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcEEEEEecCChHH
Confidence            57899997 5999999999999999 5554     235799999999999999999999987666678999999999999


Q ss_pred             cccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          211 MAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       211 ~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|.++|++|..  .+|+++.+++++++.|.+..|++++.+.+..  ....+..||+|||+.|++.+.+.|.++|+
T Consensus       252 l~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~--l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv  325 (340)
T PRK11872        252 LCELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQ--LRDQAFDMYLCGPPPMVEAVKQWLDEQAL  325 (340)
T ss_pred             hccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhh--cCcCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence            999999999987  4899999999888899999999998776531  22245689999999999999999999997

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=100.00  E-value=7e-39  Score=275.54  Aligned_cols=210  Identities=27%  Similarity=0.479  Sum_probs=182.4

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHH
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEV  137 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~  137 (285)
                      ++|++++.+++++++++|+.++.     ..|+||||+.|++++. ..|+|||++.|..   ++.++|+||.++ |.+|++
T Consensus         1 ~~v~~~~~~t~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~-~~r~ySi~s~~~~---~~~l~~~vk~~~~G~~s~~   71 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPAP-----LDFLAGQYLDLLLDDG-DKRPFSIASAPHE---DGEIELHIRAVPGGSFSDY   71 (224)
T ss_pred             CEEEEEEeCCCceEEEEEecCCC-----cccCCCCEEEEEcCCC-CceeeecccCCCC---CCeEEEEEEecCCCccHHH
Confidence            47999999999999999997652     6899999999999864 4789999999864   689999999986 678888


Q ss_pred             hhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 023223          138 LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK  216 (285)
Q Consensus       138 L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~  216 (285)
                      |++ +++||+|.++||+|.++ +..    ...++++|||||+||||++++++++++.+...+++|+|++|+.++++|+++
T Consensus        72 l~~~l~~G~~v~i~gP~G~~~-~~~----~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~  146 (224)
T cd06189          72 VFEELKENGLVRIEGPLGDFF-LRE----DSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDEL  146 (224)
T ss_pred             HHHhccCCCEEEEecCCccEE-ecc----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHH
Confidence            875 99999999999999944 432    246789999999999999999999987666789999999999999999999


Q ss_pred             HHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          217 FKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       217 l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |++|.++  +++++.++++++++|.+..|++++.+.+.  ..+..+..+|+|||+.|++++++.|.+.|+
T Consensus       147 l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~--~~~~~~~~v~vCGp~~m~~~~~~~l~~~G~  214 (224)
T cd06189         147 LEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLED--FPDLSDFDVYACGSPEMVYAARDDFVEKGL  214 (224)
T ss_pred             HHHHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhh--ccCccccEEEEECCHHHHHHHHHHHHHcCC
Confidence            9999874  88999899988788988999999887763  223456789999999999999999999997

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=100.00  E-value=7.7e-39  Score=285.20  Aligned_cols=221  Identities=24%  Similarity=0.430  Sum_probs=180.1

Q ss_pred             CCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        52 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      ++..|+.++|++++++++++..++|++..+.....+.|+||||+.|++++.+. ++|||+|.|..   ++.++|+||.. 
T Consensus         1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~-~pySias~p~~---~~~l~l~Ik~~-   75 (289)
T PRK08345          1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE-VPISICSSPTR---KGFFELCIRRA-   75 (289)
T ss_pred             CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCc-eeeEecCCCCC---CCEEEEEEEeC-
Confidence            35678899999999999998888887654321123579999999999986544 68999999864   68999999997 


Q ss_pred             CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccc
Q 023223          132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKR  210 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~  210 (285)
                      |.+|++|+++++||+|.++||+|.+|.++.    ...++++||||||||||+++|++++++.+ ...+|+|+|++|+.++
T Consensus        76 G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d  151 (289)
T PRK08345         76 GRVTTVIHRLKEGDIVGVRGPYGNGFPVDE----MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYED  151 (289)
T ss_pred             ChHHHHHHhCCCCCEEEEeCCCCCCCCccc----ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHH
Confidence            999999999999999999999999776542    23468999999999999999999987655 4579999999999999


Q ss_pred             cccHHHHHHHHH--CCCEEEEEeeCCCCCCCc------------cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHH
Q 023223          211 MAYQDKFKEWES--SGVKIVPVLSQPDGNWSG------------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCY  276 (285)
Q Consensus       211 ~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~------------~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~  276 (285)
                      ++|++||++|..  .+++++.++++++ +|.+            ..|++.+.+.+.  ..+.++..+|+|||++|++++.
T Consensus       152 ~~~~deL~~l~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~~~~~~vyiCGP~~m~~~v~  228 (289)
T PRK08345        152 LLFYDELIKDLAEAENVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDLFREA--NTDPKNTYAAICGPPVMYKFVF  228 (289)
T ss_pred             hhHHHHHHHHHhcCCCEEEEEEecCCC-CCcCccccccccccccccCchhhhhhhc--CCCccccEEEEECCHHHHHHHH
Confidence            999999999976  3788888888743 4432            246666655442  2334567899999999999999


Q ss_pred             HHHHhcCC
Q 023223          277 CFCLEFSA  284 (285)
Q Consensus       277 ~~L~~~Gv  284 (285)
                      +.|.++|+
T Consensus       229 ~~L~~~Gv  236 (289)
T PRK08345        229 KELINRGY  236 (289)
T ss_pred             HHHHHcCC
Confidence            99999987

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=100.00  E-value=2.3e-38  Score=274.77  Aligned_cols=216  Identities=28%  Similarity=0.461  Sum_probs=183.9

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~  134 (285)
                      ...++|.+++.++++++.++|+.+++.   ...|+||||+.|++++....|+|||++.+..   ++.++|+||.++ |.+
T Consensus         6 ~~~~~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~i~~~~~G~~   79 (238)
T cd06211           6 DFEGTVVEIEDLTPTIKGVRLKLDEPE---EIEFQAGQYVNLQAPGYEGTRAFSIASSPSD---AGEIELHIRLVPGGIA   79 (238)
T ss_pred             EEeEEEEEEEecCCCEEEEEEEcCCCC---cCccCCCCeEEEEcCCCCCccccccCCCCCC---CCEEEEEEEECCCCcc
Confidence            447999999999999999999987642   2479999999999987656789999999864   689999999985 678


Q ss_pred             hHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 023223          135 AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY  213 (285)
Q Consensus       135 s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~  213 (285)
                      |++|+ .+++||+|.++||+|+++ +..    +..++++|||||+||||++++++++++.+...+++|+|++|+.++++|
T Consensus        80 s~~l~~~l~~G~~v~i~gP~G~~~-~~~----~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~  154 (238)
T cd06211          80 TTYVHKQLKEGDELEISGPYGDFF-VRD----SDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYY  154 (238)
T ss_pred             hhhHhhcCCCCCEEEEECCccceE-ecC----CCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhcc
Confidence            99997 699999999999999844 432    245789999999999999999999987665678999999999999999


Q ss_pred             HHHHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHHHHhhhcC-CCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          214 QDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIF-NPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       214 ~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~-~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      .++|++|..+  +++++.+++++  ++.|.+..|++++.+.+.  .. +.++..+|+|||+.|++.+.+.|.+.|+
T Consensus       155 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv  228 (238)
T cd06211         155 LDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKH--FKNDFRGHKAYLCGPPPMIDACIKTLMQGRL  228 (238)
T ss_pred             HHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHHHHHHh--cccccccCEEEEECCHHHHHHHHHHHHHcCC
Confidence            9999999874  78888888874  357888899998866552  22 3356789999999999999999999997

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=100.00  E-value=1.6e-38  Score=275.34  Aligned_cols=218  Identities=19%  Similarity=0.402  Sum_probs=185.8

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcc-cccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDI-ASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l-~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s  135 (285)
                      .++|+++++++++++.++|+.++..++ ....|+||||+.|++++....|+|||++.|..   ++.++|+||..+ |.+|
T Consensus         3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~~~i~~~~~G~~s   79 (236)
T cd06210           3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNW---DGRLEFLIRLLPGGAFS   79 (236)
T ss_pred             eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCC---CCEEEEEEEEcCCCccc
Confidence            688999999999999999998653100 12579999999999997677889999999864   689999999875 6789


Q ss_pred             HHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223          136 EVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (285)
Q Consensus       136 ~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (285)
                      ++|++ +++||+|.++||+|+ |.++.    ...++++|||||+||||+++|+++++..+...+++|+|++|+.++++|.
T Consensus        80 ~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~  154 (236)
T cd06210          80 TYLETRAKVGQRLNLRGPLGA-FGLRE----NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYL  154 (236)
T ss_pred             hhhhhCcCCCCEEEEecCcce-eeecC----CCCccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecCCHHHhhhH
Confidence            99997 999999999999999 76652    2457899999999999999999998876666789999999999999999


Q ss_pred             HHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|++|.+.  +++++.+++++++.|.+..|++.+.+.+.. ........+|+|||++|++.+++.|.++|+
T Consensus       155 ~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l-~~~~~~~~vyicGp~~m~~~~~~~l~~~G~  225 (236)
T cd06210         155 DELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDL-ASSDAKPDIYLCGPPGMVDAAFAAAREAGV  225 (236)
T ss_pred             HHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhh-cccCCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence            999999874  899999999877788888999988766532 112245689999999999999999999987

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=100.00  E-value=2.5e-38  Score=272.82  Aligned_cols=211  Identities=21%  Similarity=0.399  Sum_probs=182.1

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      .++|++++.+++++++++|+.++.   ....|+||||+.|++++....|+|||++.|.    ++.++|+||.++ |.+|+
T Consensus         3 ~~~V~~~~~~t~~~~~l~l~~~~~---~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~----~~~i~~~i~~~~~G~~s~   75 (228)
T cd06209           3 EATVTEVERLSDSTIGLTLELDEA---GALAFLPGQYVNLQVPGTDETRSYSFSSAPG----DPRLEFLIRLLPGGAMSS   75 (228)
T ss_pred             eEEEEEEEEcCCCeEEEEEEcCCC---CcCccCCCCEEEEEeCCCCcccccccccCCC----CCeEEEEEEEcCCCcchh
Confidence            588999999999999999998763   2368999999999998766778999999886    689999999975 67899


Q ss_pred             HhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223          137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (285)
Q Consensus       137 ~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (285)
                      ||++ +++||+|.++||+|.. .+..     ..++++|||||+||||++++++++...+...+++|+|++|+.++++|++
T Consensus        76 ~l~~~l~~G~~v~v~gP~G~~-~~~~-----~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~~~r~~~~~~~~~  149 (228)
T cd06209          76 YLRDRAQPGDRLTLTGPLGSF-YLRE-----VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELD  149 (228)
T ss_pred             hHHhccCCCCEEEEECCcccc-eecC-----CCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEEecCCHHHhccHH
Confidence            9998 9999999999999984 4432     3478999999999999999999988766667899999999999999999


Q ss_pred             HHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          216 KFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       216 ~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|++|.+.  ++++++++++++. |.+..|++++.+.+.  .....+..+|+|||+.|++++++.|.++|+
T Consensus       150 ~l~~l~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~--~~~~~~~~v~icGp~~m~~~~~~~l~~~G~  217 (228)
T cd06209         150 RLEALAERLPGFSFRTVVADPDS-WHPRKGYVTDHLEAE--DLNDGDVDVYLCGPPPMVDAVRSWLDEQGI  217 (228)
T ss_pred             HHHHHHHhCCCeEEEEEEcCCCc-cCCCcCCccHHHHHh--hccCCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence            99999864  8888888887554 888889999876653  223346789999999999999999999997

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>PRK08051 fre FMN reductase; Validated

Probab=100.00  E-value=1.9e-38  Score=274.39  Aligned_cols=213  Identities=22%  Similarity=0.344  Sum_probs=181.6

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCC-cc
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG-ST  134 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G-~~  134 (285)
                      +.+++|.+++.++++++.++|+.+++     ..|+||||++|+++.. ..|+|||+|.|..   ++.++|+||..++ ..
T Consensus         2 ~~~~~v~~i~~~~~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~-~~r~ySias~p~~---~~~l~~~v~~~~~~~~   72 (232)
T PRK08051          2 TLSCKVTSVEAITDTVYRVRLVPEAP-----FSFRAGQYLMVVMGEK-DKRPFSIASTPRE---KGFIELHIGASELNLY   72 (232)
T ss_pred             eeEEEEEEEecCCCCeEEEEEecCCC-----CccCCCCEEEEEcCCC-cceeecccCCCCC---CCcEEEEEEEcCCCcc
Confidence            46799999999999999999986543     5899999999999753 4588999999864   7889999999864 34


Q ss_pred             hH-HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 023223          135 AE-VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY  213 (285)
Q Consensus       135 s~-~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~  213 (285)
                      +. .++++++||+|.+.||+|.+| +..    +..++++|||||+||||++++++++++.+...+++|+|++|+.++++|
T Consensus        73 ~~~~~~~l~~G~~v~v~gP~G~~~-~~~----~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~~~  147 (232)
T PRK08051         73 AMAVMERILKDGEIEVDIPHGDAW-LRE----ESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYWGGREEDHLYD  147 (232)
T ss_pred             hHHHHHHcCCCCEEEEEcCCCceE-ccC----CCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHhhh
Confidence            44 456899999999999999954 431    245789999999999999999999987767789999999999999999


Q ss_pred             HHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH-HhcCC
Q 023223          214 QDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC-LEFSA  284 (285)
Q Consensus       214 ~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L-~~~Gv  284 (285)
                      .++|++|.++  +++++.+++++++.|.+..|++++.+.+.  ..+..+..+|+|||++|++.+++.| .++|+
T Consensus       148 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~m~~~v~~~l~~~~G~  219 (232)
T PRK08051        148 LDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQD--FGSLAEYDIYIAGRFEMAKIARELFCRERGA  219 (232)
T ss_pred             hHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhh--ccCcccCEEEEECCHHHHHHHHHHHHHHcCC
Confidence            9999999885  89999999988888999999998877653  2233456899999999999999999 89987

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=3e-38  Score=272.98  Aligned_cols=214  Identities=23%  Similarity=0.412  Sum_probs=183.1

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      +++|.+++.+++++++++|+.+.+.   .+.|+||||+.|++++....|+|||++.|.+   .+.++|+||.++ |.+|.
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~~~G~~s~   75 (232)
T cd06212           2 VGTVVAVEALTHDIRRLRLRLEEPE---PIKFFAGQYVDITVPGTEETRSFSMANTPAD---PGRLEFIIKKYPGGLFSS   75 (232)
T ss_pred             ceEEEEEeecCCCeEEEEEEcCCCC---cCCcCCCCeEEEEcCCCCcccccccCCCCCC---CCEEEEEEEECCCCchhh
Confidence            5789999999999999999976642   3579999999999987677899999999874   589999999986 57899


Q ss_pred             HhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223          137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (285)
Q Consensus       137 ~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (285)
                      +|++ +++||+|.+.||+|.++ +..    ...++++|||||+||||++++++++++.+...+++|+|++|+.++++|.+
T Consensus        76 ~l~~~l~~G~~v~i~gP~G~~~-~~~----~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~  150 (232)
T cd06212          76 FLDDGLAVGDPVTVTGPYGTCT-LRE----SRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLE  150 (232)
T ss_pred             HHhhcCCCCCEEEEEcCcccce-ecC----CCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEeccchHHhccHH
Confidence            9996 99999999999999854 432    24679999999999999999999998776677899999999999999999


Q ss_pred             HHHHHHHC--CCEEEEEeeCCC--CCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          216 KFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       216 ~l~~l~~~--~~~v~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|++|.+.  +++++++++++.  +.|.+..|++++.+.+.  ..+.++..+|+|||++|++.+.+.|.++|+
T Consensus       151 ~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~~CGp~~~~~~v~~~l~~~G~  221 (232)
T cd06212         151 EIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRN--EATLAGCDVYLCGPPPMIDAALPVLEMSGV  221 (232)
T ss_pred             HHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhh--ccCccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            99999874  788888888753  56888889998866552  333356789999999999999999999997

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=100.00  E-value=3e-38  Score=287.72  Aligned_cols=217  Identities=24%  Similarity=0.454  Sum_probs=185.9

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G  132 (285)
                      ..+.+++|++++.++++++.++|+.++..   .+.|+||||+.|++++ +..|+|||+|.|..   .+.++|+||.++ |
T Consensus       100 ~~~~~~~V~~~~~~~~d~~~l~l~~~~~~---~~~~~pGQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~ik~~~~G  172 (339)
T PRK07609        100 VKKLPCRVASLERVAGDVMRLKLRLPATE---RLQYLAGQYIEFILKD-GKRRSYSIANAPHS---GGPLELHIRHMPGG  172 (339)
T ss_pred             ceEEEEEEEEEEcCCCcEEEEEEEcCCCC---CCccCCCCeEEEECCC-CceeeeecCCCCCC---CCEEEEEEEecCCC
Confidence            35668999999999999999999986432   3689999999999985 45689999999874   589999999876 6


Q ss_pred             cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223          133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (285)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~  211 (285)
                      .+|++|+ .+++||+|.++||+|. |.+..    +..++++||||||||||+++|+++++..+...+|+|+|++|+.+++
T Consensus       173 ~~s~~l~~~l~~G~~v~v~gP~G~-~~~~~----~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl  247 (339)
T PRK07609        173 VFTDHVFGALKERDILRIEGPLGT-FFLRE----DSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDL  247 (339)
T ss_pred             ccHHHHHHhccCCCEEEEEcCcee-EEecC----CCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEecCChHHh
Confidence            8899997 6999999999999999 54542    3567899999999999999999999877667789999999999999


Q ss_pred             ccHHHHHHHHHC--CCEEEEEeeC--CCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          212 AYQDKFKEWESS--GVKIVPVLSQ--PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       212 ~~~~~l~~l~~~--~~~v~~~~s~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++++++++|.++  ++++++++++  +++.|.+..|++++.+.++  ..+..+..+|+|||+.|++.+++.|.++|+
T Consensus       248 ~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~--~~~~~~~~vy~CGp~~m~~~~~~~l~~~G~  322 (339)
T PRK07609        248 YLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED--FPDLSGHQVYACGSPVMVYAARDDFVAAGL  322 (339)
T ss_pred             ccHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh--cccccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            999999999864  7999888887  4677889999999887663  333356789999999999999999999986

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=100.00  E-value=6.4e-38  Score=273.55  Aligned_cols=215  Identities=22%  Similarity=0.348  Sum_probs=174.8

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEc--CCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV--DVGKPTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~--~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      .|.+++|.+++++++++++++|+.+.      ..|+||||++|+++  +....|+|||+|.|.    ++.++|+||.++ 
T Consensus         3 ~~~~~~V~~i~~~t~~v~~l~l~~~~------~~~~pGQfv~l~~~~~g~~~~R~ySias~p~----~~~l~~~ik~~~~   72 (248)
T PRK10926          3 DWVTGKVTKVQNWTDALFSLTVHAPV------DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD----NPDLEFYLVTVPE   72 (248)
T ss_pred             ccEEEEEEEEEEcCCCeEEEEEeCCC------CCCCCCCEEEEEEecCCcEEEeeecccCCCC----CCeEEEEEEEeCC
Confidence            68899999999999999999998531      36899999999985  333468999999986    568999999986 


Q ss_pred             CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223          132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~  211 (285)
                      |.+|++|+++++||+|.++||.|..|.++..   ...++++|||||||||||++|++++.+.+...+++|+|++|+.+++
T Consensus        73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~---~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~  149 (248)
T PRK10926         73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEV---PDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAARYAADL  149 (248)
T ss_pred             CCcChHHHhCCCCCEEEEecCCCcceEccCC---CCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeCCcHHHH
Confidence            6899999999999999999987555666521   1347999999999999999999998765666789999999999999


Q ss_pred             ccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhh-----h-cCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK-----K-IFNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       212 ~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~-----~-~~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      +|+++|++|..+   +++++.++++++ .+.+..|++++.+.+..     . ..+.++..+|+|||++|++++++.|.+.
T Consensus       150 ~~~~el~~l~~~~~~~~~v~~~~s~~~-~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~  228 (248)
T PRK10926        150 SYLPLMQELEQRYEGKLRIQTVVSRET-APGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET  228 (248)
T ss_pred             HHHHHHHHHHHhCcCCEEEEEEECCCC-CCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence            999999999874   688888888743 23345788876543211     0 1123467899999999999999999764


Q ss_pred             C
Q 023223          283 S  283 (285)
Q Consensus       283 G  283 (285)
                      +
T Consensus       229 ~  229 (248)
T PRK10926        229 R  229 (248)
T ss_pred             c
Confidence            3

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=6.6e-38  Score=272.84  Aligned_cols=224  Identities=21%  Similarity=0.307  Sum_probs=197.7

Q ss_pred             cCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEE
Q 023223           51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVK  128 (285)
Q Consensus        51 ~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk  128 (285)
                      .++..|.++++++++.++.|+..++|.++.+.+  ...+..||||.++++.++  ..|+||+.|.+..   .+.|+|+||
T Consensus        46 ~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~--~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~---~g~~~l~VK  120 (286)
T KOG0534|consen   46 VDPESYYPFRLIDKTELSHDTSLFRFVLPSADH--VLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD---KGYFDLVVK  120 (286)
T ss_pred             cCCcceEEEEEEEEEeccCCceeEEEecCCchh--ccCcccceEEEEEecCCCcEEEEecCCccCccc---cceEEEEEE
Confidence            355589999999999999999999999985543  378999999999999653  4799999999974   589999999


Q ss_pred             EeC-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccC
Q 023223          129 SVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGAR  206 (285)
Q Consensus       129 ~~~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r  206 (285)
                      .++ |.+|++|++|++||+|+++||.|+ |.+++    +..+++.|||||||||||+++++++++.. +..++.|+|+++
T Consensus       121 ~Y~~G~mS~~l~~LkiGd~ve~rGP~G~-~~~~~----~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~  195 (286)
T KOG0534|consen  121 VYPKGKMSQHLDSLKIGDTVEFRGPIGE-FKYDP----QKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANK  195 (286)
T ss_pred             eccCCcccHHHhcCCCCCEEEEecCccc-eEecC----CCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecC
Confidence            998 799999999999999999999999 77763    35899999999999999999999999654 478999999999


Q ss_pred             CccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCC-CcEEEEECchhHHH-HHHHHHHh
Q 023223          207 NLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAE-VCYCFCLE  281 (285)
Q Consensus       207 ~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~vyiCGp~~m~~-~~~~~L~~  281 (285)
                      ++++++++++|+++..+   .|++..++++++..|.+..|++...+..+......+ ++.++||||++|++ .++..|.+
T Consensus       196 te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le~  275 (286)
T KOG0534|consen  196 TEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQGNLEK  275 (286)
T ss_pred             CccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHHh
Confidence            99999999999999985   789999999999999999999999988865444444 58999999999997 57888888


Q ss_pred             cCC
Q 023223          282 FSA  284 (285)
Q Consensus       282 ~Gv  284 (285)
                      +|.
T Consensus       276 Lg~  278 (286)
T KOG0534|consen  276 LGY  278 (286)
T ss_pred             cCC
Confidence            875

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=100.00  E-value=2.4e-38  Score=281.47  Aligned_cols=218  Identities=23%  Similarity=0.418  Sum_probs=182.4

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-----------------------------C--
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----------------------------G--  103 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-----------------------------~--  103 (285)
                      .+..++|++++.+++++++++|+.+++.   ...|+||||+.|++++.                             +  
T Consensus         8 ~~~~~~v~~~~~~~~d~~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (283)
T cd06188           8 KKWECTVISNDNVATFIKELVLKLPSGE---EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEP   84 (283)
T ss_pred             ceEEEEEEEcccccchhhheEEecCCCc---eeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCc
Confidence            4557999999999999999999987542   24799999999999753                             1  


Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEE
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI  173 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vl  173 (285)
                      ..|+|||+|.|..   ++.++|+||..          .|.+|++|+++++||+|.++||+|. |.+.     +..++++|
T Consensus        85 ~~R~ySias~p~~---~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~l~-----~~~~~~vl  155 (283)
T cd06188          85 VSRAYSLANYPAE---EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGE-FFIK-----DTDREMVF  155 (283)
T ss_pred             cccccCcCCCCCC---CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECcccc-cccc-----CCCCcEEE
Confidence            2489999999864   68999999972          3678999999999999999999999 5453     24579999


Q ss_pred             EEcCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCC--CCCCccccccchH
Q 023223          174 FATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAA  248 (285)
Q Consensus       174 iAgGtGIaP~~sil~~~~~~~~-~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~--~~~~~~~g~v~~~  248 (285)
                      ||||||||||++|+++++..+. ..+++|+|++|+.++++|.++|++|..+  +++++++++++.  +.|.+..|++++.
T Consensus       156 IAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~  235 (283)
T cd06188         156 IGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQV  235 (283)
T ss_pred             EEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHH
Confidence            9999999999999999876543 4789999999999999999999999874  788888888754  6788899999988


Q ss_pred             HHHhhhc--CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          249 FSRAKKI--FNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       249 ~~~~~~~--~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +.+....  .+..+..+|+|||+.|++++.+.|.++|+
T Consensus       236 ~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv  273 (283)
T cd06188         236 LLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGV  273 (283)
T ss_pred             HHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            7764211  12346789999999999999999999997

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=1.6e-37  Score=268.76  Aligned_cols=217  Identities=25%  Similarity=0.415  Sum_probs=184.9

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-CC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-VG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      |.+++|++++.+++++++++|+.++..   ...|+||||+.|+++. .+  ..|+|||++.|..   .+.++|+||..+ 
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~---~~~l~l~v~~~~~   74 (235)
T cd06217           1 WRVLRVTEIIQETPTVKTFRLAVPDGV---PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ---RGRVELTVKRVPG   74 (235)
T ss_pred             CceEEEEEEEecCCCeEEEEEECCCCC---cCCcCCcCeEEEEEecCCCceeeeeecccCCCCC---CCeEEEEEEEcCC
Confidence            788999999999999999999987642   2579999999999972 22  3489999999864   679999999986 


Q ss_pred             CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223          132 GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (285)
Q Consensus       132 G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~  210 (285)
                      |.+|.+|++ +++||.|.+.||+|. |.+..    ...++++|||||+||||++++++++++.+...++.++|++|+.++
T Consensus        75 G~~s~~l~~~l~~Gd~v~i~gP~G~-~~~~~----~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~~~~  149 (235)
T cd06217          75 GEVSPYLHDEVKVGDLLEVRGPIGT-FTWNP----LHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAED  149 (235)
T ss_pred             CcchHHHHhcCCCCCEEEEeCCcee-eEeCC----CCCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCCHHH
Confidence            578999985 899999999999998 66642    246789999999999999999999987766788999999999999


Q ss_pred             cccHHHHHHHHHC--CCEEEEEeeCC-CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          211 MAYQDKFKEWESS--GVKIVPVLSQP-DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       211 ~~~~~~l~~l~~~--~~~v~~~~s~~-~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|+++|.++..+  +++++.+++++ .+.|.+..|++++...+.. ..+.++..+|+|||++|++++.+.|.++|+
T Consensus       150 ~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~v~icGp~~m~~~v~~~l~~~Gv  225 (235)
T cd06217         150 VIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAEL-VPPLAGRRVYVCGPPAFVEAATRLLLELGV  225 (235)
T ss_pred             hhHHHHHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhh-CCCccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            9999999999874  78888888876 5678888899998765532 223456799999999999999999999997

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=100.00  E-value=2.8e-37  Score=269.33  Aligned_cols=218  Identities=22%  Similarity=0.334  Sum_probs=185.4

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC----CeeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----GKPTFLAIASPPSFASASGAFEFLVKS  129 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~----~~~~~~si~s~p~~~~~~~~l~l~Vk~  129 (285)
                      ..|+.++|.+++++++++++++|+.++...  ...|+||||+.|.++..    ...|+|||++.|.    ++.++|+||.
T Consensus         4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~l~~~ik~   77 (247)
T cd06184           4 RGFRPFVVARKVAESEDITSFYLEPADGGP--LPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN----GDYYRISVKR   77 (247)
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC----CCeEEEEEEE
Confidence            378899999999999999999999765422  15799999999999643    3578999999986    5699999998


Q ss_pred             eC-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 023223          130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (285)
Q Consensus       130 ~~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~  207 (285)
                      .+ |.+|+||++ +++||+|.|.||+|. |.++.    ...++++||||||||||++++++++.+.+...++.|+|++|+
T Consensus        78 ~~~G~~s~~l~~~~~~Gd~v~i~gP~G~-~~~~~----~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~i~l~~~~r~  152 (247)
T cd06184          78 EPGGLVSNYLHDNVKVGDVLEVSAPAGD-FVLDE----ASDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARN  152 (247)
T ss_pred             cCCCcchHHHHhcCCCCCEEEEEcCCCc-eECCC----CCCCcEEEEeccccHhHHHHHHHHHHhcCCCCcEEEEEEcCc
Confidence            76 689999997 999999999999998 76652    246789999999999999999999987666788999999999


Q ss_pred             ccccccHHHHHHHHHC--CCEEEEEeeCCCCCC----CccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh
Q 023223          208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE  281 (285)
Q Consensus       208 ~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~----~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~  281 (285)
                      .++++|+++|++|..+  +++++++++++.+.|    .+..|+++.....+  .....+..+|+|||++|++++++.|.+
T Consensus       153 ~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~v~icGp~~m~~~v~~~l~~  230 (247)
T cd06184         153 SAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRE--LLLPADADFYLCGPVPFMQAVREGLKA  230 (247)
T ss_pred             hhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHhh--ccCCCCCEEEEECCHHHHHHHHHHHHH
Confidence            9999999999999875  899999998875543    56788988765543  223457899999999999999999999


Q ss_pred             cCC
Q 023223          282 FSA  284 (285)
Q Consensus       282 ~Gv  284 (285)
                      +|+
T Consensus       231 ~G~  233 (247)
T cd06184         231 LGV  233 (247)
T ss_pred             cCC
Confidence            987

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=100.00  E-value=1.2e-37  Score=269.17  Aligned_cols=209  Identities=21%  Similarity=0.391  Sum_probs=177.2

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhh
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC  139 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~  139 (285)
                      |++++.+++++++++|+.+++     ..|+||||+.|++++....|+|||++.|..   .+.++|+||..+ |.+|.+|+
T Consensus         1 ~~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~~~~~vk~~~~G~~s~~l~   72 (232)
T cd06190           1 LVDVRELTHDVAEFRFALDGP-----ADFLPGQYALLALPGVEGARAYSMANLANA---SGEWEFIIKRKPGGAASNALF   72 (232)
T ss_pred             CCceEEcCCCEEEEEEEcCCc-----cccCCCCEEEEECCCCCcccCccCCcCCCC---CCEEEEEEEEcCCCcchHHHh
Confidence            467899999999999997653     479999999999987656789999999864   589999999875 67899998


Q ss_pred             C-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc--CCCCcEEEEEccCCccccccHHH
Q 023223          140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS--KERSDVRLYYGARNLKRMAYQDK  216 (285)
Q Consensus       140 ~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~--~~~~~v~l~~~~r~~~~~~~~~~  216 (285)
                      + +++||+|.++||+|.++ +..    +..++++|||||+||||++++++++.+.  .+..+++|+|++|+.++++|+++
T Consensus        73 ~~~~~g~~v~v~gP~G~~~-~~~----~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~e  147 (232)
T cd06190          73 DNLEPGDELELDGPYGLAY-LRP----DEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDE  147 (232)
T ss_pred             hcCCCCCEEEEECCcccce-ecC----CCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHH
Confidence            6 79999999999999955 321    3467899999999999999999999865  45689999999999999999999


Q ss_pred             HHHHHHC--CCEEEEEeeCCCC----CCCccccccchHHHHhhhcCC-CCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          217 FKEWESS--GVKIVPVLSQPDG----NWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       217 l~~l~~~--~~~v~~~~s~~~~----~~~~~~g~v~~~~~~~~~~~~-~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |++|.+.  +++++++++++..    .|.+..|++++.+.+.  ..+ ..+..||+|||++|++.+.+.|.+.|+
T Consensus       148 l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~  220 (232)
T cd06190         148 LSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEAT--LGDRLAEFEFYFAGPPPMVDAVQRMLMIEGV  220 (232)
T ss_pred             HHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhh--ccCCccccEEEEECCHHHHHHHHHHHHHhCC
Confidence            9999984  7888888876543    4888899999876663  222 456899999999999999999998875

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=100.00  E-value=2.9e-37  Score=276.15  Aligned_cols=231  Identities=19%  Similarity=0.249  Sum_probs=186.8

Q ss_pred             hhccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCCCCC
Q 023223           48 AVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASG  121 (285)
Q Consensus        48 ~~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~~~~  121 (285)
                      ++.+++..|..++|++++.++++++.++|+.+++.  ....|+||||+.|+++..      ...|+||+++.|.+   ++
T Consensus        25 ~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~--~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~---~~   99 (300)
T PTZ00319         25 PVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPT--QRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE---KG   99 (300)
T ss_pred             ccccCcCceEEEEEEEEEEcCCCceEEEEECCCCc--ccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc---CC
Confidence            55568889999999999999999999999976542  236799999999999743      23688999998864   78


Q ss_pred             eEEEEEEEe---------C-CcchHHhhCCCCCCEEEEEeecCCCcccCCCC---C--------CCCCCeEEEEEcCcch
Q 023223          122 AFEFLVKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQ---P--------PDEYPTVLIFATGSGI  180 (285)
Q Consensus       122 ~l~l~Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~---~--------~~~~~~~vliAgGtGI  180 (285)
                      .++|+||.+         + |.+|++|+++++||+|.++||+|. |.+....   .        ....++++|||||+||
T Consensus       100 ~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGI  178 (300)
T PTZ00319        100 YVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGK-FEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGI  178 (300)
T ss_pred             EEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEcccee-eEecCCcceeeccccccccccccceEEEEecCccc
Confidence            999999987         3 799999999999999999999998 5443100   0        0123589999999999


Q ss_pred             hHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHHHHHC-CCEEEEEeeC-CCCCCCccccccchHHHHhhhc-C
Q 023223          181 SPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKEWESS-GVKIVPVLSQ-PDGNWSGETGYVQAAFSRAKKI-F  256 (285)
Q Consensus       181 aP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~v~~~~s~-~~~~~~~~~g~v~~~~~~~~~~-~  256 (285)
                      ||+++|++++++.. +..++.|+|++|+.++++|.++|+++... +++++.++++ +.+.|.+..|++++.+.++... .
T Consensus       179 aP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~  258 (300)
T PTZ00319        179 TPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVP  258 (300)
T ss_pred             CHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHhhCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCc
Confidence            99999999987653 35689999999999999999999987653 7898888886 4567888899999876654211 1


Q ss_pred             C-----CCCcEEEEECchhHHH-HHHHHHHhcCC
Q 023223          257 N-----PQGTGVVLCGQKQMAE-VCYCFCLEFSA  284 (285)
Q Consensus       257 ~-----~~~~~vyiCGp~~m~~-~~~~~L~~~Gv  284 (285)
                      .     .++..+|+|||++|++ .+++.|+++|+
T Consensus       259 ~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~  292 (300)
T PTZ00319        259 DPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGY  292 (300)
T ss_pred             cccccccCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence            1     1357899999999999 56889999997

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=100.00  E-value=2.4e-37  Score=265.74  Aligned_cols=209  Identities=26%  Similarity=0.451  Sum_probs=180.0

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC-eeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHh
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVL  138 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~-~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L  138 (285)
                      |++++++++++++++|+.++.     ..|+||||+.|++++.. ..|+|||+|.|.+   .+.++|+||..+ |.+|++|
T Consensus         1 v~~~~~~~~~~~~~~l~~~~~-----~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~---~~~~~~~i~~~~~G~~s~~l   72 (224)
T cd06187           1 VVSVERLTHDIAVVRLQLDQP-----LPFWAGQYVNVTVPGRPRTWRAYSPANPPNE---DGEIEFHVRAVPGGRVSNAL   72 (224)
T ss_pred             CeeeeecCCCEEEEEEEeCCC-----CCcCCCceEEEEcCCCCCcceeccccCCCCC---CCEEEEEEEeCCCCcchHHH
Confidence            568899999999999997654     57999999999998654 5689999999874   589999999974 7899999


Q ss_pred             hC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223          139 CG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (285)
Q Consensus       139 ~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (285)
                      ++ +++||.|.+.||+|. |.+..    +..++++|||||+||||+++|++++...+...+++++|++|+.++++|.++|
T Consensus        73 ~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~~~~~~l  147 (224)
T cd06187          73 HDELKVGDRVRLSGPYGT-FYLRR----DHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGL  147 (224)
T ss_pred             hhcCccCCEEEEeCCccc-eEecC----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhhcChHHH
Confidence            97 999999999999998 54432    2367899999999999999999999876666799999999999999999999


Q ss_pred             HHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          218 KEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       218 ~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|..+  +++++++++++++.|.+..|++++.+.+.  ..+.++..+|+|||++|++.+++.|+++|+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~vcGp~~~~~~v~~~l~~~G~  214 (224)
T cd06187         148 LALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRD--GPDWADHDIYICGPPAMVDATVDALLARGA  214 (224)
T ss_pred             HHHHHhCCCeEEEEEeCCCCCccCCCcccHHHHHHHh--ccccccCEEEEECCHHHHHHHHHHHHHcCC
Confidence            999874  78888888887667888899999887663  223356789999999999999999999987

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=3.9e-37  Score=265.23  Aligned_cols=209  Identities=21%  Similarity=0.408  Sum_probs=178.9

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      +++|++++.+++++++++|+.++.     ..|+||||+.|++++....|+|||++.|..   .+.++|+||..+ |.+|+
T Consensus         2 ~~~v~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~---~~~l~~~vk~~~~G~~s~   73 (227)
T cd06213           2 RGTIVAQERLTHDIVRLTVQLDRP-----IAYKAGQYAELTLPGLPAARSYSFANAPQG---DGQLSFHIRKVPGGAFSG   73 (227)
T ss_pred             eEEEEEEeecCCCEEEEEEecCCC-----CCcCCCCEEEEEeCCCCcccccccCCCCCC---CCEEEEEEEECCCCcchH
Confidence            578999999999999999986532     579999999999986556789999999864   689999999876 67899


Q ss_pred             Hhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223          137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (285)
Q Consensus       137 ~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (285)
                      +|. .+++||+|.++||+|. |.+..     ..++++|||||+||||++++++++.+.+...++.++|++|+.++++|.+
T Consensus        74 ~l~~~l~~G~~v~i~gP~G~-~~~~~-----~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~~~~~~~~~  147 (227)
T cd06213          74 WLFGADRTGERLTVRGPFGD-FWLRP-----GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALD  147 (227)
T ss_pred             HHHhcCCCCCEEEEeCCCcc-eEeCC-----CCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhccHH
Confidence            985 5999999999999998 55541     3478999999999999999999998766677899999999999999999


Q ss_pred             HHHHHHHC---CCEEEEEeeCCC--CCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          216 KFKEWESS---GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       216 ~l~~l~~~---~~~v~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|+++..+   +++++.++++..  ..|.+..|++++.+.+.  .  ..+..+|+|||++|++.+++.|.++|+
T Consensus       148 ~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~--~--~~~~~v~~CGp~~~~~~~~~~l~~~G~  217 (227)
T cd06213         148 EIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEV--L--LAATEAYLCGPPAMIDAAIAVLRALGI  217 (227)
T ss_pred             HHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhh--c--cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            99999863   788888887653  45788889998876653  2  356789999999999999999999987

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=100.00  E-value=4.1e-37  Score=265.69  Aligned_cols=212  Identities=19%  Similarity=0.288  Sum_probs=179.2

Q ss_pred             EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      +|++++.+++++++++|+.++..   .+.|+||||+.|+++..  ...|+|||++.+.    .+.++|.||.++ |.+|+
T Consensus         2 ~v~~i~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~l~~~v~~~~~G~~s~   74 (231)
T cd06191           2 RVAEVRSETPDAVTIVFAVPGPL---QYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA----PDEISITVKRVPGGRVSN   74 (231)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCC---CCCCCCCCeEEEEEecCCeEEeeeeeccCCCC----CCeEEEEEEECCCCccch
Confidence            68999999999999999976542   25799999999999643  3468999999886    678999999986 57899


Q ss_pred             Hhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223          137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (285)
Q Consensus       137 ~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (285)
                      ||+ ++++||+|.++||+|+ |.++.    ...++++||||||||||+++|++++++.....++.++|++|+.++++|++
T Consensus        75 ~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~  149 (231)
T cd06191          75 YLREHIQPGMTVEVMGPQGH-FVYQP----QPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQ  149 (231)
T ss_pred             HHHhcCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHHH
Confidence            998 6999999999999998 76652    24578999999999999999999998766678999999999999999999


Q ss_pred             HHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          216 KFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       216 ~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|++|.+.  +++++++++++  .+.|.+..|++.+.+.+. ...+..+..+|+|||+.|++.+++.|.++|+
T Consensus       150 el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~vyicGp~~mv~~~~~~l~~~G~  221 (231)
T cd06191         150 ELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAA-LIPDRLEREAFICGPAGMMDAVETALKELGM  221 (231)
T ss_pred             HHHHHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHH-hCccccCCeEEEECCHHHHHHHHHHHHHcCC
Confidence            99999874  89999999864  356777778887766553 2223345789999999999999999999987

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=100.00  E-value=3.4e-37  Score=269.79  Aligned_cols=212  Identities=26%  Similarity=0.534  Sum_probs=181.4

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhhC
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG  140 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~~  140 (285)
                      |.+++.+++++..++|+++.+.. ....|+||||+.|+++..+. ++|||++.|..   ++.++|+||.. |.+|++|++
T Consensus         1 v~~i~~~t~~v~~~~l~~~~~~~-~~~~~~pGQ~i~l~~~~~~~-~pySi~s~~~~---~~~l~~~Ik~~-G~~S~~L~~   74 (253)
T cd06221           1 IVEVVDETEDIKTFTLRLEDDDE-ELFTFKPGQFVMLSLPGVGE-APISISSDPTR---RGPLELTIRRV-GRVTEALHE   74 (253)
T ss_pred             CceEEeccCCceEEEEEeCCCcc-ccCCcCCCCEEEEEcCCCCc-cceEecCCCCC---CCeEEEEEEeC-ChhhHHHHc
Confidence            56889999999999999866421 12689999999999986555 78999999964   68999999987 889999999


Q ss_pred             CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHH
Q 023223          141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKE  219 (285)
Q Consensus       141 l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~  219 (285)
                      +++|++|.++||+|++|.++.    ...+++||||||+||||+++|++++++.. ...+++|+|++|+.++++|+++|++
T Consensus        75 l~~G~~v~i~gP~G~~f~~~~----~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~  150 (253)
T cd06221          75 LKPGDTVGLRGPFGNGFPVEE----MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKE  150 (253)
T ss_pred             CCCCCEEEEECCcCCCccccc----ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHH
Confidence            999999999999999776531    14689999999999999999999998653 4578999999999999999999999


Q ss_pred             HHHC-CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          220 WESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       220 l~~~-~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |..+ +++++++++++.+.|.+..|++++.+.+.  .....+..+|+|||+.|++.+++.|.+.|+
T Consensus       151 l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~mv~~~~~~L~~~Gv  214 (253)
T cd06221         151 WAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPEL--TLDPDNTVAIVCGPPIMMRFVAKELLKLGV  214 (253)
T ss_pred             HHhcCCeEEEEEeCCCCCCccCCccccchhHHhc--CCCcCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence            9985 78898889988888888889999876653  233356789999999999999999999987

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=7.7e-37  Score=263.79  Aligned_cols=213  Identities=21%  Similarity=0.330  Sum_probs=181.3

Q ss_pred             EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      +|++++.+++++++++|+.++..   .+.|+||||+.|+++..+  ..|+|||++.|..   .+.++|+||..+ |.+|.
T Consensus         2 ~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~s~   75 (231)
T cd06215           2 RCVKIIQETPDVKTFRFAAPDGS---LFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR---PDSLSITVKRVPGGLVSN   75 (231)
T ss_pred             eEEEEEEcCCCeEEEEEECCCCC---cCCcCCCCeEEEEEecCCCeEEEeeecccCCCC---CCcEEEEEEEcCCCcchH
Confidence            68999999999999999987542   267999999999997543  3689999999864   677999999886 68999


Q ss_pred             Hhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 023223          137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD  215 (285)
Q Consensus       137 ~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~  215 (285)
                      ||+ ++++||+|.++||+|. |.+..    ...++++|||||+||||+++|++++++.+...++.++|++|+.++++|.+
T Consensus        76 ~l~~~~~~G~~v~i~gP~G~-f~~~~----~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~  150 (231)
T cd06215          76 WLHDNLKVGDELWASGPAGE-FTLID----HPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFAD  150 (231)
T ss_pred             HHHhcCCCCCEEEEEcCcce-eEeCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHHH
Confidence            997 6999999999999998 76642    23689999999999999999999998766678899999999999999999


Q ss_pred             HHHHHHH--CCCEEEEEeeCCCCC-CCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          216 KFKEWES--SGVKIVPVLSQPDGN-WSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       216 ~l~~l~~--~~~~v~~~~s~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|++|.+  .+++++++++++++. |.+..|++++...+.. ..+..+..+|+|||+.|++.+++.|.++|+
T Consensus       151 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~v~icGp~~m~~~~~~~l~~~gv  221 (231)
T cd06215         151 ELEELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLALL-VPDLKERTVFVCGPAGFMKAVKSLLAELGF  221 (231)
T ss_pred             HHHHHHHHCCCeEEEEEEccCCCCcccccCCcCCHHHHHHh-cCCccCCeEEEECCHHHHHHHHHHHHHcCC
Confidence            9999987  478998888886664 8888999987655532 233345789999999999999999999987

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=5.8e-37  Score=275.25  Aligned_cols=220  Identities=21%  Similarity=0.275  Sum_probs=176.4

Q ss_pred             CCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--------eeeeeeecCCCCCCC-C
Q 023223           54 TVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--------KPTFLAIASPPSFAS-A  119 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--------~~~~~si~s~p~~~~-~  119 (285)
                      ..+..++|++++.++     +++++++|+.+.+     +.|.||||+.|.+++..        ..|+|||+|.|.... +
T Consensus        22 ~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~-----~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~   96 (307)
T PLN03116         22 KAPYTATIVSVERIVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFD   96 (307)
T ss_pred             CCCEEEEEEeeEEcccCCCCCceEEEEEecCCC-----CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCC
Confidence            344589999999999     8999999997643     78999999999876421        368999999985311 1


Q ss_pred             CCeEEEEEEEe--------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHH
Q 023223          120 SGAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRS  185 (285)
Q Consensus       120 ~~~l~l~Vk~~--------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~s  185 (285)
                      ...++|+||+.              .|.+|+||+++++||+|.++||+|.+|....   .+..++++|||||||||||++
T Consensus        97 ~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~---~~~~~~~vlIAgGtGIaP~~s  173 (307)
T PLN03116         97 GKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPE---EDPNATHIMVATGTGIAPFRG  173 (307)
T ss_pred             CCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCC---CCCCCcEEEEecCccHHHHHH
Confidence            23799999986              3789999999999999999999999554321   124578999999999999999


Q ss_pred             HHHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhc--
Q 023223          186 LIESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI--  255 (285)
Q Consensus       186 il~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~--  255 (285)
                      |+++++..+.     ..+++|+|++|+.++++|.++|++|..+   +++++++++++.+.|.+..|++++.+.+....  
T Consensus       174 ml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~  253 (307)
T PLN03116        174 FLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIF  253 (307)
T ss_pred             HHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHH
Confidence            9998875331     3679999999999999999999999874   68999999998888888889998866553211  


Q ss_pred             C-CCCCcEEEEECchhHHHHHHHHHHh
Q 023223          256 F-NPQGTGVVLCGQKQMAEVCYCFCLE  281 (285)
Q Consensus       256 ~-~~~~~~vyiCGp~~m~~~~~~~L~~  281 (285)
                      . ..++..+|+|||++|++.+.+.|.+
T Consensus       254 ~~~~~~~~vYiCGp~~mv~~v~~~L~~  280 (307)
T PLN03116        254 KLLDNGAHIYFCGLKGMMPGIQDTLKR  280 (307)
T ss_pred             hhhcCCcEEEEeCCHHHHHHHHHHHHH
Confidence            1 1246789999999999988777665

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=100.00  E-value=3.8e-37  Score=267.59  Aligned_cols=211  Identities=24%  Similarity=0.357  Sum_probs=178.4

Q ss_pred             EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-C--eeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-G--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (285)
Q Consensus        60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s  135 (285)
                      +|++++.+++++++++|+.++.     ..|+||||+.|+++.. +  ..|+|||++.+.    ++.++|+||.++ |.+|
T Consensus         1 ~v~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~----~~~i~~~i~~~~~G~~s   71 (241)
T cd06195           1 TVLKRRDWTDDLFSFRVTRDIP-----FRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY----EENLEFYIILVPDGPLT   71 (241)
T ss_pred             CeEEEEEcCCCEEEEEEcCCCC-----CccCCCCeEEEeccCCCCCeeeecccccCCCC----CCeEEEEEEEecCCCCc
Confidence            4789999999999999986542     6799999999999854 3  468999999986    689999999875 6899


Q ss_pred             HHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223          136 EVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (285)
Q Consensus       136 ~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (285)
                      +||+++++||.|.+. ||+|+ |.++..   ...++++||||||||||+++++++++...+..++.|+|++|+.++++|+
T Consensus        72 ~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~d~~~~  147 (241)
T cd06195          72 PRLFKLKPGDTIYVGKKPTGF-LTLDEV---PPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQ  147 (241)
T ss_pred             hHHhcCCCCCEEEECcCCCCc-eeecCC---CCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEccCCHHHhhhH
Confidence            999999999999999 99998 766531   1357999999999999999999999866667899999999999999999


Q ss_pred             HHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhh---hc---CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          215 DKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---KI---FNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       215 ~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~---~~---~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|++|..+   +++++.+++++++.| +..|++++.+....   ..   ...++..+|+|||++|++.+++.|.++|+
T Consensus       148 ~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~  225 (241)
T cd06195         148 DEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGF  225 (241)
T ss_pred             HHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCC
Confidence            999999875   789998999887777 67788887654210   01   12256789999999999999999999997

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=100.00  E-value=9.2e-37  Score=283.71  Aligned_cols=218  Identities=20%  Similarity=0.330  Sum_probs=182.1

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--Ce--eeeeeecCCCCCCCCCCeEEEEEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GK--PTFLAIASPPSFASASGAFEFLVKS  129 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~--~~~~si~s~p~~~~~~~~l~l~Vk~  129 (285)
                      ..|++++|++++.++++++.++|+.+++..  ...|+||||+.|+++..  ..  +|+|||++.|.    ++.++|+||.
T Consensus       152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~----~~~l~~~Vk~  225 (399)
T PRK13289        152 RGWRDFRVVKKVPESEVITSFYLEPVDGGP--VADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN----GKYYRISVKR  225 (399)
T ss_pred             CCcEEEEEEEEEECCCCEEEEEEEcCCCCc--CCCCCCCCeEEEEEecCCccccceeEEEeeeCCC----CCeEEEEEEE
Confidence            567889999999999999999999765322  25799999999999633  22  49999999986    6799999999


Q ss_pred             eC-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 023223          130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (285)
Q Consensus       130 ~~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~  207 (285)
                      .+ |.+|.+|++ +++||+|.++||+|+ |.++.    ...++++||||||||||+++|+++++..+...+++|+|++|+
T Consensus       226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~  300 (399)
T PRK13289        226 EAGGKVSNYLHDHVNVGDVLELAAPAGD-FFLDV----ASDTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARN  300 (399)
T ss_pred             CCCCeehHHHhhcCCCCCEEEEEcCccc-cccCC----CCCCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence            86 689999986 999999999999998 76753    246789999999999999999999987667789999999999


Q ss_pred             ccccccHHHHHHHHHC--CCEEEEEeeCCCC-CCC----ccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHH
Q 023223          208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDG-NWS----GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL  280 (285)
Q Consensus       208 ~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~-~~~----~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~  280 (285)
                      .++++|+++|++|...  +++++.+++++.. .|.    +..|+++......  .....+..+|+|||++|++.+.+.|.
T Consensus       301 ~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~--~~~~~~~~vyiCGp~~m~~~v~~~L~  378 (399)
T PRK13289        301 GGVHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEA--WLPDPDADFYFCGPVPFMQFVAKQLL  378 (399)
T ss_pred             hhhchHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHh--hCCCCCCEEEEECCHHHHHHHHHHHH
Confidence            9999999999999875  7899988887643 222    2358888755542  22224678999999999999999999


Q ss_pred             hcCC
Q 023223          281 EFSA  284 (285)
Q Consensus       281 ~~Gv  284 (285)
                      +.|+
T Consensus       379 ~~Gv  382 (399)
T PRK13289        379 ELGV  382 (399)
T ss_pred             HcCC
Confidence            9997

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=100.00  E-value=6.5e-37  Score=269.32  Aligned_cols=208  Identities=17%  Similarity=0.412  Sum_probs=177.1

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchH
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAE  136 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~  136 (285)
                      .+++|++++++++++++++|+.+       ..|+||||+.|++++.+. ++|||++.+     ++.++|+||.. |.+|+
T Consensus         8 ~~~~v~~i~~~t~~~~~~~l~~~-------~~~~pGQfi~l~~~~~~~-~pySi~~~~-----~~~~~~~Ik~~-G~~S~   73 (263)
T PRK08221          8 AAYKILDITKHTDIEYTFRVEVD-------GPVKPGQFFEVSLPKVGE-APISVSDYG-----DGYIDLTIRRV-GKVTD   73 (263)
T ss_pred             ccEEEEEEeccCCcEEEEEecCC-------CCCCCCceEEEEeCCCCc-ceeeccCCC-----CCEEEEEEEeC-Cchhh
Confidence            46999999999999999999842       368999999999986554 789998875     67899999988 99999


Q ss_pred             HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccHH
Q 023223          137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQD  215 (285)
Q Consensus       137 ~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-~~~v~l~~~~r~~~~~~~~~  215 (285)
                      +|+++++||+|.++||+|++|.++.    ...++++||||||||||++++++++++... ..+++|+|++|+.++++|++
T Consensus        74 ~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~~  149 (263)
T PRK08221         74 EIFNLKEGDKLFLRGPYGNGFPVDT----YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFKE  149 (263)
T ss_pred             HHHhCCCCCEEEEECCCCCCcccCc----cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHH
Confidence            9999999999999999998776652    245799999999999999999999876543 46899999999999999999


Q ss_pred             HHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          216 KFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       216 ~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|++|... ++++++++++++.|.+..|++++.+.+. ...+..+..+|+|||++|++.+++.|.++|+
T Consensus       150 el~~~~~~-~~~~~~~~~~~~~~~~~~G~v~~~l~~~-~~~~~~~~~vylCGp~~mv~~~~~~L~~~Gv  216 (263)
T PRK08221        150 DLKRWREK-INLILTLDEGEEGYRGNVGLVTKYIPEL-TLKDIDNMQVIVVGPPIMMKFTVLEFLKRGI  216 (263)
T ss_pred             HHHHHhhc-CcEEEEecCCCCCCccCccccChhhHhc-cCCCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            99999874 4566667777788988999999866552 1223356789999999999999999999987

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=6.7e-37  Score=278.56  Aligned_cols=221  Identities=22%  Similarity=0.329  Sum_probs=178.8

Q ss_pred             CCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCC-CCC
Q 023223           53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SAS  120 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~-~~~  120 (285)
                      ++....++|++++.+..     ++++++|+.+.+     +.|.||||+.|.+++.      ..+|+|||+|.+..+ .++
T Consensus        87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~-----~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~  161 (367)
T PLN03115         87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGE-----IPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDS  161 (367)
T ss_pred             cCCCeEEEEEeecccccCCCCCceEEEEEcCCCC-----CCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCC
Confidence            33445678998888876     899999986543     6899999999998632      246899999998421 125


Q ss_pred             CeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHh
Q 023223          121 GAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG  190 (285)
Q Consensus       121 ~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~  190 (285)
                      +.++|+||+.          .|.+|+||+++++||+|.+.||+|.+|.+..    +..++++|||||||||||++++++.
T Consensus       162 ~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~----~~~~~iImIAgGTGIAP~rs~L~~~  237 (367)
T PLN03115        162 KTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPK----DPNATIIMLATGTGIAPFRSFLWKM  237 (367)
T ss_pred             CEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCc----CCCCCEEEEeCCeeHHHHHHHHHHH
Confidence            7899999975          3789999999999999999999999665431    3456899999999999999999987


Q ss_pred             hccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCC
Q 023223          191 FSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNP  258 (285)
Q Consensus       191 ~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~  258 (285)
                      +....     ..+++||||+|+.++++|+++|++|..+   +|+++.++|++++.|.|..||+++.+.+...    ....
T Consensus       238 ~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~  317 (367)
T PLN03115        238 FFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKK  317 (367)
T ss_pred             HhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhccc
Confidence            53221     3679999999999999999999999874   7999999999988999999999997765321    1223


Q ss_pred             CCcEEEEECchhHHHHHHHHHHhc
Q 023223          259 QGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       259 ~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      .+..+|+|||++|++.+.++|.+.
T Consensus       318 ~~~~vYiCGp~~M~~~V~~~l~~l  341 (367)
T PLN03115        318 DNTYVYMCGLKGMEKGIDDIMVSL  341 (367)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHH
Confidence            568999999999999998888764

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=100.00  E-value=9.2e-37  Score=277.06  Aligned_cols=211  Identities=18%  Similarity=0.328  Sum_probs=175.9

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s  135 (285)
                      .++|.+++.++++++.++|+.++.     +.|+||||+.|++++. ...|+|||+|.|..   ++.++|+||+++ |.+|
T Consensus        11 ~~~V~~i~~~t~~v~~l~l~~~~~-----~~f~pGQfv~l~~~~~~~~~R~ySias~p~~---~~~l~i~Vk~~~~G~~S   82 (332)
T PRK10684         11 RMQVHSIVQETPDVWTISLICHDF-----YPYRAGQYALVSIRNSAETLRAYTLSSTPGV---SEFITLTVRRIDDGVGS   82 (332)
T ss_pred             eEEEEEEEccCCCeEEEEEcCCCC-----CCcCCCCEEEEEecCCCEeeeeecccCCCCC---CCcEEEEEEEcCCCcch
Confidence            789999999999999999985432     6799999999999854 34689999999864   678999999987 5789


Q ss_pred             HHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223          136 EVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (285)
Q Consensus       136 ~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (285)
                      +||+ ++++||+|.++||+|+ |.++.    ...++++|||||+||||+++|+++++..+...+++|+|++|+.++++|+
T Consensus        83 ~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r~~~~~~~~  157 (332)
T PRK10684         83 QWLTRDVKRGDYLWLSDAMGE-FTCDD----KAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVRTPQDVIFA  157 (332)
T ss_pred             hHHHhcCCCCCEEEEeCCccc-cccCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCCChHHhhhH
Confidence            9997 6999999999999999 66642    2457899999999999999999998776667899999999999999999


Q ss_pred             HHHHHHHHC--CCEEEEEeeCCCCCCCc-cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          215 DKFKEWESS--GVKIVPVLSQPDGNWSG-ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~-~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|++|..+  +++++.+.++.  .+.+ ..|+++..+.+. ...+..+..+|+|||++|++.+++.|.++|+
T Consensus       158 ~el~~l~~~~~~~~~~~~~~~~--~~~~~~~grl~~~~l~~-~~~~~~~~~vyiCGP~~m~~~v~~~l~~~Gv  227 (332)
T PRK10684        158 DEWRQLKQRYPQLNLTLVAENN--ATEGFIAGRLTRELLQQ-AVPDLASRTVMTCGPAPYMDWVEQEVKALGV  227 (332)
T ss_pred             HHHHHHHHHCCCeEEEEEeccC--CCCCccccccCHHHHHH-hcccccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            999999875  67777666543  2333 578888755543 1233346789999999999999999999987

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=8.9e-37  Score=271.66  Aligned_cols=220  Identities=23%  Similarity=0.331  Sum_probs=179.5

Q ss_pred             CCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------CeeeeeeecCCCCCC-CCC
Q 023223           54 TVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------GKPTFLAIASPPSFA-SAS  120 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------~~~~~~si~s~p~~~-~~~  120 (285)
                      +....++|++++.++     +++++++|+.+..     +.|+|||||.|.+++.       ...|+|||+|.|... .++
T Consensus         6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~   80 (286)
T cd06208           6 KNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGK-----LPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDG   80 (286)
T ss_pred             CCCeEEEEEeceeccCCCCCcceEEEEEeCCCc-----ccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCC
Confidence            345579999999999     6999999997432     6899999999987631       136899999988531 114


Q ss_pred             CeEEEEEEEeC-----------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHH
Q 023223          121 GAFEFLVKSVA-----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (285)
Q Consensus       121 ~~l~l~Vk~~~-----------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~  189 (285)
                      +.++|+||..+           |.+|.||+++++||+|.+.||+|++|...    .+..++++|||||||||||++|+++
T Consensus        81 ~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~~  156 (286)
T cd06208          81 KTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIATGTGIAPFRSFLRR  156 (286)
T ss_pred             CEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEecCccHHHHHHHHHH
Confidence            78999999874           67899999999999999999999865432    1235689999999999999999999


Q ss_pred             hhcc-----CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCC
Q 023223          190 GFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN  257 (285)
Q Consensus       190 ~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~  257 (285)
                      ++..     +...+++|+|++|+.++++|+++|++|..+   +++++++++++++.|.+..|++++.+.+...    ...
T Consensus       157 ~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~  236 (286)
T cd06208         157 LFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLD  236 (286)
T ss_pred             HHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHh
Confidence            8754     345789999999999999999999999973   6899999999888888889999987665211    122


Q ss_pred             CCCcEEEEECchhHHHHHHHHHHhc
Q 023223          258 PQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       258 ~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      ..+..+|+|||++|++.+++.|.+.
T Consensus       237 ~~~~~vYiCGp~~m~~~v~~~L~~~  261 (286)
T cd06208         237 KDNTHVYICGLKGMEPGVDDALTSV  261 (286)
T ss_pred             cCCcEEEEeCCchHHHHHHHHHHHH
Confidence            3456899999999999999999873

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=100.00  E-value=8.1e-37  Score=274.95  Aligned_cols=214  Identities=18%  Similarity=0.310  Sum_probs=176.5

Q ss_pred             CCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-----CeeeeeeecCCCCCCCCCCeEEEEE
Q 023223           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLV  127 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-----~~~~~~si~s~p~~~~~~~~l~l~V  127 (285)
                      ...|.+++|.+++.+++++++|+|++++..   .+.|.||||+++.++..     ...|+|||+|.|..   ++.|+|+|
T Consensus        49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~---~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~---~~~le~~I  122 (325)
T PTZ00274         49 SQRYEPYQLGEVIPITHDTALFRFLLHSEE---EFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT---KGYFDIIV  122 (325)
T ss_pred             CCceEEEEEEEEEEeCCCeEEEEEeCCccc---ccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC---CCeEEEEE
Confidence            457999999999999999999999986532   36899999999887622     24689999999975   68999999


Q ss_pred             EEeC-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC------CCCcEE
Q 023223          128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK------ERSDVR  200 (285)
Q Consensus       128 k~~~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~------~~~~v~  200 (285)
                      |+++ |.+|.+|+++++||+|.++||.|. |.++.    +..++++||||||||||+++|++++++.+      +..+|+
T Consensus       123 K~~~~G~~S~~L~~lk~Gd~v~v~GP~f~-~~~~~----~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~  197 (325)
T PTZ00274        123 KRKKDGLMTNHLFGMHVGDKLLFRSVTFK-IQYRP----NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLS  197 (325)
T ss_pred             EEcCCCcccHHHhcCCCCCEEEEeCCeee-cccCC----CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEE
Confidence            9987 578999999999999999999775 54431    34579999999999999999999987643      346899


Q ss_pred             EEEccCCccccccHHHHHHHHHC---CCEEEEEeeCC--CCCCCccccccchHHHHhhhcCCC--CCcEEEEECchhHHH
Q 023223          201 LYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQMAE  273 (285)
Q Consensus       201 l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~--~~~~vyiCGp~~m~~  273 (285)
                      |+|++|+.++++|+++|++|+.+   +++++.+++++  ++.|.+..|++++.+..+. ..+.  .+..+|+|||+.|++
T Consensus       198 Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~-~~~~~~~~~~vylCGPp~Mm~  276 (325)
T PTZ00274        198 FLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRT-MPAPEEKKKIIMLCGPDQLLN  276 (325)
T ss_pred             EEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHh-cCCCccCCcEEEEeCCHHHHH
Confidence            99999999999999999999873   58999999865  4678889999998765432 2222  336899999999999


Q ss_pred             HHHHH
Q 023223          274 VCYCF  278 (285)
Q Consensus       274 ~~~~~  278 (285)
                      .+.+.
T Consensus       277 av~~~  281 (325)
T PTZ00274        277 HVAGT  281 (325)
T ss_pred             HhcCC
Confidence            98654

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=8.7e-37  Score=261.37  Aligned_cols=204  Identities=19%  Similarity=0.311  Sum_probs=171.1

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC---eeeeeeecCCCCCCCCCCeEEEEEEEeC--C
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG---KPTFLAIASPPSFASASGAFEFLVKSVA--G  132 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~---~~~~~si~s~p~~~~~~~~l~l~Vk~~~--G  132 (285)
                      .++|++++.+++++++++|+.++.     +.|+||||+.|+++..+   ..|+|||+|.|.    ++.++|+||.++  |
T Consensus         2 ~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~----~~~l~~~vk~~~~~g   72 (218)
T cd06196           2 TVTLLSIEPVTHDVKRLRFDKPEG-----YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE----DDVLEFVIKSYPDHD   72 (218)
T ss_pred             ceEEEEEEEcCCCeEEEEEcCCCc-----CCCCCCCEEEEEeeCCCCCccccccccccCCC----CCeEEEEEEEcCCCC
Confidence            578999999999999999997653     57999999999997543   478999999986    689999999975  5


Q ss_pred             cchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 023223          133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA  212 (285)
Q Consensus       133 ~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~  212 (285)
                      .+|.+|+++++||+|.++||+|+ |..        .++++||||||||||++++++++++.++..+++|+|++|+.++++
T Consensus        73 ~~s~~l~~l~~G~~v~i~gP~G~-~~~--------~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~  143 (218)
T cd06196          73 GVTEQLGRLQPGDTLLIEDPWGA-IEY--------KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDII  143 (218)
T ss_pred             cHhHHHHhCCCCCEEEEECCccc-eEe--------cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEEecCCHHHHh
Confidence            78999999999999999999998 533        247999999999999999999998766667899999999999999


Q ss_pred             cHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       213 ~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |+++|++|.  +++++.+++++... ....|++++.+.++  ........+|+|||++|++.+++.|.++|+
T Consensus       144 ~~~el~~l~--~~~~~~~~s~~~~~-~~~~g~~~~~~l~~--~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~  210 (218)
T cd06196         144 LKDELEKML--GLKFINVVTDEKDP-GYAHGRIDKAFLKQ--HVTDFNQHFYVCGPPPMEEAINGALKELGV  210 (218)
T ss_pred             hHHHHHHhh--cceEEEEEcCCCCC-CeeeeEECHHHHHH--hcCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            999999995  46777777764322 12478888765553  222334689999999999999999999997

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=100.00  E-value=2.9e-36  Score=263.83  Aligned_cols=211  Identities=20%  Similarity=0.315  Sum_probs=177.1

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      ..|..++|.+++++++++++|+|+.+++..   +.|+||||+.|.++.++  ..|.|||+|+|..   ++.+.|.||+.+
T Consensus         3 ~~~~~~~V~~v~~~t~di~sf~l~~~~g~~---~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~---~~~~~isVk~~~   76 (266)
T COG1018           3 AGFRRVTVTSVEPETDDVFSFTLEPPDGLR---LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDE---DSLYRISVKRED   76 (266)
T ss_pred             CceEEEEEEEEEEecCceEEEEEEcCCCCc---cccCCCCeEEEEecCCCceeeEEEEeccCCCC---CceEEEEEEEeC
Confidence            468899999999999999999999877632   27999999999999764  5788999999985   569999999998


Q ss_pred             -CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223          132 -GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK  209 (285)
Q Consensus       132 -G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~  209 (285)
                       |..|+||+ ++++||+|.+.+|.|. |.++..    ...+++|||||+|||||+||++.+.+.+. .+|.|+|++|+.+
T Consensus        77 ~G~~S~~Lh~~lk~Gd~l~v~~P~G~-F~l~~~----~~~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~h~~R~~~  150 (266)
T COG1018          77 GGGGSNWLHDHLKVGDTLEVSAPAGD-FVLDDL----PERKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLVHAARTPA  150 (266)
T ss_pred             CCcccHHHHhcCCCCCEEEEecCCCC-ccCCCC----CCCcEEEEeccccHhHHHHHHHHHHHhCC-CCEEEEEecCChh
Confidence             79999999 7999999999999999 777642    34489999999999999999999988777 8999999999999


Q ss_pred             ccccHHHHHHHHHC--C-CEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          210 RMAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       210 ~~~~~~~l~~l~~~--~-~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++.|+++ +.+..+  + ..+..+.+     |....|+++...+.. ...+.. ..+|+|||.+|++++...|.++|+
T Consensus       151 ~~af~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~-~~~~~~-r~~y~CGp~~fm~av~~~l~~~g~  220 (266)
T COG1018         151 DLAFRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLS-AAPDGG-REVYLCGPGPFMQAVRLALEALGV  220 (266)
T ss_pred             hcchhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhc-cCCCCC-CEEEEECCHHHHHHHHHHHHHcCC
Confidence            9999999 877764  3 34444444     444567777765552 122223 899999999999999999999886

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=100.00  E-value=1.8e-36  Score=259.59  Aligned_cols=207  Identities=26%  Similarity=0.397  Sum_probs=174.6

Q ss_pred             EEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC--CCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhh
Q 023223           63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC  139 (285)
Q Consensus        63 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~--~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~  139 (285)
                      .++.++++++.++|+.++.     ..|+||||+.|++++  ....|+|||++.|..   .+.++|+||.++ |.+|+||+
T Consensus         2 ~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~~~l~vk~~~~G~~s~~l~   73 (223)
T cd00322           2 ATEDVTDDVRLFRLQLPNG-----FSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE---EGELELTVKIVPGGPFSAWLH   73 (223)
T ss_pred             ceEEecCCeEEEEEecCCC-----CCcCCCcEEEEEecCCCCcceeeeeccCCCCC---CCeEEEEEEEeCCCchhhHHh
Confidence            4677889999999997652     689999999999986  356789999999973   589999999997 79999999


Q ss_pred             CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 023223          140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE  219 (285)
Q Consensus       140 ~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~  219 (285)
                      ++++||+|.++||+|+++ +.    ....++++|||||+||||+++|++++.......+++|+|++|+.++++|+++|++
T Consensus        74 ~~~~G~~v~i~gP~G~~~-~~----~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~  148 (223)
T cd00322          74 DLKPGDEVEVSGPGGDFF-LP----LEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEE  148 (223)
T ss_pred             cCCCCCEEEEECCCcccc-cC----cccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhhHHHHHHH
Confidence            999999999999999954 32    1357899999999999999999999987666789999999999999999999999


Q ss_pred             HHH--CCCEEEEEeeCCCCCCCccccccc--hHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          220 WES--SGVKIVPVLSQPDGNWSGETGYVQ--AAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       220 l~~--~~~~v~~~~s~~~~~~~~~~g~v~--~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |..  .++++++++++++..|.+..+++.  +.+..  .....++..+|+|||++|++.+++.|.++|+
T Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yvCGp~~m~~~~~~~L~~~gv  215 (223)
T cd00322         149 LAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILA--LLPDDSGALVYICGPPAMAKAVREALVSLGV  215 (223)
T ss_pred             HHHhCCCeEEEEEecCCCCCCCcccceeeHHHHHHh--hcccccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            987  378999999988777766666554  22222  2233467899999999999999999999986

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=100.00  E-value=2.2e-36  Score=261.27  Aligned_cols=216  Identities=22%  Similarity=0.360  Sum_probs=183.2

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s  135 (285)
                      ++|++++.+++++..++|+.++..  ....|+||||+.|+++..  ...|+|||++.+..   ++.++|+||.++ |.+|
T Consensus         1 ~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~---~~~~~~~v~~~~~G~~s   75 (234)
T cd06183           1 FKLVSKEDISHDTRIFRFELPSPD--QVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD---KGYFDLLIKIYPGGKMS   75 (234)
T ss_pred             CEeEEeEecCCCEEEEEEECCCCC--CcCCCCcccEEEEEecCCCcccccccccccCCCc---CCEEEEEEEECCCCcch
Confidence            468999999999999999987532  126799999999999863  34688999998864   678999999975 7899


Q ss_pred             HHhhCCCCCCEEEEEeecCCCcccCCCCCCCCC-CeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCcccccc
Q 023223          136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEY-PTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAY  213 (285)
Q Consensus       136 ~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~-~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~  213 (285)
                      ++|+++++||+|.++||+|. |.++.    +.. ++++|||||+||||+++++++++... ...+|+++|++|+.++.+|
T Consensus        76 ~~l~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~  150 (234)
T cd06183          76 QYLHSLKPGDTVEIRGPFGK-FEYKP----NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILL  150 (234)
T ss_pred             hHHhcCCCCCEEEEECCccc-eeecC----CCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhh
Confidence            99999999999999999998 76652    233 79999999999999999999997643 4679999999999999999


Q ss_pred             HHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcC-CCCCcEEEEECchhHHH-HHHHHHHhcCC
Q 023223          214 QDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF-NPQGTGVVLCGQKQMAE-VCYCFCLEFSA  284 (285)
Q Consensus       214 ~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~vyiCGp~~m~~-~~~~~L~~~Gv  284 (285)
                      .++|++|...   +++++++++++++.|.+..|++++.+.+..... ...+..+|+|||++|++ .+++.|.++|+
T Consensus       151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~  226 (234)
T cd06183         151 REELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGY  226 (234)
T ss_pred             HHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence            9999999874   789999999888889899999998766532111 23567899999999999 99999999987

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=7.7e-36  Score=259.69  Aligned_cols=213  Identities=22%  Similarity=0.322  Sum_probs=178.4

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCC-CCCCCCeEEEEEEEe
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPS-FASASGAFEFLVKSV  130 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~-~~~~~~~l~l~Vk~~  130 (285)
                      ..+..++|++++.+++++++++|+.++.    ...|+||||+.|.++..  ...|+|||++.|. .   ++.++|+||.+
T Consensus        15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~----~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~---~~~l~~~ik~~   87 (243)
T cd06216          15 ARELRARVVAVRPETADMVTLTLRPNRG----WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQE---DGTITLTVKAQ   87 (243)
T ss_pred             cceeEEEEEEEEEcCCCcEEEEEecCCC----CCCcCCCceEEEEEEECCeEEEEEEeccCCCcCC---CCeEEEEEEEc
Confidence            3456899999999999999999996543    25799999999999643  3468999999885 3   78999999998


Q ss_pred             C-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223          131 A-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (285)
Q Consensus       131 ~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~  208 (285)
                      + |.+|.+|++ +++||+|.+.||+|. |.++.    +..++++|||||+||||++++++++...+...++.++|++|+.
T Consensus        88 ~~G~~s~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~~  162 (243)
T cd06216          88 PDGLVSNWLVNHLAPGDVVELSQPQGD-FVLPD----PLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTR  162 (243)
T ss_pred             CCCcchhHHHhcCCCCCEEEEECCcee-eecCC----CCCCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCCh
Confidence            6 678999985 999999999999998 76652    2367999999999999999999999876667889999999999


Q ss_pred             cccccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          209 KRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       209 ~~~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++++|.++|++|.+  .+++++++++++     +..|++.....++ ...+.++..+|+|||++|++++++.|.+.|+
T Consensus       163 ~~~~~~~el~~l~~~~~~~~~~~~~s~~-----~~~g~~~~~~l~~-~~~~~~~~~vyvcGp~~m~~~~~~~l~~~Gv  234 (243)
T cd06216         163 EDVIFADELRALAAQHPNLRLHLLYTRE-----ELDGRLSAAHLDA-VVPDLADRQVYACGPPGFLDAAEELLEAAGL  234 (243)
T ss_pred             hhhHHHHHHHHHHHhCCCeEEEEEEcCC-----ccCCCCCHHHHHH-hccCcccCeEEEECCHHHHHHHHHHHHHCCC
Confidence            99999999999985  378888877764     4567887765553 2233355799999999999999999999997

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=100.00  E-value=4.5e-36  Score=274.69  Aligned_cols=221  Identities=21%  Similarity=0.281  Sum_probs=179.8

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G  132 (285)
                      |+.++|.+++.+++++++|+|+.+++. ...+.|+|||||+|+++..  ...|+|||+|.|.    ++.++|+||.++ |
T Consensus         1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~-~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~----~~~l~i~vk~~~~G   75 (352)
T TIGR02160         1 FHRLTVAEVERLTADAVAISFEIPDEL-AEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA----PGEIRVAVKKIPGG   75 (352)
T ss_pred             CeEeEEEEEEecCCCeEEEEEeCCccc-cccCCCCCCCeEEEEEecCCcEeeeeccccCCCC----CCcEEEEEEEeCCC
Confidence            568899999999999999999976431 0125799999999999633  3468999999885    689999999987 5


Q ss_pred             cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223          133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (285)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~  211 (285)
                      .+|.||+ ++++||+|.+.||+|. |.++...  ...++++|||||+||||+++|+++++..+...+++|+|++|+.+++
T Consensus        76 ~~S~~l~~~l~~Gd~v~v~gP~G~-f~~~~~~--~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~  152 (352)
T TIGR02160        76 LFSTWANDEIRPGDTLEVMAPQGL-FTPDLST--PHAGHYVAVAAGSGITPMLSIAETVLAAEPRSTFTLVYGNRRTASV  152 (352)
T ss_pred             cchHHHHhcCCCCCEEEEeCCcee-eecCCCc--cccccEEEEeccccHhHHHHHHHHHHhcCCCceEEEEEEeCCHHHH
Confidence            7899997 7999999999999998 6664211  1347899999999999999999998876667899999999999999


Q ss_pred             ccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhh--hc-CCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK--KI-FNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       212 ~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~--~~-~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|+++|++|...   +++++++++++++.|.+..|+++.....+.  .. .......+|+|||+.|++.+++.|.++|+
T Consensus       153 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv  231 (352)
T TIGR02160       153 MFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGV  231 (352)
T ss_pred             HHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            999999999764   588888899877777666777754332211  11 22345689999999999999999999987

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=100.00  E-value=9.2e-36  Score=255.70  Aligned_cols=206  Identities=17%  Similarity=0.282  Sum_probs=169.0

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchHHhh
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC  139 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~~L~  139 (285)
                      |.+++.+++++++++|+.++.     ..|+||||+.|++++ ...|+|||+|.|..   .+.++|+||..+ |.+|.+|+
T Consensus         1 V~~~~~~~~~~~~i~l~~~~~-----~~~~pGQ~v~l~~~~-~~~r~ySi~s~~~~---~~~~~~~i~~~~~G~~s~~l~   71 (222)
T cd06194           1 VVSLQRLSPDVLRVRLEPDRP-----LPYLPGQYVNLRRAG-GLARSYSPTSLPDG---DNELEFHIRRKPNGAFSGWLG   71 (222)
T ss_pred             CceeeecCCCEEEEEEecCCC-----CCcCCCCEEEEEcCC-CCceeeecCCCCCC---CCEEEEEEEeccCCccchHHH
Confidence            567889999999999997643     579999999999986 44589999999874   488999999975 68999999


Q ss_pred             C-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223          140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (285)
Q Consensus       140 ~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (285)
                      + +++||.|.+.||+|+++...    ....++++|||||+||||+++++++++..+...+|.++|++|+.++++|+++|+
T Consensus        72 ~~~~~G~~v~i~gP~G~~~~~~----~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~  147 (222)
T cd06194          72 EEARPGHALRLQGPFGQAFYRP----EYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALL  147 (222)
T ss_pred             hccCCCCEEEEecCcCCeeccC----CCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHH
Confidence            7 79999999999999955432    124678999999999999999999988766778999999999999999999999


Q ss_pred             HHHHC--CCEEEEEeeCCCCCCCc-cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          219 EWESS--GVKIVPVLSQPDGNWSG-ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       219 ~l~~~--~~~v~~~~s~~~~~~~~-~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|.+.  ++++++++++++..|.. ..+.+.+.+     ....++..+|+|||++|++.+++.|.++|+
T Consensus       148 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vyicGp~~m~~~~~~~L~~~Gv  211 (222)
T cd06194         148 WLAREHPNFRYIPCVSEGSQGDPRVRAGRIAAHL-----PPLTRDDVVYLCGAPSMVNAVRRRAFLAGA  211 (222)
T ss_pred             HHHHHCCCeEEEEEEccCCCCCcccccchhhhhh-----ccccCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence            99873  78888888886554422 122222211     122356789999999999999999999987

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=100.00  E-value=5.3e-36  Score=278.99  Aligned_cols=216  Identities=23%  Similarity=0.401  Sum_probs=180.9

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------------------------Cee
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GKP  105 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------------------------~~~  105 (285)
                      .+++|++++.+++++++++|+.++...   ..|+||||++|++++.                               ...
T Consensus       134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~---~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (409)
T PRK05464        134 WECTVISNDNVATFIKELVLKIPEGEE---VPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI  210 (409)
T ss_pred             EEEEEEEcccCCchhheEEEecCCCCc---ccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence            379999999999999999999875322   4799999999998742                               346


Q ss_pred             eeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEE
Q 023223          106 TFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA  175 (285)
Q Consensus       106 ~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliA  175 (285)
                      |+|||+|.|..   ++.++|+||..          .|.+|.+|+++++||+|.+.||+|++| +.     +..++++|||
T Consensus       211 R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~-----~~~~~ivlIA  281 (409)
T PRK05464        211 RAYSMANYPEE---KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFF-AK-----DTDAEMVFIG  281 (409)
T ss_pred             eeeccCCCCCC---CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcE-ec-----CCCceEEEEE
Confidence            89999999974   67999999973          378999999999999999999999954 43     2457999999


Q ss_pred             cCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHHH
Q 023223          176 TGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFS  250 (285)
Q Consensus       176 gGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~~  250 (285)
                      |||||||+++|+++.+.. +...+++|+|++|+.++++|.++|++|..+  +++++++++++  ++.|.+..|++++.+.
T Consensus       282 gGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~  361 (409)
T PRK05464        282 GGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLY  361 (409)
T ss_pred             eccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHH
Confidence            999999999999987754 345789999999999999999999999874  88888888764  4678889999998776


Q ss_pred             Hhhh--cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          251 RAKK--IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       251 ~~~~--~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +...  .....+..+|+|||+.|++++.+.|.++|+
T Consensus       362 ~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~Gv  397 (409)
T PRK05464        362 ENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDLGV  397 (409)
T ss_pred             HhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            5321  123356789999999999999999999987

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=100.00  E-value=1e-35  Score=261.36  Aligned_cols=207  Identities=16%  Similarity=0.379  Sum_probs=174.6

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV  137 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~  137 (285)
                      .++|++++++++++++++++.+       ..|+||||+.|++++.+. ++||+++.+     ++.++|+||.. |.+|.+
T Consensus         7 ~~~v~~~~~~t~~~~~~~~~~~-------~~~~pGQ~v~l~~~~~~~-~pySi~~~~-----~~~l~~~Vk~~-G~~S~~   72 (261)
T TIGR02911         7 KSEILEIIKHTDIEYTFRMSYD-------GPVKPGQFFEVSLPKYGE-APISVSGIG-----EGYIDLTIRRV-GKVTDE   72 (261)
T ss_pred             eEEEEEEeeccCCEEEEEcCCC-------CCCCCCcEEEEEecCCCc-cceecCCCC-----CCeEEEEEEeC-chhhHH
Confidence            5899999999999999998632       468999999999986443 689998853     67899999988 999999


Q ss_pred             hhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHH
Q 023223          138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDK  216 (285)
Q Consensus       138 L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~  216 (285)
                      |+++++||+|.++||+|++|.++.    ...++++|||||+||||+++|++++++.. ...+++|+|++|+.++++|+++
T Consensus        73 L~~l~~Gd~v~i~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~e  148 (261)
T TIGR02911        73 VFTLKEGDNLFLRGPYGNGFDVDN----YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKED  148 (261)
T ss_pred             HHcCCCCCEEEEecCCCCCcccCc----cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHH
Confidence            999999999999999999776652    24579999999999999999999987643 3468999999999999999999


Q ss_pred             HHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       217 l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |++|... .++..+++++.+.|.+..|++++.+.+. ...+..+..+|+|||++|++++++.|.++|+
T Consensus       149 L~~l~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~-~~~~~~~~~v~lCGp~~mv~~~~~~L~~~Gv  214 (261)
T TIGR02911       149 IAEWKGN-INLTLTLDEAEEDYKGNIGLVTKYIPEL-TLKDIEEVQAIVVGPPIMMKFTVQELLKKGI  214 (261)
T ss_pred             HHHHHhc-CcEEEEEcCCCCCCcCCeeccCHhHHhc-cCCCccceEEEEECCHHHHHHHHHHHHHcCC
Confidence            9999874 4566667777778888899999876552 2223456789999999999999999999986

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=100.00  E-value=1.9e-35  Score=256.73  Aligned_cols=218  Identities=25%  Similarity=0.389  Sum_probs=180.8

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Cc
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GS  133 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~  133 (285)
                      ..++|++++.+++++++++|+.+.+.. ..+.|+||||+.|+++..  ...|+|||++.+.    ++.++|+|+.++ |.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~----~~~l~~~i~~~~~G~   76 (241)
T cd06214           2 HPLTVAEVVRETADAVSITFDVPEELR-DAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG----DDELRITVKRVPGGR   76 (241)
T ss_pred             ceEEEEEEEecCCCeEEEEEecCcccC-CCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC----CCcEEEEEEEcCCCc
Confidence            468899999999999999999865310 014799999999999743  4578999999886    458999999985 67


Q ss_pred             chHHhh-CCCCCCEEEEEeecCCCcccCCCCCCC-CCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223          134 TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPD-EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (285)
Q Consensus       134 ~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~-~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~  211 (285)
                      +|.||+ ++++|+++.+.||+|. |.+..    + ..++++||||||||||++++++++++.....++.++|++|+.+++
T Consensus        77 ~s~~l~~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v~l~~~~r~~~~~  151 (241)
T cd06214          77 FSNWANDELKAGDTLEVMPPAGR-FTLPP----LPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASV  151 (241)
T ss_pred             cchhHHhccCCCCEEEEeCCccc-cccCC----CCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcEEEEEEeCCHHHh
Confidence            899997 7999999999999998 54542    2 468999999999999999999998876557789999999999999


Q ss_pred             ccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh---cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK---IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       212 ~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~---~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|.+++++|...   ++++++++++++..|.+..|++.+.+..+..   ....++..+|+|||+.|++.+.+.|++.|+
T Consensus       152 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~  230 (241)
T cd06214         152 IFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGV  230 (241)
T ss_pred             hHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCC
Confidence            999999999764   6788888888777787788998876544221   122356799999999999999999999986

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=100.00  E-value=8.3e-36  Score=277.37  Aligned_cols=217  Identities=23%  Similarity=0.404  Sum_probs=180.9

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------------------------Ce
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GK  104 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------------------------~~  104 (285)
                      ..+++|++++.+++++++++|+.++...   ..|+||||++|+++..                               ..
T Consensus       129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~~---~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (405)
T TIGR01941       129 KWECEVISNDNVATFIKELVLKLPDGES---VPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEET  205 (405)
T ss_pred             eeeeEEEEcccccchhheEEEecCCCce---eeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcc
Confidence            3469999999999999999999875422   4799999999998732                               34


Q ss_pred             eeeeeecCCCCCCCCCCeEEEEEEEe---------C-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEE
Q 023223          105 PTFLAIASPPSFASASGAFEFLVKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF  174 (285)
Q Consensus       105 ~~~~si~s~p~~~~~~~~l~l~Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vli  174 (285)
                      .|+|||+|.|..   ++.++|+||..         + |.+|.||+++++||+|.++||+|++| +.     +..++++||
T Consensus       206 ~R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~-l~-----~~~~~lvlI  276 (405)
T TIGR01941       206 VRAYSMANYPAE---KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFF-AK-----DTDAEMVFI  276 (405)
T ss_pred             ceeecCCCCCCC---CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCe-ec-----CCCCCEEEE
Confidence            689999999975   68999999973         3 78999999999999999999999954 43     245789999


Q ss_pred             EcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCC--CCCCCccccccchHH
Q 023223          175 ATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAF  249 (285)
Q Consensus       175 AgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~v~~~~  249 (285)
                      |||+||||+++|+++.+.. +...+++|+|++|+.++++|.++|++|..+  +++++++++++  ++.|.+..|++++.+
T Consensus       277 AgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l  356 (405)
T TIGR01941       277 GGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVL  356 (405)
T ss_pred             ecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHH
Confidence            9999999999999987653 446789999999999999999999999764  78888888864  467888999999877


Q ss_pred             HHhhh--cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          250 SRAKK--IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       250 ~~~~~--~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      .++..  .....+..+|+|||+.|++++.+.|.++|+
T Consensus       357 ~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~Gv  393 (405)
T TIGR01941       357 YENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDLGV  393 (405)
T ss_pred             HHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            55321  123356789999999999999999999987

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK05713 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=267.63  Aligned_cols=205  Identities=17%  Similarity=0.239  Sum_probs=169.3

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~  134 (285)
                      ..+++|++++.++++++.++|+.+++     +.|+||||++|++++ ...|+|||+|.|..   ++.++|+||.++ |.+
T Consensus        91 ~~~~~V~~~~~~t~dv~~l~l~~~~~-----~~~~~GQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~I~~~~~G~~  161 (312)
T PRK05713         91 GLPARVVALDWLGGDVLRLRLEPERP-----LRYRAGQHLVLWTAG-GVARPYSLASLPGE---DPFLEFHIDCSRPGAF  161 (312)
T ss_pred             cCCeEEEEEecCCCCEEEEEEccCCc-----CCcCCCCEEEEecCC-CcccccccCcCCCC---CCeEEEEEEEcCCCcc
Confidence            35799999999999999999986432     689999999999864 45789999999864   688999999765 678


Q ss_pred             hHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223          135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (285)
Q Consensus       135 s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (285)
                      |.+|+++++||+|.+++|.|..|.++..   ...++++|||||||||||++|++++++.+...+++|+|++|+.++++|.
T Consensus       162 s~~l~~l~~Gd~v~l~~p~gg~~~~~~~---~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~  238 (312)
T PRK05713        162 CDAARQLQVGDLLRLGELRGGALHYDPD---WQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLA  238 (312)
T ss_pred             chhhhcCCCCCEEEEccCCCCceEecCC---CCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEEcCchHHhhhH
Confidence            9999999999999999999865655421   1457899999999999999999999877666789999999999999999


Q ss_pred             HHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|++|.++  ++++.++.++          .+++.+.+.  .....+..+|+|||++|++++.+.|.++|+
T Consensus       239 ~el~~l~~~~~~~~~~~~~~~----------~~~~~l~~~--~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv  298 (312)
T PRK05713        239 EPLAALAGRHPQLSVELVTAA----------QLPAALAEL--RLVSRQTMALLCGSPASVERFARRLYLAGL  298 (312)
T ss_pred             HHHHHHHHHCCCcEEEEEECc----------chhhhhhhc--cCCCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            999999874  7888776653          233333321  122345789999999999999999999987

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=100.00  E-value=1.4e-35  Score=263.28  Aligned_cols=202  Identities=20%  Similarity=0.338  Sum_probs=168.7

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L  138 (285)
                      ++|+++++++++++.++|+.++.    ...|+||||++|+++..+.+++|||++.+..   ++.++|+||.. |..|++|
T Consensus         2 ~~I~~~~~~t~~~~~l~l~~~~~----~~~~~pGQfv~l~~~~~~~~rpySias~~~~---~~~i~l~vk~~-G~~T~~L   73 (281)
T PRK06222          2 YKILEKEELAPNVFLMEIEAPRV----AKKAKPGQFVIVRIDEKGERIPLTIADYDRE---KGTITIVFQAV-GKSTRKL   73 (281)
T ss_pred             cEEEEEEEecCCEEEEEEeCchh----hccCCCCeEEEEEeCCCCCceeeEeeEEcCC---CCEEEEEEEeC-CcHHHHH
Confidence            57999999999999999987542    2478999999999986666789999997754   78999999998 9999999


Q ss_pred             hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223          139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (285)
Q Consensus       139 ~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (285)
                      +++++||+| .+.||+|++|..+      ..+++++||||+||||++++++++.+.  ..+++++|++|+.++++|.++|
T Consensus        74 ~~l~~Gd~v~~i~GP~G~~~~~~------~~~~~llIaGGiGiaPl~~l~~~l~~~--~~~v~l~~g~r~~~d~~~~~el  145 (281)
T PRK06222         74 AELKEGDSILDVVGPLGKPSEIE------KFGTVVCVGGGVGIAPVYPIAKALKEA--GNKVITIIGARNKDLLILEDEM  145 (281)
T ss_pred             hcCCCCCEEeeEEcCCCCCcccC------CCCeEEEEeCcCcHHHHHHHHHHHHHC--CCeEEEEEecCCHHHhhcHHHH
Confidence            999999999 7999999977543      357899999999999999999998653  3589999999999999999999


Q ss_pred             HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCC-CcEEEEECchhHHHHHHHHHHhcCC
Q 023223          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|...   +.. .  .+++|.+..|++++.+.+.  ..+.+ ...+|+|||+.|++.+.+.|.+.|+
T Consensus       146 ~~~~~~---~~v-~--~~d~~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv  205 (281)
T PRK06222        146 KAVSDE---LYV-T--TDDGSYGRKGFVTDVLKEL--LESGKKVDRVVAIGPVIMMKFVAELTKPYGI  205 (281)
T ss_pred             HhhCCe---EEE-E--cCCCCcCcccchHHHHHHH--hhcCCCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence            988752   222 2  2456888899999876552  22222 4689999999999999999999987

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=3.8e-35  Score=292.27  Aligned_cols=229  Identities=20%  Similarity=0.288  Sum_probs=190.1

Q ss_pred             hccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEE
Q 023223           49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFL  126 (285)
Q Consensus        49 ~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~  126 (285)
                      ..+++..|.+++|++++.++++++.|+|+++.+.  ..+.++|||||+|++...  ...|+||++|.+..   .+.|+|+
T Consensus       627 ~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~--~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~---~g~lel~  701 (888)
T PLN02252        627 VALNPREKIPCRLVEKISLSHDVRLFRFALPSED--HVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE---VGHFELV  701 (888)
T ss_pred             cccccCceEEEEEEEEEEccCCeEEEEEEECCCc--ccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC---CCEEEEE
Confidence            4556788999999999999999999999987643  235789999999998633  34688999999865   6899999


Q ss_pred             EEEe---------C-CcchHHhhCCCCCCEEEEEeecCCC-------cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHH
Q 023223          127 VKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRG-------FAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (285)
Q Consensus       127 Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~-------f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~  189 (285)
                      ||.+         + |.+|++|+++++|++|+|+||+|++       |.++..  +...++++||||||||||+++||++
T Consensus       702 VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~--~~~~~~vvmIAGGsGITPi~silr~  779 (888)
T PLN02252        702 IKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGK--PKFAKKLAMLAGGTGITPMYQVIQA  779 (888)
T ss_pred             EEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccc--cccCceEEEEecceehhHHHHHHHH
Confidence            9987         2 7899999999999999999999983       223210  1235799999999999999999999


Q ss_pred             hhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCC-CCCCccccccchHHHHhhhcCCCCCcEEE
Q 023223          190 GFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPD-GNWSGETGYVQAAFSRAKKIFNPQGTGVV  264 (285)
Q Consensus       190 ~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~-~~~~~~~g~v~~~~~~~~~~~~~~~~~vy  264 (285)
                      ++.. ++..++.|+|++|+.++++|+++|++|..+   +++++++++++. +.|.+..|++++.+.++.......+..+|
T Consensus       780 ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy  859 (888)
T PLN02252        780 ILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL  859 (888)
T ss_pred             HHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence            8864 356799999999999999999999999874   689999999865 78999999999977664222223467899


Q ss_pred             EECchhHHHH-HHHHHHhcCC
Q 023223          265 LCGQKQMAEV-CYCFCLEFSA  284 (285)
Q Consensus       265 iCGp~~m~~~-~~~~L~~~Gv  284 (285)
                      +|||++|++. ++..|.++|+
T Consensus       860 iCGPp~Mi~~av~~~L~~~G~  880 (888)
T PLN02252        860 MCGPPPMIEFACQPNLEKMGY  880 (888)
T ss_pred             EeCCHHHHHHHHHHHHHHcCC
Confidence            9999999995 7889999986

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=100.00  E-value=5.8e-35  Score=254.67  Aligned_cols=201  Identities=21%  Similarity=0.359  Sum_probs=168.6

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV  137 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~  137 (285)
                      |++++.+++++++++|+.++.    ...|+||||+.|++++.   ...|+|||+|.|..   ++.++|+||.. |..|++
T Consensus         1 V~~~~~~t~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~---~~~l~l~v~~~-G~~s~~   72 (246)
T cd06218           1 VLSNREIADDIYRLVLEAPEI----AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE---EGTITLLYKVV-GKGTRL   72 (246)
T ss_pred             CcceeEecCCeEEEEEeCcch----hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC---CCEEEEEEEEE-CcchHH
Confidence            567899999999999997652    26899999999999852   34689999998854   78999999998 888999


Q ss_pred             hhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223          138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (285)
Q Consensus       138 L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (285)
                      |+++++||+|.++||+|.+|.++     +..++++||||||||||++++++++.+  ...+++|+|++|+.++++|+++|
T Consensus        73 l~~l~~Gd~v~i~gP~G~~~~~~-----~~~~~~vlIagGtGIaP~~s~l~~~~~--~~~~v~l~~~~r~~~d~~~~~eL  145 (246)
T cd06218          73 LSELKAGDELDVLGPLGNGFDLP-----DDDGKVLLVGGGIGIAPLLFLAKQLAE--RGIKVTVLLGFRSADDLFLVEEF  145 (246)
T ss_pred             HhcCCCCCEEEEEecCCCCcCCC-----CCCCcEEEEecccCHHHHHHHHHHHHh--cCCceEEEEEccchhhhhhHHHH
Confidence            99999999999999999877664     246899999999999999999999875  34689999999999999999999


Q ss_pred             HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|..   ++.. .+  .+.|.+..|++++.+.+.  ..+..+..+|+|||+.|++++++.|++.|+
T Consensus       146 ~~l~~---~~~~-~~--~~~~~~~~g~v~~~l~~~--~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv  204 (246)
T cd06218         146 EALGA---EVYV-AT--DDGSAGTKGFVTDLLKEL--LAEARPDVVYACGPEPMLKAVAELAAERGV  204 (246)
T ss_pred             HhhCC---cEEE-Ec--CCCCCCcceehHHHHHHH--hhccCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence            99853   2332 22  234777889999877663  223356799999999999999999999987

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=100.00  E-value=8.6e-35  Score=270.09  Aligned_cols=219  Identities=21%  Similarity=0.347  Sum_probs=174.0

Q ss_pred             CCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcC---CC---eeeeeeecCCCCCC-CCC
Q 023223           53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVD---VG---KPTFLAIASPPSFA-SAS  120 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~---~~---~~~~~si~s~p~~~-~~~  120 (285)
                      .+....++|++++.+++     ++++++|+.++.    .+.|.||||++|++++   .+   ..|+|||+|.|... .+.
T Consensus       139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~----~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~  214 (411)
T TIGR03224       139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH----PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGY  214 (411)
T ss_pred             CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC----cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCC
Confidence            34456799999999954     999999998653    2689999999999874   22   35899999987421 112


Q ss_pred             CeEEEEEEEeC---------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhh
Q 023223          121 GAFEFLVKSVA---------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF  191 (285)
Q Consensus       121 ~~l~l~Vk~~~---------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~  191 (285)
                      +.++|+||+++         |.+|+||+++++||+|.++||+|++|.++.    ...++++|||||||||||++|++++.
T Consensus       215 ~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~----~~~~~lllIagGtGIAP~~s~l~~~~  290 (411)
T TIGR03224       215 NNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPN----HPESSIMMICTGTGSAPMRAMTERRR  290 (411)
T ss_pred             CEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCC----CCCCCEEEEecccCcHHHHHHHHHHH
Confidence            57999999984         789999999999999999999999886642    23578999999999999999999986


Q ss_pred             cc---CCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEE
Q 023223          192 SS---KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVV  264 (285)
Q Consensus       192 ~~---~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vy  264 (285)
                      ..   +...+++|+|++|+.++++|.++|++|....+++++++++.++   +..|++++.+.+...    .....+..||
T Consensus       291 ~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~~~sr~~~---~~~g~V~d~l~~~~~~v~~ll~~~~~~vY  367 (411)
T TIGR03224       291 RRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSRTPE---QPKRYVQDAIRERAADVAALLKDPNTYIY  367 (411)
T ss_pred             HHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEEEeccCCc---cCcccHhhHHHHhHHHHHHHHhcCCcEEE
Confidence            42   3467999999999999999999999998877777778887543   247899887665321    1122457899


Q ss_pred             EECchhHHHHHHHHHHhc
Q 023223          265 LCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       265 iCGp~~m~~~~~~~L~~~  282 (285)
                      +|||+.|++.+.+.|.+.
T Consensus       368 iCGp~~M~~~v~~~L~~~  385 (411)
T TIGR03224       368 ICGLKGMEEGVLDAFRDV  385 (411)
T ss_pred             EECCHHHHHHHHHHHHHH
Confidence            999999988888877764

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=6e-35  Score=254.87  Aligned_cols=203  Identities=20%  Similarity=0.308  Sum_probs=167.4

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L  138 (285)
                      ++|+++++++++++.++|+.++.    ...|+||||++|+++..+..++|||+|.|.+   ++.++|+||.. |..|.+|
T Consensus         1 ~~v~~~~~~t~d~~~~~l~~~~~----~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~---~~~~~~~vk~~-G~~t~~l   72 (248)
T cd06219           1 YKILEKEELAPNVKLFEIEAPLI----AKKAKPGQFVIVRADEKGERIPLTIADWDPE---KGTITIVVQVV-GKSTREL   72 (248)
T ss_pred             CEEEEEEEeCCCeEEEEEEChhh----hccCCCCcEEEEEcCCCCCccceEeEEEcCC---CCEEEEEEEeC-CchHHHH
Confidence            47899999999999999997542    2579999999999976666788999998754   78999999998 8899999


Q ss_pred             hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223          139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (285)
Q Consensus       139 ~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (285)
                      .++++|+++ .++||+|.+|..+      ..++++|||||+||||++++++++.+.  ..+++|+|++|+.++++|.++|
T Consensus        73 ~~l~~G~~v~~i~gP~G~~~~~~------~~~~~lliagG~GiaP~~~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el  144 (248)
T cd06219          73 ATLEEGDKIHDVVGPLGKPSEIE------NYGTVVFVGGGVGIAPIYPIAKALKEA--GNRVITIIGARTKDLVILEDEF  144 (248)
T ss_pred             HhcCCCCEeeeeecCCCCCeecC------CCCeEEEEeCcccHHHHHHHHHHHHHc--CCeEEEEEEcCCHHHhhhHHHH
Confidence            999999999 6999999965432      357899999999999999999997653  3589999999999999999999


Q ss_pred             HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|..+   +.. .+  ++.|.+..|++++.+.+.. ........+|+|||+.|++.+++.|.+.|+
T Consensus       145 ~~l~~~---~~~-~~--~~~~~~~~g~v~~~l~~~~-~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv  204 (248)
T cd06219         145 RAVSDE---LII-TT--DDGSYGEKGFVTDPLKELI-ESGEKVDLVIAIGPPIMMKAVSELTRPYGI  204 (248)
T ss_pred             HhhcCe---EEE-Ee--CCCCCCccccchHHHHHHH-hccCCccEEEEECCHHHHHHHHHHHHHcCC
Confidence            999753   222 22  3457777889888765531 122344689999999999999999999887

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=6.8e-34  Score=248.30  Aligned_cols=207  Identities=24%  Similarity=0.451  Sum_probs=177.1

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      .++|.+++.++++++.++|+.+...    +.++|||||+|++++ ..+++||+++.+..   .+.++|.++..+ |.+|.
T Consensus         9 ~~~I~~~~~is~~~~~l~~~~~~~~----~~~~pGQfv~l~~~~-~~~~P~si~~~~~~---~g~~~l~i~~~~~G~~T~   80 (252)
T COG0543           9 SYKVVEKEEISPDTFLLRLRLPFVA----LTFKPGQFVMLRVPG-GVRRPYSLASAPDD---KGELELHIRVYEVGKVTK   80 (252)
T ss_pred             ccEEEEEEEecCceEEEEEeccccc----cccCCCcEEEEEeCC-CcEEEeeeccCCCc---CCcEEEEEEEEeCChHHH
Confidence            5899999999999999999987642    579999999999998 77789999999975   677777777655 79999


Q ss_pred             HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 023223          137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK  216 (285)
Q Consensus       137 ~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~  216 (285)
                      ++..+++||.|.++||+|++|..+.     ..+++++||||||++|++++++++...+...+|+++|++|+.+++++.++
T Consensus        81 ~i~~~k~gd~i~v~GP~G~~~~~~~-----~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~e  155 (252)
T COG0543          81 YIFGLKEGDKIRVRGPLGNGFLREK-----IGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDE  155 (252)
T ss_pred             HHhhccCCCEEEEEcCCCCCccccc-----cCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHH
Confidence            9999999999999999999887652     45559999999999999999999976446689999999999999999999


Q ss_pred             HHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       217 l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |++|..+  +++++++   ++|.|..|++...+.++  ....+...+|+|||+.|++.+.+.+.+.|+
T Consensus       156 l~~~~~~--~~~~~~~---~~~~G~~G~v~~~~~~~--~~~~~~~~v~~cGp~~M~~~v~~~~~~~g~  216 (252)
T COG0543         156 LEELAEK--EVHPVTD---DGWKGRKGFVTTDVLKE--LLDLEVDDVYICGPPAMVKAVREKLKEYGV  216 (252)
T ss_pred             HHHhhcC--cEEEEEC---CCCCccCcceeHHHHhh--hccccCCEEEEECCHHHHHHHHHHHHhcCC
Confidence            9999876  5555555   78999999995544442  222267899999999999999999999885

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=100.00  E-value=4.1e-34  Score=249.92  Aligned_cols=201  Identities=19%  Similarity=0.305  Sum_probs=169.2

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeCC
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAG  132 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~G  132 (285)
                      +|..++|+++++++++++.++|+.+.     .+.|+||||+.|+++..+  .+|+|||++.|     ++.++|+||.. |
T Consensus         3 ~~~~~~V~~~~~~t~d~~~l~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-----~~~l~l~Vk~~-G   71 (250)
T PRK00054          3 KPENMKIVENKEIAPNIYTLVLDGEK-----VFDMKPGQFVMVWVPGVEPLLERPISISDID-----KNEITILYRKV-G   71 (250)
T ss_pred             CceEEEEEEEEEecCCeEEEEEeCcc-----ccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-----CCEEEEEEEEc-C
Confidence            46789999999999999999999542     368999999999998642  47899999987     57899999987 8


Q ss_pred             cchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 023223          133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA  212 (285)
Q Consensus       133 ~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~  212 (285)
                      ..|++|+++++||+|.+.||+|+.|.++     ...+++++||||+||||++++++++...  ..+++++|++|+.++++
T Consensus        72 ~~t~~l~~l~~G~~v~i~gP~G~~f~l~-----~~~~~~vlIagG~GiaP~~s~l~~~~~~--~~~v~l~~~~r~~~d~~  144 (250)
T PRK00054         72 EGTKKLSKLKEGDELDIRGPLGNGFDLE-----EIGGKVLLVGGGIGVAPLYELAKELKKK--GVEVTTVLGARTKDEVI  144 (250)
T ss_pred             hHHHHHhcCCCCCEEEEEcccCCCCCCC-----CCCCeEEEEeccccHHHHHHHHHHHHHc--CCcEEEEEEcCCHHHhh
Confidence            8999999999999999999999878764     2567999999999999999999998653  35799999999999999


Q ss_pred             cHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       213 ~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |+++|+++.+    +.. .+  ++.|.+..|++++.+.+.  .  .....||+|||+.|++.+++.|.+.|+
T Consensus       145 ~~~el~~~~~----~~~-~~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~~l~~~Gv  205 (250)
T PRK00054        145 FEEEFAKVGD----VYV-TT--DDGSYGFKGFVTDVLDEL--D--SEYDAIYSCGPEIMMKKVVEILKEKKV  205 (250)
T ss_pred             hHHHHHhcCC----EEE-Ee--cCCCCCcccchhHhHhhh--c--cCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence            9999998542    221 22  356777889999877653  1  344589999999999999999999986

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=4.5e-34  Score=244.28  Aligned_cols=197  Identities=22%  Similarity=0.332  Sum_probs=159.5

Q ss_pred             cCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC--CCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhh-CCCC
Q 023223           67 AAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC-GLKK  143 (285)
Q Consensus        67 ~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~--~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~-~l~~  143 (285)
                      +..++++++|+.+++    .+.|+|||||.|++++  ....|+|||++.|..   ++.++|+||.. |.+|.+|+ ++++
T Consensus         5 ~~~~~~~i~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~-G~~t~~l~~~l~~   76 (216)
T cd06198           5 EVRPTTTLTLEPRGP----ALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP---DGRLRFTIKAL-GDYTRRLAERLKP   76 (216)
T ss_pred             EecceEEEEEeeCCC----CCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC---CCeEEEEEEeC-ChHHHHHHHhCCC
Confidence            345788999986553    1579999999999986  355789999999864   57999999998 88999999 8999


Q ss_pred             CCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC
Q 023223          144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS  223 (285)
Q Consensus       144 Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~  223 (285)
                      ||+|.++||+|. |.++.     ..++++|||||+||||++++++++++.+...+++++|++|+.++++|+++|++|..+
T Consensus        77 G~~v~i~gP~G~-~~~~~-----~~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~  150 (216)
T cd06198          77 GTRVTVEGPYGR-FTFDD-----RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAA  150 (216)
T ss_pred             CCEEEEECCCCC-Ccccc-----cCceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHh
Confidence            999999999998 76652     368999999999999999999999876666899999999999999999999999876


Q ss_pred             -CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          224 -GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       224 -~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                       +++++++.++ ...|.+..+.+    .+  .....++..+|+|||+.|++.+++.|.+.|+
T Consensus       151 ~~~~~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~vyicGp~~m~~~v~~~l~~~Gv  205 (216)
T cd06198         151 AGVVLHVIDSP-SDGRLTLEQLV----RA--LVPDLADADVWFCGPPGMADALEKGLRALGV  205 (216)
T ss_pred             cCeEEEEEeCC-CCcccchhhhh----hh--cCCCcCCCeEEEECcHHHHHHHHHHHHHcCC
Confidence             5777665543 33333222222    11  1223456799999999999999999999987

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=7.6e-34  Score=253.03  Aligned_cols=211  Identities=21%  Similarity=0.340  Sum_probs=168.9

Q ss_pred             CCCeeeeEEEEEeecC----CCeEEEEEECCCCC--cccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEE
Q 023223           53 TTVWTPTPLAEISPAA----ESLFHVSIDISDAP--DIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFL  126 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~----~~~~~l~l~~~~~~--~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~  126 (285)
                      ...+.+++|++++.++    ++++.|+|+.++..  +.....|+||||+.|..++....|+|||+|.|.    ++.++|+
T Consensus        42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~~~R~YSias~p~----~g~l~l~  117 (289)
T cd06201          42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSDVPRFYSLASSSS----DGFLEIC  117 (289)
T ss_pred             CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCCCCceEecCCCCC----CCeEEEE
Confidence            5578899999999999    59999999987521  111367999999999877666679999999985    7899999


Q ss_pred             EEEeC-CcchHHhhCCCCCCEEEEEe-ecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEc
Q 023223          127 VKSVA-GSTAEVLCGLKKGDVVEISQ-VMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYG  204 (285)
Q Consensus       127 Vk~~~-G~~s~~L~~l~~Gd~v~i~g-P~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~  204 (285)
                      ||.++ |.+|.+|+++++||+|.+.+ |.|. |.+.     +..++++|||||||||||++|+++..   ...+++|+|+
T Consensus       118 Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~~~-----~~~~~lvlIAgGtGIaP~~s~l~~~~---~~~~v~L~~g  188 (289)
T cd06201         118 VRKHPGGLCSGYLHGLKPGDTIKAFIRPNPS-FRPA-----KGAAPVILIGAGTGIAPLAGFIRANA---ARRPMHLYWG  188 (289)
T ss_pred             EEeCCCccchhhHhhCCCcCEEEEEeccCCC-ccCC-----CCCCCEEEEecCcCHHHHHHHHHhhh---ccCCEEEEEE
Confidence            99865 68999999999999999985 6665 7653     24678999999999999999999852   4568999999


Q ss_pred             cCCcc-ccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhc---CCCCCcEEEEECchhHHHHHHHH
Q 023223          205 ARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQKQMAEVCYCF  278 (285)
Q Consensus       205 ~r~~~-~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~vyiCGp~~m~~~~~~~  278 (285)
                      +|+.+ +++|+++|++|..+  ++++..+++++.     ..|++++.+......   ...++..+|+|||+.|++.+.+.
T Consensus       189 ~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~~~  263 (289)
T cd06201         189 GRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVAAV  263 (289)
T ss_pred             ecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-----CcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHHHH
Confidence            99985 89999999999875  567777787643     257777655432111   11246789999999999999988


Q ss_pred             HHh
Q 023223          279 CLE  281 (285)
Q Consensus       279 L~~  281 (285)
                      |.+
T Consensus       264 L~~  266 (289)
T cd06201         264 LEE  266 (289)
T ss_pred             HHH
Confidence            876

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=1.1e-33  Score=246.13  Aligned_cols=199  Identities=20%  Similarity=0.230  Sum_probs=162.1

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEc--CCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV--DVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~--~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L  138 (285)
                      |++++.+++++++++|+.++.    ...|+||||+.|+++  +....|+|||++.|.+   ++.++|+||.. |.+|+||
T Consensus         1 i~~~~~~t~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~---~~~l~l~i~~~-G~~t~~l   72 (243)
T cd06192           1 IVKKEQLEPNLVLLTIKAPLA----ARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE---EGTISLLVEIR-GPKTKLI   72 (243)
T ss_pred             CceEEEecCCEEEEEEEccch----hhcCCCCCeEEEecCCCCCceeeeeEeeecCCC---CCEEEEEEEEc-CchHHHH
Confidence            467899999999999997643    257999999999997  3346789999999864   78999999987 8899999


Q ss_pred             hCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223          139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (285)
Q Consensus       139 ~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (285)
                      +++++||+|.++||+|++|..+     +..++++||||||||||++++++++.+.  ..+++++|++|+.++++|.++|+
T Consensus        73 ~~~~~G~~l~i~gP~G~~~~~~-----~~~~~~lliagGtGiap~~~~l~~~~~~--~~~v~l~~~~r~~~d~~~~~el~  145 (243)
T cd06192          73 AELKPGEKLDVMGPLGNGFEGP-----KKGGTVLLVAGGIGLAPLLPIAKKLAAN--GNKVTVLAGAKKAKEEFLDEYFE  145 (243)
T ss_pred             HhCCCCCEEEEEccCCCCCccC-----CCCCEEEEEeCcccHHHHHHHHHHHHHC--CCeEEEEEecCcHHHHHHHHHHH
Confidence            9999999999999999865432     2467999999999999999999998754  46899999999999999999999


Q ss_pred             HHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       219 ~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      ++.   ..+ .+.+  ++.|.+..|++++....   ........+|+|||+.|++.+++.|.+.|
T Consensus       146 ~~~---~~~-~~~~--~~~~~~~~g~v~~~~~~---~~~~~~~~v~icGp~~mv~~~~~~l~~~g  201 (243)
T cd06192         146 LPA---DVE-IWTT--DDGELGLEGKVTDSDKP---IPLEDVDRIIVAGSDIMMKAVVEALDEWL  201 (243)
T ss_pred             hhc---CeE-EEEe--cCCCCccceeechhhhh---hhcccCCEEEEECCHHHHHHHHHHHHhhc
Confidence            883   122 2333  34677778888765221   22234468999999999999999999874

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=2.7e-33  Score=242.28  Aligned_cols=191  Identities=22%  Similarity=0.325  Sum_probs=160.0

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L  138 (285)
                      .+|.+++++++++++++|+.+       ..|+||||+.|++++.. .++|||++.|      +.++|+||.. |.+|+||
T Consensus         1 ~~v~~~~~~t~~~~~~~l~~~-------~~~~pGQ~v~l~~~~~~-~~~~Si~s~~------~~l~~~v~~~-G~~s~~L   65 (233)
T cd06220           1 VTIKEVIDETPTVKTFVFDWD-------FDFKPGQFVMVWVPGVD-EIPMSLSYID------GPNSITVKKV-GEATSAL   65 (233)
T ss_pred             CEEEEEEEEcCCEEEEEEecC-------CCCCCCceEEEEeCCCC-cceeEEecCC------CeEEEEEEec-ChHHHHH
Confidence            368999999999999999852       37999999999997644 3789999987      4799999997 9999999


Q ss_pred             hCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223          139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (285)
Q Consensus       139 ~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (285)
                      +++++||+|.++||+|.+|.++       .++++|||||+||||++++++++...   .++.++|++|+.++++|+++|+
T Consensus        66 ~~l~~Gd~v~i~gP~G~~f~~~-------~~~~vliAgGtGitP~~sil~~~~~~---~~i~l~~~~r~~~d~~~~~eL~  135 (233)
T cd06220          66 HDLKEGDKLGIRGPYGNGFELV-------GGKVLLIGGGIGIAPLAPLAERLKKA---ADVTVLLGARTKEELLFLDRLR  135 (233)
T ss_pred             HhcCCCCEEEEECcCCCCccCC-------CCeEEEEecCcChHHHHHHHHHHHhc---CCEEEEEecCChHHChhHHHHh
Confidence            9999999999999999877552       57899999999999999999998754   7899999999999999999999


Q ss_pred             HHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       219 ~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++    .++.++.   ++.|.+..|++++.+.+.  . ......+|+|||++|++.+.+.|++.|+
T Consensus       136 ~~----~~~~~~~---~~~~~~~~g~~~~~l~~~--~-~~~~~~vyicGp~~m~~~~~~~L~~~g~  191 (233)
T cd06220         136 KS----DELIVTT---DDGSYGFKGFVTDLLKEL--D-LEEYDAIYVCGPEIMMYKVLEILDERGV  191 (233)
T ss_pred             hC----CcEEEEE---eCCCCcccceehHHHhhh--c-ccCCCEEEEECCHHHHHHHHHHHHhcCC
Confidence            82    1232222   235777789998866553  2 2344689999999999999999999886

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=2.3e-33  Score=247.16  Aligned_cols=201  Identities=22%  Similarity=0.400  Sum_probs=163.1

Q ss_pred             CeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhh
Q 023223           70 SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLC  139 (285)
Q Consensus        70 ~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~  139 (285)
                      ++++++|+.++..   ...|.||||+.|.+++...+|+|||+|.|...  ++.++|+||..+          |.+|.+|+
T Consensus        16 ~v~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~--~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~   90 (267)
T cd06182          16 STRHLEFDLSGNS---VLKYQPGDHLGVIPPNPLQPRYYSIASSPDVD--PGEVHLCVRVVSYEAPAGRIRKGVCSNFLA   90 (267)
T ss_pred             ceEEEEEecCCCC---cCccCCCCEEEEecCCCCCCeeEeecCCCCCC--CCEEEEEEEEEEEecCCCCeeccchhHHHh
Confidence            7999999987521   26899999999999876668999999998621  489999999874          77899999


Q ss_pred             CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhc----cCCCCcEEEEEccCCc-cccccH
Q 023223          140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS----SKERSDVRLYYGARNL-KRMAYQ  214 (285)
Q Consensus       140 ~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~----~~~~~~v~l~~~~r~~-~~~~~~  214 (285)
                      ++++||.|.+.||+|..|.++.    +..+++|||||||||||+++|+++++.    .+...+++|+|++|+. ++++|+
T Consensus        91 ~lk~Gd~v~v~~p~G~~f~l~~----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~  166 (267)
T cd06182          91 GLQLGAKVTVFIRPAPSFRLPK----DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYR  166 (267)
T ss_pred             hCCCCCEEEEEEecCCcccCCC----CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHH
Confidence            9999999999999995587753    336799999999999999999999886    2356789999999999 899999


Q ss_pred             HHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcC---CCCCcEEEEECchh-HHHHHHHHHHhc
Q 023223          215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQKQ-MAEVCYCFCLEF  282 (285)
Q Consensus       215 ~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~~-m~~~~~~~L~~~  282 (285)
                      ++|.+|...  +++++.++++++..   ..|++++.+.+.....   ..++..||+|||+. |++.+.+.|.++
T Consensus       167 del~~~~~~~~~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~~~m~~~v~~~L~~~  237 (267)
T cd06182         167 EELQEALKDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLNEGAHIYVCGDAKSMAKDVEDALVKI  237 (267)
T ss_pred             HHHHHHHhCCCcceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHhcCCEEEEECCcccchHHHHHHHHHH
Confidence            999999985  68888888875432   3567776554321110   11345899999999 999999999876

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=100.00  E-value=3.6e-33  Score=287.79  Aligned_cols=228  Identities=19%  Similarity=0.322  Sum_probs=189.6

Q ss_pred             hhccCCCCeeeeEEEEEe---ecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCe
Q 023223           48 AVRQDTTVWTPTPLAEIS---PAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGA  122 (285)
Q Consensus        48 ~~~~~~~~~~~~~V~~~~---~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~  122 (285)
                      ...+++..|.+++|.+++   +++++++.++|+++++.  ..+.|.|||||.|+++..  ...|+||++|.|..   .+.
T Consensus       906 ~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~--~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~---~~~  980 (1167)
T PTZ00306        906 KYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGAL--QRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDD---LGV  980 (1167)
T ss_pred             CcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcc--cccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCC---CCe
Confidence            455678899999999997   56889999999997542  236899999999998633  34689999999964   688


Q ss_pred             EEEEEEEeCCcchHHhhCCCCCCEEEEEeecCC---------CcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc
Q 023223          123 FEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR---------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS  193 (285)
Q Consensus       123 l~l~Vk~~~G~~s~~L~~l~~Gd~v~i~gP~G~---------~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~  193 (285)
                      ++|+||...|.+|.+|+++++||+|+++||+|.         .|.++    +...++++|||||||||||++|++++++.
T Consensus       981 i~l~Vr~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~----~~~~~~ivlIAGGtGItP~~sml~~~l~~ 1056 (1167)
T PTZ00306        981 ISILARGDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFR----GHVIRKLALIAGGTGVAPMLQIIRAALKK 1056 (1167)
T ss_pred             EEEEEEcCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeec----cCCCceEEEEECCccHhHHHHHHHHHHhC
Confidence            999999755899999999999999999998773         24343    13457899999999999999999998865


Q ss_pred             C---CCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEEC
Q 023223          194 K---ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG  267 (285)
Q Consensus       194 ~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCG  267 (285)
                      +   ...+++|+|++|+.++++|+++|++|..+   +|+++++++++++.|.+..|++++.+.++.......+..+|+||
T Consensus      1057 ~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCG 1136 (1167)
T PTZ00306       1057 PYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICG 1136 (1167)
T ss_pred             cccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeC
Confidence            3   24689999999999999999999999874   59999999998888988899999876653222233567899999


Q ss_pred             chhHHHHHHHHHHhcCC
Q 023223          268 QKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       268 p~~m~~~~~~~L~~~Gv  284 (285)
                      |+.|++.+++.|.++|+
T Consensus      1137 P~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306       1137 PPVMQRAVKADLLALGY 1153 (1167)
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            99999999999999987

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=6.2e-33  Score=241.69  Aligned_cols=195  Identities=22%  Similarity=0.355  Sum_probs=156.0

Q ss_pred             CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC------CcchHHhhC-C
Q 023223           69 ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA------GSTAEVLCG-L  141 (285)
Q Consensus        69 ~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~------G~~s~~L~~-l  141 (285)
                      +++++++|+.++.    ...|+||||++|.+++...+|+|||+|.|.    ++.++|+||..+      |.+|++|++ +
T Consensus        16 ~~v~~l~l~~~~~----~~~f~pGQ~v~l~~~~~~~~R~YSIas~p~----~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~   87 (245)
T cd06200          16 APLWRLRLTPPDA----GAQWQAGDIAEIGPRHPLPHREYSIASLPA----DGALELLVRQVRHADGGLGLGSGWLTRHA   87 (245)
T ss_pred             CceEEEEEecCCC----CCCccCCcEEEecCCCCCCCcceEeccCCC----CCEEEEEEEEeccCCCCCeeechhhhhCC
Confidence            3699999997642    268999999999987545679999999986    678999999975      458999986 6


Q ss_pred             CCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHHHHHHH
Q 023223          142 KKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQDKFKEW  220 (285)
Q Consensus       142 ~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l  220 (285)
                      ++||+|.+.||.|..|.++     +..++++|||||||||||++|++++...+ ..+++|+|++|+.+ +++|.++|++|
T Consensus        88 ~~Gd~v~i~gp~gg~F~~~-----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-~~~~~l~~g~r~~~~d~~~~~el~~~  161 (245)
T cd06200          88 PIGASVALRLRENPGFHLP-----DDGRPLILIGNGTGLAGLRSHLRARARAG-RHRNWLLFGERQAAHDFFCREELEAW  161 (245)
T ss_pred             CCCCEEEEEecCCCcccCC-----CCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCeEEEEecCCccccHhHHHHHHHH
Confidence            8999999999887668664     24578999999999999999999987543 35799999999984 89999999999


Q ss_pred             HHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHh
Q 023223          221 ESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLE  281 (285)
Q Consensus       221 ~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~  281 (285)
                      ..+  +++++.++++++.    ..|++++.+.+.....   ...+..+|+|||+ +|++++++.|.+
T Consensus       162 ~~~~~~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~  224 (245)
T cd06200         162 QAAGHLARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDE  224 (245)
T ss_pred             HHCCCcceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHH
Confidence            875  5677777876432    3678877665432111   0135789999999 999999998865

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PRK05802 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=247.57  Aligned_cols=214  Identities=11%  Similarity=0.128  Sum_probs=165.0

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      ..+.+++|++++.++++++.++|+.+++.  ....++|||||+|++++.+  ..|+|||++.+.+   ++.++|+||.. 
T Consensus        62 ~~~~~~~I~~~~~~t~dv~~l~l~~p~~~--~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~---~g~l~l~ik~~-  135 (320)
T PRK05802         62 RKTYECKIIKKENIEDNLIILTLKVPHKL--ARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE---ENIIKVAIEIR-  135 (320)
T ss_pred             cccEeEEEEEEEEecCCEEEEEEECCchh--hhccCCCCceEEEEEcCCCCEeEEeeEecccCCC---CCEEEEEEEec-
Confidence            34567999999999999999999976531  1235799999999997543  3589999999864   78999999997 


Q ss_pred             CcchHHhhCCCCCCEEEEEeecCCC-cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223          132 GSTAEVLCGLKKGDVVEISQVMGRG-FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~gP~G~~-f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~  210 (285)
                      |.+|++|+++++||+|.++||+|++ |.+.... +...+++++||||+||||++++++++++.+  .+++++|++|+.++
T Consensus       136 G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~-~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--~~v~li~g~r~~~~  212 (320)
T PRK05802        136 GVKTKKIAKLNKGDEILLRGPYWNGILGLKNIK-STKNGKSLVIARGIGQAPGVPVIKKLYSNG--NKIIVIIDKGPFKN  212 (320)
T ss_pred             ChhHHHHhcCCCCCEEEEeCCCCcCcCCccccc-ccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--CcEEEEEeCCCHHH
Confidence            9999999999999999999999887 4443111 124568999999999999999999987654  48999999999999


Q ss_pred             cccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh--cCC
Q 023223          211 MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE--FSA  284 (285)
Q Consensus       211 ~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~--~Gv  284 (285)
                      ++|.++|++|..+.. +...++....++ +.+|.+.+.+.+      .+...||+|||+.|++.+.+.|.+  .||
T Consensus       213 ~~~~~el~~~~~~~~-~~~~~ddG~~~~-~~~g~v~~~l~~------~~~~~vy~CGP~~M~k~v~~~l~~~~~~i  280 (320)
T PRK05802        213 NFIKEYLELYNIEII-ELNLLDDGELSE-EGKDILKEIIKK------EDINLIHCGGSDILHYKIIEYLDKLNEKI  280 (320)
T ss_pred             HHHHHHHHHhhCceE-EEEecccCCCCc-cccchHHHHhcC------CCCCEEEEECCHHHHHHHHHHHhhhcCCc
Confidence            999999999876422 211122211122 234566655433      123679999999999999999987  565

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=100.00  E-value=2e-32  Score=233.10  Aligned_cols=197  Identities=19%  Similarity=0.306  Sum_probs=156.8

Q ss_pred             EEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCC--cchHHhh
Q 023223           62 AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG--STAEVLC  139 (285)
Q Consensus        62 ~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G--~~s~~L~  139 (285)
                      ++++.+++++++++|+.++...+  ..|+||||+.|++++ ...|+|||++.|.+   .+.++|+||.+++  ..|.||+
T Consensus         1 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~pGQ~~~l~~~~-~~~r~ySi~s~~~~---~~~l~~~v~~~~~g~~~s~~l~   74 (211)
T cd06185           1 VRIRDEAPDIRSFELEAPDGAPL--PAFEPGAHIDVHLPN-GLVRQYSLCGDPAD---RDRYRIAVLREPASRGGSRYMH   74 (211)
T ss_pred             CceEEcCCCeEEEEEEeCCCCcC--CCCCCCceEEEEcCC-CCceeeeccCCCCC---CCEEEEEEEeccCCCchHHHHH
Confidence            36788999999999998665321  379999999999986 45689999999874   5899999999863  3799997


Q ss_pred             C-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 023223          140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK  218 (285)
Q Consensus       140 ~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~  218 (285)
                      + +++||+|.++||+|. |.+..     ..++++|||+|+||||++++++++...  ..++.++|++|+.++++|.++|+
T Consensus        75 ~~~~~Gd~v~i~gP~g~-f~~~~-----~~~~~v~ia~GtGiap~~~il~~~~~~--~~~v~l~~~~r~~~~~~~~~~l~  146 (211)
T cd06185          75 ELLRVGDELEVSAPRNL-FPLDE-----AARRHLLIAGGIGITPILSMARALAAR--GADFELHYAGRSREDAAFLDELA  146 (211)
T ss_pred             hcCCCCCEEEEcCCccC-CcCCC-----CCCcEEEEeccchHhHHHHHHHHHHhC--CCCEEEEEEeCCCcchhHHHHHh
Confidence            4 899999999999997 76642     457899999999999999999998653  46899999999999999999999


Q ss_pred             HHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       219 ~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|...++++.  .+...     ....+.+.+.+     ...+..+|+|||+.|++++++.|.++|+
T Consensus       147 ~~~~~~~~~~--~~~~~-----~~~~~~~~~~~-----~~~~~~vyicGp~~m~~~~~~~l~~~gv  200 (211)
T cd06185         147 ALPGDRVHLH--FDDEG-----GRLDLAALLAA-----PPAGTHVYVCGPEGMMDAVRAAAAALGW  200 (211)
T ss_pred             hhcCCcEEEE--ECCCC-----CccCHHHHhcc-----CCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            9974455544  33221     12233333322     1235789999999999999999999997

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=100.00  E-value=5.9e-32  Score=231.88  Aligned_cols=189  Identities=19%  Similarity=0.265  Sum_probs=148.1

Q ss_pred             EEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------------------CeeeeeeecCCCCCCCCCCeEE
Q 023223           63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------GKPTFLAIASPPSFASASGAFE  124 (285)
Q Consensus        63 ~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------------------~~~~~~si~s~p~~~~~~~~l~  124 (285)
                      +++.+++++.+++|+.+++..  .+.|+|||||.|++++.                  ...|+|||+|.|....+.+.++
T Consensus         2 ~~~~~s~~v~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~   79 (220)
T cd06197           2 KSEVITPTLTRFTFELSPPDV--VGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFE   79 (220)
T ss_pred             cceecccceeEEEEEecCCcc--ccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEE
Confidence            567899999999999876532  37899999999998742                  2358899999996411127999


Q ss_pred             EEEEEeCCcchHHhhCCC--C---CCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC-CCCc
Q 023223          125 FLVKSVAGSTAEVLCGLK--K---GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSD  198 (285)
Q Consensus       125 l~Vk~~~G~~s~~L~~l~--~---Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~-~~~~  198 (285)
                      |+||.. |.+|++|++..  .   |++|.+.||+|. |.+... ..+..++++|||||+||||+++|++++++.. ...+
T Consensus        80 l~vk~~-G~~T~~L~~~~~~~~~~G~~v~v~gP~G~-f~~~~~-~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~  156 (220)
T cd06197          80 ITVRKK-GPVTGFLFQVARRLREQGLEVPVLGVGGE-FTLSLP-GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWD  156 (220)
T ss_pred             EEEEeC-CCCCHHHHHhhhcccCCCceEEEEecCCc-ccCCcc-cccCCceEEEEecccchhhHHHHHHHHHhcccCCCc
Confidence            999998 99999998743  3   999999999997 766521 0124678999999999999999999987543 3578


Q ss_pred             EEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHH
Q 023223          199 VRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCF  278 (285)
Q Consensus       199 v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~  278 (285)
                      |+|+|++|+.++++|.++|.++.+..+.+....+                            ..+|+|||++|++++.+.
T Consensus       157 v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~----------------------------~~v~~CGP~~m~~~~~~~  208 (220)
T cd06197         157 ITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFIT----------------------------SEVYLCGPPALEKAVLEW  208 (220)
T ss_pred             EEEEEEecchhhHHHHHHHHhccCCceEEEEEEe----------------------------ccEEEECcHHHHHHHHHH
Confidence            9999999999999999999887642112111100                            179999999999999999


Q ss_pred             HHhcCC
Q 023223          279 CLEFSA  284 (285)
Q Consensus       279 L~~~Gv  284 (285)
                      +.+.+|
T Consensus       209 ~~~~~~  214 (220)
T cd06197         209 LEGKKV  214 (220)
T ss_pred             hhhcee
Confidence            987654

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.98  E-value=4.8e-31  Score=262.78  Aligned_cols=202  Identities=20%  Similarity=0.369  Sum_probs=169.9

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L  138 (285)
                      ++|++++.++++++.++|+.++.    ...|+||||++|++++.+.+++|||++.+..   ++.++|+||.+ |.+|.+|
T Consensus         2 ~~I~~~~~~t~~v~~l~l~~p~~----~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~---~g~i~~~vk~v-G~~T~~L   73 (752)
T PRK12778          2 NKIVEKEIFSEKVFLLEIEAPLI----AKSRKPGQFVIVRVGEKGERIPLTIADADPE---KGTITLVIQEV-GLSTTKL   73 (752)
T ss_pred             CEEEEEEEEcCCEEEEEEeCCch----hccCCCCeeEEEEeCCCCCeeEEEeeeeCCC---CCEEEEEEEEc-CchHHHH
Confidence            57999999999999999986532    2579999999999987677789999999864   78999999998 9999999


Q ss_pred             hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 023223          139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF  217 (285)
Q Consensus       139 ~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l  217 (285)
                      +++++||.| .+.||+|++|..+      ..++++|||||+||||++++++++.+.+  .+++++|++|+.++++|.++|
T Consensus        74 ~~l~~Gd~v~~v~GP~G~~~~~~------~~~~~llvaGG~GiaPl~~l~~~l~~~~--~~v~l~~g~r~~~~l~~~~el  145 (752)
T PRK12778         74 CELNEGDYITDVVGPLGNPSEIE------NYGTVVCAGGGVGVAPMLPIVKALKAAG--NRVITILGGRSKELIILEDEM  145 (752)
T ss_pred             hcCCCCCEeCeEeCCCCCCccCC------CCCeEEEEECCEeHHHHHHHHHHHHHCC--CeEEEEeccCCHHHhhhHHHH
Confidence            999999999 7999999977543      2478999999999999999999987643  589999999999999999999


Q ss_pred             HHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC-CCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       218 ~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|..+   +++ .+  +++|.|..|++++.+.+.  .... +...+|+|||+.|++.+.+.|.++|+
T Consensus       146 ~~~~~~---~~~-~t--~dg~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv  205 (752)
T PRK12778        146 RESSDE---VII-MT--DDGSYGRKGLVTDGLEEV--IKRETKVDKVFAIGPAIMMKFVCLLTKKYGI  205 (752)
T ss_pred             HhhcCe---EEE-EE--CCCCCCCcccHHHHHHHH--hhcCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            998652   222 22  457888999999876553  2222 23579999999999999999999887

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.97  E-value=9.1e-31  Score=230.13  Aligned_cols=204  Identities=20%  Similarity=0.291  Sum_probs=171.0

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe---eeeeeecCCCCCCCCCCeEEEEEEEeCC
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK---PTFLAIASPPSFASASGAFEFLVKSVAG  132 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~---~~~~si~s~p~~~~~~~~l~l~Vk~~~G  132 (285)
                      ...++|+..+..+.+++.++.....+     ..+++|||..++++..+-   ++||||+++..    .++++|.||.. |
T Consensus       215 ~y~~~vt~~~r~~~~t~eit~~l~~~-----~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~----~sel~FsIK~L-G  284 (438)
T COG4097         215 PYLGKVTAPQRGNVDTLEITIGLQGP-----WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE----GSELRFSIKAL-G  284 (438)
T ss_pred             ccceEEechhhcCcchheeecccCCc-----ccccCCceEEEEeccccccCCCCCeeeeeCCC----CceEEEEehhh-h
Confidence            34688999999999999999887654     348999999999997653   78999999987    56899999998 9


Q ss_pred             cchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223          133 STAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (285)
Q Consensus       133 ~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~  211 (285)
                      +.|+-|.+ +++|+++++.||+|. |..++     ...+.|+||||+||||++|+++++..+++..+|.|+|+.|+.++.
T Consensus       285 D~Tk~l~dnLk~G~k~~vdGPYG~-F~~~~-----g~~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~  358 (438)
T COG4097         285 DFTKTLKDNLKVGTKLEVDGPYGK-FDFER-----GLNTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEA  358 (438)
T ss_pred             hhhHHHHHhccCCceEEEecCcce-eeccc-----CCcccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchh
Confidence            99988885 999999999999998 88875     334499999999999999999999887788999999999999999


Q ss_pred             ccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC-CCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          212 AYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       212 ~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      .|.+|+++++++  ++.++...|       ...|++.....+.  .++. ....||+|||.+|++.++..|++.++
T Consensus       359 ~y~~eLr~~~qkl~~~~lHiiDS-------s~~g~l~~e~ler--~~~~~~~~sv~fCGP~~m~dsL~r~l~~~~~  425 (438)
T COG4097         359 LYAEELRALAQKLPNVVLHIIDS-------SKDGYLDQEDLER--YPDRPRTRSVFFCGPIKMMDSLRRDLKKQNV  425 (438)
T ss_pred             HHHHHHHHHHhcCCCeEEEEecC-------CCCCccCHHHhhc--cccccCcceEEEEcCHHHHHHHHHHHHHcCC
Confidence            999999999996  555555222       2457777655552  2232 23489999999999999999999876

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.97  E-value=1.1e-29  Score=255.87  Aligned_cols=214  Identities=16%  Similarity=0.263  Sum_probs=170.7

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcc
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGST  134 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~  134 (285)
                      .+..++|++++.++++++.++|+.++.    ...|+||||++|++...+..++|||++.+..   ++.|+|+||.+ |..
T Consensus       647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~----~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~---~g~i~l~Vk~v-G~~  718 (944)
T PRK12779        647 GQIPQTIVGKVQLAGGIVEFTVRAPMV----ARSAQAGQFVRVLPWEKGELIPLTLADWDAE---KGTIDLVVQGM-GTS  718 (944)
T ss_pred             cceEEEEEEEEEecCCEEEEEEeCCCc----cccCCCCceEEEEeCCCCCEEeEEccCCCCC---CCEEEEEEEee-ccH
Confidence            467899999999999999999987542    2579999999999876666789999998754   78999999998 888


Q ss_pred             hHHhhCCCCCCEEE-EEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 023223          135 AEVLCGLKKGDVVE-ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY  213 (285)
Q Consensus       135 s~~L~~l~~Gd~v~-i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~  213 (285)
                      |.+|+++++||.|. |.||+|++|.++.   ....++++|||||+||||+++|++++++.+  .+|+++|++|+.++++|
T Consensus       719 T~~L~~lk~Gd~l~~I~GPlG~~f~~~~---~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--~~V~li~G~Rs~edl~~  793 (944)
T PRK12779        719 SLEINRMAIGDAFSGIAGPLGRASELHR---YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--NHVTLISGFRAKEFLFW  793 (944)
T ss_pred             HHHHhcCCCcCEEeeeecCCCCCcCCcc---ccCCCcEEEEEccEeHHHHHHHHHHHHHCC--CCEEEEEEeCCHHHhhh
Confidence            99999999999995 9999999876542   112468999999999999999999987543  58999999999999988


Q ss_pred             HHHHH---HHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcC--CC--CCcEEEEECchhHHHHHHHHHHhcC
Q 023223          214 QDKFK---EWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF--NP--QGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       214 ~~~l~---~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~--~~--~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      .++++   +|...   .++++.. +  +++|.|..|++++.+.+.....  ..  ....+|+|||+.|++.+.+.|.++|
T Consensus       794 ~del~~L~~la~~~~~~~~v~~t-t--ddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~G  870 (944)
T PRK12779        794 TGDDERVGKLKAEFGDQLDVIYT-T--NDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYG  870 (944)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEE-e--cCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcC
Confidence            87654   45442   3444433 2  4567888999998765431111  11  1357999999999999999999998


Q ss_pred             C
Q 023223          284 A  284 (285)
Q Consensus       284 v  284 (285)
                      |
T Consensus       871 v  871 (944)
T PRK12779        871 V  871 (944)
T ss_pred             C
Confidence            7

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.97  E-value=1.8e-29  Score=218.65  Aligned_cols=199  Identities=11%  Similarity=0.046  Sum_probs=151.1

Q ss_pred             EEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---------------------CeeeeeeecCCCCCCCC
Q 023223           61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---------------------GKPTFLAIASPPSFASA  119 (285)
Q Consensus        61 V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---------------------~~~~~~si~s~p~~~~~  119 (285)
                      |++++++++++++|+|+.++...  ...|.||||+.|.++..                     ...|.|||++.+..   
T Consensus         1 V~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~---   75 (235)
T cd06193           1 VVRVERLTPHMRRITLGGPDLAG--FPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE---   75 (235)
T ss_pred             CceeEecCCCEEEEEEecCcccc--CCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC---
Confidence            57899999999999999865321  15789999999999753                     23588999998754   


Q ss_pred             CCeEEEEEEEeC--CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCC
Q 023223          120 SGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS  197 (285)
Q Consensus       120 ~~~l~l~Vk~~~--G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~  197 (285)
                      ++.++|.||.++  |..|+||+++++||+|.+.||+|.++ +.     ...++++|||+|+||+|+++|++++.+   ..
T Consensus        76 ~~~l~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~-~~-----~~~~~~vlia~GtGi~p~~~il~~~~~---~~  146 (235)
T cd06193          76 AGELDIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGSFL-PP-----PDADWYLLAGDETALPAIAAILEELPA---DA  146 (235)
T ss_pred             CCEEEEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCCCC-CC-----CCcceEEEEeccchHHHHHHHHHhCCC---CC
Confidence            789999998875  67999999999999999999999944 43     245789999999999999999999753   26


Q ss_pred             cEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHH
Q 023223          198 DVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYC  277 (285)
Q Consensus       198 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~  277 (285)
                      +++++|++++.+++++.+++     .+++++++.+++...  +..+..   .... ......+..+|+|||++|++.+++
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~-----~~~~~~~~~~~~~~~--~~~~~~---~~~~-~~~~~~~~~vyicGp~~mv~~v~~  215 (235)
T cd06193         147 RGTALIEVPDAADEQPLPAP-----AGVEVTWLHRGGAEA--GELALL---AVRA-LAPPAGDGYVWIAGEAGAVRALRR  215 (235)
T ss_pred             eEEEEEEECCHHHccccCCC-----CCcEEEEEeCCCCCc--chhHHH---HHhc-ccCCCCCeEEEEEccHHHHHHHHH
Confidence            89999999998766543332     267777766543321  222211   1111 122334679999999999999999


Q ss_pred             HHHhc-CC
Q 023223          278 FCLEF-SA  284 (285)
Q Consensus       278 ~L~~~-Gv  284 (285)
                      .|.+. |+
T Consensus       216 ~l~~~~g~  223 (235)
T cd06193         216 HLREERGV  223 (235)
T ss_pred             HHHHccCC
Confidence            99864 65

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.97  E-value=4.9e-29  Score=253.17  Aligned_cols=202  Identities=19%  Similarity=0.318  Sum_probs=167.9

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHh
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL  138 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L  138 (285)
                      ++|++++.++++++.++|+.++.    ...|+|||||+|++++.+.+++|||++.+..   .+.|+|.||.+ |..|.+|
T Consensus         2 ~~I~~~~~l~~~~~~l~l~ap~~----a~~~~PGQFV~l~~~~~~errplSIa~~~~~---~g~i~l~vk~v-G~~T~~L   73 (1006)
T PRK12775          2 YSIVRREAFSDTTFLWEVEAPDV----AASAEPGHFVMLRLYEGAERIPLTVADFDRK---KGTITMVVQAL-GKTTREM   73 (1006)
T ss_pred             cEEEEEEEecCCEEEEEEecCCc----ccCCCCCeeEEEEeCCCCeeEEEEecCcCCC---CCEEEEEEEec-CcHHHHH
Confidence            57999999999999999987653    2689999999999977667789999997754   78999999998 8999998


Q ss_pred             -hCCCCCCEE-EEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 023223          139 -CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK  216 (285)
Q Consensus       139 -~~l~~Gd~v-~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~  216 (285)
                       .++++||.| .+.||+|.+|..+      ..++++|||||+||||+++|++++.+.+  .+++++|++|+.++++|.++
T Consensus        74 ~~~lk~Gd~l~~v~GPlG~~~~~~------~~~~vllVaGGiGIAPl~s~~r~l~~~g--~~v~li~g~R~~~~l~~~de  145 (1006)
T PRK12775         74 MTKFKAGDTFEDFVGPLGLPQHID------KAGHVVLVGGGLGVAPVYPQLRAFKEAG--ARTTGIIGFRNKDLVFWEDK  145 (1006)
T ss_pred             HhcCCCCCEEeeeecCCCCCCCCC------CCCeEEEEEEhHHHHHHHHHHHHHHhCC--CcEEEEEeCCChHHcccHHH
Confidence             589999999 7999999976543      3578999999999999999999986543  57999999999999999999


Q ss_pred             HHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       217 l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |..+...   +++ .+  +++|.|..|++++.+.+.  ........+|+|||+.|++.+.+.+.+.||
T Consensus       146 l~~~~~~---~~v-~t--ddgs~G~~G~vt~~l~~~--l~~~~~d~vy~CGP~~Mm~av~~~~~~~gi  205 (1006)
T PRK12775        146 FGKYCDD---LIV-CT--DDGSYGKPGFVTAALKEV--CEKDKPDLVVAIGPLPMMNACVETTRPFGV  205 (1006)
T ss_pred             HHhhcCc---EEE-EE--CCCCCCCCCChHHHHHHH--hccCCCCEEEEECCHHHHHHHHHHHHHCCC
Confidence            9887642   222 22  456888899999877663  222233579999999999999999999887

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.96  E-value=9e-29  Score=210.55  Aligned_cols=221  Identities=24%  Similarity=0.430  Sum_probs=187.4

Q ss_pred             cCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC----------------------------
Q 023223           51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----------------------------  102 (285)
Q Consensus        51 ~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~----------------------------  102 (285)
                      ..-..| .++|+++.+.+.=+..+.|.+++...   ..|+||-|+++.+|..                            
T Consensus       130 fgvkkW-ectViSNdN~ATFIKEL~laip~g~~---vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~  205 (410)
T COG2871         130 FGVKKW-ECTVISNDNKATFIKELKLAIPEGEE---VPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSK  205 (410)
T ss_pred             cCccce-eEEEEeCCchhhhhhhheeeCCCCCc---cccCCCceEEEecCCccccccccCCChhHhcchhhhchheeecc
Confidence            344557 57888888888778889999987754   5799999999999831                            


Q ss_pred             ---CeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCC
Q 023223          103 ---GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP  169 (285)
Q Consensus       103 ---~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~  169 (285)
                         ...|-||++|.|.+   -+.+.|-|+...          |.+|+|+.+|++||+|.|+||+|.+|--      +...
T Consensus       206 v~e~~~rAYSmAsYPeE---~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaK------dtda  276 (410)
T COG2871         206 VDEPIIRAYSMASYPEE---KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAK------DTDA  276 (410)
T ss_pred             ccHHHHHHhhhhcChhh---cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhc------cCCC
Confidence               00244899999986   799999998752          7899999999999999999999997643      3678


Q ss_pred             eEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCC--CCCCCccccc
Q 023223          170 TVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGY  244 (285)
Q Consensus       170 ~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~--~~~~~~~~g~  244 (285)
                      .+|||.||.|.+|++|-|-..+.+ .+.+++.+.||+|+..+++|++++++++.+  ||+++.++|+|  +++|++..|+
T Consensus       277 emvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgF  356 (410)
T COG2871         277 EMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGF  356 (410)
T ss_pred             ceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhH
Confidence            999999999999999988777644 568899999999999999999999999986  89999999975  6799999999


Q ss_pred             cchHHHHh--hhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          245 VQAAFSRA--KKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       245 v~~~~~~~--~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +...+.+.  +.+..+++..+|+|||+-|..++.+.|.++||
T Consensus       357 ihnv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGV  398 (410)
T COG2871         357 IHNVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGV  398 (410)
T ss_pred             HHHHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCc
Confidence            98877653  24566789999999999999999999999997

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.96  E-value=6.8e-28  Score=205.08  Aligned_cols=176  Identities=18%  Similarity=0.275  Sum_probs=140.8

Q ss_pred             EeecC-CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHHhh
Q 023223           64 ISPAA-ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC  139 (285)
Q Consensus        64 ~~~~~-~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~L~  139 (285)
                      ++.+. ++++.++|..+..     ..|+||||+.|+++..   .+.|+|||++.+...  .+.++|+||..+|.+++.+.
T Consensus         4 ~~~~~~~~~~~l~~~~~~~-----~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~--~~~i~~~vk~~~G~~t~~~~   76 (210)
T cd06186           4 VELLPDSDVIRLTIPKPKP-----FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDE--QDTLSLIIRAKKGFTTRLLR   76 (210)
T ss_pred             EEEecCCCEEEEEEecCCC-----CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCC--CCEEEEEEEecCChHHHHHH
Confidence            34445 8999999987632     6899999999999965   357899999998620  28999999998788888777


Q ss_pred             CCC------CCCEEEEEeecCCCc-ccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC----CCCcEEEEEccCCc
Q 023223          140 GLK------KGDVVEISQVMGRGF-AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----ERSDVRLYYGARNL  208 (285)
Q Consensus       140 ~l~------~Gd~v~i~gP~G~~f-~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~----~~~~v~l~~~~r~~  208 (285)
                      +++      .|+.+.+.||+|..+ ..      ...++++|||||+||||+++++++++...    ...+|+|+|++|+.
T Consensus        77 ~~~~~~~~~~~~~v~v~GP~G~~~~~~------~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~  150 (210)
T cd06186          77 KALKSPGGGVSLKVLVEGPYGSSSEDL------LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDR  150 (210)
T ss_pred             HHHhCcCCCceeEEEEECCCCCCccCh------hhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCH
Confidence            776      899999999999854 22      25789999999999999999999998654    46789999999999


Q ss_pred             ccc-ccHHHHHH---HHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          209 KRM-AYQDKFKE---WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       209 ~~~-~~~~~l~~---l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      +++ +|.++|.+   +.... ++..++++                             +|+|||.+|++.++..+.+.
T Consensus       151 ~~~~~~~~~l~~~~~~~~~~-~~~i~~T~-----------------------------v~~CGp~~~~~~~~~~~~~~  198 (210)
T cd06186         151 EDLEWFLDELRAAQELEVDG-EIEIYVTR-----------------------------VVVCGPPGLVDDVRNAVAKK  198 (210)
T ss_pred             HHhHHHHHHHHhhhhccCCc-eEEEEEee-----------------------------EEEECchhhccHHHHHHhhc
Confidence            984 89999975   22111 34444443                             99999999999999887643

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=99.95  E-value=2.8e-27  Score=216.82  Aligned_cols=183  Identities=22%  Similarity=0.408  Sum_probs=147.4

Q ss_pred             cCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhCC-CCCCEEEEEeecCCC
Q 023223           87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCGL-KKGDVVEISQVMGRG  156 (285)
Q Consensus        87 ~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~l-~~Gd~v~i~gP~G~~  156 (285)
                      ..+.+|||+.+..+  ..+|+|||+|+|..  .++.++|+|+.+         .|.+|+||+++ ++||.|.+.+|.|..
T Consensus       130 ~~~~~gq~l~l~~~--~~~R~YSIaSsp~~--~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~~  205 (360)
T cd06199         130 ARLTAEELLDLLRP--LQPRLYSIASSPKA--VPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPH  205 (360)
T ss_pred             CCCCHHHHHHhCcC--CCCcceeeccCccc--CCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCCC
Confidence            57899999999865  57899999999963  147899999875         38899999985 699999999866645


Q ss_pred             cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeC
Q 023223          157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQ  233 (285)
Q Consensus       157 f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~  233 (285)
                      |.+..    +...+++|||+||||||+++++++.+......+++|+||+|+. ++++|++||++|...  +++++.++|+
T Consensus       206 F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr  281 (360)
T cd06199         206 FRLPE----DPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSR  281 (360)
T ss_pred             cCCCC----CCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence            87752    3467999999999999999999998765567889999999997 699999999999975  4678888998


Q ss_pred             CCCCCCccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHh
Q 023223          234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLE  281 (285)
Q Consensus       234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~  281 (285)
                      +..    ..+|+++.+.+.....   ..++..+|+|||+ .|+++++++|.+
T Consensus       282 ~~~----~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~  329 (360)
T cd06199         282 DQA----EKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLD  329 (360)
T ss_pred             CCC----CCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHH
Confidence            643    3578888776532111   1245789999999 899999888865

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=99.94  E-value=1.2e-26  Score=224.87  Aligned_cols=184  Identities=22%  Similarity=0.368  Sum_probs=149.4

Q ss_pred             cCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhC-CCCCCEEEEEeecCCC
Q 023223           87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG  156 (285)
Q Consensus        87 ~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~-l~~Gd~v~i~gP~G~~  156 (285)
                      ..+.||||+.+..+  ..+|+|||+|+|...  ++.++|+|+.+         .|.+|.||++ +++||+|.+.+|.|..
T Consensus       367 ~~~~~gq~v~ll~~--~~~R~YSIaSsp~~~--~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~  442 (597)
T TIGR01931       367 ADLDAEQLISLLRP--LTPRLYSISSSQSEV--GDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDN  442 (597)
T ss_pred             CCCCHHHHHHhCcc--cCCceeeeccCcccC--CCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCc
Confidence            47899999999976  578999999998531  57899999865         3889999997 9999999999877655


Q ss_pred             cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCC--CEEEEEeeC
Q 023223          157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQ  233 (285)
Q Consensus       157 f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--~~v~~~~s~  233 (285)
                      |.++.    +..++++|||+|||||||++++++....+..++++||||+|+ .++++|++||+.|..++  .++..++|+
T Consensus       443 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR  518 (597)
T TIGR01931       443 FRLPE----DPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR  518 (597)
T ss_pred             ccCCC----CCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence            87752    346789999999999999999999877666789999999999 77999999999999863  467778887


Q ss_pred             CCCCCCccccccchHHHHhhhcC---CCCCcEEEEEC-chhHHHHHHHHHHhc
Q 023223          234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCG-QKQMAEVCYCFCLEF  282 (285)
Q Consensus       234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCG-p~~m~~~~~~~L~~~  282 (285)
                      ..    +.++||++.+.+.....   ..++..+|+|| |+.|++.+.+.|.+.
T Consensus       519 d~----~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i  567 (597)
T TIGR01931       519 DQ----AEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDI  567 (597)
T ss_pred             CC----CCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHH
Confidence            42    35789999877632110   11457899999 889999998888653

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=99.94  E-value=1.7e-26  Score=213.50  Aligned_cols=184  Identities=22%  Similarity=0.412  Sum_probs=144.7

Q ss_pred             CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe-----------CCcchHHhhCCCCCCEEEE--EeecC
Q 023223           88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEI--SQVMG  154 (285)
Q Consensus        88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i--~gP~G  154 (285)
                      ....||++.+. + ...+|+|||+|+|...  ++.++|+|+.+           .|.+|.||+++++||+|.+  ++|.|
T Consensus       146 ~~~~~~~l~~~-p-~l~~R~YSIaSsp~~~--~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g  221 (384)
T cd06206         146 ALPLATFLAML-P-PMRPRQYSISSSPLVD--PGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS  221 (384)
T ss_pred             CCCHHHHHHhC-c-ccCCcceeeccCccCC--CCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence            46789999997 3 3578999999998531  46677777763           3779999999999999996  57888


Q ss_pred             CCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHHC-CCEEE
Q 023223          155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS-GVKIV  228 (285)
Q Consensus       155 ~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-~~~v~  228 (285)
                      . |.+..    +..++++|||||||||||++++++....    ....+++|+||+|+. ++++|++||++|... ++++.
T Consensus       222 ~-F~l~~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~l~  296 (384)
T cd06206         222 A-FRPPS----DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVVSVR  296 (384)
T ss_pred             c-cCCCC----CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCeEEE
Confidence            6 76642    3467999999999999999999987532    234689999999999 799999999999874 68899


Q ss_pred             EEeeCCCCCCCccccccchHHHHhhhc---CCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          229 PVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       229 ~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      +++|+++++   ..+|+++.+.+....   ...++..+|+|||++|++++.+.|.+.+
T Consensus       297 ~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~  351 (384)
T cd06206         297 RAYSRPPGG---GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVREVLKRIY  351 (384)
T ss_pred             EEecccCCC---CCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHHHHHHHHH
Confidence            999876432   367888876543211   0125678999999999999999998764

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.94  E-value=5.6e-26  Score=209.99  Aligned_cols=171  Identities=23%  Similarity=0.391  Sum_probs=138.8

Q ss_pred             CCeeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeE
Q 023223          102 VGKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV  171 (285)
Q Consensus       102 ~~~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~  171 (285)
                      ...+|+|||+|+|..  +++.++|+|+.+          .|.+|+||+++++|++|.+.+|.|. |.+..    +..+++
T Consensus       161 ~l~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~-F~lp~----~~~~pl  233 (382)
T cd06207         161 LIKPRYYSISSSPLK--NPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSS-FKLPK----DPKKPI  233 (382)
T ss_pred             CCCCceeeecCCCcC--CCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCc-ccCCC----CCCCCE
Confidence            367899999999963  158899999976          2789999999999999999999997 87752    346799


Q ss_pred             EEEEcCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccc
Q 023223          172 LIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY  244 (285)
Q Consensus       172 vliAgGtGIaP~~sil~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~  244 (285)
                      +|||+|||||||++++++....    ...++++|+||+|+. ++++|++||++|...  .++++.++|+++.    ..+|
T Consensus       234 ImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~----~~~y  309 (382)
T cd06207         234 IMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP----KKVY  309 (382)
T ss_pred             EEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC----CceE
Confidence            9999999999999999987532    356899999999998 899999999999986  4688888887543    3688


Q ss_pred             cchHHHHhhh----cCCCCCcEEEEECchh-HHHHHHHHHHhcC
Q 023223          245 VQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEVCYCFCLEFS  283 (285)
Q Consensus       245 v~~~~~~~~~----~~~~~~~~vyiCGp~~-m~~~~~~~L~~~G  283 (285)
                      +++.+.+...    ........+|+|||+. |++++.+.|.+.+
T Consensus       310 Vq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~  353 (382)
T cd06207         310 VQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEIL  353 (382)
T ss_pred             hHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHH
Confidence            8887655211    1222345899999998 9999999998765

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=99.93  E-value=5.3e-25  Score=204.26  Aligned_cols=173  Identities=19%  Similarity=0.324  Sum_probs=137.7

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEeC----CcchHHhhCCC-----CCCEEEEEeecCCCcccCCCCCCCCCCeEEE
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSVA----GSTAEVLCGLK-----KGDVVEISQVMGRGFAVDRIQPPDEYPTVLI  173 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----G~~s~~L~~l~-----~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vl  173 (285)
                      ..+|+|||+|+|..  .++.++|+|+.++    |.+|+||++++     +|++|.+.++.+..|.++..   +...+++|
T Consensus       172 ~~~R~YSIsSsp~~--~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~---~~~~piIm  246 (398)
T cd06203         172 LQPRPYSIASSPLE--GPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPD---DLRRPIIM  246 (398)
T ss_pred             CCCcceeecCCccc--CCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCc---CCCCCEEE
Confidence            56899999999963  1488999999875    78999999988     99999999843334877531   13579999


Q ss_pred             EEcCcchhHHHHHHHHhhc------cCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccc
Q 023223          174 FATGSGISPIRSLIESGFS------SKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY  244 (285)
Q Consensus       174 iAgGtGIaP~~sil~~~~~------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~  244 (285)
                      ||+|||||||++++++...      ....++++||||+|+. ++++|++||++|...  .+++.+++|+++++| +.++|
T Consensus       247 Ia~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g~k~y  325 (398)
T cd06203         247 VGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-STPKY  325 (398)
T ss_pred             EcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-CCcee
Confidence            9999999999999998764      2345789999999998 699999999999986  457888899876554 57899


Q ss_pred             cchHHHHhhhc----CCCCCcEEEEECc-hhHHHHHHHHHHh
Q 023223          245 VQAAFSRAKKI----FNPQGTGVVLCGQ-KQMAEVCYCFCLE  281 (285)
Q Consensus       245 v~~~~~~~~~~----~~~~~~~vyiCGp-~~m~~~~~~~L~~  281 (285)
                      |++.+.+....    ...++..+|+||| +.|.+++++.|.+
T Consensus       326 Vqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~  367 (398)
T cd06203         326 VQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVD  367 (398)
T ss_pred             cchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHH
Confidence            99987764221    1235688999999 5898999888864

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=99.93  E-value=6.3e-25  Score=204.20  Aligned_cols=170  Identities=25%  Similarity=0.397  Sum_probs=134.4

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCe
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT  170 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~  170 (285)
                      .++|+|||+|+|...  ++.++|+|+.+            .|.+|+||+++++||.|.+.++.+..|.++.    +...+
T Consensus       175 l~pR~YSIsSsp~~~--~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~----~~~~p  248 (406)
T cd06202         175 LQPRYYSISSSPDMY--PGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE----DPSVP  248 (406)
T ss_pred             cCCcccccCCCccCC--CCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCC----CCCCC
Confidence            678999999999531  46778887654            3789999999999999999876554587753    34679


Q ss_pred             EEEEEcCcchhHHHHHHHHhhc--------cCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCC
Q 023223          171 VLIFATGSGISPIRSLIESGFS--------SKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWS  239 (285)
Q Consensus       171 ~vliAgGtGIaP~~sil~~~~~--------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~  239 (285)
                      ++|||+|||||||++++++...        .+..++++|+||+|+. ++++|++||++|.+.  .+++++++|+.+.   
T Consensus       249 iImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~---  325 (406)
T cd06202         249 VIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPG---  325 (406)
T ss_pred             EEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCC---
Confidence            9999999999999999998532        1245799999999999 799999999999986  4568888998543   


Q ss_pred             ccccccchHHHHhhhc----CCCCCcEEEEECchhHHHHHHHHHHh
Q 023223          240 GETGYVQAAFSRAKKI----FNPQGTGVVLCGQKQMAEVCYCFCLE  281 (285)
Q Consensus       240 ~~~g~v~~~~~~~~~~----~~~~~~~vyiCGp~~m~~~~~~~L~~  281 (285)
                      ...+||++.+.+....    ...++..+|+|||+.|++++++.|.+
T Consensus       326 ~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~  371 (406)
T cd06202         326 KPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQR  371 (406)
T ss_pred             CCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHH
Confidence            2468999987753211    12357899999999999998888764

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>PLN02292 ferric-chelate reductase

Probab=99.92  E-value=7.7e-24  Score=205.75  Aligned_cols=201  Identities=13%  Similarity=0.126  Sum_probs=151.1

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcc
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGST  134 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~  134 (285)
                      ..+++.+++.+++++.+++++.+..     ..++||||+.+.++..  .+.|+|||+|.|..  +++.++|+||.. |.+
T Consensus       325 ~~~~Iv~~~~l~~dvv~L~~~~~~~-----~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~--~~~~l~l~IK~~-G~~  396 (702)
T PLN02292        325 NNVKLVSARVLPCDTVELNFSKNPM-----LMYSPTSIMFVNIPSISKLQWHPFTITSSSKL--EPEKLSVMIKSQ-GKW  396 (702)
T ss_pred             cceEEEEEEEcCCCEEEEEEEcCCC-----CCcCCCCeEEEEEccCCccceeeeEeeccCCC--CCCEEEEEEEcC-Cch
Confidence            4688999999999999999986542     5799999999999853  46799999998742  167899999987 888


Q ss_pred             hHHhhC-CCCCCE-----EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEEEE
Q 023223          135 AEVLCG-LKKGDV-----VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYY  203 (285)
Q Consensus       135 s~~L~~-l~~Gd~-----v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l~~  203 (285)
                      |++|++ ++.||.     |.++||+|..+ .+.    ...+++++||||+||||+++++++++++..     ..+++|+|
T Consensus       397 T~~L~~~l~~gd~i~~~~V~VeGPYG~~~-~~~----~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw  471 (702)
T PLN02292        397 STKLYHMLSSSDQIDRLAVSVEGPYGPAS-TDF----LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC  471 (702)
T ss_pred             hHHHHHhCCCCCccccceEEEECCccCCc-ccc----ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEE
Confidence            887775 788884     57999999844 221    245799999999999999999999976432     26899999


Q ss_pred             ccCCccccccHHHHH-------HHHH-CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC--CCcEEEEECchhH
Q 023223          204 GARNLKRMAYQDKFK-------EWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQM  271 (285)
Q Consensus       204 ~~r~~~~~~~~~~l~-------~l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~--~~~~vyiCGp~~m  271 (285)
                      ++|+.+++.+.+++.       ++++ .++++..+++++++... ..+..++.+.++......  ++..+.+|||+.-
T Consensus       472 ~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~  548 (702)
T PLN02292        472 AFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGV-KESTGNMNIIKTLWFKPNLSDQPISPILGPNSW  548 (702)
T ss_pred             EECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCC-cccccchhhhhhhcCCCCCCCCceEEEeCCCch
Confidence            999999998877554       2322 38888888888755432 222225555543222222  5789999999854

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=99.92  E-value=9.2e-25  Score=210.93  Aligned_cols=183  Identities=21%  Similarity=0.338  Sum_probs=146.6

Q ss_pred             cCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhC-CCCCCEEEEEeecCCC
Q 023223           87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG  156 (285)
Q Consensus        87 ~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~-l~~Gd~v~i~gP~G~~  156 (285)
                      ..+.+|||+.+..+  ..+|+|||+|+|..  .++.++|+|+.+         .|.+|.||++ +++|++|.+.+|.|..
T Consensus       370 ~~~~~~q~l~ll~~--l~pR~YSIaSsp~~--~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~  445 (600)
T PRK10953        370 AQLDAEQLIGLLRP--LTPRLYSIASSQAE--VENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHNDN  445 (600)
T ss_pred             CCCCHHHHHHhCCC--CCCeeeecccCCCC--CCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCCc
Confidence            36899999999876  57899999999953  157889987653         3678999985 9999999999988766


Q ss_pred             cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCCC--EEEEEeeC
Q 023223          157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSGV--KIVPVLSQ  233 (285)
Q Consensus       157 f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~~--~v~~~~s~  233 (285)
                      |.+..    +...+++|||+|||||||++++++....+...+++||||+|+ .++++|++||++|.+++.  ++...+|+
T Consensus       446 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR  521 (600)
T PRK10953        446 FRLPA----NPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR  521 (600)
T ss_pred             ccCCC----CCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence            87752    356899999999999999999999877666789999999998 779999999999998753  57788887


Q ss_pred             CCCCCCccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHh
Q 023223          234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLE  281 (285)
Q Consensus       234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~  281 (285)
                      .+    +.++|||+.+.+.....   ..++..+||||+. .|.+++++.|.+
T Consensus       522 d~----~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~  569 (600)
T PRK10953        522 DQ----KEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLE  569 (600)
T ss_pred             CC----CCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHH
Confidence            54    24789999777632211   0246789999996 688888877754

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=99.91  E-value=1.7e-23  Score=195.26  Aligned_cols=169  Identities=21%  Similarity=0.373  Sum_probs=133.5

Q ss_pred             CCeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCC---------------------CCCEEEEE
Q 023223          102 VGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLK---------------------KGDVVEIS  150 (285)
Q Consensus       102 ~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~---------------------~Gd~v~i~  150 (285)
                      ...+|+|||+|+|..  .++.++|+|+.+.          |-+|+||+++.                     +||+|.+.
T Consensus       175 ~~~pR~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~  252 (416)
T cd06204         175 RLQPRYYSISSSSKV--HPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVF  252 (416)
T ss_pred             cCCCcceeeccCccC--CCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEE
Confidence            367899999999953  1578999998652          77899999866                     79999999


Q ss_pred             eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHHC--
Q 023223          151 QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS--  223 (285)
Q Consensus       151 gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--  223 (285)
                      .|.|. |.+..    +...+++|||+||||||+++++++....    ....+++|+||+|+. ++++|+++|++|...  
T Consensus       253 ~~~g~-F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~  327 (416)
T cd06204         253 VRRSN-FRLPT----KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGG  327 (416)
T ss_pred             EecCC-CCCCC----CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence            99996 87752    3468999999999999999999986432    135689999999998 799999999999875  


Q ss_pred             CCEEEEEeeCCCCCCCccccccchHHHHhhhcC---CCCCcEEEEECchh-HHHHHHHHHHh
Q 023223          224 GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQKQ-MAEVCYCFCLE  281 (285)
Q Consensus       224 ~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~~-m~~~~~~~L~~  281 (285)
                      +++++.++|++++    ..+|+++.+.+.....   ..++..||+|||+. |++++.+.|.+
T Consensus       328 ~~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~  385 (416)
T cd06204         328 LLELVTAFSREQP----KKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLE  385 (416)
T ss_pred             ceEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHH
Confidence            5788888887543    4678888775432110   12457899999998 99999888865

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PRK06214 sulfite reductase; Provisional

Probab=99.91  E-value=3.4e-23  Score=196.51  Aligned_cols=169  Identities=22%  Similarity=0.419  Sum_probs=129.0

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEE
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL  172 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~v  172 (285)
                      .++|+|||+|+|..  .++.++|+||.+         .|.+|+||+ .+++|++|.+.++.+.+|.+..    +...+++
T Consensus       314 l~pR~YSISSsP~~--~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~gF~lp~----~~~~PiI  387 (530)
T PRK06214        314 LQPRLYSISSSPKA--TPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHGFALPA----DPNTPII  387 (530)
T ss_pred             CCcEEEEeccCCcC--CCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCCCccCC----CCCCCEE
Confidence            67899999999953  157899999875         278899998 6999999999763333477642    3457999


Q ss_pred             EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCC--CEEEEEeeCCCCCCCccccccchHH
Q 023223          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAF  249 (285)
Q Consensus       173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~g~v~~~~  249 (285)
                      |||+|||||||++++++.+..+...+++||||+|. .++++|++||++|...+  .+++.++|++.    +.++|+++.+
T Consensus       388 mIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~----~~k~YVQ~~L  463 (530)
T PRK06214        388 MVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDG----EEKTYVQDRM  463 (530)
T ss_pred             EEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCC----CCCCchhhHH
Confidence            99999999999999998765555678999999965 66899999999999864  45677788754    2367888876


Q ss_pred             HHhhhc---CCCCCcEEEEECchh-HHHHHHHHHHh
Q 023223          250 SRAKKI---FNPQGTGVVLCGQKQ-MAEVCYCFCLE  281 (285)
Q Consensus       250 ~~~~~~---~~~~~~~vyiCGp~~-m~~~~~~~L~~  281 (285)
                      .+....   ...++..+|||||.. |.+++++.|.+
T Consensus       464 ~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~  499 (530)
T PRK06214        464 RENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVD  499 (530)
T ss_pred             HHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHH
Confidence            542211   112467899999965 65888887764

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.89  E-value=1.2e-21  Score=191.11  Aligned_cols=194  Identities=14%  Similarity=0.197  Sum_probs=141.6

Q ss_pred             EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeCCcchHH
Q 023223           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV  137 (285)
Q Consensus        60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s~~  137 (285)
                      .+++++..+++++++++..+.     .++|+||||+.+.++..+  +.|+|||+|.|..  +++.++|.||.. |+.++.
T Consensus       315 ~vvs~~~~~~~~v~l~i~r~~-----~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~--~~~~l~~~IK~~-gG~T~~  386 (722)
T PLN02844        315 CILSARLFPCKAIELVLPKDP-----GLKYAPTSVIFMKIPSISRFQWHPFSITSSSNI--DDHTMSVIIKCE-GGWTNS  386 (722)
T ss_pred             EEEEEEEecCCEEEEEEECCC-----CCCcCCCeeEEEEECCCCceeEEEEEeecCCCC--CCCeEEEEEEeC-CCchHH
Confidence            355666778889888887543     268999999999999643  5799999997632  167899999997 555555


Q ss_pred             hhC-----CCCC------CEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEE
Q 023223          138 LCG-----LKKG------DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRL  201 (285)
Q Consensus       138 L~~-----l~~G------d~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l  201 (285)
                      |.+     +++|      .++.++||+|. +..+.    ...+++++||||+||||++++++++.+.++     ..+|.|
T Consensus       387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~-~s~~~----~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~L  461 (722)
T PLN02844        387 LYNKIQAELDSETNQMNCIPVAIEGPYGP-ASVDF----LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQL  461 (722)
T ss_pred             HHHHHHhhccCCCCcccceEEEEECCccC-CCCCc----cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEE
Confidence            532     3345      37899999997 44332    246899999999999999999999985432     368999


Q ss_pred             EEccCCccccccHHHHHH-----HHH-CCCEEEEEeeCCCCCCCccccccchHHHH-----hhhcCCCCCcEEEEECchh
Q 023223          202 YYGARNLKRMAYQDKFKE-----WES-SGVKIVPVLSQPDGNWSGETGYVQAAFSR-----AKKIFNPQGTGVVLCGQKQ  270 (285)
Q Consensus       202 ~~~~r~~~~~~~~~~l~~-----l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~-----~~~~~~~~~~~vyiCGp~~  270 (285)
                      +|++|+.+++.|.+++..     +.+ .+++++.++++++...    .++++.+.+     + ...+++...+.+||++.
T Consensus       462 Iw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~----~rl~~~i~~~~~~~~-~~~~~~~~~~~i~G~~~  536 (722)
T PLN02844        462 IYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPN----ATLRELLNQFSQVQT-VNFSTKCSRYAIHGLES  536 (722)
T ss_pred             EEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCC----CchhhHhhccchhhh-cCCCCCCCceEEeCCCc
Confidence            999999999999988752     222 3788888888865432    244443332     2 12455778899999975


Q ss_pred             H
Q 023223          271 M  271 (285)
Q Consensus       271 m  271 (285)
                      -
T Consensus       537 ~  537 (722)
T PLN02844        537 F  537 (722)
T ss_pred             h
Confidence            3

>PLN02631 ferric-chelate reductase

Probab=99.89  E-value=8e-22  Score=191.44  Aligned_cols=165  Identities=18%  Similarity=0.226  Sum_probs=132.7

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcch
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA  135 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s  135 (285)
                      .+++++++.+++++.++++..+..     .+++||||+.++++..  .+.|+|||+|.|..  +++.++|+||.. |..|
T Consensus       309 ~~~lv~~~~l~~d~l~l~~~~~~~-----~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~--~~~~L~~~IK~~-Gg~T  380 (699)
T PLN02631        309 RSRLVSARILPSDNLELTFSKTPG-----LHYTPTSILFLHVPSISKLQWHPFTITSSSNL--EKDTLSVVIRRQ-GSWT  380 (699)
T ss_pred             eEEEEEEEEeCCCeEEEEEEcCCC-----CcCCCCceEEEEeccCCccceEEEEEeccCCC--CCCEEEEEEEcC-ChHH
Confidence            367788888899999999875332     5799999999999964  45799999998742  157899999986 8899


Q ss_pred             HHhhC-CCC-CC--EEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEEEEccC
Q 023223          136 EVLCG-LKK-GD--VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYYGAR  206 (285)
Q Consensus       136 ~~L~~-l~~-Gd--~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l~~~~r  206 (285)
                      ++|.+ ++. |+  +|.++||+|. +..+.    ...+++++||||+||||+++++++++.+..     ..+++|+|++|
T Consensus       381 ~~L~~~l~~~g~~i~V~VeGPYG~-~~~~~----~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR  455 (699)
T PLN02631        381 QKLYTHLSSSIDSLEVSTEGPYGP-NSFDV----SRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFK  455 (699)
T ss_pred             HHHHHhhhcCCCeeEEEEECCCCC-CCCCc----CCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEEC
Confidence            98875 654 45  6778999997 33321    256789999999999999999999975422     34799999999


Q ss_pred             CccccccHHHHHH-------HHHCCCEEEEEeeCCC
Q 023223          207 NLKRMAYQDKFKE-------WESSGVKIVPVLSQPD  235 (285)
Q Consensus       207 ~~~~~~~~~~l~~-------l~~~~~~v~~~~s~~~  235 (285)
                      +.+++.|.||++.       +.+.+++++.++||++
T Consensus       456 ~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~  491 (699)
T PLN02631        456 HYHDLAFLDLIFPLDISVSDISRLNLRIEAYITRED  491 (699)
T ss_pred             CHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCC
Confidence            9999999999986       5556899999999864

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.1e-21  Score=187.54  Aligned_cols=168  Identities=23%  Similarity=0.450  Sum_probs=140.4

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEeC---------CcchHHhhCCCC-CCEEEEEeecCCCcccCCCCCCCCCCeEE
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSVA---------GSTAEVLCGLKK-GDVVEISQVMGRGFAVDRIQPPDEYPTVL  172 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~---------G~~s~~L~~l~~-Gd~v~i~gP~G~~f~~~~~~~~~~~~~~v  172 (285)
                      .++|+|||+|++...  .++++++|..+.         |.+|.||+++.. ||.+.+....++.|.+..    +..++++
T Consensus       371 lkPR~YSIsSs~~~~--~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~----~~~~PiI  444 (587)
T COG0369         371 LKPRLYSIASSPGVS--PDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPE----DPETPII  444 (587)
T ss_pred             CCCeeeEeccCCCCC--CCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCC----CCCCceE
Confidence            578999999999863  477888887664         678999998766 999999888886688763    3449999


Q ss_pred             EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHHCC--CEEEEEeeCCCCCCCccccccchHH
Q 023223          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAF  249 (285)
Q Consensus       173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~g~v~~~~  249 (285)
                      ||+.|||||||++++++....+..++++||||+|+ ..+++|++|+++|..+|  .++...+|+.+    ..+.|||+.+
T Consensus       445 MIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq----~~KiYVQd~l  520 (587)
T COG0369         445 MIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQ----EEKIYVQDRL  520 (587)
T ss_pred             EEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecC----CCCccHHHHH
Confidence            99999999999999999988777779999999999 66999999999999986  56777888875    4578999988


Q ss_pred             HHhhh----cCCCCCcEEEEEC-chhHHHHHHHHHHh
Q 023223          250 SRAKK----IFNPQGTGVVLCG-QKQMAEVCYCFCLE  281 (285)
Q Consensus       250 ~~~~~----~~~~~~~~vyiCG-p~~m~~~~~~~L~~  281 (285)
                      .+...    ..+ +...+|||| ...|.+.+.++|.+
T Consensus       521 re~~del~~~l~-~ga~~YVCGd~~~Ma~dV~~AL~~  556 (587)
T COG0369         521 REQADELWEWLE-EGAHIYVCGDAKGMAKDVEEALLD  556 (587)
T ss_pred             HHhHHHHHHHHH-CCCEEEEeCCCccchHHHHHHHHH
Confidence            87433    223 348999999 89999999999875

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.87  E-value=2.7e-22  Score=169.92  Aligned_cols=214  Identities=18%  Similarity=0.199  Sum_probs=146.0

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe------eeeeeecCCCCCCCCCCeEEEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK------PTFLAIASPPSFASASGAFEFLV  127 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~------~~~~si~s~p~~~~~~~~l~l~V  127 (285)
                      ..|.+++|.+.+.++.|+..+++...++ .+...+..|||||.+.....+.      -+.||.++...    .+.|+|.|
T Consensus       147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~-~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~----rN~~R~sV  221 (385)
T KOG3378|consen  147 DGEVEFKVTELINESSDVKSVYLGPKDP-AFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTC----RNQFRISV  221 (385)
T ss_pred             CCccceeeeeeeccccceeEEEecCCCc-ceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhh----ccceeEEE
Confidence            3688999999999999999999986654 5666778999999998874432      23356666555    78999999


Q ss_pred             EEeCC-cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEcc
Q 023223          128 KSVAG-STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGA  205 (285)
Q Consensus       128 k~~~G-~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~  205 (285)
                      |+..| -+|+++| ++++||.|.++.|-|+ |.+.+.. .....+++++|||+||||+++||+..+.-...+.+..+...
T Consensus       222 r~~A~G~VS~~~H~~~KVGD~v~~S~PAG~-F~~~r~~-~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~RP~~~~~~~  299 (385)
T KOG3378|consen  222 RRVAGGVVSNFVHDNLKVGDIVGVSPPAGN-FVYKRSE-ENVNRPLLCFAGGIGITPLIPIIETALLCYSSRPFKQWLEQ  299 (385)
T ss_pred             eehhchhhHHHhhccccccceeeccCCCcc-ceeehhh-hccCCceEEecCCcCccccHHHHHHHHhcCCCCcHHHHHHH
Confidence            99875 7899999 5999999999999999 6664422 12458999999999999999999997642222222111111


Q ss_pred             CCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          206 RNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       206 r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      -+.+.-.+...-+.+..+  +.+=+++.+       .....+++.+.++   .+...+++|+|||..+|+.+...|.++|
T Consensus       300 ~~~K~k~~~K~~e~~~~E~s~~~~~IV~~-------~~~~iI~~~~L~~---~~~s~~DiY~~G~~~~M~~~~~~L~~L~  369 (385)
T KOG3378|consen  300 LKLKYKENLKLKEFFSEESSVTKEQIVDE-------VMTRIINEEDLEK---LDLSECDIYMLGPNNYMRFVKQELVKLG  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhhhh-------hhhhhcCHHHhhh---cChhhCceeeeCcHHHHHHHHHHHHHhc
Confidence            111111111111111111  111111111       1223455555553   3557889999999999999999999998


Q ss_pred             C
Q 023223          284 A  284 (285)
Q Consensus       284 v  284 (285)
                      +
T Consensus       370 ~  370 (385)
T KOG3378|consen  370 V  370 (385)
T ss_pred             C
Confidence            6

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.85  E-value=4.1e-21  Score=146.29  Aligned_cols=104  Identities=27%  Similarity=0.530  Sum_probs=88.7

Q ss_pred             EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--C-CEEEEEeeCCCCCCCccccccchHH
Q 023223          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAF  249 (285)
Q Consensus       173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~-~~v~~~~s~~~~~~~~~~g~v~~~~  249 (285)
                      ||||||||||++++++++++.+...+++|+|++|+.++++|+++|++|...  + ++++.+ ++.+++|.+..|++++.+
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~~   79 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDLL   79 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHHH
T ss_pred             CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHHH
Confidence            799999999999999999987788999999999999999999999999875  3 555554 666778889999999988


Q ss_pred             HHhhhc--CCCCCcEEEEECchhHHHHHHH
Q 023223          250 SRAKKI--FNPQGTGVVLCGQKQMAEVCYC  277 (285)
Q Consensus       250 ~~~~~~--~~~~~~~vyiCGp~~m~~~~~~  277 (285)
                      .+....  .+..+..+|+|||++|++++++
T Consensus        80 ~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~  109 (109)
T PF00175_consen   80 LEDLLPEKIDPDDTHVYICGPPPMMKAVRK  109 (109)
T ss_dssp             HHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred             HHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence            654222  3567889999999999999874

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=99.80  E-value=3.5e-19  Score=170.38  Aligned_cols=182  Identities=20%  Similarity=0.385  Sum_probs=134.5

Q ss_pred             CCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-----------CcchHHhhCCCCCCEEEEEeecCCC-c
Q 023223           90 RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-----------GSTAEVLCGLKKGDVVEISQVMGRG-F  157 (285)
Q Consensus        90 ~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-----------G~~s~~L~~l~~Gd~v~i~gP~G~~-f  157 (285)
                      .|++|+.=.+| -.++|+|||+|+|...  .+.+.+++-.+.           |-+|+||+++++|+.+....+.+.. |
T Consensus       408 pP~~~ll~~lp-~L~pR~YSIssS~~~~--~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~f  484 (645)
T KOG1158|consen  408 PPLPHLLELLP-RLQPRYYSISSSPKVH--PNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMF  484 (645)
T ss_pred             CCHHHHHHhCc-cccccccccccCcccC--CCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccce
Confidence            45544322222 3789999999999764  455555554321           5679999999999999854455542 5


Q ss_pred             ccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCC-----CCcEEEEEccCCcccc-ccHHHHHHHHHC--CCEEEE
Q 023223          158 AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYYGARNLKRM-AYQDKFKEWESS--GVKIVP  229 (285)
Q Consensus       158 ~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~-----~~~v~l~~~~r~~~~~-~~~~~l~~l~~~--~~~v~~  229 (285)
                      .+.    ++...+++||+.|||||||++++++.+....     ..-++||||+|+.+.. +|++|++++.+.  ..++..
T Consensus       485 rlp----~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~  560 (645)
T KOG1158|consen  485 RLP----SDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDV  560 (645)
T ss_pred             ecC----CCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhhee
Confidence            443    3567899999999999999999999875421     2228999999999855 999999999765  457788


Q ss_pred             EeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEEEECchh-HHHHHHHHHHh
Q 023223          230 VLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEVCYCFCLE  281 (285)
Q Consensus       230 ~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vyiCGp~~-m~~~~~~~L~~  281 (285)
                      .+||.+.   +..-|||+.+.+...    ....+++.+|+||... |.+.+.++|..
T Consensus       561 A~SReq~---~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~  614 (645)
T KOG1158|consen  561 AFSREQT---PKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVR  614 (645)
T ss_pred             eeeccCC---CCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHH
Confidence            8998753   457788887766432    2334689999999988 99999998875

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=99.78  E-value=4.8e-18  Score=127.34  Aligned_cols=94  Identities=28%  Similarity=0.385  Sum_probs=81.3

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~  134 (285)
                      +++|++++.++++++.++|+.+++..  ...|.||||+.|+++..+  ..|+|||++.+..   .+.++|+||.++ |.+
T Consensus         1 ~~~v~~~~~~s~~~~~~~~~~~~~~~--~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~---~~~~~~~ik~~~~G~~   75 (99)
T PF00970_consen    1 KAKVVEIEELSPDVKIFRFKLPDPDQ--KLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD---KGYLEFAIKRYPNGRV   75 (99)
T ss_dssp             EEEEEEEEEESSSEEEEEEEESSTTT--T-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS---SSEEEEEEEECTTSHH
T ss_pred             CEEEEEEEEeCCCeEEEEEEECCCCc--ccccCcceEEEEEEccCCcceecceeEeeecCC---CCcEEEEEEeccCCHH
Confidence            57899999999999999999876532  367999999999999443  4789999999975   789999999996 589


Q ss_pred             hHHhhCCCCCCEEEEEeecCCCc
Q 023223          135 AEVLCGLKKGDVVEISQVMGRGF  157 (285)
Q Consensus       135 s~~L~~l~~Gd~v~i~gP~G~~f  157 (285)
                      |+||+++++||+|.++||+|+ |
T Consensus        76 S~~L~~l~~Gd~v~i~gP~G~-f   97 (99)
T PF00970_consen   76 SRYLHQLKPGDEVEIRGPYGN-F   97 (99)
T ss_dssp             HHHHHTSCTTSEEEEEEEESS-E
T ss_pred             HHHHHhCCCCCEEEEEEcccc-c
Confidence            999999999999999999998 5

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=2.2e-17  Score=161.14  Aligned_cols=210  Identities=17%  Similarity=0.295  Sum_probs=150.6

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeCCcch
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA  135 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~s  135 (285)
                      .+++.++.-+++++.++++..+.     .+.++||||+.|.+|.-  .+.+||||+|+|+    ++.+.++||.. |++|
T Consensus       356 ~~~i~~~~llp~~vi~L~~~Kp~-----~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~----dd~lsvhIk~~-g~wT  425 (646)
T KOG0039|consen  356 NVKIAKVVLLPSDVLELIMSKPP-----GFKYKPGQYIFVNCPSLSKLEWHPFTITSAPE----DDFLSVHIKAL-GDWT  425 (646)
T ss_pred             CceEEEEEEcCCCeEEEEEeCCC-----CCCCCCCCEEEEECccccccccCCceeecCCC----CCEEEEEEEec-CcHH
Confidence            47788999999999999998652     38999999999999954  6789999999994    89999999999 8887


Q ss_pred             HHhhC-CC------------CCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC--------
Q 023223          136 EVLCG-LK------------KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK--------  194 (285)
Q Consensus       136 ~~L~~-l~------------~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~--------  194 (285)
                      +.|.+ +.            ..-++.|.||+|.+- -+-    ...+.+++|++|+|+||+.|++++++.+.        
T Consensus       426 ~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s-~d~----~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~  500 (646)
T KOG0039|consen  426 EKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPS-QDV----FKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP  500 (646)
T ss_pred             HHHHHHHhhhcccccccccccCceEEEECCCCCCc-hhh----hhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc
Confidence            77654 22            144799999999864 111    36788999999999999999999998432        


Q ss_pred             --------CCCcEEEEEccCCcccc-ccHHHHHHHHHC---C-CEEEEEeeCC----CCCCC------------------
Q 023223          195 --------ERSDVRLYYGARNLKRM-AYQDKFKEWESS---G-VKIVPVLSQP----DGNWS------------------  239 (285)
Q Consensus       195 --------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~---~-~~v~~~~s~~----~~~~~------------------  239 (285)
                              ...++.++|.+|+..++ .|.+.+.+++..   + ++++...++.    +..+.                  
T Consensus       501 ~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~  580 (646)
T KOG0039|consen  501 TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIV  580 (646)
T ss_pred             cccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccc
Confidence                    23568999998887775 777777766642   2 3444444321    10000                  


Q ss_pred             -c-----ccccc--chHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          240 -G-----ETGYV--QAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       240 -~-----~~g~v--~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                       |     .-||.  .+.+.+...........||.|||+.|++.+++.+.+.
T Consensus       581 ~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~  631 (646)
T KOG0039|consen  581 TGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDF  631 (646)
T ss_pred             ccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence             0     01222  2222221111111227999999999999999999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.74  E-value=1.4e-16  Score=158.47  Aligned_cols=128  Identities=16%  Similarity=0.207  Sum_probs=104.5

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-----CeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-----~~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      ..++|++++.++++++.++|+.+..    ...++||||++|+.++.     ..+++|||++.+.+   .+.++|+++.+ 
T Consensus       791 l~~~Vv~~~~lap~i~~L~l~aP~i----A~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e---~g~It~i~rvV-  862 (1028)
T PRK06567        791 LTSRVNKINILDDKTFELIIHSPLA----AKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE---KGLISFIVFEV-  862 (1028)
T ss_pred             hceEEEEEEEecCCEEEEEEeCcch----hhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC---CCEEEEEEEEE-
Confidence            3689999999999999999986542    24689999999998532     25678999998764   78999999999 


Q ss_pred             CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEE
Q 023223          132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY  203 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~  203 (285)
                      |..|+.|+++++||.+.+.||+|++|.+.      ..+++++||||+|++|   +.+++.+  .+.+|..+.
T Consensus       863 GkgT~~Ls~l~~Gd~v~v~GPLG~pF~i~------~~k~vLLVgGGVGiAp---Lak~Lk~--~G~~V~~~~  923 (1028)
T PRK06567        863 GKSTSLCKTLSENEKVVLMGPTGSPLEIP------QNKKIVIVDFEVGNIG---LLKVLKE--NNNEVIFVT  923 (1028)
T ss_pred             ChHHHHHhcCCCCCEEEEEcccCCCCCCC------CCCeEEEEEccccHHH---HHHHHHH--CCCeEEEEE
Confidence            99999999999999999999999999764      2468999999999997   4455532  344555555

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=99.67  E-value=4.7e-16  Score=141.62  Aligned_cols=163  Identities=24%  Similarity=0.417  Sum_probs=124.5

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEE
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL  172 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~v  172 (285)
                      -+||.|||+|.|.    .-.++++|-.+.          |-+|+||++|++|++|.+.---|. +.++.    +...+++
T Consensus       366 IrPR~fSIas~~~----~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~-l~~p~----~~~~PlI  436 (574)
T KOG1159|consen  366 IRPRAFSIASSPG----AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGT-LYFPS----DLNKPLI  436 (574)
T ss_pred             cccceeeeccCCC----CCceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCc-cccCC----CCCCCeE
Confidence            3578999999998    555998886653          789999999999999998776665 55542    3478999


Q ss_pred             EEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHH
Q 023223          173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSR  251 (285)
Q Consensus       173 liAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~  251 (285)
                      ||+.||||||+++++.+..- +......||||+|+.+ |++|.++..++....  .+..+|+.++    .+-|||..+.+
T Consensus       437 mVGPGTGvAPfRa~i~er~~-q~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~--~~~AFSRDqe----~kvYVQh~i~e  509 (574)
T KOG1159|consen  437 MVGPGTGVAPFRALIQERIY-QGDKENVLFFGCRNKDKDFLYEDEWTELNKRA--FHTAFSRDQE----QKVYVQHKIRE  509 (574)
T ss_pred             EEcCCCCcccHHHHHHHHHh-hccCCceEEEecccCCccccccchhhhhhcch--hhhhcccccc----cceeHHHHHHH
Confidence            99999999999999999764 3344458899999877 889998766665543  3446777654    46788888776


Q ss_pred             hh----hcCCCCCcEEEEECch-hHHHHHHHHHHh
Q 023223          252 AK----KIFNPQGTGVVLCGQK-QMAEVCYCFCLE  281 (285)
Q Consensus       252 ~~----~~~~~~~~~vyiCGp~-~m~~~~~~~L~~  281 (285)
                      ..    ......+..+|+||+. .|-+++.++|.+
T Consensus       510 ~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~e  544 (574)
T KOG1159|consen  510 NGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIE  544 (574)
T ss_pred             hhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHH
Confidence            32    2334467899999996 788888888765

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.50  E-value=7.9e-14  Score=112.90  Aligned_cols=112  Identities=18%  Similarity=0.296  Sum_probs=72.8

Q ss_pred             CCeEEEEEcCcchhHHHHHHHHhhccC-----CCCcEEEEEccCCcccc-ccHHHHHHHHH---C-CCEEEEEeeCCCCC
Q 023223          168 YPTVLIFATGSGISPIRSLIESGFSSK-----ERSDVRLYYGARNLKRM-AYQDKFKEWES---S-GVKIVPVLSQPDGN  237 (285)
Q Consensus       168 ~~~~vliAgGtGIaP~~sil~~~~~~~-----~~~~v~l~~~~r~~~~~-~~~~~l~~l~~---~-~~~v~~~~s~~~~~  237 (285)
                      +++++|||||+||||+++++++++...     ...+|+|+|.+|+.+++ +|.++|.++..   . ++++.+++++....
T Consensus         1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~   80 (156)
T PF08030_consen    1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA   80 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred             CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence            468999999999999999999998533     36889999999999987 77866655544   3 78888888764321


Q ss_pred             C-------------------------------Cccccccc--hHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH
Q 023223          238 W-------------------------------SGETGYVQ--AAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC  279 (285)
Q Consensus       238 ~-------------------------------~~~~g~v~--~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L  279 (285)
                      .                               .-..||.+  +.+.+...........|++|||++|++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v  155 (156)
T PF08030_consen   81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV  155 (156)
T ss_dssp             ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred             ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence            1                               01122221  222221123345678999999999999998875

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=99.36  E-value=1.9e-10  Score=99.39  Aligned_cols=202  Identities=11%  Similarity=0.104  Sum_probs=144.4

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCC-CcEEEEEEcCC----------------------Ceeeeeee
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRA-GQYLQLRVVDV----------------------GKPTFLAI  110 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~p-GQ~v~l~~~~~----------------------~~~~~~si  110 (285)
                      ...+.++|..++++++++.+++|..++-...  ....+ +|||.|.++..                      ...|.|||
T Consensus        15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f--~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTi   92 (265)
T COG2375          15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGF--ASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTI   92 (265)
T ss_pred             ccceEEEEEEEEecCCCeEEEEEeccccccc--ccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCccccee
Confidence            4567899999999999999999997654322  12344 45999999843                      11577999


Q ss_pred             cCCCCCCCCCCeEEEEEEEe--CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHH
Q 023223          111 ASPPSFASASGAFEFLVKSV--AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE  188 (285)
Q Consensus       111 ~s~p~~~~~~~~l~l~Vk~~--~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~  188 (285)
                      .+...+   .+++.+-+-.+  .|..+.|..++++||+|.|.||.|..+ .     +...+.++||+--+++-.|..||+
T Consensus        93 R~~d~~---~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~-p-----~~~~~~~lLigDetAlPAIa~iLE  163 (265)
T COG2375          93 RAVDAA---AGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLV-P-----PEAADWYLLIGDETALPAIARILE  163 (265)
T ss_pred             eeeccc---ccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCC-C-----CCCcceEEEeccccchHHHHHHHH
Confidence            876543   67776666665  368999999999999999999999833 2     247889999999999999999999


Q ss_pred             HhhccCCCCcEEEEEccCCccccccHHHHHHHHH-CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCC-CCcEEEEE
Q 023223          189 SGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLC  266 (285)
Q Consensus       189 ~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~vyiC  266 (285)
                      ++   ........+..+.+..+.      ..+.. .++++.++......    ....++++..+   ...+ .+..++|.
T Consensus       164 ~l---p~~~~~~a~lev~d~ad~------~~l~~~~~l~~~Wl~r~~~~----~~~ll~~a~~~---~~~P~~~~~vwia  227 (265)
T COG2375         164 TL---PADTPAEAFLEVDDAADR------DELPSPDDLELEWLARDDAP----TEQLLAAALAQ---AALPAGDYYVWIA  227 (265)
T ss_pred             hC---CCCCceEEEEEeCChHHh------hccCCCCceeEEEecCCCcc----chHHHHHHHhc---ccCCCCceEEEEe
Confidence            97   444555777777776653      12222 35666665543221    11223333333   2222 34799999


Q ss_pred             CchhHHHHHHHHHHhc
Q 023223          267 GQKQMAEVCYCFCLEF  282 (285)
Q Consensus       267 Gp~~m~~~~~~~L~~~  282 (285)
                      |..++++.+++.|++.
T Consensus       228 gE~~~v~~~Rk~L~~e  243 (265)
T COG2375         228 GEASAVKAIRKFLRNE  243 (265)
T ss_pred             ccHHHHHHHHHHHhhh
Confidence            9999999999999886

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.06  E-value=1.6e-11  Score=92.98  Aligned_cols=88  Identities=19%  Similarity=0.282  Sum_probs=6.2

Q ss_pred             eEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEEeCCcc
Q 023223           59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSVAGST  134 (285)
Q Consensus        59 ~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~~~G~~  134 (285)
                      .++.+++.+.++++++++..+...    +.|+||||+.|.++...    +.++|||++.|.    ++.++|+||.. |+.
T Consensus         4 ~~~~~v~~~~~~~v~i~i~~~~~~----~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~----~~~i~l~ik~~-g~~   74 (105)
T PF08022_consen    4 VRIASVELLPDDVVEITIPKPSSP----FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE----DNSITLIIKAR-GGW   74 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEcCCCEEEEEEECCCCC----CCCCCceEEEEEEcCcCcCcccccccEeeccCC----CCEEEEEEEeC-CCc
Confidence            467788888899999999865431    68999999999999643    788999999997    88999999998 777


Q ss_pred             hHHhhCC--------CCCCEEEEEeecCC
Q 023223          135 AEVLCGL--------KKGDVVEISQVMGR  155 (285)
Q Consensus       135 s~~L~~l--------~~Gd~v~i~gP~G~  155 (285)
                      |+.|.+.        ..+-++.|.||||.
T Consensus        75 T~~L~~~~~~~~~~~~~~~~v~idGPYG~  103 (105)
T PF08022_consen   75 TKRLYEHLSESPSKQGNRLRVFIDGPYGA  103 (105)
T ss_dssp             ----------------------TTSTTSH
T ss_pred             hHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence            7766642        23457888999995

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=98.68  E-value=8.1e-08  Score=74.02  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=60.0

Q ss_pred             EEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC-----------------------eeeeeeecCCCCC
Q 023223           60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-----------------------KPTFLAIASPPSF  116 (285)
Q Consensus        60 ~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~-----------------------~~~~~si~s~p~~  116 (285)
                      +|++++.+++++++++|..++-..+  ....+|||+.|.++..+                       ..|.||+.+....
T Consensus         1 ~V~~~~~ltP~~~Rv~l~g~~l~~~--~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~   78 (117)
T PF08021_consen    1 TVVRVERLTPHMRRVTLGGEDLAGF--PSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPE   78 (117)
T ss_dssp             EEEEEEEEETTEEEEEEESGGGTT----S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT
T ss_pred             CEEEEEECCCCEEEEEEECCCcccC--ccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCC
Confidence            5899999999999999996543322  22579999999998431                       3577999887654


Q ss_pred             CCCCCeEEEEEEEeC--CcchHHhhCCCCCCEEEEEeecCC
Q 023223          117 ASASGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGR  155 (285)
Q Consensus       117 ~~~~~~l~l~Vk~~~--G~~s~~L~~l~~Gd~v~i~gP~G~  155 (285)
                         .+++.|-+-.+.  |..+.|..++++||+|.|.||.|.
T Consensus        79 ---~~~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~  116 (117)
T PF08021_consen   79 ---TGELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGS  116 (117)
T ss_dssp             -----EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE--
T ss_pred             ---CCEEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCC
Confidence               788988887775  579999999999999999999987

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins

Probab=96.49  E-value=0.024  Score=43.63  Aligned_cols=103  Identities=10%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             CeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchH
Q 023223          169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA  248 (285)
Q Consensus       169 ~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~  248 (285)
                      +.++|++--|++..+..|++++   ....+++.+.-+.+..+...   |..  ..+++++++.....   ......+.+.
T Consensus         2 ~~~ll~gDeTalPAi~~iLe~l---p~~~~~~v~iev~~~~d~~~---l~~--~~~~~v~wv~r~~~---~~~~~~l~~a   70 (119)
T PF04954_consen    2 DRYLLVGDETALPAIARILEAL---PADAPGTVFIEVPDEADRQP---LPA--PAGVEVTWVPRDGP---AAQGSALADA   70 (119)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHS----TT-EEEEEEEESSGGG------------TEEEEEEEE-SS-----TT-HHHHHH
T ss_pred             ceEEEEeccccHHHHHHHHHhC---CCCCeEEEEEEECChHhccc---CCC--CCCCEEEEEeCCCC---CchHHHHHHH
Confidence            5789999999999999999997   56677888888877776332   222  34677777666543   1111223333


Q ss_pred             HHHhhhcCCCCCcEEEEECchhHHHHHHHHHH-hcCC
Q 023223          249 FSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL-EFSA  284 (285)
Q Consensus       249 ~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~-~~Gv  284 (285)
                      +..  ......+..++++|...+++.+++.|+ ++|+
T Consensus        71 l~~--~~~~~~~~~vW~AgE~~~~r~lR~~l~~~~g~  105 (119)
T PF04954_consen   71 LRD--LPLPAGDGYVWVAGEASAVRALRRHLREERGL  105 (119)
T ss_dssp             HTT--S---SS-EEEEEEEEHHHHHHHHHHHHHH---
T ss_pred             HHH--hhccCCCeEEEEEecHHHHHHHHHHHHHhhCC
Confidence            222  111246889999999999999999998 5454

; PDB: 2GPJ_A.

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=85.10  E-value=1.2  Score=44.92  Aligned_cols=40  Identities=30%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             ccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          244 YVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      ..++.+.+.......++..|.+|||+.|.+++.+.|+..+
T Consensus       659 ~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~  698 (722)
T PLN02844        659 NFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKS  698 (722)
T ss_pred             CHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcc
Confidence            4455554432233457899999999999999999988765

>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase

Probab=80.70  E-value=1.7  Score=36.97  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=17.1

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      .++|+|||+|+|..  .++.++|+|..+.
T Consensus       177 l~PR~YSIsSS~~~--~p~~v~ltv~vv~  203 (219)
T PF00667_consen  177 LQPRYYSISSSPLV--HPNKVHLTVSVVE  203 (219)
T ss_dssp             ---EEEEB-S-TTT--STTEEEEEEEE-E
T ss_pred             CCCcceeecccccC--CCCEEEEEEEEEE
Confidence            67899999999864  2688999998764

Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
1gaq_A	314	Crystal Structure Of The Complex Between Ferredoxin		2e-08
3vo1_A	314	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		5e-08
1qfj_A	232	Crystal Structure Of Nad(p)h:flavin Oxidoreductase		9e-08
3vo2_A	310	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		1e-07
2b5o_A	402	Ferredoxin-nadp Reductase Length = 402		2e-05
2r6h_A	290	Crystal Structure Of The Domain Comprising The Nad		1e-04
1sm4_A	296	Crystal Structure Analysis Of The Ferredoxin-Nadp+		3e-04
1qga_A	308	Pea Fnr Y308w Mutant In Complex With Nadp+ Length =		4e-04
1qg0_A	308	Wild-type Pea Fnr Length = 308		4e-04
4af6_A	308	Pea Fnr L268v Mutant Length = 308		5e-04
3mhp_A	296	Fnr-Recruitment To The Thylakoid Length = 296		5e-04
1qfy_A	308	Pea Fnr Y308s Mutant In Complex With Nadp+ Length =		5e-04
4af7_A	308	Pea Fnr C266m Mutant Length = 308		5e-04
1fnb_A	314	Refined Crystal Structure Of Spinach Ferredoxin Red		6e-04

>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC L+ GD V+I+  +G+    + + P D   T+++ ATG+GI+P RS +  
Sbjct: 128 VKGVCSNFLCDLQPGDNVQITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 183
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQDKF---KEWESSGVKIVPVLSQPDGNWSG 240
            F  K   D +      L+ G      + Y+++F   KE      ++   +S+   N +G
Sbjct: 184 MFFEK-HDDYKFNGLGWLFLGVPTSSSLLYKEEFGKMKERAPENFRVDYAVSREQTNAAG 242
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
           E  Y+Q   +  K    ++     T V +CG K M
Sbjct: 243 ERMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGM 277

>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   T+++ ATG+GI+P RS +  
Sbjct: 128 VKGVCSNFLCDLKPGAEVKITGPVGK----EMLMPKDPNATIIMLATGTGIAPFRSFLWK 183
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQ---DKFKEWESSGVKIVPVLSQPDGNWSG 240
            F  +E  D +      L+ G      + Y+   +K KE      ++   +S+   N +G
Sbjct: 184 MF-FEEHEDYKYTGLAWLFLGVPTSDTLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAG 242
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284
           E  Y+Q   +  K    ++     T V +CG K M +      L+ +A
Sbjct: 243 EKMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIMLDLAA 290

>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From Escherichia Coli Length = 232

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 162 IQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK--E 219
           ++  +E P +LI A G+G S  RS++ +  +     D+ +Y+G R  + +    + +   
Sbjct: 97  LRDDEERPMILI-AGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALS 155
Query: 220 WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT----GVVLCGQKQMAEVC 275
            +  G+++VPV+ QP+  W G TG V  A      +    GT     + + G+ +MA++ 
Sbjct: 156 LKHPGLQVVPVVEQPEAGWRGRTGTVLTA------VLQDHGTLAEHDIYIAGRFEMAKIA 209
Query: 276 Y-CFCLEFSA 284
              FC E +A
Sbjct: 210 RDLFCSERNA 219

>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++ ATG+GI+P RS +  
Sbjct: 124 VKGVCSNFLCDLKPGADVKITGPVGK----EMLMPKDPNATVIMLATGTGIAPFRSFLWK 179
Query: 190 GFSSKERSDVR------LYYGARNLKRMAYQ---DKFKEWESSGVKIVPVLSQPDGNWSG 240
            F  +E  D +      L+ G      + Y+   +K KE      ++   +S+   N +G
Sbjct: 180 MF-LEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAG 238
Query: 241 ETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA 284
           E  Y+Q   +  +    ++     T V +CG K M +      L  +A
Sbjct: 239 EKMYIQTRMAEYREELWELLKKDNTYVYMCGLKGMEKGIDDIMLNLAA 286

>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 128 KSVAGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSL 186
           ++V G  +  LC L  G D V+I+  +G+    + + P DE  TV++ ATG+GI+P R+ 
Sbjct: 213 ETVYGVCSTYLCNLPVGTDDVKITGPVGK----EMLLPDDEDATVVMLATGTGIAPFRAF 268
Query: 187 IESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
           +   F  +      +    L +G      + Y+D F++  +      ++   +S+     
Sbjct: 269 LWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTA 328
Query: 239 SGETGYVQAAFSR-AKKIF---NPQGTGVVLCGQKQM 271
            G   YVQ+  S  A ++F       T V +CG K M
Sbjct: 329 DGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGM 365

>pdb|2R6H|A Chain A, Crystal Structure Of The Domain Comprising The Nad Binding And The Fad Binding Regions Of The Nadh:ubiquinone Oxidoreductase, Na Translocating, F Subunit From Porphyromonas Gingivalis Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G ++  +  LK GD V  S   G       IQ  D     L    G+G +P+R+ I   F
Sbjct: 126 GISSSYIFSLKPGDKVXXSGPYGDF----HIQDTD--AEXLYIGGGAGXAPLRAQILHLF 179
Query: 192 SS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLS--QPDGNWSGETGYVQ 246
            + K    V  +YGAR+   + Y++ F+E E      K    LS  QP+ NW+G  G++ 
Sbjct: 180 RTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIH 239

>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           + V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +
Sbjct: 108 EEVKGVCSNFLCDLKPGADVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFL 163
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 164 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNE 222
Query: 239 SGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAE 273
            GE  Y+Q   ++  +    +     T V +CG K M +
Sbjct: 223 KGEKMYIQTRMAQYAEELWTLLKKDNTFVYMCGLKGMEQ 261

>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 178 MFFEKHED 185

>pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 178 MFFEKHED 185

>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 178 MFFEKHED 185

>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 109 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 164
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 165 MFFEKHED 172

>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 178 MFFEKHED 185

>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 130 VAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189
           V G  +  LC LK G  V+I+  +G+    + + P D   TV++  TG+GI+P RS +  
Sbjct: 122 VKGVCSNFLCDLKPGSEVKITGPVGK----EMLMPKDPNATVIMLGTGTGIAPFRSFLWK 177
Query: 190 GFSSKERS 197
            F  K   
Sbjct: 178 MFFEKHED 185

>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 128 KSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187
           +++ G  +  LC LK G  V+++  +G+    + + P D   T+++  TG+GI+P RS +
Sbjct: 126 ETIKGVCSNFLCDLKPGAEVKLTGPVGK----EMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 188 ESGFSSKERSDVR------LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNW 238
              F  K   D +      L+ G      + Y+++F++ +       ++   +S+   N 
Sbjct: 182 WKMFFEK-HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNE 240
Query: 239 SGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
            GE  Y+Q   ++      ++     T V +CG K M
Sbjct: 241 KGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGM 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	4e-34
1tvc_A	250	Methane monooxygenase component C, methane monooxy	7e-31
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	5e-27
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	3e-25
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	3e-22
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	1e-21
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	7e-20
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	7e-19
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	1e-18
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	2e-17
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	1e-15
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	7e-14
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	4e-13
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	2e-11
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	6e-09
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	1e-08
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	1e-08
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	2e-08
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	3e-08
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	1e-07
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	2e-07
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	3e-06
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	8e-06
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score =  122 bits (309), Expect = 4e-34
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 54  TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASP 113
           T  +   +  +    ++++ V I    A        RAGQYL + + +  K  F ++AS 
Sbjct: 1   TTLSCK-VTSVEAITDTVYRVRIVPDAAFSF-----RAGQYLMVVMDERDKRPF-SMAST 53

Query: 114 PSFASASGAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV 171
           P      G  E  + +   +     V+  + K   + +    G  +    ++  +E P +
Sbjct: 54  PD---EKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAW----LRDDEERPMI 106

Query: 172 LIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVP 229
           LI A G+G S  RS++ +  +     D+ +Y+G R  + +    + +       G+++VP
Sbjct: 107 LI-AGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVP 165

Query: 230 VLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC 275
           V+ QP+  W G TG V  A    +         + + G+ +MA++ 
Sbjct: 166 VVEQPEAGWRGRTGTVLTAV--LQDHGTLAEHDIYIAGRFEMAKIA 209

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score =  114 bits (288), Expect = 7e-31
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 90  RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG---STAEVLCGLKKGDV 146
             GQ++ L +         + A+ P+     G  EFL++ +     S   +    + G V
Sbjct: 45  EPGQFMDLTIPGTDVSRSYSPANLPN---PEGRLEFLIRVLPEGRFSDY-LRNDARVGQV 100

Query: 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206
           + +   +G        +     P   + A G+G++P+ S++         ++ R+Y+G  
Sbjct: 101 LSVKGPLGVFGL----KERGMAPRYFV-AGGTGLAPVVSMVRQMQEWTAPNETRIYFGVN 155

Query: 207 NLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264
               + Y D+ K  E S   + +   +  P G+W GE G    A  R     +     + 
Sbjct: 156 TEPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDAL-REDLESSDANPDIY 214

Query: 265 LCG 267
           LCG
Sbjct: 215 LCG 217

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score =  106 bits (267), Expect = 5e-27
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 19/225 (8%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           LA +   ++S     I + D          AGQY+ + +    +    + +S P     +
Sbjct: 113 LARVENLSDSTITFDIQLDDGQPDIHFL--AGQYVNVTLPGTTETRSYSFSSQPG----N 166

Query: 121 GAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178
               F+V++V     +  +    K GD +  +   G  +         + P +++ A G+
Sbjct: 167 RLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYL-----RDVKRPVLML-AGGT 220

Query: 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDG 236
           GI+P  S+++          VRL +G      +   ++    +      +   V++  + 
Sbjct: 221 GIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAES 280

Query: 237 NWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE 281
                 GYV           N     V LCG   M E    +   
Sbjct: 281 -QHERKGYVTGHIEYD--WLNGGEVDVYLCGPVPMVEAVRSWLDT 322

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 30/230 (13%)

Query: 56  WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLA--IASP 113
           W    + ++    ++LF +++     P        AGQ+ +L +   G+    A    + 
Sbjct: 4   WVTGKVTKVQNWTDALFSLTVHAPVLP------FTAGQFTKLGLEIDGERVQRAYSYVNS 57

Query: 114 PSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
           P     +   EF + +V     S    L  LK GD V++       F +D +   +    
Sbjct: 58  PD----NPDLEFYLVTVPDGKLSPR--LAALKPGDEVQVVSEAAGFFVLDEVPHCETL-- 109

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES---SGVKI 227
             + ATG+ I P  S++  G       ++ L + AR    ++Y    +E E      ++I
Sbjct: 110 -WMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRI 168

Query: 228 VPVLSQPDGNWSGETGYVQAA------FSRAKKIFNPQGTGVVLCGQKQM 271
             V+S+        TG + A        S      N + + V+LCG  QM
Sbjct: 169 QTVVSRET-AAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQM 217

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 92.1 bits (229), Expect = 3e-22
 Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 37/237 (15%)

Query: 56  WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLA--IASP 113
                +  +    ++LF      +          + GQ++ + +   G+P   A  IASP
Sbjct: 3   LYTERVLSVHHWNDTLFSFKTTRNPGLRF-----KTGQFVMIGLEVDGRPLMRAYSIASP 57

Query: 114 PSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170
                     EF    V     ++   L  LK+GD + +S+        D + P      
Sbjct: 58  NY----EEHLEFFSIKVPDGPLTSR--LQHLKEGDELMVSRKPTGTLVHDDLLPGKHL-- 109

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK----------FKEW 220
             + +TG+G++P  S+I+   + +    V L +G R +  +AY D           F + 
Sbjct: 110 -YLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQ 168

Query: 221 ESSGVKIVPVLSQPDGNWSG------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
               +   P++++      G       +G +           NPQ    ++CG   M
Sbjct: 169 VKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDI--GLPPMNPQDDRAMICGSPSM 223

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 90.3 bits (224), Expect = 1e-21
 Identities = 43/249 (17%), Positives = 86/249 (34%), Gaps = 38/249 (15%)

Query: 45  AAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-G 103
               +     +     +  +    ++LF   +             R+G+++ + ++D  G
Sbjct: 5   ETTPIAPAKVLPDAQTVTSVRHWTDTLFSFRVTRPQTLRF-----RSGEFVMIGLLDDNG 59

Query: 104 KPTFLA--IASPPSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGRGFA 158
           KP   A  IASP          EF    V     ++   L  +K G+ + +         
Sbjct: 60  KPIMRAYSIASPAW----DEELEFYSIKVPDGPLTSR--LQHIKVGEQIILRPKPVGTLV 113

Query: 159 VDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD--- 215
           +D + P      +   ATG+GI+P  SL+    + ++  +V + +  R +  + Y     
Sbjct: 114 IDALLPGK---RLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVAELEYGRQLV 170

Query: 216 -------KFKEWESSGVKIVPVLSQPDGNWSG------ETGYVQAAFSRAKKIFNPQGTG 262
                     E     +K  P  ++ + +  G       +G V      A    NP+   
Sbjct: 171 EALQEDPLIGELVEGKLKYYPTTTREEFHHMGRITDNLASGKVFEDLGIAP--MNPETDR 228

Query: 263 VVLCGQKQM 271
            ++CG    
Sbjct: 229 AMVCGSLAF 237

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score = 85.3 bits (212), Expect = 7e-20
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 92  GQYLQLRVVDVGKPTFLA--IASPPSFASASGAFEFLVKSVAGSTA-EVLCGLKKGDVVE 148
           GQ++ ++    GK  +      S        G F+ ++K        + +  L  GD ++
Sbjct: 45  GQHMSVKATVDGKEIYRPYTPVSSDD---EKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQ 101

Query: 149 ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARN 207
           +    G+ F       P+    + + A G+GI+P+  +  +   + + ++ + L +   N
Sbjct: 102 VRGPKGQ-FDYK----PNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVN 156

Query: 208 LKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVV 264
              +  + +  +     S  K+  VL+ P   W+G  G+V A   + +    P     V+
Sbjct: 157 EDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIK-QHFSPPSSDIKVM 215

Query: 265 LCG 267
           +CG
Sbjct: 216 MCG 218

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 83.4 bits (206), Expect = 7e-19
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191
           G ++  +  LK GD V +S   G     D          +L    G+G++P+R+ I   F
Sbjct: 126 GISSSYIFSLKPGDKVMMSGPYGDFHIQDTDAE------MLYIGGGAGMAPLRAQILHLF 179

Query: 192 SSKERS-DVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLS--QPDGNWSGETGYVQ 246
            + +    V  +YGAR+   + Y++ F+E E      K    LS  QP+ NW+G  G++ 
Sbjct: 180 RTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIH 239

Query: 247 AAFSRA--KKIFNPQGTGVVLCG 267
                   K    P+     +CG
Sbjct: 240 QVIYDNYLKDHDAPEDIEYYMCG 262

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 37/252 (14%)

Query: 41  LATLAAAAVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV 100
           L     A V +  + +    +  +    ++LF  +     A          G++  + + 
Sbjct: 4   LWGPLYAPVSESMSKFDTATVLSVHHWTDTLFSFTCTRDQALRF-----NNGEFTMVGLE 58

Query: 101 DVGKPTFLA--IASPPSFASASGAFEFLVKSVAG---STAEVLCGLKKGDVVEISQVMGR 155
             GKP   A  I SP          EF    V     ++   L  LK GD V I +    
Sbjct: 59  VDGKPLTRAYSIVSPNY----EEHLEFFSIKVQNGPLTSR--LQHLKVGDPVLIGKKPT- 111

Query: 156 GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215
           G  V     P +  T+ + +TG+G++P  S+I      +    V L +  R    +AY D
Sbjct: 112 GTLVADNLLPGK--TLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMD 169

Query: 216 KFKEWESS----------GVKIVPVLSQPDGNWSG------ETGYVQAAFSRAKKIFNPQ 259
             K                +   P +++ +    G       +G +          F+P+
Sbjct: 170 YIKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLD--MPPFSPE 227

Query: 260 GTGVVLCGQKQM 271
              V+LCG   M
Sbjct: 228 QDRVMLCGSTAM 239

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 47/246 (19%), Positives = 83/246 (33%), Gaps = 30/246 (12%)

Query: 47  AAVRQDTTVWTPTPLAEISPAAE--SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK 104
           A    +        L      +    LF  S+   D           G+++ +     GK
Sbjct: 3   APALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQV----LGLPIGKHIFVCATIEGK 58

Query: 105 PTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMG 154
               A  +P S     G F+ LVK             G   + L  L  G  +++   +G
Sbjct: 59  LCMRAY-TPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLG 117

Query: 155 R----GFAVDRIQP-PDEYPTVLIFATGSGISPIRSLIESGFS--SKERSDVRLYYGARN 207
                G     I         + +   GSGI+P+  +I++      ++ +++ L Y  R 
Sbjct: 118 HVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRT 177

Query: 208 LKRMAYQDKFKEWESS---GVKIVPVLSQ---PDGNWSGETGYVQAAFSRAKKIFNPQGT 261
              +  +D+   W +     +K+  V+ Q   P+  W    G+V  A  R         T
Sbjct: 178 EDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDT 237

Query: 262 GVVLCG 267
             + CG
Sbjct: 238 LALACG 243

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 30/242 (12%)

Query: 52  DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIA 111
              +  P  L +    +         +     I       GQ++ L     G        
Sbjct: 12  SPDIKYPLRLIDREIISHDTRRFRFALPSPQHI--LGLPVGQHIYLSARIDGNLVVRPY- 68

Query: 112 SPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGDVVEISQVMGR------ 155
           +P S     G  + ++K             G  ++ L  ++ GD +E     G       
Sbjct: 69  TPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGK 128

Query: 156 -GFAVDRIQ----PPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLK 209
             FA+   +          +V + A G+GI+P+  +I +     +  +   L +  +  K
Sbjct: 129 GKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEK 188

Query: 210 RMAYQDKFKEWE---SSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVL 265
            +  + + +E     S+  K+   L +    W    G+V     R   +  P +   V++
Sbjct: 189 DILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIR-DHLPPPEEEPLVLM 247

Query: 266 CG 267
           CG
Sbjct: 248 CG 249

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262

 Score = 68.8 bits (169), Expect = 7e-14
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 80  DAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS---GAFEFLVKSVAGSTA- 135
               +       GQ+L L V +      L    P S +S          L +    +T  
Sbjct: 26  KGTLVDE-MDLPGQFLHLAVPNGA--MLLRR--PISISSWDKRAKTCTILYRIGDETTGT 80

Query: 136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE 195
             L  L+ G  V++   +G GF V  +   D    +LI   G G+ P+  L +     K 
Sbjct: 81  YKLSKLESGAKVDVMGPLGNGFPVAEVTSTD---KILIIGGGIGVPPLYELAKQL--EKT 135

Query: 196 RSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255
              + +  G  +      +++F   ++  +KI       DG   G  G+V    +     
Sbjct: 136 GCQMTILLGFASENVKILENEFSNLKNVTLKIATD----DG-SYGTKGHVGMLMNE---- 186

Query: 256 FNPQGTGVVLCGQKQM 271
            + +   +  CG   M
Sbjct: 187 IDFEVDALYTCGAPAM 202

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 90  RAGQYLQLRVVDVGKPTFLA----IASPPSFASASGAFEFLVKSV-AGSTAEVLCG-LKK 143
           R GQYL + +   G P        +   P        +   VK    G  +  L      
Sbjct: 184 RPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKREEGGQVSNWLHNHANV 239

Query: 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY 203
           GDVV++    G  F +      D+ P  LI + G G +P+ +++++   +   + V  ++
Sbjct: 240 GDVVKLVAPAGD-FFMA---VADDTPVTLI-SAGVGQTPMLAMLDTLAKAGHTAQVNWFH 294

Query: 204 GARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAF---SRAKKIFNP 258
            A N    A+ D+ KE   S           QP      +  +        S+ +  F+ 
Sbjct: 295 AAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSD 354

Query: 259 QGTGVVLCG 267
                 LCG
Sbjct: 355 PTMQFYLCG 363

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 26/194 (13%)

Query: 90  RAGQYLQLRVVDVGKPTFLA----IASPPSFASASGAFEFLVKSV------AGSTAEVLC 139
             GQY  + +              ++  P+       +   VK         G  + +L 
Sbjct: 186 EPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKREGGGPQPPGYVSNLLH 241

Query: 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD 198
             +  GD V+++   G  F +D      + P VLI + G G++P+ S+++    +  R  
Sbjct: 242 DHVNVGDQVKLAAPYG-SFHID---VDAKTPIVLI-SGGVGLTPMVSMLKVALQAPPR-Q 295

Query: 199 VRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP-DGNWSGETGYVQAAFSRA--K 253
           V   +GARN    A +D+ +E   +   + +     QP   +  G              +
Sbjct: 296 VVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIE 355

Query: 254 KIFNPQGTGVVLCG 267
           K          +CG
Sbjct: 356 KSILLPDADYYICG 369

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           +C LK GD V ++   G+ F    +   D    ++  ATG+GI+P   + E     K   
Sbjct: 138 MCDLKPGDEVTMTGPSGKKF---LLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIK 194

Query: 198 ---DVRLYYGARNLKRMAYQDKFKEWESSGV--KIVPVLS-QPDGNWSGETGYVQ-AAFS 250
              ++ L YGA     +   D  K  ES     K++  +S +   ++ G   Y+      
Sbjct: 195 FTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRVRE 254

Query: 251 RAKKIFN--PQGTGVVLCGQ-KQMAE 273
           +A+ +      G    +CG  K M +
Sbjct: 255 QAEAVKKILNGGGRFYICGGPKGMEK 280

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 20/152 (13%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           L  ++ G  V+I+  +G+   +    P D    V++ A G+GI+P+R+ +   F   ER+
Sbjct: 122 LTHIEPGSEVKITGPVGKEMLL----PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERA 177

Query: 198 DVR---------LYYGARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYV 245
                       L +G      + Y+++ +E +       ++   +S+   N  G   Y+
Sbjct: 178 ANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYI 237

Query: 246 Q-AAFSRAKKIFN---PQGTGVVLCGQKQMAE 273
           Q      A +++     Q T   +CG   M E
Sbjct: 238 QDRVAEHADQLWQLIKNQKTHTYICGPPPMEE 269

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 90  RAGQYLQLRVVDVGKPTFLA----IASPPSFASASGAFEFLVKSVAGSTAE------VLC 139
           + GQY+ + V   G          ++   +       +   VK     +         L 
Sbjct: 35  QPGQYIGIEVTPEGSDYREIRQYSLSHASN----GREYRISVKREGVGSDNPGLVSHYLH 90

Query: 140 -GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD 198
             +K GD V++    G  F         E P VLI + G G +P+++++ +     +   
Sbjct: 91  NNVKVGDSVKLYAPAGD-FFYV----ERERPVVLI-SAGVGATPMQAILHTLAKQNKS-G 143

Query: 199 VRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA 248
           V   Y   + K   +  +  +  +    +  V  + +       G +Q A
Sbjct: 144 VTYLYACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDVLQGEMQLA 193

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 24/155 (15%)

Query: 138 LCGLKKGDVVEISQVMGR--GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE 195
           +  LK  D +    + G    F +           + I ATG+GISP  S ++  F+  +
Sbjct: 142 IKNLKINDDI---YLTGAHGYFNLPNDAIQKNTNFIFI-ATGTGISPYISFLKKLFAYDK 197

Query: 196 RSDVR----------LYYGARNLKRMAYQDKFKEWESSG---VKIVPVLSQPDGNWSGET 242
            +             +YYG  N   + Y ++ + ++      + I  V S    N    +
Sbjct: 198 NNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSY-KQNSDATS 256

Query: 243 GYVQ-AAFSRAKKIFN---PQGTGVVLCGQKQMAE 273
            YVQ   + R  +  N        + +CG+K +  
Sbjct: 257 FYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRY 291

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 16/148 (10%)

Query: 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           LC LK G  V+++  +G+   +    P D   T+++  TG+GI+P RS +   F  K   
Sbjct: 136 LCDLKPGAEVKLTGPVGKEMLM----PKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDD 191

Query: 198 D-----VRLYYGARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYVQ-AA 248
                   L+ G      + Y+++F++ +       ++   +S+   N  GE  Y+Q   
Sbjct: 192 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRM 251

Query: 249 FSRAKKIFN---PQGTGVVLCGQKQMAE 273
              A +++       T V +CG K M +
Sbjct: 252 AQYAVELWEMLKKDNTYVYMCGLKGMEK 279

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 17/147 (11%)

Query: 141 LKKGDVVEISQVM---GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197
           +K+GD   +  V    G         P +++  +L     +GI  +  + ++    +E  
Sbjct: 1   MKEGD--SLLNVAGPLGTPV------PMEKFGKILAIGAYTGIVEVYPIAKA---WQEIG 49

Query: 198 DVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRA-KKIF 256
           +            +  +++ ++  +  +     L+     +      V        +++ 
Sbjct: 50  NDVTTLHVTFEPMVILKEELEKAVTRHIVEPVPLNPNQD-FLANMKNVSQRLKEKVRELL 108

Query: 257 NPQGTGVVL-CGQKQMAEVCYCFCLEF 282
             +   +V   G     +  +    E+
Sbjct: 109 ESEDWDLVFMVGPVGDQKQVFEVVKEY 135

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 84  IASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKK 143
           IAS+        +      G+   L +     +   +G  +     V  S    LC  K 
Sbjct: 90  IAST--------RYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVC-SN--FLCNSKP 138

Query: 144 GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS-----D 198
           GD ++++   G+      +   D   T ++ ATG+G++P R  +   F     +      
Sbjct: 139 GDKIQLTGPSGKIM---LLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGL 195

Query: 199 VRLYYGARNLKRMAYQDKFKEWESSGV---KIVPVLSQPDGNWSGETGYVQ-AAFSRAKK 254
             L+ G  N   + Y ++F  +        +    LS+   N SG   YVQ      + +
Sbjct: 196 AWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDE 255

Query: 255 IFN--PQGTGVVLCGQKQMAE 273
           IF     G  +  CG K M  
Sbjct: 256 IFKLLDGGAHIYFCGLKGMMP 276

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 31/234 (13%)

Query: 67  AAESLFHVSIDISDA-PDIASSHTRAGQY-LQLRVVDVGKPTFLAIASPPSFASASG-AF 123
            + ++ HV+ DIS+         +       + +     K    +IAS            
Sbjct: 138 GSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTV 197

Query: 124 EFLVKSVAGSTAEV-----------LCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTV 171
              V+ +     E            LC L  G D V+I+  +G+   +    P DE  TV
Sbjct: 198 SLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLL----PDDEDATV 253

Query: 172 LIFATGSGISPIRSLIESGFSSKERSD-----VRLYYGARNLKRMAYQDKFKEWESSGV- 225
           ++ ATG+GI+P R+ +   F  +           L +G      + Y+D F++  +    
Sbjct: 254 VMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPD 313

Query: 226 --KIVPVLSQPDGNWSGETGYVQ-AAFSRAKKIFN---PQGTGVVLCGQKQMAE 273
             ++   +S+      G   YVQ      A ++F       T V +CG K M  
Sbjct: 314 NFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGMQP 367

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Length = 142

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213
           G         P +++  +L     +GI  +  + ++    +E  +            +  
Sbjct: 10  GTPV------PMEKFGKILAIGAYTGIVEVYPIAKA---WQEIGNDVTTLHVTFEPMVIL 60

Query: 214 QDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245
           +++ ++  +  +     L+     +      V
Sbjct: 61  KEELEKAVTRHIVEPVPLNPNQD-FLANMKNV 91

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVR 200
             +GD VE+S      F +D          +L+ A G GI+P+ S+      ++     R
Sbjct: 90  TSEGDAVEVSLPRNE-FPLD----KRAKSFILV-AGGIGITPMLSMARQ-LRAEGLRSFR 142

Query: 201 LYYGARNLKRMAYQD 215
           LYY  R+ +  A+ D
Sbjct: 143 LYYLTRDPEGTAFFD 157

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 38/298 (12%), Positives = 69/298 (23%), Gaps = 109/298 (36%)

Query: 17  SQTFPPMSILR-------RIPLLHLKPQRRRL---------ATLAAAAVRQDTTV----- 55
           +Q F   ++ R       R  LL L+P +  L           +A               
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 56  ---W-------TPTPLAEI------------SPAAESLFHVSIDISDAPDIASSHTRAGQ 93
              W       +P  + E+            +  ++   ++ + I           ++  
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 94  Y----LQLRVVDVGKPTFLAIASPPSFASASGAFEF----LVKSVAGSTAEVLCGLKKGD 145
           Y    L L   +V                   AF      L+ +      + L       
Sbjct: 243 YENCLLVLL--NVQNAKAWN------------AFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFAT------------GSGISPIR-SLIESGFS 192
           +                  PDE     +                   +P R S+I    S
Sbjct: 289 ISLDH--HSMTLT------PDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AES 336

Query: 193 SKE---RSDVRLYYGARNLKRMA-----------YQDKFKEWE--SSGVKIVP--VLS 232
            ++     D   +     L  +            Y+  F           I P  +LS
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLS 393

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	100.0
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	100.0
1tvc_A	250	Methane monooxygenase component C, methane monooxy	100.0
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	100.0
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	100.0
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	100.0
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	100.0
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	100.0
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	100.0
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	100.0
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	100.0
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	100.0
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	100.0
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.97
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.96
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.94
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	99.93
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.93
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	99.92
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.91
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.91
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.91
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.89
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.89
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.84

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=100.00  E-value=5.7e-40  Score=283.96  Aligned_cols=224  Identities=16%  Similarity=0.273  Sum_probs=190.9

Q ss_pred             ccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEE
Q 023223           50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLV  127 (285)
Q Consensus        50 ~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~V  127 (285)
                      .+++..|..++|++++.+++++++++|+.+++.  ....|+||||+.|+++..  ...|+|||+|.+..   ++.++|+|
T Consensus         5 ~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~---~~~~~l~v   79 (243)
T 2eix_A            5 ALNPNEYKKFMLREKQIINHNTRLFRFNLHHPE--DVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE---KGYFDLII   79 (243)
T ss_dssp             SCCSSSCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEE
T ss_pred             cCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCC--cccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC---CCEEEEEE
Confidence            345678999999999999999999999987542  136799999999999843  35789999999864   78999999


Q ss_pred             EEeC-CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEcc
Q 023223          128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGA  205 (285)
Q Consensus       128 k~~~-G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~  205 (285)
                      |.++ |.+|+||+++++||+|.+.||+|+ |.++.    +..++++|||||+||||+++|++++.+. +...+++|+|++
T Consensus        80 k~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~~----~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~  154 (243)
T 2eix_A           80 KVYEKGQMSQYIDHLNPGDFLQVRGPKGQ-FDYKP----NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFAN  154 (243)
T ss_dssp             ECCTTCHHHHHHHTCCTTCEEEEEEEECS-CCCCT----TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEE
T ss_pred             EEcCCCCcchHhhcCCCCCEEEEECCeEE-EEeCC----CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEc
Confidence            9985 789999999999999999999999 76652    3468999999999999999999998764 346789999999


Q ss_pred             CCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCC-CCCcEEEEECchhHHHHHHHHHHhc
Q 023223          206 RNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       206 r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      |+.++++|+++|++|..+  ++++++++++++++|.+..|++++...++. ... ..+..+|+|||+.|++.+++.|.++
T Consensus       155 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~-~~~~~~~~~vy~CGp~~m~~~v~~~l~~~  233 (243)
T 2eix_A          155 VNEDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQH-FSPPSSDIKVMMCGPPMMNKAMQGHLETL  233 (243)
T ss_dssp             EEGGGCTTHHHHHHHHHHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHH-SCCTTSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCccccCcCCccCHHHHHHh-cCCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence            999999999999999763  799999999888889899999997554421 222 2567899999999999999999999


Q ss_pred             CC
Q 023223          283 SA  284 (285)
Q Consensus       283 Gv  284 (285)
                      |+
T Consensus       234 G~  235 (243)
T 2eix_A          234 GY  235 (243)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=100.00  E-value=4.5e-39  Score=283.37  Aligned_cols=230  Identities=17%  Similarity=0.229  Sum_probs=190.2

Q ss_pred             hccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEE
Q 023223           49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFL  126 (285)
Q Consensus        49 ~~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~  126 (285)
                      +.+++..|..++|++++.+++++++++|+.+++.  ....|+|||||.|+++..+  ..|+|||++.|..   ++.++|+
T Consensus         9 ~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~   83 (275)
T 1umk_A            9 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQ--HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD---KGFVDLV   83 (275)
T ss_dssp             SCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTT--CBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC---CSEEEEE
T ss_pred             cccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcc--cccCCCCCcEEEEEEeeCCcEEEeccccCCccCC---CCeEEEE
Confidence            4456778999999999999999999999987542  1357999999999987444  6799999999864   7899999


Q ss_pred             EEEe---------C-CcchHHhhCCCCCCEEEEEeecCCCc-------ccCCCC----CCCCCCeEEEEEcCcchhHHHH
Q 023223          127 VKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGF-------AVDRIQ----PPDEYPTVLIFATGSGISPIRS  185 (285)
Q Consensus       127 Vk~~---------~-G~~s~~L~~l~~Gd~v~i~gP~G~~f-------~~~~~~----~~~~~~~~vliAgGtGIaP~~s  185 (285)
                      ||.+         + |.+|+||+++++||+|.++||+|.++       .+....    .....++++||||||||||+++
T Consensus        84 vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~  163 (275)
T 1umk_A           84 IKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQ  163 (275)
T ss_dssp             EECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHH
T ss_pred             EEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHH
Confidence            9987         3 78999999999999999999999842       222100    0014679999999999999999


Q ss_pred             HHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhhcCC-CCC
Q 023223          186 LIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQG  260 (285)
Q Consensus       186 il~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~~  260 (285)
                      |++++++. +...+++|+|++|+.++++|+++|++|..+   ++++++++++++++|.+..|++++.+.++ .... ..+
T Consensus       164 ~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~-~l~~~~~~  242 (275)
T 1umk_A          164 VIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD-HLPPPEEE  242 (275)
T ss_dssp             HHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH-HSCCGGGC
T ss_pred             HHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH-hcCCCCCC
Confidence            99998765 456899999999999999999999999864   68999989988888999999999865543 2222 256


Q ss_pred             cEEEEECchhHHH-HHHHHHHhcCC
Q 023223          261 TGVVLCGQKQMAE-VCYCFCLEFSA  284 (285)
Q Consensus       261 ~~vyiCGp~~m~~-~~~~~L~~~Gv  284 (285)
                      ..+|+|||+.|++ .+++.|.++|+
T Consensus       243 ~~vyvCGp~~m~~~~v~~~L~~~G~  267 (275)
T 1umk_A          243 PLVLMCGPPPMIQYACLPNLDHVGH  267 (275)
T ss_dssp             CEEEEESCHHHHHHTTHHHHHHHTC
T ss_pred             eEEEEECCHHHHHHHHHHHHHHcCC
Confidence            7899999999999 89999999987

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=100.00  E-value=3.3e-39  Score=280.55  Aligned_cols=222  Identities=17%  Similarity=0.349  Sum_probs=189.2

Q ss_pred             CCCeeeeEEEEEeecCCCeEEEEEEC-C-CCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223           53 TTVWTPTPLAEISPAAESLFHVSIDI-S-DAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV  130 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~~~~~~l~l~~-~-~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~  130 (285)
                      ...+..++|++++.+++++++++|+. + +... ....|+||||+.|++++....|+|||++.|..   ++.++|+||.+
T Consensus         7 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~i~vk~~   82 (250)
T 1tvc_A            7 EVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGN-RGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP---EGRLEFLIRVL   82 (250)
T ss_dssp             CSSEEEEEBCCCEEEETTEEEEEECSSTTSSSS-SCCSCCSCCEEEECTTSCSSSEEECCBCCSSS---SCCEEEEECCC
T ss_pred             CcceEEEEEEEEEEcCCCeEEEEEEecCCCCcc-cccCcCCCcEEEEEeCCCccccccccCCCCCC---CCeEEEEEEEC
Confidence            34677899999999999999999997 5 4210 02679999999999987677899999999875   68999999998


Q ss_pred             C-CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223          131 A-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (285)
Q Consensus       131 ~-G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~  208 (285)
                      + |.+|+||+ ++++||+|.+.||+|+ |.+..    ...++++||||||||||+++|++++.+.+...+++|+|++|+.
T Consensus        83 ~~G~~s~~l~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~v~l~~~~r~~  157 (250)
T 1tvc_A           83 PEGRFSDYLRNDARVGQVLSVKGPLGV-FGLKE----RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTE  157 (250)
T ss_dssp             TTSSSHHHHHHHSSSSSEEEEEEEECC-CSCCC----CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSS
T ss_pred             CCCCchHHHHhcCCCCCEEEEEcCccc-cccCc----cCCceEEEEEeccCHHHHHHHHHHHHhcCCCceEEEEEEeCCH
Confidence            6 68999996 8999999999999999 44432    2358899999999999999999999876666899999999999


Q ss_pred             cccccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          209 KRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       209 ~~~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++++|.++|++|..  .++++++++++++++|.+..|++++.+.+.... ...+..+|+|||+.|++.+++.|.++|+
T Consensus       158 ~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~-~~~~~~vyvCGp~~m~~~v~~~l~~~G~  234 (250)
T 1tvc_A          158 PELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDLES-SDANPDIYLCGPPGMIDAACELVRSRGI  234 (250)
T ss_dssp             TTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSSSSSHHHHHHHHH-SSSSSEEEEESSHHHHHHHHHHHHHHCC
T ss_pred             HHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCCccceehHHHHhhhhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence            99999999999975  489999999988888999999999887753211 1356789999999999999999999886

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=2.1e-38  Score=284.01  Aligned_cols=223  Identities=22%  Similarity=0.327  Sum_probs=185.9

Q ss_pred             cCCCCeeeeEEEEEeecCCC-----eEEEEEECCCCCcccccCCCCCcEEEEEEcCC---C---eeeeeeecCCCCCCC-
Q 023223           51 QDTTVWTPTPLAEISPAAES-----LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFAS-  118 (285)
Q Consensus        51 ~~~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~---~~~~~si~s~p~~~~-  118 (285)
                      ..+.....++|++++.++++     +++++|+.+..     +.|+|||||.|++++.   +   ..|+|||+|.|.... 
T Consensus        28 ~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~  102 (310)
T 3vo2_A           28 YKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE-----IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFG  102 (310)
T ss_dssp             BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTT
T ss_pred             ecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC-----CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCC
Confidence            34455678999999999997     99999996532     5799999999999752   2   468999999986311 


Q ss_pred             CCCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHH
Q 023223          119 ASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE  188 (285)
Q Consensus       119 ~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~  188 (285)
                      +++.++|+||.+          .|.+|+||+++++||+|.+.||+|.+|.+..    +..++++|||||||||||+++++
T Consensus       103 ~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~  178 (310)
T 3vo2_A          103 DSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPK----DPNATVIMLATGTGIAPFRSFLW  178 (310)
T ss_dssp             SSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBS----CTTCEEEEEEEGGGGHHHHHHHH
T ss_pred             CCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCC----CCCCCEEEEeCCcchhHHHHHHH
Confidence            268999999986          3889999999999999999999999665432    35689999999999999999999


Q ss_pred             HhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cC
Q 023223          189 SGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IF  256 (285)
Q Consensus       189 ~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~  256 (285)
                      +++..+.     ..+++|+|++|+.++++|+++|++|...   ++++++++++++++|.+..+++++.+.+...    ..
T Consensus       179 ~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l  258 (310)
T 3vo2_A          179 KMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELL  258 (310)
T ss_dssp             HHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHH
T ss_pred             HHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhc
Confidence            9875432     3789999999999999999999999874   7999999999988999999999987765221    12


Q ss_pred             CCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          257 NPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       257 ~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      ...+..+|+|||++|++.+++.|.+.
T Consensus       259 ~~~~~~vyvCGp~~M~~~v~~~L~~~  284 (310)
T 3vo2_A          259 KKDNTYVYMCGLKGMEKGIDDIMLNL  284 (310)
T ss_dssp             TSTTEEEEEEESTTHHHHHHHHHHHH
T ss_pred             ccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            34578999999999999999999864

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=100.00  E-value=1.6e-38  Score=272.98  Aligned_cols=212  Identities=22%  Similarity=0.363  Sum_probs=179.7

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s  135 (285)
                      ..++|++++.+++++++++|+.++.     +.|+||||+.|++++ ...|+|||++.|..   ++.++|+||.++ |..+
T Consensus         3 ~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGq~v~l~~~~-~~~R~ySi~s~~~~---~~~l~l~i~~~~~G~~s   73 (232)
T 1qfj_A            3 LSCKVTSVEAITDTVYRVRIVPDAA-----FSFRAGQYLMVVMDE-RDKRPFSMASTPDE---KGFIELHIGASEINLYA   73 (232)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESSC-----CCCCTTCEEEEESSS-SCEEEEECCSCTTS---TTCEEEEEC------CC
T ss_pred             eEEEEEEEEecCCCEEEEEEecCCC-----CCcCCCCEEEEECCC-CceeeeecCCCCCC---CCcEEEEEEEccCCchh
Confidence            4689999999999999999997532     589999999999986 56789999999974   679999999985 4555


Q ss_pred             H-HhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223          136 E-VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (285)
Q Consensus       136 ~-~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (285)
                      . +++++++||+|.+.||+|+ |.+..    +..++++|||||+||||++++++++...+...+++|+|++|+.++++|.
T Consensus        74 ~~~~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~  148 (232)
T 1qfj_A           74 KAVMDRILKDHQIVVDIPHGE-AWLRD----DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDL  148 (232)
T ss_dssp             HHHHHHHHHHSEEEEEEEECS-CCCCS----CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTH
T ss_pred             HHHHHhCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhhhH
Confidence            5 5678999999999999999 44431    2468999999999999999999999876667899999999999999999


Q ss_pred             HHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH-HhcCC
Q 023223          215 DKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC-LEFSA  284 (285)
Q Consensus       215 ~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L-~~~Gv  284 (285)
                      ++|++|..  .++++++++++++++|.+..|++++.+.+.  ..+..+..+|+|||++|++.+++.| .++|+
T Consensus       149 ~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~--~~~~~~~~vyvCGp~~m~~~v~~~l~~~~g~  219 (232)
T 1qfj_A          149 CELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQD--HGTLAEHDIYIAGRFEMAKIARDLFCSERNA  219 (232)
T ss_dssp             HHHHHHHHHCTTEEEEEEESSCCTTCCSEESCHHHHHHHH--CSCCTTCEEEEESCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHCCCeEEEEEEcCCCCCcCCceeeHHHHHHHh--cCCccccEEEEECCHHHHHHHHHHHHHHcCC
Confidence            99999986  489999999998888999999999887763  3344678999999999999999999 88886

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=5e-38  Score=271.65  Aligned_cols=212  Identities=15%  Similarity=0.199  Sum_probs=182.0

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSV  130 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~~  130 (285)
                      .|++++|++++.+++++++++|+.++...  ...|+||||+.|+++..+    ..|+|||++.|.    ++.++|+||.+
T Consensus         2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~~--~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~~~i~vk~~   75 (243)
T 4eh1_A            2 DGRTFVVREKQVESAYVTSFVLVPADGGA--VLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASN----GREYRISVKRE   75 (243)
T ss_dssp             CCEEEEEEEEEECSSSEEEEEEEESSCSC--CCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC----SSCEEEEEECT
T ss_pred             CcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCcCCCCEEEEEEecCCCccccceeeEeccCCC----CCeEEEEEEEe
Confidence            68999999999999999999999765422  267999999999998543    469999999986    68899999998


Q ss_pred             -----C-CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEE
Q 023223          131 -----A-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY  203 (285)
Q Consensus       131 -----~-G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~  203 (285)
                           + |.+|+||+ ++++||+|.+.||+|. |.++     +..++++||||||||||++++++++.+.+... ++++|
T Consensus        76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~-~~~~-----~~~~~~vliagGtGitp~~~~l~~l~~~~~~~-v~l~~  148 (243)
T 4eh1_A           76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGD-FFYV-----ERERPVVLISAGVGATPMQAILHTLAKQNKSG-VTYLY  148 (243)
T ss_dssp             TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECS-CCCC-----CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             ecCCCCCCeehhHHHhcCCCCCEEEEEccCcc-cCcC-----CCCCCEEEEEccccHHHHHHHHHHHHHcCCCe-EEEEE
Confidence                 4 67899997 5999999999999998 5454     35789999999999999999999998765445 99999


Q ss_pred             ccCCccccccHHHHHHHHHC-CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          204 GARNLKRMAYQDKFKEWESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       204 ~~r~~~~~~~~~~l~~l~~~-~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      ++|+.++++|.++|++|..+ +++++++++++.++|. ..|++++... .  . ...+..+|+|||+.|++++++.|.++
T Consensus       149 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~s~~~~~~~-~~g~~~~~~~-~--~-~~~~~~vyvCGp~~m~~~v~~~l~~~  223 (243)
T 4eh1_A          149 ACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDV-LQGEMQLAEL-I--L-PIEDGDFYLCGPIGFMQYVVKQLLAL  223 (243)
T ss_dssp             EESSGGGCTTHHHHHHHHHHHTCEEEEEESSCCCTTC-EESSCCCTTS-C--C-CTTTCEEEEEECHHHHHHHHHHHHHH
T ss_pred             EeCChhhhhHHHHHHHHHHhCCeEEEEEEccCCCccc-ccCCccHHHe-e--c-cCCCcEEEEECCHHHHHHHHHHHHHc
Confidence            99999999999999998865 8999999998776665 6788887654 1  2 23678999999999999999999999


Q ss_pred             CC
Q 023223          283 SA  284 (285)
Q Consensus       283 Gv  284 (285)
                      |+
T Consensus       224 g~  225 (243)
T 4eh1_A          224 GV  225 (243)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=100.00  E-value=4.8e-38  Score=275.99  Aligned_cols=225  Identities=17%  Similarity=0.277  Sum_probs=184.2

Q ss_pred             CCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223           52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKS  129 (285)
Q Consensus        52 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~  129 (285)
                      ++..|..++|++++.+++++++++|+.++..  ..+.|+||||+.|.++..  ...|+|||++.+..   ++.++|+||.
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~vk~   82 (270)
T 2cnd_A            8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPD--QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE---IGHFDLLVKV   82 (270)
T ss_dssp             ---CCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEEEC
T ss_pred             CCCceEEEEEEEEEEeCCCeEEEEEECCCCc--cccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC---CCEEEEEEEE
Confidence            4456889999999999999999999987542  236799999999998743  35799999999864   6899999998


Q ss_pred             e----------CCcchHHhhCCCCCCEEEEEeecCC-------CcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhc
Q 023223          130 V----------AGSTAEVLCGLKKGDVVEISQVMGR-------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS  192 (285)
Q Consensus       130 ~----------~G~~s~~L~~l~~Gd~v~i~gP~G~-------~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~  192 (285)
                      +          .|.+|+||+++++||+|.+.||+|.       .|.++..  ++..++++||||||||||+++|+++++.
T Consensus        83 ~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~--~~~~~~~vliagGtGiaP~~~~l~~l~~  160 (270)
T 2cnd_A           83 YFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK--QRNARRLAMICGGSGITPMYQIIQAVLR  160 (270)
T ss_dssp             CCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTE--EECCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             eccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCC--cccCCEEEEEeccccHHHHHHHHHHHHh
Confidence            5          3789999999999999999999998       3554310  0246899999999999999999999886


Q ss_pred             c--CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeC---CCCCCCccccccchHHHHhhhcCC-CCCcEE
Q 023223          193 S--KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQ---PDGNWSGETGYVQAAFSRAKKIFN-PQGTGV  263 (285)
Q Consensus       193 ~--~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~---~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~v  263 (285)
                      .  ....+++|+|++|+.++++|+++|++|..+   ++++++++++   ++++|.+..|++++.+.++. ... ..+..+
T Consensus       161 ~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~-l~~~~~~~~v  239 (270)
T 2cnd_A          161 DQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREH-VPEGGDDTLA  239 (270)
T ss_dssp             TTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHH-SCCCSSSEEE
T ss_pred             cCCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHh-cCCCcCCEEE
Confidence            4  246789999999999999999999999864   6888888887   46678888999998765532 222 245789


Q ss_pred             EEECchhHHHH-HHHHHHhcCC
Q 023223          264 VLCGQKQMAEV-CYCFCLEFSA  284 (285)
Q Consensus       264 yiCGp~~m~~~-~~~~L~~~Gv  284 (285)
                      |+|||+.|++. +++.|.++|+
T Consensus       240 yvCGp~~m~~~~~~~~L~~~G~  261 (270)
T 2cnd_A          240 LACGPPPMIQFAISPNLEKMKY  261 (270)
T ss_dssp             EEECCHHHHHTTTHHHHHTTTC
T ss_pred             EEECCHHHHHHHHHHHHHHcCC
Confidence            99999999997 5899999987

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=100.00  E-value=2.6e-37  Score=268.06  Aligned_cols=215  Identities=22%  Similarity=0.346  Sum_probs=181.0

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      .|..++|++++.+++++++++|+ ++.     +.|+||||+.|+++..  ...|+|||++.|.    ++.++|+||.++ 
T Consensus         3 ~~~~~~V~~~~~~~~~~~~l~l~-~~~-----~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~l~~~v~~~~~   72 (248)
T 1fdr_A            3 DWVTGKVTKVQNWTDALFSLTVH-APV-----LPFTAGQFTKLGLEIDGERVQRAYSYVNSPD----NPDLEFYLVTVPD   72 (248)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEE-CCC-----CCCCTTCEEEEEECC---CEEEEEECCSCTT----CSSEEEEEECCTT
T ss_pred             ceEEEEEEEEEEcCCCEEEEEEe-CCC-----CCcCCCCcEEEEccCCCCeeeeeecccCCCC----CCcEEEEEEEeCC
Confidence            58899999999999999999997 322     5799999999999853  4679999999986    688999999886 


Q ss_pred             CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223          132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~  210 (285)
                      |.+|+||+++++||+|.+. ||+|. |.++..   ...++++||||||||||++++++++.+.+...+++|+|++|+.++
T Consensus        73 G~~s~~l~~l~~Gd~v~v~~gP~G~-f~l~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~  148 (248)
T 1fdr_A           73 GKLSPRLAALKPGDEVQVVSEAAGF-FVLDEV---PHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAAD  148 (248)
T ss_dssp             CSSHHHHHTCCTTCEEEEESSCBCC-CSGGGS---CCCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGG
T ss_pred             CchhhHHHhCCCcCEEEEecCCcce-eEcCCC---CCCceEEEEEecccHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHH
Confidence            6899999999999999999 99998 766521   136899999999999999999999876555689999999999999


Q ss_pred             cccHHHHHHHHH---CCCEEEEEeeCCCCCCCccccccchHHHHhhh------cCCCCCcEEEEECchhHHHHHHHHH-H
Q 023223          211 MAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK------IFNPQGTGVVLCGQKQMAEVCYCFC-L  280 (285)
Q Consensus       211 ~~~~~~l~~l~~---~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~------~~~~~~~~vyiCGp~~m~~~~~~~L-~  280 (285)
                      ++|.++|++|..   .++++++++++++. +.+..|++++.+.+...      ..+..+..+|+|||++|++.+++.| .
T Consensus       149 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~  227 (248)
T 1fdr_A          149 LSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKE  227 (248)
T ss_dssp             CTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHHHHHHH
Confidence            999999999986   47999988887643 34568899887654210      1234678999999999999999999 8


Q ss_pred             hcCC
Q 023223          281 EFSA  284 (285)
Q Consensus       281 ~~Gv  284 (285)
                      ++|+
T Consensus       228 ~~G~  231 (248)
T 1fdr_A          228 TRQM  231 (248)
T ss_dssp             HHCC
T ss_pred             HcCC
Confidence            8886

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.7e-37  Score=272.36  Aligned_cols=218  Identities=21%  Similarity=0.381  Sum_probs=182.8

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-------------------------------CC
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-------------------------------VG  103 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-------------------------------~~  103 (285)
                      .+..++|++++.+++++++++|+.++..   .+.|+|||||.|+++.                               ..
T Consensus         8 ~~~~~~V~~~~~~t~~~~~l~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   84 (290)
T 2r6h_A            8 KEWECEVLSNKNVSTFIKEFVVKLPEGE---TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEE   84 (290)
T ss_dssp             CEEEEEEEEEEESSSSEEEEEEECSTTC---CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSC
T ss_pred             eEEEEEEEEeeecCCCeEEEEEEcCCCC---ccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCC
Confidence            3457999999999999999999987532   2569999999999874                               24


Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEe----------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCC
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSV----------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDE  167 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~----------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~  167 (285)
                      ..|+|||++.|..   .+.++|+||.+                .|.+|+||+++++||+|.+.||+|. |.+.     +.
T Consensus        85 ~~R~ySi~s~~~~---~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~-----~~  155 (290)
T 2r6h_A           85 TVRAYSMANYPAE---GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGD-FHIQ-----DT  155 (290)
T ss_dssp             EEEEEECCSCTTC---CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECC-CCCC-----SS
T ss_pred             cceeeeccCCCCC---CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccC-CcCC-----CC
Confidence            5789999999974   68999999962                3789999999999999999999999 4443     35


Q ss_pred             CCeEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHH--CCCEEEEEeeCC--CCCCCccc
Q 023223          168 YPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQP--DGNWSGET  242 (285)
Q Consensus       168 ~~~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~~~v~~~~s~~--~~~~~~~~  242 (285)
                      .++++||||||||||+++|+++++.. ....+++|+|++|+.++++|+++|++|..  .+++++++++++  ++.|.+..
T Consensus       156 ~~~~vliagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~  235 (290)
T 2r6h_A          156 DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYV  235 (290)
T ss_dssp             SCEEEEEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCCSCB
T ss_pred             CCeEEEEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCCCee
Confidence            78999999999999999999987754 34689999999999999999999999976  478999999875  45788889


Q ss_pred             cccchHHHHhhh--cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          243 GYVQAAFSRAKK--IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       243 g~v~~~~~~~~~--~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |++++.+.+...  .....+..+|+|||+.|++.+++.|.++|+
T Consensus       236 g~v~~~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~  279 (290)
T 2r6h_A          236 GFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGV  279 (290)
T ss_dssp             SCHHHHHHHHTTTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTC
T ss_pred             EecCHHHHHhHHhhccCcCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence            999987754321  122346789999999999999999999886

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=1.7e-37  Score=278.57  Aligned_cols=223  Identities=20%  Similarity=0.307  Sum_probs=183.5

Q ss_pred             CCCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCC-CC
Q 023223           52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SA  119 (285)
Q Consensus        52 ~~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~-~~  119 (285)
                      .+..+..++|++++.+++     ++++++|+.++.     +.|+||||+.|++++.      ..+|+|||+|.|... .+
T Consensus        33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~  107 (314)
T 1fnb_A           33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-----IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGD  107 (314)
T ss_dssp             BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred             CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-----CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence            345667899999999997     899999997653     5789999999998752      247899999998521 12


Q ss_pred             CCeEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHH
Q 023223          120 SGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES  189 (285)
Q Consensus       120 ~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~  189 (285)
                      .+.++|+||.+          .|.+|+||+++++||+|.+.||+|++|.+..    +..++++|||||||||||++|+++
T Consensus       108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~~  183 (314)
T 1fnb_A          108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPK----DPNATIIMLGTGTGIAPFRSFLWK  183 (314)
T ss_dssp             SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBS----CTTCEEEEEEEGGGGHHHHHHHHH
T ss_pred             CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCC----CCCCCEEEEeCCccHHHHHHHHHH
Confidence            58999999974          3788999999999999999999999765531    246899999999999999999999


Q ss_pred             hhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCC
Q 023223          190 GFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN  257 (285)
Q Consensus       190 ~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~  257 (285)
                      ++..+.     ..+++|+|++|+.++++|+++|++|..+   ++++++++++++++|.+..|++++.+.+...    ...
T Consensus       184 ~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~  263 (314)
T 1fnb_A          184 MFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLK  263 (314)
T ss_dssp             HHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTT
T ss_pred             HHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHh
Confidence            875431     4689999999999999999999999873   6899999999888888889999887664211    122


Q ss_pred             CCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          258 PQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       258 ~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      ..+..+|+|||+.|++++.+.|.+.+
T Consensus       264 ~~~~~vyvCGp~~m~~~v~~~L~~~~  289 (314)
T 1fnb_A          264 KDNTYVYMCGLKGMEKGIDDIMVSLA  289 (314)
T ss_dssp             STTEEEEEEECTTHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            25788999999999999998887753

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=1.5e-37  Score=278.40  Aligned_cols=224  Identities=20%  Similarity=0.272  Sum_probs=179.5

Q ss_pred             cCCCCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--------CeeeeeeecCCCCCC
Q 023223           51 QDTTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--------GKPTFLAIASPPSFA  117 (285)
Q Consensus        51 ~~~~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--------~~~~~~si~s~p~~~  117 (285)
                      ..+..+..++|++++.++     +++++|+|+.++.     +.|+|||||.|++++.        ..+|+|||+|.|...
T Consensus        23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~   97 (311)
T 3lo8_A           23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD   97 (311)
T ss_dssp             BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS-----SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred             cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC-----CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence            345667899999999999     8999999998643     6899999999999864        257999999998631


Q ss_pred             C-CCCeEEEEEEEe--------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhH
Q 023223          118 S-ASGAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISP  182 (285)
Q Consensus       118 ~-~~~~l~l~Vk~~--------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP  182 (285)
                      . +.+.++|+||.+              .|.+|+||+++++||+|.+.||+|.+|....   .+..++++||||||||||
T Consensus        98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~---~~~~~~~vlIagGtGIaP  174 (311)
T 3lo8_A           98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPE---EDPNATHIMIATGTGVAP  174 (311)
T ss_dssp             TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCC---SCTTCEEEEEEEGGGGHH
T ss_pred             CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCC---cCCCCCEEEEECCEEHHH
Confidence            1 247999999975              3789999999999999999999999654431   125689999999999999


Q ss_pred             HHHHHHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh
Q 023223          183 IRSLIESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK  254 (285)
Q Consensus       183 ~~sil~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~  254 (285)
                      +++++++++..+.     ..+++|+|++|+.++++|+++|++|...   +++++++++++++.|.+..|++++.+.+...
T Consensus       175 ~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~  254 (311)
T 3lo8_A          175 FRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSD  254 (311)
T ss_dssp             HHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHH
T ss_pred             HHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHH
Confidence            9999999876432     3689999999999999999999999874   7899999999988898889999887765311


Q ss_pred             -c--CCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          255 -I--FNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       255 -~--~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                       .  ....+..+|+|||+.|++++++.|.+.
T Consensus       255 ~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~  285 (311)
T 3lo8_A          255 EIFKLLDGGAHIYFCGLKGMMPGIQDTLKKV  285 (311)
T ss_dssp             HHHHHHHTTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             HHHHhhcCCcEEEEECCHHHHHHHHHHHHHH
Confidence             0  012568999999999999999988765

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=6e-37  Score=277.61  Aligned_cols=216  Identities=21%  Similarity=0.323  Sum_probs=185.6

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G  132 (285)
                      ..+..++|++++.+++++++++|+.++..  ....|+||||+.|++++....|+|||++.|.    ++.++|+||.++ |
T Consensus       106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~----~~~l~~~vk~~~~G  179 (338)
T 1krh_A          106 IHHFEGTLARVENLSDSTITFDIQLDDGQ--PDIHFLAGQYVNVTLPGTTETRSYSFSSQPG----NRLTGFVVRNVPQG  179 (338)
T ss_dssp             CEEEEEEEEEEEESSSSEEEEEEEECTTC--CCCCCCTTCEEEEECTTSSCEEEEECCSCTT----CSEEEEEEECCTTC
T ss_pred             ceEEEEEEEEEEEcCCCEEEEEEEeCCCC--CCCCcCCCCeEEEEcCCCCccccccccCCCC----CCeEEEEEEEcCCC
Confidence            45778999999999999999999986531  1267999999999999767789999999986    689999999986 6


Q ss_pred             cchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 023223          133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM  211 (285)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~  211 (285)
                      .+|+||+ ++++||+|.++||+|+ |.+..     ..++++||||||||||+++|++++...+...+++|+|++|+.+++
T Consensus       180 ~~S~~L~~~l~~Gd~v~v~gP~G~-f~~~~-----~~~~~vliagGtGiaP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~  253 (338)
T 1krh_A          180 KMSEYLSVQAKAGDKMSFTGPFGS-FYLRD-----VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDL  253 (338)
T ss_dssp             HHHHHHHTTCCTTCEEEEEEEECS-CSCCC-----CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGC
T ss_pred             CchhhHhhccCCCCEEEEECCccc-eEeCC-----CCceEEEEEccccHhHHHHHHHHHHHcCCCCeEEEEEEeCCHHHh
Confidence            7999996 7999999999999999 54542     348999999999999999999999876667899999999999999


Q ss_pred             ccHHHHHHHHH--CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          212 AYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       212 ~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +|.++|++|..  .++++++++++++..|. ..|++++.+.+. ...+ .+..+|+|||+.|++.+++.|.++|+
T Consensus       254 ~~~~el~~l~~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~-~~~~-~~~~vy~CGp~~m~~~v~~~l~~~G~  325 (338)
T 1krh_A          254 VALEQLDALQQKLPWFEYRTVVAHAESQHE-RKGYVTGHIEYD-WLNG-GEVDVYLCGPVPMVEAVRSWLDTQGI  325 (338)
T ss_dssp             CCHHHHHHHHHHCTTEEEEEEETTCCSSSS-EESCSGGGCCGG-GGGG-GCSEEEEEEEHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHhCCCeEEEEEEecCCCCCC-ccCccCHHHHHh-hccc-CCcEEEEECCHHHHHHHHHHHHHcCC
Confidence            99999999986  38999999998777775 688998876632 1222 56789999999999999999999886

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=100.00  E-value=7.7e-37  Score=282.53  Aligned_cols=218  Identities=17%  Similarity=0.257  Sum_probs=184.1

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS  129 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~  129 (285)
                      ..|.+++|++++.+++++++++|+.++...  ...|+|||||.|+++..+    ..|+|||++.|.    ++.++|+||.
T Consensus       150 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~  223 (396)
T 1gvh_A          150 EGTRDFRIVAKTPRSALITSFELEPVDGGA--VAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKR  223 (396)
T ss_dssp             SSEEEEEEEEEEECSSSEEEEEEEETTCCC--CCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC----SSCEEEEEEC
T ss_pred             CCcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCeEEEEecCCCCccceeecceeccCCC----CCeEEEEEEE
Confidence            468999999999999999999999865432  257999999999998433    479999999986    6789999999


Q ss_pred             eC-CcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 023223          130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN  207 (285)
Q Consensus       130 ~~-G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~  207 (285)
                      .+ |.+|+||++ +++||+|.++||+|. |.++.    +..++++||||||||||+++|++++...+...+++++|++|+
T Consensus       224 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~~~~~~~v~l~~~~r~  298 (396)
T 1gvh_A          224 EEGGQVSNWLHNHANVGDVVKLVAPAGD-FFMAV----ADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAEN  298 (396)
T ss_dssp             CTTCHHHHHHHHTCCTTCEEEEEEEECS-CCCCC----CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESC
T ss_pred             cCCCcchHHHHhcCCCCCEEEEEcCCcc-eECCC----CCCCCEEEEecchhHhHHHHHHHHHHhcCCCCcEEEEEEeCC
Confidence            85 789999996 999999999999996 76642    357899999999999999999999987666789999999999


Q ss_pred             ccccccHHHHHHHHHC--CCEEEEEeeCCCCCC-----CccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHH
Q 023223          208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL  280 (285)
Q Consensus       208 ~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~  280 (285)
                      .++++|+++|++|..+  +++++++++++++.|     ++..|+++....+.  .....+..+|+|||++|++.+++.|.
T Consensus       299 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~--~~~~~~~~vyvCGp~~m~~~v~~~L~  376 (396)
T 1gvh_A          299 GDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEG--AFSDPTMQFYLCGPVGFMQFTAKQLV  376 (396)
T ss_dssp             TTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSS--CCCCTTCEEEEESCHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHHHHhh--ccCCCCCEEEEeCCHHHHHHHHHHHH
Confidence            9999999999999874  789998898876543     45678888754432  11123678999999999999999999


Q ss_pred             hcCC
Q 023223          281 EFSA  284 (285)
Q Consensus       281 ~~Gv  284 (285)
                      ++|+
T Consensus       377 ~~Gv  380 (396)
T 1gvh_A          377 DLGV  380 (396)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            9987

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=100.00  E-value=1.5e-36  Score=281.22  Aligned_cols=217  Identities=17%  Similarity=0.289  Sum_probs=182.9

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC-C---CeeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-V---GKPTFLAIASPPSFASASGAFEFLVKS  129 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~-~---~~~~~~si~s~p~~~~~~~~l~l~Vk~  129 (285)
                      ..|.+++|++++.+++++++++|+.+++..  ...|+|||||.|+++. .   ...|+|||++.|.    ++.++|+||.
T Consensus       152 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~  225 (403)
T 1cqx_A          152 KGWRTFVIREKRPESDVITSFILEPADGGP--VVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKR  225 (403)
T ss_dssp             SSCEEEEEEEEEECSSSEEEEEEEETTCCC--CCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC----SSCEEEEEEC
T ss_pred             CcceeEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCEEEEEEecCCCCcceeecceecCCCC----CCeEEEEEEE
Confidence            468899999999999999999999765432  2579999999999982 2   2479999999986    6889999999


Q ss_pred             eC------CcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEE
Q 023223          130 VA------GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY  202 (285)
Q Consensus       130 ~~------G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~  202 (285)
                      ++      |.+|+||+ ++++||+|.++||+|. |.++.    +..++++||||||||||+++|++++.. +...+++++
T Consensus       226 ~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~-~~~~~v~l~  299 (403)
T 1cqx_A          226 EGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS-FHIDV----DAKTPIVLISGGVGLTPMVSMLKVALQ-APPRQVVFV  299 (403)
T ss_dssp             CCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS-CSCCT----TCCSCEEEEESSCCHHHHHHHHHHHTC-SSCCCEEEE
T ss_pred             CCCCCCCCCeehHHHhhCCCCCCEEEEecCccC-cccCC----CCCCCEEEEEecccHhhHHHHHHHHHh-CCCCcEEEE
Confidence            84      78999999 5999999999999996 76642    356899999999999999999999976 566889999


Q ss_pred             EccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCC-----CccccccchHHHHhhhcCCCCCcEEEEECchhHHHHH
Q 023223          203 YGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC  275 (285)
Q Consensus       203 ~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~  275 (285)
                      |++|+.++++|+++|++|..+  +++++++++++.+.|     ++..|+++....+... .. .+..+|+|||++|++.+
T Consensus       300 ~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~-~~-~~~~vyvCGp~~m~~~v  377 (403)
T 1cqx_A          300 HGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSI-LL-PDADYYICGPIPFMRMQ  377 (403)
T ss_dssp             EEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHH-CC-TTCEEEEESSHHHHHHH
T ss_pred             EEeCChhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhcc-CC-CCCEEEEeCCHHHHHHH
Confidence            999999999999999999863  789999999876655     3567888875444211 12 26899999999999999


Q ss_pred             HHHHHhcCC
Q 023223          276 YCFCLEFSA  284 (285)
Q Consensus       276 ~~~L~~~Gv  284 (285)
                      ++.|.++|+
T Consensus       378 ~~~L~~~Gv  386 (403)
T 1cqx_A          378 HDALKNLGI  386 (403)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999999987

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=100.00  E-value=2.1e-36  Score=266.19  Aligned_cols=214  Identities=18%  Similarity=0.325  Sum_probs=179.4

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcC---CCeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD---VGKPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~---~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      .+..++|++++.+++++++++|+.++.     +.|+||||+.|++++   ....|+|||++.|.    ++.++|+||.++
T Consensus        15 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~----~~~~~l~v~~~~   85 (272)
T 2bgi_A           15 LPDAQTVTSVRHWTDTLFSFRVTRPQT-----LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAW----DEELEFYSIKVP   85 (272)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEECTTSCEEEEEEECCSCTT----CSEEEEEEECCT
T ss_pred             EeEEEEEEEEEEcCCCEEEEEEeCCCC-----CccCCCCEEEEEeccCCCCeeeeeeeeccCCC----CCeEEEEEEEcc
Confidence            456899999999999999999997643     579999999999983   23579999999986    689999999975


Q ss_pred             -CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223          132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK  209 (285)
Q Consensus       132 -G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~  209 (285)
                       |.+|+||+++++||+|.++ ||+|. |.++..   ...++++||||||||||++++++++...+...+++|+|++|+.+
T Consensus        86 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~  161 (272)
T 2bgi_A           86 DGPLTSRLQHIKVGEQIILRPKPVGT-LVIDAL---LPGKRLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVA  161 (272)
T ss_dssp             TCTTHHHHTTCCTTCEEEEEEEEECS-CCGGGB---CCCSEEEEEEEGGGGHHHHHHTTCGGGGTSCSEEEEEEEESSSG
T ss_pred             CCCchhHHHhCCCCCEEEEeeCCCCc-cccccc---ccCCeEEEEeecccHHHHHHHHHHHHhcCCCCcEEEEEEeCCHH
Confidence             7899999999999999999 99998 666421   13689999999999999999999987665678999999999999


Q ss_pred             ccccHHHHH-HHHH---------CCCEEEEEeeCCCCCCCccccccchHHHHhh---h--c--CCCCCcEEEEECchhHH
Q 023223          210 RMAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAK---K--I--FNPQGTGVVLCGQKQMA  272 (285)
Q Consensus       210 ~~~~~~~l~-~l~~---------~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~---~--~--~~~~~~~vyiCGp~~m~  272 (285)
                      +++|.++|+ +|..         .++++++++++++   .+..|++++.+.+..   .  .  .+..+..+|+|||+.|+
T Consensus       162 ~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~  238 (272)
T 2bgi_A          162 ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFN  238 (272)
T ss_dssp             GGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHH
T ss_pred             HhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHH
Confidence            999999999 9976         4788888888763   346789988765421   0  1  12367899999999999


Q ss_pred             HHHHHHHHhcCC
Q 023223          273 EVCYCFCLEFSA  284 (285)
Q Consensus       273 ~~~~~~L~~~Gv  284 (285)
                      +.+++.|.++|+
T Consensus       239 ~~v~~~l~~~G~  250 (272)
T 2bgi_A          239 VDVMKVLESYGL  250 (272)
T ss_dssp             HHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999985

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=1.1e-36  Score=273.59  Aligned_cols=217  Identities=18%  Similarity=0.265  Sum_probs=178.9

Q ss_pred             CCCeeeeEEEEEeecC-----CCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------------------
Q 023223           53 TTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------  102 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~-----~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------------------  102 (285)
                      ++....++|++++.++     .+++++.|+.+..     +.|.+|||+.|..++.                         
T Consensus        12 ~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~-----~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h   86 (316)
T 3jqq_A           12 VKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL-----FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNH   86 (316)
T ss_dssp             SSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC-----CCCCTTCEEEECTTCC-------------------------
T ss_pred             CCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC-----cceecCcEeEEECCCcccccccccccccccccccccccccc
Confidence            3445679999999998     7999999998543     7999999999998753                         


Q ss_pred             -----------CeeeeeeecCCCCCCCCCCeEEEEEEEe-------------CCcchHHhhCCCCCCEEEEEeecCCCcc
Q 023223          103 -----------GKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKKGDVVEISQVMGRGFA  158 (285)
Q Consensus       103 -----------~~~~~~si~s~p~~~~~~~~l~l~Vk~~-------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~  158 (285)
                                 ..+|+|||+|.|.    ++.++|+||..             .|.+|++|+++++||+|.|+||+|. |.
T Consensus        87 ~~~~~~~~~g~~~~R~ySIaS~p~----~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-f~  161 (316)
T 3jqq_A           87 NNIALSHIKKQRCARLYSISSSNN----MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY-FN  161 (316)
T ss_dssp             ----------CCCCEEEEBCSCTT----SSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECC-CC
T ss_pred             cccccccCCCcccceeeecccCCC----CCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCc-eE
Confidence                       3578999999997    57899999974             2789999999999999999999998 76


Q ss_pred             cCCCCCCC---CCCeEEEEEcCcchhHHHHHHHHhhccC----------CCCcEEEEEccCCccccccHHHHHHHHHC--
Q 023223          159 VDRIQPPD---EYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVRLYYGARNLKRMAYQDKFKEWESS--  223 (285)
Q Consensus       159 ~~~~~~~~---~~~~~vliAgGtGIaP~~sil~~~~~~~----------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--  223 (285)
                      ++.    +   ..++++|||||||||||++|+++++...          ...+++|+|++|+.++++|.++|++|..+  
T Consensus       162 l~~----~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~  237 (316)
T 3jqq_A          162 LPN----DAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYP  237 (316)
T ss_dssp             CCT----THHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCT
T ss_pred             cCC----cccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCC
Confidence            652    2   2689999999999999999999998643          24789999999999999999999999874  


Q ss_pred             -CCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          224 -GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       224 -~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                       +++++++++++ ++|.+..|++++.+.+...    .....+..+|+|||++|++++.+.|.+.|.
T Consensus       238 ~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~  302 (316)
T 3jqq_A          238 NNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQ  302 (316)
T ss_dssp             TTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC---
T ss_pred             CcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence             79999999987 5788899999988766321    111257899999999999999999999873

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=2e-36  Score=280.23  Aligned_cols=224  Identities=23%  Similarity=0.319  Sum_probs=185.4

Q ss_pred             CCCCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCC-C
Q 023223           52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFAS-A  119 (285)
Q Consensus        52 ~~~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~-~  119 (285)
                      .+..+..++|++++.+++     ++++|+|+.++.    .+.|+||||+.|++++.      ..+|+|||++.|.... +
T Consensus       118 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~  193 (402)
T 2b5o_A          118 RPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG----DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMED  193 (402)
T ss_dssp             CSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS----CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTS
T ss_pred             cCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC----CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCC
Confidence            344567899999999999     999999998653    26899999999998752      2468999999986311 2


Q ss_pred             CCeEEEEEEEe-----------CCcchHHhhCCCCC-CEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHH
Q 023223          120 SGAFEFLVKSV-----------AGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI  187 (285)
Q Consensus       120 ~~~l~l~Vk~~-----------~G~~s~~L~~l~~G-d~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil  187 (285)
                      ++.++|+||..           .|.+|+||+++++| |.|.+.||+|++|.++.    +..++++|||||||||||++++
T Consensus       194 ~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~----~~~~~vvlIAgGtGIaP~~s~l  269 (402)
T 2b5o_A          194 NKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPD----DEDATVVMLATGTGIAPFRAFL  269 (402)
T ss_dssp             SCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCS----CTTCEEEEEEEGGGGHHHHHHH
T ss_pred             CCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCc----cCCCCEEEEEcccCHHHHHHHH
Confidence            57899999982           37899999999999 99999999999765542    2468999999999999999999


Q ss_pred             HHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----c
Q 023223          188 ESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----I  255 (285)
Q Consensus       188 ~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~  255 (285)
                      ++++..+.     ..+++|+|++|+.++++|+++|++|...   +++++++++++++.|.+..+++++.+.+...    .
T Consensus       270 ~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~  349 (402)
T 2b5o_A          270 WRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEM  349 (402)
T ss_dssp             HHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHH
T ss_pred             HHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHH
Confidence            99876542     4789999999999999999999999873   7999999999888888888999887765211    1


Q ss_pred             CCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          256 FNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       256 ~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      ....+..+|+|||++|++.+.+.|.+.|
T Consensus       350 l~~~~~~vyvCGP~~M~~~v~~~L~~~g  377 (402)
T 2b5o_A          350 IQKPNTHVYMCGLKGMQPPIDETFTAEA  377 (402)
T ss_dssp             HTSTTEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCHHHHHHHHHHHHHHH
Confidence            2234689999999999999999998765

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=100.00  E-value=9.7e-37  Score=265.99  Aligned_cols=214  Identities=21%  Similarity=0.307  Sum_probs=178.9

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      .|..++|++++.+++++++++|+.++.     ..|+||||+.|+++..+  ..|+|||++.|.    ++.++|+||.++ 
T Consensus         2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~~~~~i~~~~~   72 (257)
T 2qdx_A            2 NLYTERVLSVHHWNDTLFSFKTTRNPG-----LRFKTGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVPD   72 (257)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCTT
T ss_pred             ceEEEEEEEEEEcCCCeEEEEEeCCCC-----CccCCCCEEEEEecCCCCceeeeeEeecCCC----CCeEEEEEEEeCC
Confidence            578999999999999999999997643     57999999999998543  579999999986    689999999875 


Q ss_pred             CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 023223          132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR  210 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~  210 (285)
                      |.+|++|+++++||+|.+. ||+|. |.++..   ...++++||||||||||++++++++...+...+++|+|++|+.++
T Consensus        73 G~~s~~l~~l~~Gd~v~v~~gp~G~-f~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~  148 (257)
T 2qdx_A           73 GPLTSRLQHLKEGDELMVSRKPTGT-LVHDDL---LPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSE  148 (257)
T ss_dssp             CTTHHHHTTCCTTCEEEECSCCBCS-CCGGGB---CSCSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGG
T ss_pred             CcchhHHHhCCCCCEEEEecCCCCC-ccCCcc---cCCCeEEEEEeceEHHHHHHHHHHHHhcCCCCeEEEEEEcCCHHH
Confidence            6899999999999999999 89998 666421   136899999999999999999998865444578999999999999


Q ss_pred             cccHHHHH-HHHH---------CCCEEEEEeeCCCCCCCccccccchHHHHhh-----hc--CCCCCcEEEEECchhHHH
Q 023223          211 MAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAK-----KI--FNPQGTGVVLCGQKQMAE  273 (285)
Q Consensus       211 ~~~~~~l~-~l~~---------~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~-----~~--~~~~~~~vyiCGp~~m~~  273 (285)
                      ++|.++|+ +|..         .++++++++++++   .+..|++++.+.+..     ..  .+..+..+|+|||++|++
T Consensus       149 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~  225 (257)
T 2qdx_A          149 LAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREP---FRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLE  225 (257)
T ss_dssp             CTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSC---CSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHH
T ss_pred             hHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCC---cccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHH
Confidence            99999999 8865         4788888888763   245788888765421     01  123678999999999999


Q ss_pred             HHHHHHHhcCC
Q 023223          274 VCYCFCLEFSA  284 (285)
Q Consensus       274 ~~~~~L~~~Gv  284 (285)
                      .+++.|.++|+
T Consensus       226 ~v~~~l~~~G~  236 (257)
T 2qdx_A          226 ETSAVLDSFGL  236 (257)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999999986

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=100.00  E-value=3e-37  Score=271.27  Aligned_cols=215  Identities=21%  Similarity=0.291  Sum_probs=175.5

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      ..|.+++|++++.+++++++++|+.++.     +.|+||||+.|+++..+  ..|+|||++.|.    ++.++|+||.++
T Consensus        17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~~~~~v~~~~   87 (271)
T 4fk8_A           17 SKFDTATVLSVHHWTDTLFSFTCTRDQA-----LRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY----EEHLEFFSIKVQ   87 (271)
T ss_dssp             -CEEEEEEEEEEEEETTEEEEEECCCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSSEEEEEECCT
T ss_pred             ccceeEEEEEEEEcCCCEEEEEEEcCCC-----CCcCCCCEEEEEccCCCceeeeeEeccCCCC----CCcEEEEEEEEC
Confidence            4689999999999999999999986643     68999999999998543  479999999986    678999999885


Q ss_pred             -CcchHHhhCCCCCCEEEEE-eecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 023223          132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK  209 (285)
Q Consensus       132 -G~~s~~L~~l~~Gd~v~i~-gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~  209 (285)
                       |.+|++|+++++||+|.+. ||+|+ |.+...   ...++++||||||||||++++++++.+.+...+++|+|++|+.+
T Consensus        88 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-~~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~  163 (271)
T 4fk8_A           88 NGPLTSRLQHLKVGDPVLIGKKPTGT-LVADNL---LPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKG  163 (271)
T ss_dssp             TCTTHHHHTTCCTTCEEEEESCCBCS-CCGGGB---CCCSEEEEEECGGGGHHHHHHTTCHHHHHHCSEEEEEECCCSHH
T ss_pred             CCchhhHHhcCCCCCEEEEecCCCcc-eecCCc---CCCCeEEEEECCEEHHHHHHHHHHHHhcCCCCCEEEEEecCCHH
Confidence             6899999999999999999 99998 545421   25789999999999999999999987655567999999999999


Q ss_pred             ccccHHHHHHHHHC----------CCEEEEEeeCCCCCCCccccccchHHHHhh---h--c--CCCCCcEEEEECchhHH
Q 023223          210 RMAYQDKFKEWESS----------GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---K--I--FNPQGTGVVLCGQKQMA  272 (285)
Q Consensus       210 ~~~~~~~l~~l~~~----------~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~---~--~--~~~~~~~vyiCGp~~m~  272 (285)
                      +++|.++|+++.++          +++++.++++++.   +..|++++.+.+..   .  .  .+.++..+|+|||++|+
T Consensus       164 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~  240 (271)
T 4fk8_A          164 ELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAML  240 (271)
T ss_dssp             HHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHH
T ss_pred             HHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHH
Confidence            99999999988764          4677777776543   45788887665421   0  1  23467899999999999


Q ss_pred             HHHHHHHHhcCC
Q 023223          273 EVCYCFCLEFSA  284 (285)
Q Consensus       273 ~~~~~~L~~~Gv  284 (285)
                      +++++.|.++|+
T Consensus       241 ~~v~~~l~~~gv  252 (271)
T 4fk8_A          241 KDTTELLKKAGL  252 (271)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999999987

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=8.5e-36  Score=266.21  Aligned_cols=219  Identities=19%  Similarity=0.282  Sum_probs=177.9

Q ss_pred             CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCC-CCCC
Q 023223           54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SASG  121 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~-~~~~  121 (285)
                      .....++|++++.+++     ++++++|+.++..    +.|+||||+.|.+++.      ..+|+|||+|.|... .+++
T Consensus        19 ~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~   94 (304)
T 2bmw_A           19 NAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN----LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK   94 (304)
T ss_dssp             TBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC----CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred             CCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc----cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCC
Confidence            3456799999999999     8999999987532    5799999999998753      246999999988521 1268


Q ss_pred             eEEEEEEEe-----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHh
Q 023223          122 AFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG  190 (285)
Q Consensus       122 ~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~  190 (285)
                      .++|+||..           .|.+|+||+++++||+|.+.||+|.+|.+..    +..++++||||||||||++++++++
T Consensus        95 ~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~~~  170 (304)
T 2bmw_A           95 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPD----DPEANVIMLAGGTGITPMRTYLWRM  170 (304)
T ss_dssp             EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCS----CTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred             EEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCC----CCCCCEEEEecCccHHHHHHHHHHH
Confidence            999999972           3789999999999999999999999765531    2468999999999999999999998


Q ss_pred             hccC---------CCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccccccchHHHHhhh----
Q 023223          191 FSSK---------ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----  254 (285)
Q Consensus       191 ~~~~---------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----  254 (285)
                      +...         ...+++|+|++|+.++++|+++|++|..+   +++++++++++++.|.+..+++++.+.+...    
T Consensus       171 ~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~  250 (304)
T 2bmw_A          171 FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ  250 (304)
T ss_dssp             HCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHH
T ss_pred             HHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHH
Confidence            7532         23689999999999999999999999873   7899999999877787778888877654211    


Q ss_pred             cCCCCCcEEEEECchhHHHHHHHHHH
Q 023223          255 IFNPQGTGVVLCGQKQMAEVCYCFCL  280 (285)
Q Consensus       255 ~~~~~~~~vyiCGp~~m~~~~~~~L~  280 (285)
                      .....+..+|+|||+.|++.++++|.
T Consensus       251 ~~~~~~~~vyvCGp~~m~~~v~~~l~  276 (304)
T 2bmw_A          251 LIKNQKTHTYICGPPPMEEGIDAALS  276 (304)
T ss_dssp             HHTSTTEEEEEEECTTHHHHHHHHHH
T ss_pred             HhhcCCcEEEEECCHHHHHHHHHHHH
Confidence            11235678999999999999877764

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=100.00  E-value=1.7e-35  Score=273.92  Aligned_cols=216  Identities=18%  Similarity=0.307  Sum_probs=180.0

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcc--cccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCCCCCeEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDI--ASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASGAFEF  125 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l--~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~~~~~l~l  125 (285)
                      ..|++++|++++.+++++++++|+.++...+  ..+.|+||||+.|+++..      ...|+|||++.|.    ++.++|
T Consensus       147 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~----~~~~~i  222 (399)
T 4g1v_A          147 PGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST----KNGLRF  222 (399)
T ss_dssp             CSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC----TTCEEE
T ss_pred             CcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC----CCeEEE
Confidence            4789999999999999999999998765332  112799999999998532      3579999999997    688999


Q ss_pred             EEEEe-------CCcchHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCC
Q 023223          126 LVKSV-------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS  197 (285)
Q Consensus       126 ~Vk~~-------~G~~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~  197 (285)
                      +||..       .|.+|+||+ ++++||+|.++||+|. |.++........++++||||||||||+++|+++++..+...
T Consensus       223 ~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~~  301 (399)
T 4g1v_A          223 AVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGD-FAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPNR  301 (399)
T ss_dssp             EEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECS-CCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTTS
T ss_pred             EEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccc-eeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCCC
Confidence            99993       478999997 8999999999999999 77753100014789999999999999999999998777778


Q ss_pred             cEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHH
Q 023223          198 DVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC  275 (285)
Q Consensus       198 ~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~  275 (285)
                      +++++|++|+.++++|.++|+++..+  +++++++++++.       |+++......  ... .+..+|+|||++|++.+
T Consensus       302 ~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~-------g~~~~~~l~~--~~~-~~~~vyvCGp~~m~~~v  371 (399)
T 4g1v_A          302 PIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE-------PLINAAFLKE--KSP-AHADVYTCGSLAFMQAM  371 (399)
T ss_dssp             CEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS-------CCCCHHHHHH--HSC-SSCEEEEEECHHHHHHH
T ss_pred             CEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC-------CcccHHHHHh--hCC-CCCEEEEECCHHHHHHH
Confidence            99999999999999999999999864  788888888753       7887654442  122 27899999999999999


Q ss_pred             HHHHHhcCC
Q 023223          276 YCFCLEFSA  284 (285)
Q Consensus       276 ~~~L~~~Gv  284 (285)
                      ++.|.++|+
T Consensus       372 ~~~L~~~Gv  380 (399)
T 4g1v_A          372 IGHLKELEH  380 (399)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999999987

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=100.00  E-value=1.2e-35  Score=260.06  Aligned_cols=205  Identities=16%  Similarity=0.203  Sum_probs=171.5

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--CeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GST  134 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~  134 (285)
                      .++|++++.+++++++++|+.++.    ...|+||||+.|++++.  ...|+|||++.|..   ++.++|+||.++ |.+
T Consensus         7 ~~~V~~~~~~t~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~   79 (262)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTLV----DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDETTG   79 (262)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGGG----GGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCTTSH
T ss_pred             ceEEEEEEEecCCEEEEEEEcCcc----cccCCCCceEEEEcCCCCceeeEEEEeeeecCC---CCEEEEEEEEecCCch
Confidence            799999999999999999997542    25799999999999863  56799999998864   789999999964 789


Q ss_pred             hHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 023223          135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ  214 (285)
Q Consensus       135 s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~  214 (285)
                      |+||+++++||+|.+.||+|++|.++..   ...++++||||||||||+++|++++.+.+  .+++|+|++|+.++++|+
T Consensus        80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~---~~~~~~lliagGtGitP~~s~l~~l~~~~--~~v~l~~~~r~~~~~~~~  154 (262)
T 1ep3_B           80 TYKLSKLESGAKVDVMGPLGNGFPVAEV---TSTDKILIIGGGIGVPPLYELAKQLEKTG--CQMTILLGFASENVKILE  154 (262)
T ss_dssp             HHHHHTCCTTCEEEEEEEESBCCCCTTC---CTTSEEEEEEEGGGSHHHHHHHHHHHHHT--CEEEEEEEESSGGGCCCH
T ss_pred             HHHHhcCCCCCEEEEEcccCCCccCCCc---cCCCeEEEEECcCcHHHHHHHHHHHHHcC--CeEEEEEEcCCHHHhhhH
Confidence            9999999999999999999997877521   13689999999999999999999987643  789999999999999999


Q ss_pred             HHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          215 DKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       215 ~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++|++|...  +++++ +  +++|.+..|++++.+.+.  .  .+...+|+|||+.|++++++ |.++|+
T Consensus       155 ~el~~l~~~--~~~~~-~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~-l~~~gv  214 (262)
T 1ep3_B          155 NEFSNLKNV--TLKIA-T--DDGSYGTKGHVGMLMNEI--D--FEVDALYTCGAPAMLKAVAK-KYDQLE  214 (262)
T ss_dssp             HHHHTSTTE--EEEEE-E--TTCSSSEESCHHHHHHHC--C--SCCSEEEEESCHHHHHHHHH-HTTTCS
T ss_pred             HHHhhhccC--cEEEE-E--CCCCCcceeehHHHHHhh--c--cCCCEEEEECCHHHHHHHHH-HHhCCC
Confidence            999886543  44433 2  345777889999866552  2  23578999999999999999 999886

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=6.1e-35  Score=261.88  Aligned_cols=223  Identities=22%  Similarity=0.314  Sum_probs=178.6

Q ss_pred             CCeeeeEEEEEeecCCC--------------eEEEEEECCCCCcccccCCCCCcEEEEEEcCC-------------Ceee
Q 023223           54 TVWTPTPLAEISPAAES--------------LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------GKPT  106 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~--------------~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~-------------~~~~  106 (285)
                      .....++|++++.++++              +++++|+.++.    .+.|+||||+.|++++.             ..+|
T Consensus        19 ~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R   94 (314)
T 2rc5_A           19 SNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS----AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVR   94 (314)
T ss_dssp             TBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT----TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCE
T ss_pred             CCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC----cCcccCCCEEEEECCCCccccCccchhhcCCCce
Confidence            34567999999999998              99999997643    25799999999999863             2568


Q ss_pred             eeeecCCCCCC-CCCCeEEEEEEEe-----------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEE
Q 023223          107 FLAIASPPSFA-SASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF  174 (285)
Q Consensus       107 ~~si~s~p~~~-~~~~~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vli  174 (285)
                      +|||+|.|... .+++.++|+||.+           .|.+|+||+++++||+|.+.||+|.+|.+...   +..++++||
T Consensus        95 ~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~---~~~~~~vlI  171 (314)
T 2rc5_A           95 LYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNT---DFSGDIMFL  171 (314)
T ss_dssp             EEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSS---CBCSCEEEE
T ss_pred             eeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCC---CCCCCEEEE
Confidence            99999998521 0268999999986           36689999999999999999999996644310   246889999


Q ss_pred             EcCcchhHHHHHHHHhhccC---CCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCC-CCccccccchH
Q 023223          175 ATGSGISPIRSLIESGFSSK---ERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGN-WSGETGYVQAA  248 (285)
Q Consensus       175 AgGtGIaP~~sil~~~~~~~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~-~~~~~g~v~~~  248 (285)
                      ||||||||+++|++++...+   ...+++|+|++|+.++++|+++|++|..+  +++++++++++++. |.+..|++++.
T Consensus       172 agGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~  251 (314)
T 2rc5_A          172 ATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHR  251 (314)
T ss_dssp             EEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHH
T ss_pred             ECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHH
Confidence            99999999999999987643   24689999999999999999999999763  89999999987554 47888898887


Q ss_pred             HHHhhh----cCCCCCcEEEEE-CchhHHHHHHHHHHhcCC
Q 023223          249 FSRAKK----IFNPQGTGVVLC-GQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       249 ~~~~~~----~~~~~~~~vyiC-Gp~~m~~~~~~~L~~~Gv  284 (285)
                      +.+...    .....+ .+|+| ||+.|++.+++.|.+.|+
T Consensus       252 l~~~~~~l~~~~~~~~-~~yvCGGp~~m~~~v~~~L~~~g~  291 (314)
T 2rc5_A          252 VREQAEAVKKILNGGG-RFYICGGPKGMEKGVIEEIQKISG  291 (314)
T ss_dssp             HHHTHHHHHHHHHHTC-EEEEEESSTTTHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHhhcCC-eEEEeCCcHHHHHHHHHHHHHHHh
Confidence            655211    111123 35999 999999999999998764

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=2.5e-34  Score=258.71  Aligned_cols=207  Identities=19%  Similarity=0.261  Sum_probs=167.2

Q ss_pred             CCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC
Q 023223           52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA  131 (285)
Q Consensus        52 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~  131 (285)
                      ++..|..++|++++.+++++++++|+.++...  ...|+||||+.|++++ +..|+|||++.|..   .+.++|+||.++
T Consensus         4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~-g~~R~ySi~s~~~~---~~~l~i~Vk~~~   77 (321)
T 2pia_A            4 QEDGFLRLKIASKEKIARDIWSFELTDPQGAP--LPPFEAGANLTVAVPN-GSRRTYSLCNDSQE---RNRYVIAVKRDS   77 (321)
T ss_dssp             TTTTCEEEEEEEEEEEETTEEEEEEECTTCCC--CCCCCTTCEEEEECTT-SCEEEEECCSCTTC---CSEEEEEEECCT
T ss_pred             CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCc--CCCCCCCCEEEEECCC-CCcEEEEeCCCCCC---CCeEEEEEEEec
Confidence            45678999999999999999999999876422  2479999999999985 47899999999874   689999999986


Q ss_pred             -Cc-chHHhh-CCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223          132 -GS-TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (285)
Q Consensus       132 -G~-~s~~L~-~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~  208 (285)
                       |. +|+||+ ++++||+|.++||+|. |.++.     ..++++|||||+||||+++|++++...+. .+++|+|++|+.
T Consensus        78 ~G~g~S~~L~~~l~~Gd~v~v~gP~g~-f~l~~-----~~~~~vliagG~GItP~~s~l~~l~~~~~-~~v~l~~~~r~~  150 (321)
T 2pia_A           78 NGRGGSISFIDDTSEGDAVEVSLPRNE-FPLDK-----RAKSFILVAGGIGITPMLSMARQLRAEGL-RSFRLYYLTRDP  150 (321)
T ss_dssp             TSCSHHHHHHHSCCTTCEEEECCCBCC-SCCCT-----TCSEEEEEEEGGGHHHHHHHHHHHHHHCS-SEEEEEEEESCG
T ss_pred             CCcchhHHHHhcCCCCCEEEEeCCccc-cccCC-----CCCCEEEEEecccHhHHHHHHHHHHHcCC-CcEEEEEEECCh
Confidence             55 899999 8999999999999997 77652     46899999999999999999999986543 789999999999


Q ss_pred             cccccHHHHHHHHH-CCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh
Q 023223          209 KRMAYQDKFKEWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE  281 (285)
Q Consensus       209 ~~~~~~~~l~~l~~-~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~  281 (285)
                      ++++|.++|++|.. .+++++  .++...   +....+++.+.+     ...+..+|+|||++|++.+++.|.+
T Consensus       151 ~~~~~~~el~~l~~~~~~~~~--~~~~~~---~g~~~~~~ll~~-----~~~~~~vyvCGP~~m~~~v~~~l~~  214 (321)
T 2pia_A          151 EGTAFFDELTSDEWRSDVKIH--HDHGDP---TKAFDFWSVFEK-----SKPAQHVYCCGPQALMDTVRDMTGH  214 (321)
T ss_dssp             GGCTTHHHHHSTTTTTTEEEE--ECTTCT---TSCCCHHHHHSS-----CCTTEEEEEESCHHHHHHHHHHTTT
T ss_pred             hhhHHHHHHhcCccCCeEEEE--ECCCcc---cCccCHHHHhcc-----cCCCCEEEEECCHHHHHHHHHHHHh
Confidence            99999999998852 255554  343221   112233332211     2356889999999999999998875

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.97  E-value=4.5e-30  Score=223.41  Aligned_cols=205  Identities=6%  Similarity=-0.021  Sum_probs=155.0

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC---CeeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSV  130 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~---~~~~~~si~s~p~~~~~~~~l~l~Vk~~  130 (285)
                      ..|..++|++++.+++++++++|+.++...+  ..++|||||.|+++..   ...|+|||++.+     .+.++|.|+.+
T Consensus         6 ~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~--~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~-----~~~~~i~~~~~   78 (252)
T 2gpj_A            6 PAPRELEVIRSTYITPHMLRITLGGAGLAGF--PADQESAYIKLLFPQAGERPLMRTYTIRQQR-----DDEIDVDFVLH   78 (252)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEESGGGTTC--CSCCTTCEEEEEECCTTSCCEEEEEECCEEE-----TTEEEEEEECC
T ss_pred             CCcEEEEEEEEEEcCCCEEEEEEEcCChhhc--CCCCCCCeEEEEcccCCCCCCCCceeeeccC-----CCEEEEEEEEe
Confidence            4678999999999999999999997643211  2589999999999853   467999999976     25788888877


Q ss_pred             C--CcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 023223          131 A--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL  208 (285)
Q Consensus       131 ~--G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~  208 (285)
                      +  |.+|+||+++++||+|.+.||.|. |.++.     ..++++|||||||||||++|++++.+   ..++.+++++++.
T Consensus        79 ~~~G~~S~~l~~l~~Gd~l~v~gP~G~-f~l~~-----~~~~~lliagGtGitPi~s~l~~l~~---~~~~~~~~~~~~~  149 (252)
T 2gpj_A           79 DTDGPASSWAKTAQVGELIQIGGPGLK-KLINF-----EADWFLLAGDMTALPAISVNLAKLPN---NAVGYAVIEVLSE  149 (252)
T ss_dssp             SSCCHHHHHHHHCCTTCEEEEEEEECC-CCCCS-----SSSEEEEEEEGGGHHHHHHHHHHSCT---TCEEEEEEEESSG
T ss_pred             CCCCcHHHHHhhCCCCCEEEEecCCCC-CcCCC-----CCceEEEEcchhhHHHHHHHHHhCCC---CCcEEEEEEECCH
Confidence            4  689999999999999999999996 76652     45789999999999999999999832   3578888889988


Q ss_pred             cccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHH-hcCC
Q 023223          209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCL-EFSA  284 (285)
Q Consensus       209 ~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~-~~Gv  284 (285)
                      +++...+   .  ..+++++++.+.... +.+  ..+.+.+.+  ......+..+|+|||++|++++++.|. ++|+
T Consensus       150 ~d~~~l~---~--~~~~~v~~~~~~~~~-~~g--~~~~~~l~~--~~~~~~~~~vy~CGP~~m~~av~~~l~~~~G~  216 (252)
T 2gpj_A          150 ADIQPLV---H--PEHVELHWVINPEAD-PEG--RPLVERIAQ--LPWLAGEPAVWIACEFNSMRALRRHFKQAHAL  216 (252)
T ss_dssp             GGCCCCC---C--CTEEEEEEEECSSCC-TTC--HHHHHHHTT--SCCCSSCEEEEEEEEHHHHHHHHHHHHHHCCC
T ss_pred             HHhhccc---C--CCCcEEEEEeCCCCC-ccc--HHHHHHHHh--ccCCCCCcEEEEEcCHHHHHHHHHHHHHhcCC
Confidence            8765321   1  125777776655422 111  123333222  111124678999999999999999998 7886

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=99.96  E-value=8e-28  Score=220.28  Aligned_cols=168  Identities=20%  Similarity=0.355  Sum_probs=136.4

Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEe---------CCcchHHhhC-CCCCCEEEEEeecCCCcccCCCCCCCCCCeEEE
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI  173 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~---------~G~~s~~L~~-l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~vl  173 (285)
                      .+|+|||+|+|..  +++.++|+||.+         .|.+|+||++ +++||+|.+.+|.|..|.+..    +..++++|
T Consensus       159 ~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~----~~~~piim  232 (374)
T 1ddg_A          159 TPRLYSIASSQAE--VENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA----NPETPVIM  232 (374)
T ss_dssp             CCEEEEBCCCTTT--SCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCS----STTSCEEE
T ss_pred             CCccceecCCCCC--CCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCC----CCCCCEEE
Confidence            4588999999852  158999999986         3789999997 999999999996654487752    34689999


Q ss_pred             EEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccccchHHH
Q 023223          174 FATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFS  250 (285)
Q Consensus       174 iAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~v~~~~~  250 (285)
                      ||||||||||++++++....+...+++|+||+|+. ++++|++||++|.+.  .++++.++|+++.    .++|+++.+.
T Consensus       233 Ia~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Srd~~----~k~yVq~~l~  308 (374)
T 1ddg_A          233 IGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQK----EKVYVQDKLR  308 (374)
T ss_dssp             ECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSSS----SCCCHHHHHH
T ss_pred             EECCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEEecCCC----CCccHHHHHH
Confidence            99999999999999998876667899999999998 789999999999886  4588888888653    4678887766


Q ss_pred             Hhhh----cCCCCCcEEEEEC-chhHHHHHHHHHHhc
Q 023223          251 RAKK----IFNPQGTGVVLCG-QKQMAEVCYCFCLEF  282 (285)
Q Consensus       251 ~~~~----~~~~~~~~vyiCG-p~~m~~~~~~~L~~~  282 (285)
                      +...    .. .++..+|+|| |+.|++++.+.|.+.
T Consensus       309 ~~~~~l~~~l-~~~~~vYvCG~p~~M~~~V~~~L~~i  344 (374)
T 1ddg_A          309 EQGAELWRWI-NDGAHIYVCGDANRMAKDVEQALLEV  344 (374)
T ss_dssp             HTHHHHHHHH-HTTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred             HhHHHHHHHH-hCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            4211    11 1467899999 999999998888654

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=99.94  E-value=1.1e-25  Score=209.86  Aligned_cols=172  Identities=20%  Similarity=0.314  Sum_probs=136.1

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCe
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT  170 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~  170 (285)
                      ..+|+|||+|+|..  .++.++|+|+.+            .|.+|+||+++++||+|.+.+|.+..|.+..    +..++
T Consensus       208 l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~----~~~~p  281 (435)
T 1f20_A          208 LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPR----NPQVP  281 (435)
T ss_dssp             CCCEEEECCSCTTT--STTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTTSSCCS----CTTSC
T ss_pred             CCCccccccCCccc--CCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCCccCCC----CCCCC
Confidence            46789999999863  147899999864            1789999999999999999995443487752    34678


Q ss_pred             EEEEEcCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHHCC--CEEEEEeeCCCCCCCccc
Q 023223          171 VLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGET  242 (285)
Q Consensus       171 ~vliAgGtGIaP~~sil~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~  242 (285)
                      ++|||||||||||++++++.+..     ....+++|+||+|+.+ +++|++||++|...+  ++++.++|++++.|   +
T Consensus       282 iilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~~---k  358 (435)
T 1f20_A          282 CILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---K  358 (435)
T ss_dssp             EEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---C
T ss_pred             EEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCCC---C
Confidence            99999999999999999998753     3568899999999987 789999999998874  47888888875433   6


Q ss_pred             cccchHHHHh-hh----cCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          243 GYVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       243 g~v~~~~~~~-~~----~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      +|+++.+.+. ..    .....+..+|+|||+.|++++.+.|.+.+
T Consensus       359 ~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i~  404 (435)
T 1f20_A          359 KYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIM  404 (435)
T ss_dssp             CCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHH
Confidence            7888876543 11    11125678999999999999999987754

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=99.93  E-value=7.7e-26  Score=215.55  Aligned_cols=173  Identities=17%  Similarity=0.289  Sum_probs=133.0

Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEe-----------C-CcchHHhhCC-----------CCCC-------EEEEEeec
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSV-----------A-GSTAEVLCGL-----------KKGD-------VVEISQVM  153 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~-----------~-G~~s~~L~~l-----------~~Gd-------~v~i~gP~  153 (285)
                      .+|+|||+|+|..  +++.++|+||.+           . |.+|+||+++           ++|+       .|.+.+|.
T Consensus       290 ~~R~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~  367 (539)
T 2qtl_A          290 QPRPYSCASSSLF--HPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRT  367 (539)
T ss_dssp             CCEEEECCSCTTT--STTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECS
T ss_pred             cceEEeecCCccC--CCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeee
Confidence            4689999999852  168999999986           1 6789999986           8999       99999999


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc------CCCCcEEEEEccCCc-cccccHHHHHHHHHC--C
Q 023223          154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS------KERSDVRLYYGARNL-KRMAYQDKFKEWESS--G  224 (285)
Q Consensus       154 G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~------~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~  224 (285)
                      |..|.+..    +..++++|||+|||||||++++++....      ....+++||||+|+. ++++|++||++|.+.  .
T Consensus       368 g~~F~Lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~  443 (539)
T 2qtl_A          368 TNSFHLPD----DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL  443 (539)
T ss_dssp             CCCCCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS
T ss_pred             CCCccCCc----cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC
Confidence            85687753    3467999999999999999999985421      146789999999999 699999999999886  4


Q ss_pred             CEEEEEeeCCCC--CCCccccccchHHHHhhhc----CCCCCcEEEEECch-hHHHHHHHHHHhc
Q 023223          225 VKIVPVLSQPDG--NWSGETGYVQAAFSRAKKI----FNPQGTGVVLCGQK-QMAEVCYCFCLEF  282 (285)
Q Consensus       225 ~~v~~~~s~~~~--~~~~~~g~v~~~~~~~~~~----~~~~~~~vyiCGp~-~m~~~~~~~L~~~  282 (285)
                      ++++.++|+++.  .|.+.+|||++.+.+....    ....+..+|+|||+ .|++++.+.|.+.
T Consensus       444 ~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~i  508 (539)
T 2qtl_A          444 THLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQI  508 (539)
T ss_dssp             CEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            589999998654  4778899999887663211    11246789999996 9999999888753

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=99.93  E-value=5.2e-26  Score=209.37  Aligned_cols=183  Identities=21%  Similarity=0.418  Sum_probs=142.8

Q ss_pred             CCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-----------CcchHHhhCCCCCCEEE--EEeecC
Q 023223           88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-----------GSTAEVLCGLKKGDVVE--ISQVMG  154 (285)
Q Consensus        88 ~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-----------G~~s~~L~~l~~Gd~v~--i~gP~G  154 (285)
                      ...+||++.+. + ...+|+|||+|+|..  +++.++|+|+.++           |.+|+||+++++||.|.  +++|.|
T Consensus       156 ~~p~~~~l~~l-p-~l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g  231 (393)
T 4dql_A          156 EMKFSEFIALL-P-SIRPRYYSISSSPRV--DEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS  231 (393)
T ss_dssp             CCCHHHHHHTS-C-BCCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS
T ss_pred             CCCHHHHHHhC-C-CCcceeeeccccccc--cCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC
Confidence            56778888763 3 367899999999963  1478999998762           66899999999999998  689999


Q ss_pred             CCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCC-ccccccHHHHHHHHHC-CCEEE
Q 023223          155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARN-LKRMAYQDKFKEWESS-GVKIV  228 (285)
Q Consensus       155 ~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~---~~~-~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~-~~~v~  228 (285)
                      . |.+..    +..++++|||+|||||||++++++..   +.+ ...+++|+||+|+ .++++|++||++|.+. +++++
T Consensus       232 ~-F~lp~----~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l~l~  306 (393)
T 4dql_A          232 E-FTLPK----DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLH  306 (393)
T ss_dssp             C-CCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSCEEE
T ss_pred             C-cccCc----cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCeEEE
Confidence            7 77752    34679999999999999999999842   222 3468999999999 5899999999999876 68999


Q ss_pred             EEeeCCCCCCCccccccchHHHHhhhc---CCCCCcEEEEECc-hhHHHHHHHHHHhc
Q 023223          229 PVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQ-KQMAEVCYCFCLEF  282 (285)
Q Consensus       229 ~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~vyiCGp-~~m~~~~~~~L~~~  282 (285)
                      +++|+++..   .++|+++.+.+....   ...++..+|+||| +.|.++++++|.+.
T Consensus       307 ~a~Sr~~~~---~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i  361 (393)
T 4dql_A          307 TAFSRMPNQ---PKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKS  361 (393)
T ss_dssp             EEESSCTTS---CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCC---CCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHH
Confidence            999985432   467888876553211   0125789999999 57778888887753

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=99.92  E-value=2.7e-24  Score=210.60  Aligned_cols=170  Identities=21%  Similarity=0.329  Sum_probs=135.2

Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEEeecCCCcccCCCCCCCCCCeE
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTV  171 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~~~~~  171 (285)
                      .+|+|||+|+|..  .++.++|+|+.+            .|.+|+||+++++||+|.+.+|.+..|.+..    +..+++
T Consensus       430 ~~R~YSIsSsp~~--~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~----~~~~pi  503 (688)
T 1tll_A          430 QPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPR----NPQVPC  503 (688)
T ss_dssp             CCEEEEBCSCTTT--STTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGSCCS----CTTSCE
T ss_pred             ceeEEeecCCccc--CCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcccCc----CCCCCE
Confidence            4689999999862  147899999864            1679999999999999999995443487752    346789


Q ss_pred             EEEEcCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHHCC--CEEEEEeeCCCCCCCcccc
Q 023223          172 LIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETG  243 (285)
Q Consensus       172 vliAgGtGIaP~~sil~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~~~~g  243 (285)
                      +|||||||||||++++++.+..     ....+++|+||+|+.+ +++|++||++|...+  +++++++|++++.|   .+
T Consensus       504 IlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a~Sr~~~~~---k~  580 (688)
T 1tll_A          504 ILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRP---KK  580 (688)
T ss_dssp             EEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEEESSCTTSC---CC
T ss_pred             EEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEEECCCCCCC---cc
Confidence            9999999999999999998753     3568899999999998 789999999998864  47888899876543   57


Q ss_pred             ccchHHHHh-hh----cCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          244 YVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       244 ~v~~~~~~~-~~----~~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      |+++.+.+. ..    .....+..+|+|||+.|++.+.+.|.+.
T Consensus       581 yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i  624 (688)
T 1tll_A          581 YVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI  624 (688)
T ss_dssp             CHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            888766543 11    1112567999999999999999998875

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.91  E-value=1e-25  Score=182.36  Aligned_cols=132  Identities=12%  Similarity=0.184  Sum_probs=96.6

Q ss_pred             CCCCCE-EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 023223          141 LKKGDV-VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE  219 (285)
Q Consensus       141 l~~Gd~-v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~  219 (285)
                      +++||+ +.++||+|++|.++      ..++++|||||+||||+++|++++.+.+  .+++++ ++|+.++++|+++|++
T Consensus         1 L~~Gd~vl~v~gP~G~~f~~~------~~~~~llIaGG~GItPl~sm~~~l~~~~--~~v~l~-g~r~~~d~~~~~el~~   71 (158)
T 3lrx_A            1 MKEGDSLLNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEIG--NDVTTL-HVTFEPMVILKEELEK   71 (158)
T ss_dssp             -----------CCCCCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHHT--CEEEEE-EECBGGGCCSHHHHHH
T ss_pred             CcCCCEeeEEECCCCCCCccC------CCCeEEEEEccCcHHHHHHHHHHHHhcC--CcEEEE-EeCCHHHhhHHHHHHH
Confidence            578999 69999999977553      4679999999999999999999987543  489999 9999999999999999


Q ss_pred             HHHCCCEEEEEeeCC----CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          220 WESSGVKIVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       220 l~~~~~~v~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      |.. ++.+.++++++    +++|.+..|++++.+.+.  ..+.+...+|+|||+.|++++.+.|.++|+
T Consensus        72 l~~-~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~--l~~~~~~~vy~CGP~~mm~~v~~~l~~~Gv  137 (158)
T 3lrx_A           72 AVT-RHIVEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGV  137 (158)
T ss_dssp             HSS-EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH--HHHSCCSEEEEESCHHHHHHHHHHHGGGTC
T ss_pred             HHh-ceEEEEeeccccccCCCCCCCCcccccHHHHHh--hccCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            865 34333333432    345677889998865542  222245689999999999999999999997

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=99.91  E-value=1.1e-23  Score=196.78  Aligned_cols=169  Identities=18%  Similarity=0.334  Sum_probs=133.5

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCCCC------EEEEEeecCCCcccCCCCCCC
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGD------VVEISQVMGRGFAVDRIQPPD  166 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~Gd------~v~i~gP~G~~f~~~~~~~~~  166 (285)
                      ..+|+|||+|+|..  .++.++|+|+.+          .|.+|+||+++.+|+      .|.+.+|.|. |.+..    +
T Consensus       232 l~pR~YSIsSsp~~--~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~-F~lp~----~  304 (458)
T 3qfs_A          232 LQARYYSIASSSKV--HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----K  304 (458)
T ss_dssp             CCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCS-CCCCS----S
T ss_pred             CcceeEeeccCccc--CCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCC-cccCC----C
Confidence            56799999999863  157899998643          278999999988765      6999999996 87753    3


Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCCc-cccccHHHHHHHHHCC--CEEEEEeeCCCCCCC
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWS  239 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~---~~~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--~~v~~~~s~~~~~~~  239 (285)
                      ..++++|||+|||||||++++++..   +.+ ...+++|+||+|+. ++++|++||++|.+.+  +++..++|+++    
T Consensus       305 ~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~----  380 (458)
T 3qfs_A          305 ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQ----  380 (458)
T ss_dssp             TTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSS----
T ss_pred             CCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCC----
Confidence            4679999999999999999999853   222 45789999999996 7999999999998864  48889998864    


Q ss_pred             ccccccchHHHHhhhcC---CCCCcEEEEECch-hHHHHHHHHHHhc
Q 023223          240 GETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEVCYCFCLEF  282 (285)
Q Consensus       240 ~~~g~v~~~~~~~~~~~---~~~~~~vyiCGp~-~m~~~~~~~L~~~  282 (285)
                      +.++||++.+.+.....   ..++..+|+|||+ .|++++++.|.+.
T Consensus       381 ~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i  427 (458)
T 3qfs_A          381 SHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDI  427 (458)
T ss_dssp             SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             CCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            35789998876632111   0257899999995 8999999888763

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=99.91  E-value=1.4e-25  Score=219.70  Aligned_cols=183  Identities=21%  Similarity=0.325  Sum_probs=144.0

Q ss_pred             CCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEe-------------CCcchHHhhCCCC------------
Q 023223           89 TRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKK------------  143 (285)
Q Consensus        89 ~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~-------------~G~~s~~L~~l~~------------  143 (285)
                      ..|+||+...++. ..+|+|||+|+|..  .++.++|+|+.+             .|.+|+||+++++            
T Consensus       414 ~~p~~~l~~~lp~-l~~R~YSIsSsp~~--~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~  490 (682)
T 2bpo_A          414 TVPMQFLVESVPQ-MTPRYYSISSSSLS--EKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL  490 (682)
T ss_dssp             TSCHHHHHHHSCB-CCCEEEEBCSCTTT--CTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred             CCCHHHHHHhCcc-cccccccccCCccc--CCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence            4688888777764 67899999999963  148899988642             2789999998776            


Q ss_pred             CCEEEEEeecCCC-------------cccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC----------CCCcEE
Q 023223          144 GDVVEISQVMGRG-------------FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVR  200 (285)
Q Consensus       144 Gd~v~i~gP~G~~-------------f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~----------~~~~v~  200 (285)
                      |+.|.+.||+|.+             |.+    |.+...+++|||+|||||||++++++.+...          ...+++
T Consensus       491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~L----p~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~  566 (682)
T 2bpo_A          491 PVHYDLNGPRKLFANYKLPVHVRRSNFRL----PSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHI  566 (682)
T ss_dssp             CCCCCSSCGGGTTTTTEECEEEECCSCCC----CSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEE
T ss_pred             ccceeeccCcCcccCceEEEEEecCcccC----CCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEE
Confidence            9999999999983             222    2234689999999999999999999987432          257899


Q ss_pred             EEEccCCccccccHHHHHHHHH---CCCEEEEEeeCCCCCCCccccccchHHHHhhh----cCCCCCcEEEEECc-hhHH
Q 023223          201 LYYGARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQ-KQMA  272 (285)
Q Consensus       201 l~~~~r~~~~~~~~~~l~~l~~---~~~~v~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~vyiCGp-~~m~  272 (285)
                      ||||+|+.++++|++||++|..   .++++++++|+++.   +.++||++.+.+...    .. .++..+|+||| +.|+
T Consensus       567 L~fG~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l-~~~~~vYvCGpa~~M~  642 (682)
T 2bpo_A          567 LFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMI-NNGAFIYVCGDAKGMA  642 (682)
T ss_dssp             EEEEESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHH-TTTCEEEEEECSTTHH
T ss_pred             EEEecCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHH-hCCcEEEEeCCchHhH
Confidence            9999999999999999999953   25789999998532   468899988765321    12 25689999999 7999


Q ss_pred             HHHHHHHHhc
Q 023223          273 EVCYCFCLEF  282 (285)
Q Consensus       273 ~~~~~~L~~~  282 (285)
                      +++.+.|.+.
T Consensus       643 ~~V~~~L~~i  652 (682)
T 2bpo_A          643 KGVSTALVGI  652 (682)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888764

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=99.89  E-value=6.2e-23  Score=198.90  Aligned_cols=167  Identities=18%  Similarity=0.365  Sum_probs=131.6

Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEe----------CCcchHHhhCCCC-CC-----EEEEEeecCCCcccCCCCCCCC
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKK-GD-----VVEISQVMGRGFAVDRIQPPDE  167 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~----------~G~~s~~L~~l~~-Gd-----~v~i~gP~G~~f~~~~~~~~~~  167 (285)
                      .+|+|||+|+|...  ++.++|+|+.+          .|.+|+||+++.+ |+     .|.+.+|.|. |.+..    +.
T Consensus       393 ~pR~YSIsSsp~~~--~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~-F~lp~----~~  465 (618)
T 3qe2_A          393 QARYYSIASSSKVH--PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----KA  465 (618)
T ss_dssp             CCEEEECCSCTTTC--TTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCS-CCCCS----ST
T ss_pred             ccceeccccCCcCC--CCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCc-ccCCC----CC
Confidence            47899999998631  47888888542          2789999999888 88     9999999996 87752    34


Q ss_pred             CCeEEEEEcCcchhHHHHHHHHhhcc---C-CCCcEEEEEccCCc-cccccHHHHHHHHHC-CC-EEEEEeeCCCCCCCc
Q 023223          168 YPTVLIFATGSGISPIRSLIESGFSS---K-ERSDVRLYYGARNL-KRMAYQDKFKEWESS-GV-KIVPVLSQPDGNWSG  240 (285)
Q Consensus       168 ~~~~vliAgGtGIaP~~sil~~~~~~---~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-~~-~v~~~~s~~~~~~~~  240 (285)
                      ..+++|||+|||||||++++++.+..   + ...+++|+||+|+. ++++|+++|++|.+. .+ +++.++|+++.    
T Consensus       466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~----  541 (618)
T 3qe2_A          466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS----  541 (618)
T ss_dssp             TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----
T ss_pred             CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCC----
Confidence            67899999999999999999997632   1 34789999999998 599999999999875 34 89999998653    


Q ss_pred             cccccchHHHHhhh----cCCCCCcEEEEECch-hHHHHHHHHHHhc
Q 023223          241 ETGYVQAAFSRAKK----IFNPQGTGVVLCGQK-QMAEVCYCFCLEF  282 (285)
Q Consensus       241 ~~g~v~~~~~~~~~----~~~~~~~~vyiCGp~-~m~~~~~~~L~~~  282 (285)
                      .++|+++.+.+...    .. ..+..+|+|||+ .|++.+.+.|.+.
T Consensus       542 ~k~yVqd~l~~~~~~l~~~l-~~~a~vYvCGp~~~M~~~V~~~L~~i  587 (618)
T 3qe2_A          542 HKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYDI  587 (618)
T ss_dssp             SCCCHHHHHHHTHHHHHHHH-HHTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhHHHHHHHH-hCCcEEEEECCchHHHHHHHHHHHHH
Confidence            47899988765321    11 346799999996 9999999888753

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.89  E-value=3e-24  Score=170.64  Aligned_cols=126  Identities=10%  Similarity=0.146  Sum_probs=97.8

Q ss_pred             EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCE
Q 023223          147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVK  226 (285)
Q Consensus       147 v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~  226 (285)
                      +.+.||+|++|..+      ..++++|||||+||||+++|++++.+.  ..+++++ ++|+.++++|+++|++|.. .+.
T Consensus         3 ~~v~GP~G~~~~~~------~~~~~llIaGG~GiaPl~sm~~~l~~~--~~~v~l~-g~R~~~~~~~~~el~~l~~-~~~   72 (142)
T 3lyu_A            3 LNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEI--GNDVTTL-HVTFEPMVILKEELEKAVT-RHI   72 (142)
T ss_dssp             ----CCCSCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHT--TCEEEEE-EEEEGGGCCSHHHHHTTSS-EEE
T ss_pred             eeeeCCCCCCccCC------CCCeEEEEECcCcHHHHHHHHHHHHhc--CCcEEEE-EeCCHHHhhHHHHHHHHHh-heE
Confidence            57899999977653      468999999999999999999998764  3589999 9999999999999998864 344


Q ss_pred             EEEEeeCC----CCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          227 IVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       227 v~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +.++++++    +++|.+..|++++.+.+.  ..+.+...+|+|||+.|++.+.+.+++.||
T Consensus        73 ~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~--~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~  132 (142)
T 3lyu_A           73 VEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGV  132 (142)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHHHHH--HHSSCCSEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             EEEeecccccCCCCCCCCCccchhHHHHHh--cccCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence            44444442    345777889998776553  223345689999999999999999999987

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.8e-21  Score=159.42  Aligned_cols=133  Identities=20%  Similarity=0.272  Sum_probs=98.1

Q ss_pred             EEEEeecCCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhcc-------CCCCcEEEEEccCCccccc-cHHHHH
Q 023223          147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-------KERSDVRLYYGARNLKRMA-YQDKFK  218 (285)
Q Consensus       147 v~i~gP~G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~-------~~~~~v~l~~~~r~~~~~~-~~~~l~  218 (285)
                      |.|.||+|.++ .+.    ...++++||||||||||+++|+++++..       ....+|+|+|++|+.++++ |+++|+
T Consensus         1 v~v~GP~G~~~-~~~----~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~   75 (186)
T 3a1f_A            1 IAVDGPFGTAS-EDV----FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQ   75 (186)
T ss_dssp             CCTTSTTSHHH-HHH----TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHH
T ss_pred             CeEECCCCCCc-cCh----hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHH
Confidence            35689999844 321    2578999999999999999999998864       2468899999999999997 999999


Q ss_pred             HHHHC--------CCEEEEEeeCCCCC---------------CCc-----cccccchHH-HHhh-hcCCCCCcEEEEECc
Q 023223          219 EWESS--------GVKIVPVLSQPDGN---------------WSG-----ETGYVQAAF-SRAK-KIFNPQGTGVVLCGQ  268 (285)
Q Consensus       219 ~l~~~--------~~~v~~~~s~~~~~---------------~~~-----~~g~v~~~~-~~~~-~~~~~~~~~vyiCGp  268 (285)
                      ++...        +++++++++++...               +.+     ..|+++... .+.. ......+..||+|||
T Consensus        76 ~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP  155 (186)
T 3a1f_A           76 LLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP  155 (186)
T ss_dssp             HHHHHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred             HHHHHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence            98762        68898888875321               111     125655432 2211 111124678999999


Q ss_pred             hhHHHHHHHHHHhcCC
Q 023223          269 KQMAEVCYCFCLEFSA  284 (285)
Q Consensus       269 ~~m~~~~~~~L~~~Gv  284 (285)
                      ++|++++++.|.+.|+
T Consensus       156 ~~m~~~v~~~l~~~g~  171 (186)
T 3a1f_A          156 EALAETLSKQSISNSE  171 (186)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	2e-11
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	5e-11
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	9e-11
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	3e-10
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	3e-10
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	8e-10
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	9e-10
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	4e-09
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	6e-09
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	2e-08
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	3e-08
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	5e-08
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	1e-07
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	5e-07
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	2e-06
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	4e-06
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	7e-06
d1tvca1	109	b.43.4.2 (A:2-110) Methane monooxygenase component	5e-04
d1krha1	100	b.43.4.2 (A:106-205) Benzoate dioxygenase reductas	7e-04
d1gvha2	107	b.43.4.2 (A:147-253) Flavohemoglobin, central doma	8e-04

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 165 PDEYPTVLIFATGSGISPIRSLIESGFSS--KERSDVRLYYGARNLKRMAYQDKFKEWES 222
                 + +   GSGI+P+  +I++      ++ +++ L Y  R    +  +D+   W +
Sbjct: 9   QRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAA 68

Query: 223 S------GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCY 276
                     ++  + +P+  W    G+V  A  R         T  + CG   M +   
Sbjct: 69  EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQFAI 128

Query: 277 CFCLE 281
              LE
Sbjct: 129 SPNLE 133

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 57.6 bits (138), Expect = 5e-11
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 169 PTVLIFATGSGISPIRSLIES-----GFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS 223
             ++I ATG+G++P R  +         + +      L+ G  N   + Y ++F  +   
Sbjct: 5   THIMI-ATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQ 63

Query: 224 G---VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN---PQGTGVVLCGQKQMAE 273
                +    LS+   N SG   YVQ                G  +  CG K M  
Sbjct: 64  YPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMP 119

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 57.2 bits (137), Expect = 9e-11
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIES-----GFSSKERSDVRLYYGARNLKRMAYQDKFK 218
           P D   T+++  TG+GI+P RS +           K      L+ G      + Y+++F+
Sbjct: 4   PKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFE 63

Query: 219 EWESSGV---KIVPVLSQPDGNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQM 271
           + +       ++   +S+   N  GE  Y+Q   ++      ++     T V +CG K M
Sbjct: 64  KMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGM 123

Query: 272 AE 273
            +
Sbjct: 124 EK 125

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 162 IQPPDEYPT-------VLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAY 213
           I+P  +          V + A G+GI+P+  +I +     +  +   L +  +  K +  
Sbjct: 5   IRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILL 64

Query: 214 QDKFKEWE---SSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQ 270
           + + +E     S+  K+   L +    W    G+V     R       +   V++CG   
Sbjct: 65  RPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPP 124

Query: 271 MAE 273
           M +
Sbjct: 125 MIQ 127

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 55.7 bits (133), Expect = 3e-10
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIE---------SGFSSKERSDVRLYYGARNLKRMAYQ 214
           P D    V++ A G+GI+P+R+ +          +    + +    L +G      + Y+
Sbjct: 2   PDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYK 61

Query: 215 DKFKEWESSG---VKIVPVLSQPDGNWSGETGYVQ----AAFSRAKKIFNPQGTGVVLCG 267
           ++ +E +       ++   +S+   N  G   Y+Q        +  ++   Q T   +CG
Sbjct: 62  EELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICG 121

Query: 268 QKQMAE 273
              M E
Sbjct: 122 PPPMEE 127

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 8e-10
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 165 PDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSG 224
            D+ P  LI + G G +P+ +++++   +   + V  ++ A N    A+ D+ KE   S 
Sbjct: 4   ADDTPVTLI-SAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSL 62

Query: 225 --VKIVPVLSQPDGNWSGETGYVQAAF---SRAKKIFNPQGTGVVLCGQKQMAE 273
                     QP      +  +        S+ +  F+       LCG     +
Sbjct: 63  PRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQ 116

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVKIV 228
           +++ A G+G S  RS++ +  +     D+ +Y+G R  + +    + +    +  G+++V
Sbjct: 8   MILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVV 67

Query: 229 PVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
           PV+ QP+  W G TG V  A    +         + + G+ +MA+
Sbjct: 68  PVVEQPEAGWRGRTGTVLTAV--LQDHGTLAEHDIYIAGRFEMAK 110

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERS----DVRLYYGARNLKR-MAYQDKFK 218
           P      V++   G+GI+P    I+     +E+     +  LYYG R       Y+++  
Sbjct: 3   PFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELA 62

Query: 219 EWESSGV--KIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG 267
            +   G   ++    S+   +       ++       K+ +  G  + + G
Sbjct: 63  RFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAG 113

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 2/110 (1%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWES 222
           P +    V++   G+GI+P R+ ++   +      +   +      +   YQ +++ +  
Sbjct: 2   PANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVK 61

Query: 223 SGV-KIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271
            GV   + +    D                    +   G  + +CG    
Sbjct: 62  EGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANR 111

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 10/120 (8%)

Query: 164 PPDEYPTVLIFATGSGISPIRSLIESGFSSKERSD------VRLYYGARNLKRMAYQDKF 217
           P +     ++   G+GI+P RS  +      +         V ++   ++     Y+++ 
Sbjct: 5   PRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREET 64

Query: 218 KEWESSG--VKIVPVLS--QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
            + ++ G   ++    S          +    +       +    QG  + +CG   MA 
Sbjct: 65  LQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAA 124

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVK 226
           P VLI + G G++P+ S+++          V   +GARN    A +D+ +E       + 
Sbjct: 7   PIVLI-SGGVGLTPMVSMLKV-ALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLD 64

Query: 227 IVPVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQKQMAEVCYCFCLE 281
           +     QP         Y        K+I            +CG      + +     
Sbjct: 65  LFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALKN 122

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 165 PDEYPT--VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE- 221
            D  P   + + +TG+G++P  SLI+     +    V L +G R +  +AYQ    E   
Sbjct: 2   SDLLPGKHLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHLP 61

Query: 222 ---------SSGVKIVPVLSQPDGNWSGETGYVQAA----FSRAKKIFNPQGTGVVLCGQ 268
                       +   P +++   +  G    +  +            NPQ    ++CG 
Sbjct: 62  QSEYFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGS 121

Query: 269 KQMAE 273
             M +
Sbjct: 122 PSMLD 126

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 10/115 (8%)

Query: 164 PPDEYPT---VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW 220
           P  E  +   +LI   G G+ P+  L +     K    + +  G  +      +++F   
Sbjct: 1   PVAEVTSTDKILIIGGGIGVPPLYELAKQ--LEKTGCQMTILLGFASENVKILENEFSNL 58

Query: 221 ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVC 275
           ++     V +    D    G  G+V    +      +   T       K +A+  
Sbjct: 59  KN-----VTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKY 108

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 1/111 (0%)

Query: 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPV 230
           VL+ A G+GI+P  S+++          VRL +G      +   ++    +         
Sbjct: 8   VLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYR 67

Query: 231 LSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE 281
                     E               N     V LCG   M E    +   
Sbjct: 68  TVVAHAESQHERKG-YVTGHIEYDWLNGGEVDVYLCGPVPMVEAVRSWLDT 117

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 165 PDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSG 224
                + ++ A G GI+P+ S+      ++     RLYY  R+ +  A+ D+    E   
Sbjct: 5   DKRAKSFILVAGGIGITPMLSMARQ-LRAEGLRSFRLYYLTRDPEGTAFFDELTSDEWRS 63

Query: 225 -VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273
            VKI      P   +   + + ++               V  CG + + +
Sbjct: 64  DVKIHHDHGDPTKAFDFWSVFEKS----------KPAQHVYCCGPQALMD 103

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 166 DEYP---TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN----LKRMAYQDKFK 218
           DE P   T+ + ATG+ I P  S++  G       ++ L + AR           Q+  K
Sbjct: 1   DEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK 60

Query: 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI----FNPQGTGVVLCGQKQMAE 273
            +E        V  +                   +       N + + V+LCG  QM  
Sbjct: 61  RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVR 119

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW--ESSGVK 226
           P   + A G+G++P+ S++         ++ R+Y+G      + Y D+ K        + 
Sbjct: 10  PRYFV-AGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLT 68

Query: 227 IVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE 281
           +   +  P G+W GE G    A  R     +     + LCG   M +        
Sbjct: 69  VKACVWHPSGDWEGEQGSPIDAL-REDLESSDANPDIYLCGPPGMIDAACELVRS 122

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 109

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHT-RAGQYLQLRVVDVGKPTFLAIASPPSFASA 119
           +  ++  + +     +                GQ++ L +         + A+ P+    
Sbjct: 15  VVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP--- 71

Query: 120 SGAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMG 154
            G  EFL++ +     +  +    + G V+ +   +G
Sbjct: 72  EGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLG 108

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 100

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 35.9 bits (82), Expect = 7e-04
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 61  LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASAS 120
           LA +   ++S     I + D       H  AGQY+ + +    +    + +S P      
Sbjct: 8   LARVENLSDSTITFDIQLDDGQPDI--HFLAGQYVNVTLPGTTETRSYSFSSQPGN---- 61

Query: 121 GAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGF 157
               F+V++V     +  +    K GD +  +   G  +
Sbjct: 62  RLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFY 100

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]} Length = 107

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 56  WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPS 115
                +   +P +  +    ++  D   +A    R GQYL + +   G P         +
Sbjct: 6   TRDFRIVAKTPRSALITSFELEPVDGGAVAEY--RPGQYLGVWLKPEGFPHQEIRQYSLT 63

Query: 116 FASASGAFEFLVKSVAGS--TAEVLCGLKKGDVVEISQVMGRGF 157
                  +   VK   G   +  +      GDVV++    G  F
Sbjct: 64  RKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFF 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.93
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.92
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.91
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.9
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.86
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.86
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.86
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.85
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.84
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.83
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.82
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.81
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.81
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	99.81
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.8
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.79
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	99.79
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.78
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.78
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.77
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.76
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.76
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.75
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.75
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.75
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.75
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.73
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.71
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.66
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.65
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.47
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	97.61
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	96.77
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	93.98

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.93  E-value=4.5e-26  Score=179.10  Aligned_cols=118  Identities=19%  Similarity=0.406  Sum_probs=106.2

Q ss_pred             CCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHH--CCCEEEEEeeCCCCCCCcccc
Q 023223          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETG  243 (285)
Q Consensus       166 ~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~~~v~~~~s~~~~~~~~~~g  243 (285)
                      +..++++||||||||||+++|++++++.+...+|+|+|++|+.++++|+++|++|..  .+++++.++++++++|.+..|
T Consensus         6 ~~~~p~vliagGtGItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g   85 (141)
T d1tvca2           6 RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQG   85 (141)
T ss_dssp             CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSSTTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSS
T ss_pred             CCCCcEEEEECchhHHHHHHHHHHHHHcCCCCceEEEeecccchhhhhHHHHHHHHhhccccccceeecccccCcCCccc
Confidence            457789999999999999999999998888889999999999999999999999976  489999999999999999999


Q ss_pred             ccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          244 YVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ++++.+.+... ....+..+|+|||++|++++++.|.++|+
T Consensus        86 ~~~~~~~~~~~-~~~~~~~vyiCGp~~m~~~v~~~l~~~Gv  125 (141)
T d1tvca2          86 SPIDALREDLE-SSDANPDIYLCGPPGMIDAACELVRSRGI  125 (141)
T ss_dssp             SSSHHHHHHHH-HSSSSSEEEEESSHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHhcc-cccccceeeccCCHHHHHHHHHHHHHcCC
Confidence            99998777432 23456789999999999999999999987

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.92  E-value=4.3e-25  Score=171.68  Aligned_cols=115  Identities=20%  Similarity=0.294  Sum_probs=101.2

Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccc
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY  244 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~  244 (285)
                      ..+++|||||||||||+++|++++.+.+...+|+|+|++|+.++++|.++|++|.++  ++++++++++++ .|.+..|+
T Consensus         4 ~~rplv~IAgG~GItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~-~~~~~~g~   82 (133)
T d1krha2           4 VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAE-SQHERKGY   82 (133)
T ss_dssp             CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHHHHHCTTEEEEEEETTCC-SSSSEESC
T ss_pred             CCCCEEEEEccHhHHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHHHHhCCceeeeeeeeccc-ccccccch
Confidence            567899999999999999999999887878899999999999999999999999874  899999888864 57788899


Q ss_pred             cchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       245 v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +++.+.++  ..+..+..||+|||++|++++++.|.++|+
T Consensus        83 v~~~i~~~--~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv  120 (133)
T d1krha2          83 VTGHIEYD--WLNGGEVDVYLCGPVPMVEAVRSWLDTQGI  120 (133)
T ss_dssp             SGGGCCGG--GGGGGCSEEEEEEEHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHh--hcccccceEEEECCHHHHHHHHHHHHHcCC
Confidence            98876653  344567889999999999999999999987

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.3e-24  Score=165.70  Aligned_cols=117  Identities=25%  Similarity=0.453  Sum_probs=104.6

Q ss_pred             CCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCcccc
Q 023223          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETG  243 (285)
Q Consensus       166 ~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g  243 (285)
                      ++.+++|||||||||||+++|++++++.+...+|.|+|++|+.++++|++++.+|..+  ++.+..+.+++.+.|.+..|
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g   82 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTG   82 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTHHHHHHHHHHCTTEEEEEEESSCCTTCCSEES
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHcccccceeEEEecccHhHHHHHHHHHHHHHhcCccceeeeecccCcccccccC
Confidence            4678999999999999999999999988888899999999999999999999999875  67788888888889999999


Q ss_pred             ccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHH-HhcCC
Q 023223          244 YVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFC-LEFSA  284 (285)
Q Consensus       244 ~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L-~~~Gv  284 (285)
                      ++++.+.+.  ..+.++..+|+|||+.|++.+.+.| .++|+
T Consensus        83 ~~~~~~~~~--~~~~~~~~~yvCGp~~m~~~~~~~L~~~~G~  122 (135)
T d1qfja2          83 TVLTAVLQD--HGTLAEHDIYIAGRFEMAKIARDLFCSERNA  122 (135)
T ss_dssp             CHHHHHHHH--CSCCTTCEEEEESCHHHHHHHHHHHHHHSCC
T ss_pred             chHHHHHHh--ccCcccCceEeeCCHHHHHHHHHHHHHHcCC
Confidence            999988773  5566788999999999999999987 57886

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-23  Score=166.53  Aligned_cols=118  Identities=18%  Similarity=0.318  Sum_probs=101.7

Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCCCccc
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGET  242 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~~~~~  242 (285)
                      ..++++|||||||||||++|++++++. ....+++|+|++|+.++++|+++|++|..+   +++++...+++.+.|.+..
T Consensus        17 ~~k~i~lIagGtGItP~~s~l~~~l~~~~~~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~   96 (147)
T d1umka2          17 TVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQ   96 (147)
T ss_dssp             ECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEE
T ss_pred             cCCeEEEEECCeecchHHHHHHHHHhcCCCCceEEEEEEeCccccchhHHHHhhhhhhcCcceEEEEEecccccCcccce
Confidence            468899999999999999999998865 456789999999999999999999999763   7888888999999999999


Q ss_pred             cccchHHHHhhhcCCCCCcEEEEECchhHHHH-HHHHHHhcCC
Q 023223          243 GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEV-CYCFCLEFSA  284 (285)
Q Consensus       243 g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~-~~~~L~~~Gv  284 (285)
                      |++++.+.++.......++.+|+|||++|++. +++.|.++|+
T Consensus        97 g~~~~~~l~~~~~~~~~~~~vyiCGP~~m~~~~~~~~L~~~G~  139 (147)
T d1umka2          97 GFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGH  139 (147)
T ss_dssp             SSCCHHHHHHHSCCGGGCCEEEEESCHHHHHHTTHHHHHHHTC
T ss_pred             eehHHHHHHHhcCCCcCCcEEEEeCCHHHHHHHHHHHHHHcCC
Confidence            99998776643333346788999999999985 6889999986

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.5e-21  Score=153.03  Aligned_cols=116  Identities=16%  Similarity=0.242  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCC-----CC
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGN-----WS  239 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~-----~~  239 (285)
                      +.++++||||||||||++++++++++.+...++.|+|++|+.++++|.+++.+|..+  +++++.+++++.+.     +.
T Consensus         5 ~d~plv~IagGtGiaP~~s~l~~l~~~~~~~~i~l~~~~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
T d1gvha3           5 DDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQF   84 (143)
T ss_dssp             TTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCTTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCC
T ss_pred             CCCCEEEEEchhhHHHHHHHHHHHHHcCCCceEEEEeecCCHHHHHHHHHHHHHHHhCCceEEEEEEeccCcccccccce
Confidence            567899999999999999999999988888999999999999999999999999886  78888888876542     22


Q ss_pred             ccccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          240 GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       240 ~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      ...+++......  ...+.++..+|+|||++|++.+++.|.++|+
T Consensus        85 ~~~~~~~~~~l~--~~~~~~~~~~~iCGp~~m~~~v~~~L~~~G~  127 (143)
T d1gvha3          85 DSEGLMDLSKLE--GAFSDPTMQFYLCGPVGFMQFTAKQLVDLGV  127 (143)
T ss_dssp             SEESSCCGGGSS--SCCCCTTCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             eeeccccHHHHH--hcccccCcEEEEeCcHHHHHHHHHHHHHcCC
Confidence            334455543333  2445567899999999999999999999986

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.4e-21  Score=153.97  Aligned_cols=116  Identities=22%  Similarity=0.281  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCccccc
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGY  244 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~~g~  244 (285)
                      +.++++||||||||||++||+++++..+...++.|+|++|+.++++|.++++++..+  ++.+..++.+.+..+.+..++
T Consensus         5 ~~k~lvlIa~GtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (148)
T d1fdra2           5 HCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGR   84 (148)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCCTTEEESC
T ss_pred             CCCEEEEEEcCeEHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHhhhHHHhccccccccccccCcccccccccc
Confidence            568999999999999999999999888888999999999999999999999998874  666666666555556555555


Q ss_pred             cchHHH-----Hhh-hcCCCCCcEEEEECchhHHHHHHHHHHhc
Q 023223          245 VQAAFS-----RAK-KIFNPQGTGVVLCGQKQMAEVCYCFCLEF  282 (285)
Q Consensus       245 v~~~~~-----~~~-~~~~~~~~~vyiCGp~~m~~~~~~~L~~~  282 (285)
                      ..+...     +.. ...+.+++.||||||++|++.+.+.|.+.
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~L~e~  128 (148)
T d1fdra2          85 IPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKET  128 (148)
T ss_dssp             HHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHhhccccccccceEEEECCHHHHHHHHHHHHHh
Confidence            444332     211 12345677899999999999999999753

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.86  E-value=1.8e-21  Score=152.65  Aligned_cols=128  Identities=20%  Similarity=0.403  Sum_probs=97.9

Q ss_pred             CCCcccCCCCCCCCCCeEEEEEcCcchhHHHHHHHHhhccC--CCCcEEEEEccCCccccccHHHHHHHHHC--CC-EEE
Q 023223          154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK--ERSDVRLYYGARNLKRMAYQDKFKEWESS--GV-KIV  228 (285)
Q Consensus       154 G~~f~~~~~~~~~~~~~~vliAgGtGIaP~~sil~~~~~~~--~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~-~v~  228 (285)
                      |+ |.++..  +.+.++++||||||||||++++++++++.+  ...++.|+|++|+.++++|.+++..+...  +. .+.
T Consensus         1 G~-f~l~~~--~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~~~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   77 (146)
T d2cnda2           1 GS-FVINGK--QRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVW   77 (146)
T ss_dssp             SC-EEETTE--EECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEE
T ss_pred             Ce-EEeCCC--CCCCCEEEEEeceEEHhHHHHHHHHHHHhCCccCceEEEEEeecccccchhHHHHhhHHHhCCCceeEE
Confidence            44 556421  235689999999999999999999987543  45789999999999999999999998874  33 333


Q ss_pred             EEee---CCCCCCCccccccchHHHHhhhcCCCCCcEEEEECchhHHHH-HHHHHHhcCC
Q 023223          229 PVLS---QPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEV-CYCFCLEFSA  284 (285)
Q Consensus       229 ~~~s---~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~-~~~~L~~~Gv  284 (285)
                      .+..   .+.+.|.+..|+++....+.......++..+|+|||++|++. +++.|.++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~~m~~~av~~~L~~~G~  137 (146)
T d2cnda2          78 YVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPMIQFAISPNLEKMKY  137 (146)
T ss_dssp             EEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHHHHTTTHHHHHTTTC
T ss_pred             EeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECCHHHHHHHHHHHHHHcCC
Confidence            3332   234577888999998776643333445778999999999995 7899999996

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.85  E-value=4.1e-21  Score=150.27  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=92.3

Q ss_pred             CCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC--CCEEEEEeeCCCCCCCc---
Q 023223          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSG---  240 (285)
Q Consensus       166 ~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~---  240 (285)
                      +..+++|||||||||||+++|+++++.. ...+++|+|++|+.++++|++++.++...  +++++.+++++.+.+..   
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~-~~~~i~li~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQA-PPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRD   81 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCS-SCCCEEEEEEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTT
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHc-CCCcEEEEeeccChhhhhhHHHHHHHHHhCCCeEEEEEEcccCCccccccc
Confidence            3567899999999999999999997754 46789999999999999999999998874  88999999887553322   


Q ss_pred             --cccccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          241 --ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       241 --~~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                        ..++.......  ......+..+|+|||++|++++++.|.++|+
T Consensus        82 ~~~~~~~~~~~~~--~~~~~~~~~vyiCGp~~m~~~v~~~L~~~G~  125 (142)
T d1cqxa3          82 YDYPGLVDVKQIE--KSILLPDADYYICGPIPFMRMQHDALKNLGI  125 (142)
T ss_dssp             BSEESSCCGGGSH--HHHCCTTCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             ccchhhhHHHHHH--hhcccCCceEEEECChhHHHHHHHHHHHcCC
Confidence              22333333322  1234467799999999999999999999986

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.84  E-value=4.8e-21  Score=152.72  Aligned_cols=119  Identities=23%  Similarity=0.402  Sum_probs=96.1

Q ss_pred             CCCCCeEEEEEcCcchhHHHHHHHHhhccC-----CCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCC
Q 023223          165 PDEYPTVLIFATGSGISPIRSLIESGFSSK-----ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDG  236 (285)
Q Consensus       165 ~~~~~~~vliAgGtGIaP~~sil~~~~~~~-----~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~  236 (285)
                      .+..++++|||||||||||+|||++++...     ...++.|+||+|+.++++|.+++.++...   .+.+.++.+++..
T Consensus         5 ~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~s~~~~   84 (160)
T d1fnda2           5 KDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQT   84 (160)
T ss_dssp             SCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCB
T ss_pred             CCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCceeEEEEEccchh
Confidence            456789999999999999999999987432     35789999999999999999999998875   4567777787777


Q ss_pred             CCCccccccchHHHHhh----hcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          237 NWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       237 ~~~~~~g~v~~~~~~~~----~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      .|.+..++++.......    ......++.+|+|||++|++.+++.|.+.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~l~~~~  135 (160)
T d1fnda2          85 NEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLA  135 (160)
T ss_dssp             CTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence            77777777776654321    123456789999999999999999998765

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4e-20  Score=135.83  Aligned_cols=95  Identities=21%  Similarity=0.354  Sum_probs=82.6

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC--eeeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~--~~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      .|.+++|++++++++++++++++.+.      +.|+||||+.|+++..+  ..|+|||+|.|.    ++.++++||.++ 
T Consensus         2 ~w~~a~V~~v~~~t~~v~~l~~~~p~------~~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~----~~~~~~~vk~~~~   71 (99)
T d1fdra1           2 DWVTGKVTKVQNWTDALFSLTVHAPV------LPFTAGQFTKLGLEIDGERVQRAYSYVNSPD----NPDLEFYLVTVPD   71 (99)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEECCC------CCCCTTCEEEEEECC---CEEEEEECCSCTT----CSSEEEEEECCTT
T ss_pred             CcEEEEEEEEEEcCCCEEEEEEcCCC------CCCCCCcEEEeccCCCCCcEEEEEccCCCCC----CceeEEEEEEecC
Confidence            69999999999999999999998532      58999999999999654  468999999987    788999999987 


Q ss_pred             CcchHHhhCCCCCCEEEEEeecCCCccc
Q 023223          132 GSTAEVLCGLKKGDVVEISQVMGRGFAV  159 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~gP~G~~f~~  159 (285)
                      |.+|++|+++++||+|.++||.|..|.+
T Consensus        72 G~~S~~l~~lk~GD~v~v~gP~~g~F~L   99 (99)
T d1fdra1          72 GKLSPRLAALKPGDEVQVVSEAAGFFVL   99 (99)
T ss_dssp             CSSHHHHHTCCTTCEEEEESSCBCCCSG
T ss_pred             cHHHHHHhhCCCCCEEEECcCCCCEEEC
Confidence            6899999999999999999977765643

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.82  E-value=2.3e-20  Score=147.89  Aligned_cols=117  Identities=22%  Similarity=0.347  Sum_probs=88.0

Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEeeCCCCCC
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNW  238 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s~~~~~~  238 (285)
                      ...++||||||||||||+|||++++..     +...+++|+|++|+.++++|++++.++.++   .+.+..+.+++..+|
T Consensus         2 p~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~   81 (154)
T d1jb9a2           2 PNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNR   81 (154)
T ss_dssp             TTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTCC--
T ss_pred             CCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCEEEEEEeccCCcCc
Confidence            357999999999999999999998742     345789999999999999999999998875   345666667777777


Q ss_pred             CccccccchHHHHhhh---cCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          239 SGETGYVQAAFSRAKK---IFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       239 ~~~~g~v~~~~~~~~~---~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      ....++++........   .....++.+|+|||+.|++++.+.|.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~mm~~v~~~L~~~~  129 (154)
T d1jb9a2          82 SGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVA  129 (154)
T ss_dssp             --CCCCHHHHHHHTHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred             CCcccccchHHHHhHHHhhhcccCCCEEEEECCHHHHHHHHHHHHHHH
Confidence            7767776665443211   11235779999999999999998887653

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.81  E-value=4.5e-20  Score=147.02  Aligned_cols=120  Identities=21%  Similarity=0.353  Sum_probs=94.3

Q ss_pred             CCCCCeEEEEEcCcchhHHHHHHHHhhcc---------CCCCcEEEEEccCCccccccHHHHHHHHHC---CCEEEEEee
Q 023223          165 PDEYPTVLIFATGSGISPIRSLIESGFSS---------KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLS  232 (285)
Q Consensus       165 ~~~~~~~vliAgGtGIaP~~sil~~~~~~---------~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~~~v~~~~s  232 (285)
                      .+..++++|||||||||||+|+|++++..         ....+++|+|++|+.++++|.+++.++..+   .+.+....+
T Consensus         3 ~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~~~~~~~~   82 (162)
T d2bmwa2           3 DDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAIS   82 (162)
T ss_dssp             SCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEET
T ss_pred             cCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCceEEEEEee
Confidence            34578999999999999999999998642         235689999999999999999999988774   456666677


Q ss_pred             CCCCCCCccccccchHHHHhh----hcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          233 QPDGNWSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       233 ~~~~~~~~~~g~v~~~~~~~~----~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +....|.+..++.+....+..    ......+..+|+|||++|++++.+.|.+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~  138 (162)
T d2bmwa2          83 REQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAA  138 (162)
T ss_dssp             TTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECCHHHHHHHHHHHHHhhc
Confidence            777777776666655443311    2234577899999999999999999988764

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.81  E-value=1.5e-19  Score=132.97  Aligned_cols=94  Identities=23%  Similarity=0.376  Sum_probs=84.3

Q ss_pred             eeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 023223           58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE  136 (285)
Q Consensus        58 ~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s~  136 (285)
                      +++|++++.+++++++++|+.+++..  .+.|+|||||.|++++.+..|+||+++.|.    ++.+++.||.++ |.+|+
T Consensus         5 ~~~v~~v~~lt~~v~~~~l~~~~~~~--~~~f~pGQ~v~l~i~g~~~~r~ys~~~~~~----~~~~~~~i~~~~~G~~s~   78 (100)
T d1krha1           5 EGTLARVENLSDSTITFDIQLDDGQP--DIHFLAGQYVNVTLPGTTETRSYSFSSQPG----NRLTGFVVRNVPQGKMSE   78 (100)
T ss_dssp             EEEEEEEEESSSSEEEEEEEECTTCC--CCCCCTTCEEEEECTTSSCEEEEECCSCTT----CSEEEEEEECCTTCHHHH
T ss_pred             EEEEEEEEEcCCCeEEEEEEcCCCCc--CCCCCCCEEEEEEECCcceeEEeeccCCCc----cCceEEEEEEeeCCchhh
Confidence            68999999999999999999987532  368999999999999888889999999987    788999999987 68999


Q ss_pred             HhhC-CCCCCEEEEEeecCCCc
Q 023223          137 VLCG-LKKGDVVEISQVMGRGF  157 (285)
Q Consensus       137 ~L~~-l~~Gd~v~i~gP~G~~f  157 (285)
                      ||++ +++||+|.++||+|++|
T Consensus        79 ~l~~~l~~Gd~v~v~gP~G~Ff  100 (100)
T d1krha1          79 YLSVQAKAGDKMSFTGPFGSFY  100 (100)
T ss_dssp             HHHTTCCTTCEEEEEEEECSCS
T ss_pred             hhhccCCCCCEEEEeccccccC
Confidence            9975 99999999999999954

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.8e-19  Score=133.21  Aligned_cols=98  Identities=19%  Similarity=0.289  Sum_probs=85.2

Q ss_pred             CCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCC----eeeeeeecCCCCCCCCCCeEEEEEEE
Q 023223           54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS  129 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~----~~~~~si~s~p~~~~~~~~l~l~Vk~  129 (285)
                      +.|++++|++++.+++++++|+|+.++...+  +.|+||||+.|+++..+    ..++||+++.+.    ++.++|+||+
T Consensus         4 ~g~~~~~v~~~~~~t~~~~~~~l~~~d~~~~--~~~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~----~~~~~i~vk~   77 (107)
T d1gvha2           4 EGTRDFRIVAKTPRSALITSFELEPVDGGAV--AEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKR   77 (107)
T ss_dssp             SSEEEEEEEEEEECSSSEEEEEEEETTCCCC--CCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC----SSCEEEEEEC
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEEcCCcCcc--cCCCCCCEEEEEeeccccCceEEeeccccCCCC----CCceEEEEEE
Confidence            3799999999999999999999997665432  67999999999998543    458899999887    7899999999


Q ss_pred             eC-CcchHHhh-CCCCCCEEEEEeecCCCc
Q 023223          130 VA-GSTAEVLC-GLKKGDVVEISQVMGRGF  157 (285)
Q Consensus       130 ~~-G~~s~~L~-~l~~Gd~v~i~gP~G~~f  157 (285)
                      ++ |.+|++|+ ++++||+|.++||+|++|
T Consensus        78 ~~~G~~S~~l~~~l~~Gd~v~v~gP~G~Ff  107 (107)
T d1gvha2          78 EEGGQVSNWLHNHANVGDVVKLVAPAGDFF  107 (107)
T ss_dssp             CTTCHHHHHHHHTCCTTCEEEEEEEECSCC
T ss_pred             cCCcchhHHHHhcCCCCCEEEEeCccccCC
Confidence            87 58999997 799999999999999954

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.80  E-value=2.5e-20  Score=148.09  Aligned_cols=115  Identities=22%  Similarity=0.321  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC----------CCEEEEEeeCCCCC
Q 023223          168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS----------GVKIVPVLSQPDGN  237 (285)
Q Consensus       168 ~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~----------~~~v~~~~s~~~~~  237 (285)
                      .+++||||||||||||+||+++++..+...+++++|++|+.++++|.+++..+...          .+++....+.....
T Consensus         7 ~~~lvlIagGtGIaP~~sil~~~~~~~~~~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (158)
T d1a8pa2           7 GKHLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTRESFH   86 (158)
T ss_dssp             CSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCCS
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHhCCCCceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEeccccccc
Confidence            57999999999999999999998877777899999999999999999999877653          34555555655555


Q ss_pred             CCccc------cccchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          238 WSGET------GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       238 ~~~~~------g~v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +.+..      +++++.+..  ....+.++.+|+|||++|++.+.+.|.++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yiCGp~~m~~~v~~~L~~~G~  137 (158)
T d1a8pa2          87 NQGRLTDLMRSGKLFEDIGL--PPINPQDDRAMICGSPSMLDESCEVLDGFGL  137 (158)
T ss_dssp             SBSCHHHHHHSSHHHHHHTC--CCCCTTTEEEEEEECHHHHHHHHHHHHHTTC
T ss_pred             ccccccchhccchhhhhhhc--cccCcccceEEEECCHHHHHHHHHHHHHcCC
Confidence            54422      233332222  2344578899999999999999999999986

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.79  E-value=1.3e-19  Score=137.64  Aligned_cols=105  Identities=20%  Similarity=0.219  Sum_probs=78.6

Q ss_pred             CCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHC-CCEEEEEeeCCCCCCCccccc
Q 023223          166 DEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS-GVKIVPVLSQPDGNWSGETGY  244 (285)
Q Consensus       166 ~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~v~~~~s~~~~~~~~~~g~  244 (285)
                      +..+++||||||||||||++|++++.... ..+++++|++|+.++++|+++++.|... ++.+....++...     ...
T Consensus         6 ~~~~~~v~IagGtGiaP~~s~~~~l~~~~-~~~~~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~   79 (120)
T d2piaa2           6 KRAKSFILVAGGIGITPMLSMARQLRAEG-LRSFRLYYLTRDPEGTAFFDELTSDEWRSDVKIHHDHGDPTK-----AFD   79 (120)
T ss_dssp             TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-SSEEEEEEEESCGGGCTTHHHHHSTTTTTTEEEEECTTCTTS-----CCC
T ss_pred             CCCCCEEEEEecccHHHHHHHHHHHHHhc-CCCeEEEEeeCCHHHhhhhHHHHHHhhCCCeEEeeecCCCcc-----ccc
Confidence            36789999999999999999999987543 4689999999999999999999998764 4444333222211     112


Q ss_pred             cchHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHh
Q 023223          245 VQAAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLE  281 (285)
Q Consensus       245 v~~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~  281 (285)
                      +...     .....++..+|+|||++|++.+++.|..
T Consensus        80 ~~~~-----~~~~~~~~~~y~CGp~~mi~~v~~~~~~  111 (120)
T d2piaa2          80 FWSV-----FEKSKPAQHVYCCGPQALMDTVRDMTGH  111 (120)
T ss_dssp             HHHH-----HSSCCTTEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHH-----hccCCCcCEEEEeCCHHHHHHHHHHHcC
Confidence            2111     1224467899999999999999998754

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.79  E-value=4.7e-19  Score=132.84  Aligned_cols=97  Identities=18%  Similarity=0.332  Sum_probs=83.7

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCC----CeeeeeeecCCCCCCCCCCeEEEEEEEe
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----GKPTFLAIASPPSFASASGAFEFLVKSV  130 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~----~~~~~~si~s~p~~~~~~~~l~l~Vk~~  130 (285)
                      .|++++|++++++++++++|+|+.++...+  +.|.||||+.|+++..    ...|+|||+|.|.    ++.++|+||+.
T Consensus         3 g~r~~~V~~~~~~t~dv~~~~l~~~~~~~~--~~~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~----~~~~~~~v~~~   76 (111)
T d1cqxa2           3 GWRTFVIREKRPESDVITSFILEPADGGPV--VNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKRE   76 (111)
T ss_dssp             SCEEEEEEEEEECSSSEEEEEEEETTCCCC--CCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC----SSCEEEEEECC
T ss_pred             CceEEEEEEEEEeCCCcEEEEEEeCCcCcc--cCCCCCCEEEEEeecCCCcceeeeeccccCCcc----CCCeEEEEEEe
Confidence            699999999999999999999998765432  6899999999998732    2478999999987    77899999975


Q ss_pred             C------CcchHHhh-CCCCCCEEEEEeecCCCcc
Q 023223          131 A------GSTAEVLC-GLKKGDVVEISQVMGRGFA  158 (285)
Q Consensus       131 ~------G~~s~~L~-~l~~Gd~v~i~gP~G~~f~  158 (285)
                      .      |.+|+||+ ++++||+|.++||+|+ |.
T Consensus        77 ~~~~~~~G~~S~~l~~~l~~Gd~v~v~gP~G~-F~  110 (111)
T d1cqxa2          77 GGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS-FH  110 (111)
T ss_dssp             CBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS-CS
T ss_pred             cCCCcccchhHHHHHhcCCCCCEEEEEccCeE-eE
Confidence            3      67899998 5999999999999998 64

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.2e-19  Score=141.68  Aligned_cols=113  Identities=21%  Similarity=0.409  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEEcCcchhHHHHHHHHhh----ccCCCCcEEEEEccCCcc-ccccHHHHHHHHHC--CCEEEEEeeCCCCC
Q 023223          165 PDEYPTVLIFATGSGISPIRSLIESGF----SSKERSDVRLYYGARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDGN  237 (285)
Q Consensus       165 ~~~~~~~vliAgGtGIaP~~sil~~~~----~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~--~~~v~~~~s~~~~~  237 (285)
                      .+...++||||+|||||||+|+|++..    .....++++||||+|+.+ +++|+++++.+...  .+++..++|+++..
T Consensus         4 ~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Sr~~~~   83 (160)
T d1ja1a3           4 FKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAH   83 (160)
T ss_dssp             SSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSSSEEEEEETTSSSS
T ss_pred             cCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHcCCCceeEEEeeccccC
Confidence            456789999999999999999998753    223457899999999876 78999999999886  56788888886543


Q ss_pred             CCccccccchHHHHhh----hcCCCCCcEEEEECch-hHHHHHHHHHHh
Q 023223          238 WSGETGYVQAAFSRAK----KIFNPQGTGVVLCGQK-QMAEVCYCFCLE  281 (285)
Q Consensus       238 ~~~~~g~v~~~~~~~~----~~~~~~~~~vyiCGp~-~m~~~~~~~L~~  281 (285)
                          ..++++.+.+..    ......+..+|+|||+ .|.+.+++.|.+
T Consensus        84 ----~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~  128 (160)
T d1ja1a3          84 ----KVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYD  128 (160)
T ss_dssp             ----CCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHH
T ss_pred             ----ccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHH
Confidence                456666554421    1223457899999975 788999887764

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=1.3e-18  Score=127.55  Aligned_cols=92  Identities=22%  Similarity=0.291  Sum_probs=81.4

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe--eeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~--~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      .+...+|++++++++++++|+++.+++     +.|+||||+.|.++..++  .|+|||+|+|.    ++.++++||.++ 
T Consensus         2 ~~~~~kV~~v~~~t~~~~~~~l~~~~~-----~~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~----~~~~~~~i~~~~~   72 (99)
T d1a8pa1           2 NLNVERVLSVHHWNDTLFSFKTTRNPS-----LRFENGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVQN   72 (99)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCSS
T ss_pred             CcceEEEEEEEecCCCEEEEEecCCCC-----CccCCCcEEEEeccCCCceeEeeccccCCCC----CCcEEEEEEEeCC
Confidence            356678999999999999999997654     689999999999986654  58999999997    789999999876 


Q ss_pred             CcchHHhhCCCCCCEEEEE-eecCC
Q 023223          132 GSTAEVLCGLKKGDVVEIS-QVMGR  155 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~-gP~G~  155 (285)
                      |.+|++|+++++||+|.++ ||+|.
T Consensus        73 G~~S~~L~~l~~Gd~v~v~~gP~G~   97 (99)
T d1a8pa1          73 GPLTSRLQHLKEGDELMVSRKPTGT   97 (99)
T ss_dssp             CSSHHHHTTCCTTCEEEEESCCBCS
T ss_pred             CChhHHHHhCCCCCEEEECCCCcee
Confidence            6899999999999999996 99996

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.4e-19  Score=140.90  Aligned_cols=118  Identities=15%  Similarity=0.264  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHHC--CCEEEEEeeCCCCCCCcc
Q 023223          165 PDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGE  241 (285)
Q Consensus       165 ~~~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~~~v~~~~s~~~~~~~~~  241 (285)
                      .+..+++||||||||||||+|||++..+.....++.++|+++.. ++++|.+++..+.+.  +++++++++++...+...
T Consensus         3 ~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~   82 (153)
T d1ddga2           3 ANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYV   82 (153)
T ss_dssp             SSTTSCEEEECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTSSSSCCCH
T ss_pred             cCCCCCEEEEECchhHHHHHHHHHHHHHhcCCCceEEeecccCcHHHHHhHHHHHHHHHcCCCceEEEEEEecccCcccc
Confidence            45678899999999999999999998877777777777777654 567999999999886  578888888876554333


Q ss_pred             ccccchHHHHhhhcCCCCCcEEEEECchhH-HHHHHHHHHhcC
Q 023223          242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQM-AEVCYCFCLEFS  283 (285)
Q Consensus       242 ~g~v~~~~~~~~~~~~~~~~~vyiCGp~~m-~~~~~~~L~~~G  283 (285)
                      .+......... ......+..+|+|||+.| ++.+++.|.+.|
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~  124 (153)
T d1ddga2          83 QDKLREQGAEL-WRWINDGAHIYVCGDANRMAKDVEQALLEVI  124 (153)
T ss_dssp             HHHHHHTHHHH-HHHHHTTCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHH-HhhhccCCEEEEECCCcchHHHHHHHHHHHH
Confidence            33222211111 111234678999997765 588988887764

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7.6e-19  Score=128.45  Aligned_cols=92  Identities=18%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             eeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 023223           57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA  135 (285)
Q Consensus        57 ~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G~~s  135 (285)
                      .+++|.+++.+++++++++|+.+++     +.|+||||+.|.+++.. .|+|||+|.|.+   ++.++|+||..+ |.+|
T Consensus         3 l~~~V~~i~~lt~~v~~~~l~~~~~-----~~f~~GQ~v~l~~~~~~-~r~ySias~p~~---~~~l~l~ir~~~~g~~s   73 (97)
T d1qfja1           3 LSCKVTSVEAITDTVYRVRIVPDAA-----FSFRAGQYLMVVMDERD-KRPFSMASTPDE---KGFIELHIGASEINLYA   73 (97)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEESSC-----CCCCTTCEEEEESSSSC-EEEEECCSCTTS---TTCEEEEEC------CC
T ss_pred             EEEEEEEEEEcCCCEEEEEEeCCcc-----CccCCCCEEEEEEcCCC-cEEEEEEEcCCC---CcEEEEEEeEccCCchh
Confidence            4799999999999999999997653     68999999999998654 578999999975   889999999876 5788


Q ss_pred             HHhh-CCCCCCEEEEEeecCCCc
Q 023223          136 EVLC-GLKKGDVVEISQVMGRGF  157 (285)
Q Consensus       136 ~~L~-~l~~Gd~v~i~gP~G~~f  157 (285)
                      ++|. ++++||.|.|+||+|++|
T Consensus        74 ~~l~~~l~~G~~v~v~gP~G~~~   96 (97)
T d1qfja1          74 KAVMDRILKDHQIVVDIPHGEAW   96 (97)
T ss_dssp             HHHHHHHHHHSEEEEEEEECSCC
T ss_pred             HhHhhcCCCCCEEEEeccCCceE
Confidence            8886 599999999999999966

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.76  E-value=1.9e-18  Score=127.26  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=83.1

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe--eeeeeecCCCCCCCCCCeEEEEEEEeC-
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVKSVA-  131 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~--~~~~si~s~p~~~~~~~~l~l~Vk~~~-  131 (285)
                      ....++|++++.+++++++++|+.++.    ...++|||||+|++++.++  .|+|||++.+.+   ++.++|.+|..+ 
T Consensus         3 ~~~~~~V~~~~~~~~~i~~l~l~~~~~----~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~---~~~i~~~i~~~~~   75 (101)
T d1ep3b1           3 LQEMMTVVSQREVAYNIFEMVLKGTLV----DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDE   75 (101)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEESGGG----GGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCT
T ss_pred             cCeeEEEEEEEEecCCEEEEEEECCCh----hhccCCCceEEEEccCCccEeeccceeeeCCCC---CcEEEEEEeecCc
Confidence            356799999999999999999996542    2468999999999997643  578999998875   899999999886 


Q ss_pred             CcchHHhhCCCCCCEEEEEeecCCCc
Q 023223          132 GSTAEVLCGLKKGDVVEISQVMGRGF  157 (285)
Q Consensus       132 G~~s~~L~~l~~Gd~v~i~gP~G~~f  157 (285)
                      |.+|.+|+++++||+|.+.||+|++|
T Consensus        76 g~~t~~l~~l~~Gd~v~v~GP~G~~F  101 (101)
T d1ep3b1          76 TTGTYKLSKLESGAKVDVMGPLGNGF  101 (101)
T ss_dssp             TSHHHHHHTCCTTCEEEEEEEESBCC
T ss_pred             chhhHHHHhCCCCCEEEEecccCCCC
Confidence            46899999999999999999999976

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.75  E-value=4.2e-18  Score=128.16  Aligned_cols=98  Identities=15%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             eeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe--eeeeeecCCCCCCCCCCeEEEEEEEeC--
Q 023223           56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLVKSVA--  131 (285)
Q Consensus        56 ~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~--~~~~si~s~p~~~~~~~~l~l~Vk~~~--  131 (285)
                      +.+++|++++.+++|+++++|+.+++..+  +.+.||||+.|+++..++  .|+||++|.|.+   .+.++|+||.++  
T Consensus         2 k~~~klv~~~~it~d~~~~~f~~p~~~~~--~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~---~~~~~~~ik~~~~~   76 (114)
T d2cnda1           2 RIHCRLVAKKELSRDVRLFRFSLPSPDQV--LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE---IGHFDLLVKVYFKN   76 (114)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECSSTTCC--CCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEEECCCSS
T ss_pred             cEEEEEEEEEEcCCCeEEEEEECCCcccc--cCccceEEEEEEeecccceEEeeeccCCCCCC---CCEEEEEEEeccCC
Confidence            46899999999999999999999876533  679999999999986654  789999999985   789999999753  


Q ss_pred             --------CcchHHhhCCCCCCEEEEEeecCCCccc
Q 023223          132 --------GSTAEVLCGLKKGDVVEISQVMGRGFAV  159 (285)
Q Consensus       132 --------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~  159 (285)
                              |.+|.+|+++++||+|+++||+|+ |.+
T Consensus        77 ~~~~~~~gG~~s~~l~~l~~Gd~v~i~gP~G~-F~y  111 (114)
T d2cnda1          77 EHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGH-VEY  111 (114)
T ss_dssp             CBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS-EEC
T ss_pred             CccccccCchhHHHHhhCCCCCEEEEECCcee-eEE
Confidence                    578999999999999999999999 765

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.75  E-value=6.5e-18  Score=124.67  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=82.2

Q ss_pred             CCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeCC
Q 023223           53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG  132 (285)
Q Consensus        53 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~G  132 (285)
                      +..|.+++|++++.+++|+++|+|+.++...+  +.|+|||||.|.+++.. .|.|||+|.|..   ++.++|+||+.++
T Consensus         5 ~~~~~~~~V~~~~~~t~di~~~~l~~~~g~~l--p~f~pGQ~v~v~~~~~~-~R~YSl~s~p~~---~~~~~i~Vk~~~~   78 (103)
T d2piaa1           5 EDGFLRLKIASKEKIARDIWSFELTDPQGAPL--PPFEAGANLTVAVPNGS-RRTYSLCNDSQE---RNRYVIAVKRDSN   78 (103)
T ss_dssp             TTTCEEEEEEEEEEEETTEEEEEEECTTCCCC--CCCCTTCEEEEECTTSC-EEEEECCSCTTC---CSEEEEEEECCTT
T ss_pred             CCCeEEEEEEEEEEcCCCeEEEEEECCCCCcC--CCCCCCceEEEEEecce-eEEEEEecCCCC---CCEEEEEEEEECC
Confidence            35788999999999999999999998866433  47999999999998754 588999999975   7899999999874


Q ss_pred             -c-chHHhh-CCCCCCEEEEEeec
Q 023223          133 -S-TAEVLC-GLKKGDVVEISQVM  153 (285)
Q Consensus       133 -~-~s~~L~-~l~~Gd~v~i~gP~  153 (285)
                       . .|.||+ ++++||+|.++||.
T Consensus        79 g~~~S~~l~~~l~~Gd~v~v~~Pr  102 (103)
T d2piaa1          79 GRGGSISFIDDTSEGDAVEVSLPR  102 (103)
T ss_dssp             SCSHHHHHHHSCCTTCEEEECCCB
T ss_pred             CccchHHHHhcCCCCCEEEEeCCc
Confidence             3 589997 79999999999985

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.75  E-value=1.4e-18  Score=129.72  Aligned_cols=97  Identities=14%  Similarity=0.226  Sum_probs=84.6

Q ss_pred             CeeeeEEEEEeecCCCeEEEEEECCCCCcc-cccCCCCCcEEEEEEcCCCeeeeeeecCCCCCCCCCCeEEEEEEEeC-C
Q 023223           55 VWTPTPLAEISPAAESLFHVSIDISDAPDI-ASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G  132 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l-~~~~~~pGQ~v~l~~~~~~~~~~~si~s~p~~~~~~~~l~l~Vk~~~-G  132 (285)
                      ...+++|++++.+++|+++++|+.+++... ..+.|+||||+.|++++....|+|||+|.|.+   ++.++|+||..+ |
T Consensus         9 ~~~~a~V~~~~~lt~di~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~g~~~~R~ySias~p~~---~~~~~~~i~~~~~G   85 (109)
T d1tvca1           9 GSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP---EGRLEFLIRVLPEG   85 (109)
T ss_dssp             SEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSCSSSEEECCBCCSSS---SCCEEEEECCCTTS
T ss_pred             eeEEEEEEEEEEeCCCeEEEEEECCCcccccccccCCCCcEEEEEECCccccccceeccCCcC---CceeEEEEEEeCCc
Confidence            445899999999999999999998764221 23689999999999998778899999999975   789999999986 5


Q ss_pred             cchHHhh-CCCCCCEEEEEeecC
Q 023223          133 STAEVLC-GLKKGDVVEISQVMG  154 (285)
Q Consensus       133 ~~s~~L~-~l~~Gd~v~i~gP~G  154 (285)
                      .+|+||+ ++++||+|.+.||+|
T Consensus        86 ~~S~~l~~~l~~Gd~v~i~gP~G  108 (109)
T d1tvca1          86 RFSDYLRNDARVGQVLSVKGPLG  108 (109)
T ss_dssp             SSHHHHHHHSSSSSEEEEEEEEC
T ss_pred             hHHHHHHhhCCCCCEEEEeCCcc
Confidence            8999997 599999999999998

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.8e-18  Score=137.38  Aligned_cols=115  Identities=18%  Similarity=0.282  Sum_probs=81.9

Q ss_pred             CCCCeEEEEEcCcchhHHHHHHHHhhc-----cCCCCcEEEEEccCCcc-ccccHHHHHHHHHC--CCEEEEEeeCCCCC
Q 023223          166 DEYPTVLIFATGSGISPIRSLIESGFS-----SKERSDVRLYYGARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDGN  237 (285)
Q Consensus       166 ~~~~~~vliAgGtGIaP~~sil~~~~~-----~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~--~~~v~~~~s~~~~~  237 (285)
                      +..+++||||||||||||+|||++.+.     .....++.++|++++.. +++|++++..+...  +++++++++++.+.
T Consensus         7 ~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sr~~~~   86 (165)
T d1f20a2           7 NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDR   86 (165)
T ss_dssp             CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTS
T ss_pred             CCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCceEEEEEEeccccC
Confidence            456789999999999999999987642     12345566666666554 67899999999886  56777888876654


Q ss_pred             CCccccccchHHHHh-----hhcCCCCCcEEEEECchhHHHHHHHHHHhcC
Q 023223          238 WSGETGYVQAAFSRA-----KKIFNPQGTGVVLCGQKQMAEVCYCFCLEFS  283 (285)
Q Consensus       238 ~~~~~g~v~~~~~~~-----~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~G  283 (285)
                      +.   ++++....+.     ......+++.+|+|||++|++++.+.|.+.+
T Consensus        87 ~~---~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp~~M~~~v~~~L~~i~  134 (165)
T d1f20a2          87 PK---KYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIM  134 (165)
T ss_dssp             CC---CCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred             CC---CcccchHHHHHHHHHHhhccCCCcEEEEECCcchHHHHHHHHHHHH
Confidence            43   2333322211     1122346789999999999999999998653

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-17  Score=126.63  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=88.6

Q ss_pred             ccCCCCeeeeEEEEEeecCCCeEEEEEECCCCCcccccCCCCCcEEEEEEcCCCe--eeeeeecCCCCCCCCCCeEEEEE
Q 023223           50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK--PTFLAIASPPSFASASGAFEFLV  127 (285)
Q Consensus        50 ~~~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~~~--~~~~si~s~p~~~~~~~~l~l~V  127 (285)
                      ..++..|.+++|++++.+++|+++|+|+.+++..  ...+.||||+.++++..++  .|.||++|.+..   .+.++|+|
T Consensus         6 ~~~P~~~~~~~v~~~~~it~d~~~f~f~~p~~~~--~~~~~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~~---~g~~~~~v   80 (124)
T d1umka1           6 LESPDIKYPLRLIDREIISHDTRRFRFALPSPQH--ILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD---KGFVDLVI   80 (124)
T ss_dssp             CCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTC--BCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC---CSEEEEEE
T ss_pred             ccCCCcCEEEEEEEEEEeCCCeEEEEEEcCCccc--ccccceeeEEEEEecccceeEEEeeccCCcccC---CceEEEEE
Confidence            3467788999999999999999999999987643  3689999999999886554  588999999875   79999999


Q ss_pred             EEe---------CC-cchHHhhCCCCCCEEEEEeecCCCccc
Q 023223          128 KSV---------AG-STAEVLCGLKKGDVVEISQVMGRGFAV  159 (285)
Q Consensus       128 k~~---------~G-~~s~~L~~l~~Gd~v~i~gP~G~~f~~  159 (285)
                      |..         +| .+|.+|++|++||+|+|+||+|+ |.+
T Consensus        81 k~~~~~~~~~~~~Gg~~s~~l~~l~~GD~v~v~gP~G~-F~y  121 (124)
T d1umka1          81 KVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGL-LVY  121 (124)
T ss_dssp             ECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS-EEE
T ss_pred             EecccccccccCCCcchHHHHhcCCCCCEEEEECCeee-eEE
Confidence            953         34 67788999999999999999999 654

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.71  E-value=8.2e-18  Score=134.07  Aligned_cols=107  Identities=14%  Similarity=0.215  Sum_probs=84.8

Q ss_pred             CCCeEEEEEcCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHHCCCEEEEEeeCCCCCCCccccccc
Q 023223          167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQ  246 (285)
Q Consensus       167 ~~~~~vliAgGtGIaP~~sil~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~v~~~~s~~~~~~~~~~g~v~  246 (285)
                      ..++++|||||+|||||++|++++.+.  ..+++++|++|+.++++|.++|+++...  .+....   ++.+.+..|++.
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~--~~~v~l~~g~r~~~~~~~~~el~~~~~~--~~~~~~---~~~~~~~~g~v~   79 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKT--GCQMTILLGFASENVKILENEFSNLKNV--TLKIAT---DDGSYGTKGHVG   79 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHH--TCEEEEEEEESSGGGCCCHHHHHTSTTE--EEEEEE---TTCSSSEESCHH
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhc--cCceEEEEecCCHHHHHHHHHHHHhhCC--Cccccc---cCccccccccHH
Confidence            567899999999999999999998643  4689999999999999999999888653  333322   334556677777


Q ss_pred             hHHHHhhhcCCCCCcEEEEECchhHHHHHHHHHHhcCC
Q 023223          247 AAFSRAKKIFNPQGTGVVLCGQKQMAEVCYCFCLEFSA  284 (285)
Q Consensus       247 ~~~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv  284 (285)
                      +...+    .......+|+|||+.|++++.+.+.++|.
T Consensus        80 ~~~~~----~~~~~~~vy~CGP~~m~~~v~~~~~~~g~  113 (160)
T d1ep3b2          80 MLMNE----IDFEVDALYTCGAPAMLKAVAKKYDQLER  113 (160)
T ss_dssp             HHHHH----CCSCCSEEEEESCHHHHHHHHHHTTTCSS
T ss_pred             HHHHh----hccccceeeeeccchHHHHHHHHHHhcCC
Confidence            66544    23456789999999999999999998873

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.66  E-value=4.3e-16  Score=120.27  Aligned_cols=97  Identities=19%  Similarity=0.181  Sum_probs=80.0

Q ss_pred             CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCC-CCC
Q 023223           54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFAS-ASG  121 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~-~~~  121 (285)
                      +....++|++++.++.     ++++|.++.+++     +.|.||||+.|.+++.      ..+|.|||+|+|.... +.+
T Consensus        17 ~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~~-----~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~   91 (136)
T d1fnda1          17 KTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-----IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAK   91 (136)
T ss_dssp             TBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSC
T ss_pred             CCCeEEEEEeEEEccCCCCCceEEEEecccCCC-----CcccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCc
Confidence            3445788999988874     699999997553     7899999999999742      3468999999997532 357


Q ss_pred             eEEEEEEEe----------CCcchHHhhCCCCCCEEEEEeecCC
Q 023223          122 AFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGR  155 (285)
Q Consensus       122 ~l~l~Vk~~----------~G~~s~~L~~l~~Gd~v~i~gP~G~  155 (285)
                      .++++||++          .|.+|+||++|++||+|.++||+|+
T Consensus        92 ~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~V~v~GP~Gk  135 (136)
T d1fnda1          92 SVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK  135 (136)
T ss_dssp             EEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECS
T ss_pred             EEEEEEEEeecccCCCcCCCceEehhhccCCCcCEEEEeCCCCC
Confidence            899999975          3789999999999999999999996

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.65  E-value=7.8e-16  Score=118.62  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             CCeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC------CeeeeeeecCCCCCCC-CCC
Q 023223           54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFAS-ASG  121 (285)
Q Consensus        54 ~~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~------~~~~~~si~s~p~~~~-~~~  121 (285)
                      +....++|++++.+++     +++++.++.++.    .+.|.||||+.|..+..      ...|.|||+|+|.... +.+
T Consensus        10 ~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~----~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~   85 (133)
T d2bmwa1          10 NAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGG----NLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK   85 (133)
T ss_dssp             TBCEEEEEEEEEECSCTTCSSCEEEEEEECTTS----CCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred             CCCeEEEEEEEEEccCCCCCceEEEEEEccCCc----cCCccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCcc
Confidence            3434789999999864     599999998654    26899999999999853      2358999999986432 356


Q ss_pred             eEEEEEEEe-----------CCcchHHhhCCCCCCEEEEEeecCCCc
Q 023223          122 AFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGF  157 (285)
Q Consensus       122 ~l~l~Vk~~-----------~G~~s~~L~~l~~Gd~v~i~gP~G~~f  157 (285)
                      .++++||+.           .|.+|+||+++++||+|.++||+|++|
T Consensus        86 ~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD~v~v~GP~G~~f  132 (133)
T d2bmwa1          86 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEM  132 (133)
T ss_dssp             EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSS
T ss_pred             EEEEEEEeccccccccCCCCCcEehhhHhhCCCCCEEEEeCCcccee
Confidence            899999975           278999999999999999999999955

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.47  E-value=3.5e-13  Score=105.92  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=83.6

Q ss_pred             CeeeeEEEEEeecCC-----CeEEEEEECCCCCcccccCCCCCcEEEEEEcCC--------CeeeeeeecCCCCCCC-CC
Q 023223           55 VWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--------GKPTFLAIASPPSFAS-AS  120 (285)
Q Consensus        55 ~~~~~~V~~~~~~~~-----~~~~l~l~~~~~~~l~~~~~~pGQ~v~l~~~~~--------~~~~~~si~s~p~~~~-~~  120 (285)
                      ....++|++++.++.     +++++.+++++.     +.|.||||+.|..+..        ..+|.|||+|+|.... +.
T Consensus        27 nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~~-----~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~~~~~~  101 (157)
T d1jb9a1          27 EPFTATIVSVESLVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDG  101 (157)
T ss_dssp             BCEEEEEEEEEECSCTTSSSCEEEEEEECTTS-----SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSS
T ss_pred             CCeEEEEEeEEEcccCCCCceEEEEEecCCCC-----ccEecCceEEEEcCCccccccCccCCcCEEEecCCCcCCCCCC
Confidence            334789999999875     799999998653     7899999999998843        3579999999997533 24


Q ss_pred             CeEEEEEEEe--------------CCcchHHhhCCCCCCEEEEEeecCCCcccC
Q 023223          121 GAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVD  160 (285)
Q Consensus       121 ~~l~l~Vk~~--------------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~  160 (285)
                      +.+.++||..              .|-+|.||+++++||+|.|.||.|++|.+.
T Consensus       102 ~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd~V~i~gp~g~~F~lP  155 (157)
T d1jb9a1         102 RTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLP  155 (157)
T ss_dssp             SEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTCEEEEEEEECSTTCCC
T ss_pred             CEEEEEEEEeeccccccccCCcccCceeehhhccCCCcCEEEEEecCCCcccCC
Confidence            6799999974              277999999999999999999999988764

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00031  Score=57.00  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=37.2

Q ss_pred             eeeeeeecCCCCCCCCCCeEEEEEEEeC---------CcchHHhh-CCCCCCEEEEEe
Q 023223          104 KPTFLAIASPPSFASASGAFEFLVKSVA---------GSTAEVLC-GLKKGDVVEISQ  151 (285)
Q Consensus       104 ~~~~~si~s~p~~~~~~~~l~l~Vk~~~---------G~~s~~L~-~l~~Gd~v~i~g  151 (285)
                      ++|+|||+|+|...  ++.++|+|..+.         |-+|+||+ .+++|++|.+.-
T Consensus       159 ~PR~YSIsSSp~~~--p~~i~ltv~vv~~~~~~~~r~GvcS~~L~~~l~~g~~V~v~i  214 (221)
T d1ddga1         159 TPRLYSIASSQAEV--ENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFI  214 (221)
T ss_dssp             CCEEEEBCCCTTTS--CSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEE
T ss_pred             CceeeeeccccccC--CCeeeEEEEEEEeeCCCCccceecHHHHHhhCCCCCEEEEEE
Confidence            46899999999532  678999997642         78999998 599999998853

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00067  Score=56.63  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEe------------CCcchHHhhCCCCCCEEEEE
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEIS  150 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~------------~G~~s~~L~~l~~Gd~v~i~  150 (285)
                      .++|+|||+|+|...  ++.++|+|..+            .|-+|.||+++++||+|.+.
T Consensus       208 L~PR~YSIsSSp~~~--p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~Gd~v~v~  265 (270)
T d1f20a1         208 LQPRYYSISSSPDMY--PDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCF  265 (270)
T ss_dssp             CCCEEEECCSCTTTS--TTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEE
T ss_pred             cccceeEEecCccCC--CCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCCCCEEEEE
Confidence            467999999999642  68899999743            27789999999999998774

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.98  E-value=0.016  Score=48.06  Aligned_cols=41  Identities=17%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             CeeeeeeecCCCCCCCCCCeEEEEEEEeC----------CcchHHhhCCCCCC
Q 023223          103 GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLKKGD  145 (285)
Q Consensus       103 ~~~~~~si~s~p~~~~~~~~l~l~Vk~~~----------G~~s~~L~~l~~Gd  145 (285)
                      .++|+|||+|+|..  .++.++|+|..+.          |-+|.||+++.+|+
T Consensus       212 L~PR~YSISSSp~~--~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~~~  262 (279)
T d1ja1a1         212 LQARYYAIASSSKV--HPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAG  262 (279)
T ss_dssp             CCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCCCS
T ss_pred             CCCceeeEecCccc--CCCEEEEEEEEEEeecCCCCcccccchHHHhhcCCCC
Confidence            46799999999964  2789999987432          67899999988776