Citrus Sinensis ID: 023231

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccEEEEEEccccccccEEccccEEEcccccccEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEccccHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEccccccccEEEccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEcccccEEEEEcccccccccccccccHHEEEEEEEEcccccHHHcHHHHHHcccccHHcHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEcccHHHcccc
MGSSQAAVSFLTNIARAAFGLGAAATVLNsslytvdggeravLFDRFRgvidetigegthflipwlqkpfifdirtrphtfssvsgtkdlqmVNLTLrvlsrpevsrlpYIFQHLgleydekvlpsIGNEVLKAVVAQFNadqllterphvSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLArsphvaylpggknsnmllalnpaltggr
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTfssvsgtkdlqmvNLTLrvlsrpevsRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNadqllterphvSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQeaerskfvvmkADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLArsphvaylpggknsnmllalnpaltggr
MGSSQAAVSFLTNIaraafglgaaaTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRaveqkqvaqqeaeRSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
*******VSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA****************************************LISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPG******************
*************IARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS**S*TKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQV**QEAE****VV*********************QLI***TSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLL***P******
MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA*************SKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
****QAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTGGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
O04331277 Prohibitin-3, mitochondri yes no 0.968 0.996 0.884 1e-142
Q9LK25279 Prohibitin-4, mitochondri no no 0.971 0.992 0.860 1e-138
Q9LY99249 Prohibitin-5, mitochondri no no 0.782 0.895 0.641 1e-88
Q54GI9271 Prohibitin-1, mitochondri yes no 0.936 0.985 0.562 3e-88
Q9P7H3282 Prohibitin-1 OS=Schizosac yes no 0.943 0.953 0.557 7e-88
P40961287 Prohibitin-1 OS=Saccharom yes no 0.887 0.881 0.581 1e-86
P84173272 Prohibitin OS=Gallus gall yes no 0.926 0.970 0.549 1e-83
P35232272 Prohibitin OS=Homo sapien yes no 0.926 0.970 0.553 8e-83
Q3T165272 Prohibitin OS=Bos taurus yes no 0.926 0.970 0.553 8e-83
P67779272 Prohibitin OS=Rattus norv yes no 0.926 0.970 0.549 2e-82
>sp|O04331|PHB3_ARATH Prohibitin-3, mitochondrial OS=Arabidopsis thaliana GN=PHB3 PE=1 SV=1 Back     alignment and function desciption
 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/278 (88%), Positives = 267/278 (96%), Gaps = 2/278 (0%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS QAAVSFL+N+A+AAFGLG AATVLN+SL+TVDGGERAV+FDRFRGV+D+T+GEGTH
Sbjct: 1   MGSQQAAVSFLSNLAKAAFGLGTAATVLNTSLFTVDGGERAVIFDRFRGVMDQTVGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIP LQ+P IFDIRT+PHTFSS+SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ LGLEYD
Sbjct: 61  FLIPILQRPHIFDIRTKPHTFSSISGTKDLQMVNLTLRVLSRPEVSRLPYIFQTLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLI RA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLITRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGL 240
           G EFSRAVEQKQVAQQEAERSKFVVMKADQERRAA+IRAEGESEAAQLIS+AT+K G+GL
Sbjct: 181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query: 241 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 278
           IELRRIEASREIA+TLARSP+VAYLPGG+  +ML ALN
Sbjct: 241 IELRRIEASREIASTLARSPNVAYLPGGQ--SMLFALN 276
Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins (By similarity). Necessary for mitochondrial and cell metabolism and biogenesis. Required to regulate the ethylene-mediated signaling; involved in growth maintainance in the presence of ethylene. Functions in nitric oxide (NO)-mediated responses and in hydrogen peroxide-induced NO accumulation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LK25|PHB4_ARATH Prohibitin-4, mitochondrial OS=Arabidopsis thaliana GN=PHB4 PE=1 SV=1 Back     alignment and function description
>sp|Q9LY99|PHB5_ARATH Prohibitin-5, mitochondrial OS=Arabidopsis thaliana GN=PHB5 PE=1 SV=1 Back     alignment and function description
>sp|Q54GI9|PHB1_DICDI Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1 Back     alignment and function description
>sp|Q9P7H3|PHB1_SCHPO Prohibitin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=phb1 PE=3 SV=1 Back     alignment and function description
>sp|P40961|PHB1_YEAST Prohibitin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHB1 PE=1 SV=2 Back     alignment and function description
>sp|P84173|PHB_CHICK Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1 Back     alignment and function description
>sp|P35232|PHB_HUMAN Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1 Back     alignment and function description
>sp|Q3T165|PHB_BOVIN Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1 Back     alignment and function description
>sp|P67779|PHB_RAT Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
255537009279 prohibitin, putative [Ricinus communis] 0.975 0.996 0.917 1e-147
225452186283 PREDICTED: prohibitin-1, mitochondrial [ 0.992 1.0 0.884 1e-145
224140851279 predicted protein [Populus trichocarpa] 0.968 0.989 0.913 1e-144
224060205276 predicted protein [Populus trichocarpa] 0.968 1.0 0.910 1e-144
449440668279 PREDICTED: prohibitin-1, mitochondrial-l 0.975 0.996 0.885 1e-141
338815361279 RSI1 [Solanum tuberosum] 0.971 0.992 0.881 1e-141
15237488277 prohibitin 3 [Arabidopsis thaliana] gi|7 0.968 0.996 0.884 1e-140
71370257279 PHB1 [Nicotiana benthamiana] 0.968 0.989 0.881 1e-140
297801508277 ATPHB3 [Arabidopsis lyrata subsp. lyrata 0.968 0.996 0.881 1e-140
1946329279 prohibitin [Nicotiana tabacum] 0.968 0.989 0.877 1e-139
>gi|255537009|ref|XP_002509571.1| prohibitin, putative [Ricinus communis] gi|223549470|gb|EEF50958.1| prohibitin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/280 (91%), Positives = 272/280 (97%), Gaps = 2/280 (0%)

Query: 1   MGSSQAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
           MGS+QAAVSFLTN+ARAAFGLGAAAT LN+SLYTVDGG+RAVLFDRFRGVID TIGEGTH
Sbjct: 1   MGSNQAAVSFLTNLARAAFGLGAAATALNASLYTVDGGQRAVLFDRFRGVIDTTIGEGTH 60

Query: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
           FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRP+V+RLPYIFQHLGLEYD
Sbjct: 61  FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPDVTRLPYIFQHLGLEYD 120

Query: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
           EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRA+DFNIVLDDVAITHLSY
Sbjct: 121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAKDFNIVLDDVAITHLSY 180

Query: 181 GAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGL 240
           G EFSRAVEQKQVAQQEAERSKF+VMKADQERRAAIIRAEGESEAA LIS ATSK G+GL
Sbjct: 181 GMEFSRAVEQKQVAQQEAERSKFIVMKADQERRAAIIRAEGESEAAHLISNATSKAGMGL 240

Query: 241 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPA 280
           IELRRIEASRE+A+TLA+SP+VAYLPGG  SNML+ALNP+
Sbjct: 241 IELRRIEASREVASTLAKSPNVAYLPGG--SNMLMALNPS 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452186|ref|XP_002265881.1| PREDICTED: prohibitin-1, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140851|ref|XP_002323792.1| predicted protein [Populus trichocarpa] gi|222866794|gb|EEF03925.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224060205|ref|XP_002300084.1| predicted protein [Populus trichocarpa] gi|222847342|gb|EEE84889.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440668|ref|XP_004138106.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 1 [Cucumis sativus] gi|449440670|ref|XP_004138107.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 2 [Cucumis sativus] gi|449477417|ref|XP_004155017.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 1 [Cucumis sativus] gi|449477420|ref|XP_004155018.1| PREDICTED: prohibitin-1, mitochondrial-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|338815361|gb|AEJ08743.1| RSI1 [Solanum tuberosum] Back     alignment and taxonomy information
>gi|15237488|ref|NP_198893.1| prohibitin 3 [Arabidopsis thaliana] gi|75096997|sp|O04331.1|PHB3_ARATH RecName: Full=Prohibitin-3, mitochondrial; Short=Atphb3; AltName: Full=Protein ENHANCED ETHYLENE RESPONSE 3 gi|1946331|gb|AAC49691.1| prohibitin [Arabidopsis thaliana] gi|4097692|gb|AAD00157.1| prohibitin 3 [Arabidopsis thaliana] gi|9758371|dbj|BAB08838.1| prohibitin [Arabidopsis thaliana] gi|15450838|gb|AAK96690.1| prohibitin [Arabidopsis thaliana] gi|21387093|gb|AAM47950.1| prohibitin [Arabidopsis thaliana] gi|21593231|gb|AAM65180.1| prohibitin [Arabidopsis thaliana] gi|332007209|gb|AED94592.1| prohibitin 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|71370257|gb|AAZ30376.1| PHB1 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|297801508|ref|XP_002868638.1| ATPHB3 [Arabidopsis lyrata subsp. lyrata] gi|297314474|gb|EFH44897.1| ATPHB3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|1946329|gb|AAC49690.1| prohibitin [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
TAIR|locus:2154810277 PHB3 "prohibitin 3" [Arabidops 0.968 0.996 0.805 5.9e-112
TAIR|locus:2086538279 PHB4 "prohibitin 4" [Arabidops 0.971 0.992 0.784 1e-109
TAIR|locus:2145718249 PHB5 "prohibitin 5" [Arabidops 0.515 0.590 0.671 1.8e-74
ASPGD|ASPL0000058983280 AN0686 [Emericella nidulans (t 0.950 0.967 0.537 6.5e-74
UNIPROTKB|G4N4M8275 MGG_06004 "Prohibitin-1" [Magn 0.863 0.894 0.578 1.7e-73
CGD|CAL0000271321 PHB1 [Candida albicans (taxid: 0.838 0.744 0.564 9.9e-71
CGD|CAL0004834321 orf19.357 [Candida albicans (t 0.838 0.744 0.564 9.9e-71
UNIPROTKB|Q5AEB1321 PHB12 "Prohibitin-like protein 0.838 0.744 0.564 9.9e-71
DICTYBASE|DDB_G0290123271 phbA "Prohibitin" [Dictyosteli 0.936 0.985 0.514 2.6e-70
POMBASE|SPAC1782.06c282 phb1 "prohibitin Phb1 (predict 0.866 0.875 0.544 8.9e-70
TAIR|locus:2154810 PHB3 "prohibitin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 224/278 (80%), Positives = 244/278 (87%)

Query:     1 MGSSQAAVSFLTNIXXXXXXXXXXXTVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTH 60
             MGS QAAVSFL+N+           TVLN+SL+TVDGGERAV+FDRFRGV+D+T+GEGTH
Sbjct:     1 MGSQQAAVSFLSNLAKAAFGLGTAATVLNTSLFTVDGGERAVIFDRFRGVMDQTVGEGTH 60

Query:    61 FLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYD 120
             FLIP LQ+P IFDIRT+PHTFSS+SGTKDLQMVNLTLRVLSRPEVSRLPYIFQ LGLEYD
Sbjct:    61 FLIPILQRPHIFDIRTKPHTFSSISGTKDLQMVNLTLRVLSRPEVSRLPYIFQTLGLEYD 120

Query:   121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSY 180
             EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLI RA+DFNIVLDDVAITHLSY
Sbjct:   121 EKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLITRAKDFNIVLDDVAITHLSY 180

Query:   181 GAEFSRXXXXXXXXXXXXXRSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGL 240
             G EFSR             RSKFVVMKADQERRAA+IRAEGESEAAQLIS+AT+K G+GL
Sbjct:   181 GVEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAVIRAEGESEAAQLISDATAKAGMGL 240

Query:   241 IELRRIEASREIAATLARSPHVAYLPGGKNSNMLLALN 278
             IELRRIEASREIA+TLARSP+VAYLPGG++  ML ALN
Sbjct:   241 IELRRIEASREIASTLARSPNVAYLPGGQS--MLFALN 276
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0007005 "mitochondrion organization" evidence=IMP
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0016049 "cell growth" evidence=IMP
GO:0051301 "cell division" evidence=IMP
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA
GO:0048527 "lateral root development" evidence=IMP
GO:0071731 "response to nitric oxide" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2086538 PHB4 "prohibitin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145718 PHB5 "prohibitin 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000058983 AN0686 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4M8 MGG_06004 "Prohibitin-1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAL0000271 PHB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
CGD|CAL0004834 orf19.357 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEB1 PHB12 "Prohibitin-like protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290123 phbA "Prohibitin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC1782.06c phb1 "prohibitin Phb1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04331PHB3_ARATHNo assigned EC number0.88480.96840.9963yesno
P35232PHB_HUMANNo assigned EC number0.55300.92630.9705yesno
Q9P7H3PHB1_SCHPONo assigned EC number0.55750.94380.9539yesno
Q9BKU4PHB1_CAEELNo assigned EC number0.52940.94730.9818yesno
Q9LK25PHB4_ARATHNo assigned EC number0.86020.97190.9928nono
Q3T165PHB_BOVINNo assigned EC number0.55300.92630.9705yesno
P67779PHB_RATNo assigned EC number0.54920.92630.9705yesno
P67778PHB_MOUSENo assigned EC number0.54920.92630.9705yesno
P40961PHB1_YEASTNo assigned EC number0.58100.88770.8815yesno
P84173PHB_CHICKNo assigned EC number0.54920.92630.9705yesno
P24156L2CC_DROMENo assigned EC number0.53580.92980.9601yesno
Q54GI9PHB1_DICDINo assigned EC number0.56290.93680.9852yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020569001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (283 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 1e-119
smart00244160 smart00244, PHB, prohibitin homologues 2e-33
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 3e-26
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 5e-25
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 1e-19
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 2e-13
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 3e-13
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 3e-08
TIGR01933261 TIGR01933, hflK, HflK protein 5e-07
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 7e-07
TIGR01932317 TIGR01932, hflC, HflC protein 2e-04
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 3e-04
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information 
 Score =  339 bits (872), Expect = e-119
 Identities = 133/196 (67%), Positives = 164/196 (83%)

Query: 31  SLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDL 90
           SLY VDGG RAVLF+R  GV D   GEG HF IPW QKP IFD+R RP    S +G+KDL
Sbjct: 1   SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDL 60

Query: 91  QMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPH 150
           QMVN+TLRVL RP+ S+LP I+Q+LG +YDE+VLPSI NEVLKAVVAQF A++L+T+R  
Sbjct: 61  QMVNITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120

Query: 151 VSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQ 210
           VSAL+RE+L +RA+DF I+LDDV+ITHL++  EF++AVE KQVAQQEAER+KFVV KA+Q
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180

Query: 211 ERRAAIIRAEGESEAA 226
           E++AA+IRAEGE+EAA
Sbjct: 181 EKQAAVIRAEGEAEAA 196

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|233644 TIGR01932, hflC, HflC protein Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
KOG3090290 consensus Prohibitin-like protein [Posttranslation 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
KOG3083271 consensus Prohibitin [Posttranslational modificati 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
KOG2621288 consensus Prohibitins and stomatins of the PID sup 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.97
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.97
KOG2620301 consensus Prohibitins and stomatins of the PID sup 99.97
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.96
KOG2962322 consensus Prohibitin-related membrane protease sub 99.94
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.86
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.85
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.84
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.79
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.74
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.59
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.41
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.77
PTZ00491850 major vault protein; Provisional 98.55
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 98.06
PRK13665316 hypothetical protein; Provisional 97.88
COG1580159 FliL Flagellar basal body-associated protein [Cell 96.73
COG4864328 Uncharacterized protein conserved in bacteria [Fun 96.32
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 95.72
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 95.55
PRK06654181 fliL flagellar basal body-associated protein FliL; 95.06
PRK07718142 fliL flagellar basal body-associated protein FliL; 94.45
PRK12785166 fliL flagellar basal body-associated protein FliL; 94.42
PRK11029334 FtsH protease regulator HflC; Provisional 94.4
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 94.37
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 92.48
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 91.22
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 90.9
COG2268548 Uncharacterized protein conserved in bacteria [Fun 89.38
PF0374899 FliL: Flagellar basal body-associated protein FliL 88.31
PRK05697137 flagellar basal body-associated protein FliL-like 85.51
PRK08455182 fliL flagellar basal body-associated protein FliL; 84.23
PRK07021162 fliL flagellar basal body-associated protein FliL; 84.16
PRK10930419 FtsH protease regulator HflK; Provisional 83.85
PRK05696170 fliL flagellar basal body-associated protein FliL; 83.51
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-44  Score=291.49  Aligned_cols=261  Identities=55%  Similarity=0.857  Sum_probs=248.5

Q ss_pred             HHHHHHHHHHHHHhhcceEEecCCceEEEEeeccceeeeeecCceeeecCCcceeEEEeeeeEEeEeeeeccCCCceeEE
Q 023231           15 ARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVN   94 (285)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkD~~~v~   94 (285)
                      ..+++++.+++.....|++.|+.||++++|+|+||+.++++..|+||.+||+++.+.||+|-+.+.+.....|+|-+.|+
T Consensus        21 l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVn  100 (290)
T KOG3090|consen   21 LKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVN  100 (290)
T ss_pred             HHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEE
Confidence            33444555677778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEE
Q 023231           95 LTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVA  174 (285)
Q Consensus        95 v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~  174 (285)
                      +...+--|.+.+.++.+|+++|.||.+..|-.++.+.+++++++|+..++++.|+.++..+++.|-++..++.|-+++|.
T Consensus       101 I~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVS  180 (290)
T KOG3090|consen  101 IGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVS  180 (290)
T ss_pred             eeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCccchHHHHHHHHHHHHH
Q 023231          175 ITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLGLIELRRIEASREIAA  254 (285)
Q Consensus       175 I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea~a~~~~~~a~~~~~p~~~~~~~le~~~~~a~  254 (285)
                      |+++.|.+++..+++.|++|+|||+|+++.++.|+++++..+++|+|||++++++++|.+.+ |.++.+|.+|+-+++|.
T Consensus       181 iT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~nn-~~fi~Lrki~aAr~IA~  259 (290)
T KOG3090|consen  181 ITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN-PAFITLRKIEAAREIAQ  259 (290)
T ss_pred             eeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhCC-ccceeehhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             HhcCCCCEEEecCCCCCceeecCCc
Q 023231          255 TLARSPHVAYLPGGKNSNMLLALNP  279 (285)
Q Consensus       255 ~l~~~~~~~~~~~~~~~~~~~~~~~  279 (285)
                      .++++.|.+|++++   .+++|+.+
T Consensus       260 tia~S~NkvyL~~~---~LlLn~q~  281 (290)
T KOG3090|consen  260 TIASSANKVYLSSD---DLLLNLQD  281 (290)
T ss_pred             HHhcCCCeEEeccc---ceeeeehh
Confidence            99999999999988   77887654

>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 132 LKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191
           L++V+ Q + D+LL+ER  ++  ++  + +    + I +  V I  +   A   +A+   
Sbjct: 66  LRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMA-- 123

Query: 192 QVAQQEAERSKFVVMKADQERRAAIIRAEGESEAAQLISEATSKFGLG--LIELRRIEAS 249
              Q EAER          ERRA I  AE E +AA+ + EA          ++LR ++  
Sbjct: 124 --RQAEAER----------ERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQTI 171

Query: 250 REIAA 254
            ++A 
Sbjct: 172 SDVAG 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.96
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.91
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.84
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.73
2zuo_A 861 MVP, major vault protein; repeat domains, protein- 98.73
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.96  E-value=1.1e-28  Score=203.51  Aligned_cols=172  Identities=24%  Similarity=0.304  Sum_probs=145.8

Q ss_pred             CcceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHhHHHHHhCCccccccccchHHHHHHHHHhcCChhH
Q 023231           65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQ  143 (285)
Q Consensus        65 ~~~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~~~~~~~g~~~~~~~l~~~~~~~lr~~~~~~~~~e  143 (285)
                      |++++.++|++.++++++.+ +.|+|+++|.+++.++|||.  ++..++.+  ..++...+.+.+++.+|+++++++++|
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~~~--v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQ--VKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHHHH--hcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            56899999999999999885 79999999999999999995  45555543  344556788999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023231          144 LLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAIIRAEGES  223 (285)
Q Consensus       144 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a~qeae~~~~~i~~A~aea~~~~~~A~aea  223 (285)
                      ++++|++|+..+++.+++.+.+|||+|.+|.|++++||+++.++|++++              +|+.++++++++|+|++
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~  143 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER  143 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999998753              35566778889999999


Q ss_pred             HHHHHHHHHhh---ccCccchHHHHHHHHHHHHHH
Q 023231          224 EAAQLISEATS---KFGLGLIELRRIEASREIAAT  255 (285)
Q Consensus       224 ~a~~~~~~a~~---~~~p~~~~~~~le~~~~~a~~  255 (285)
                      +|++++++|..   .+ |.++++|++|++.+++.+
T Consensus       144 ~a~~~~a~a~~~~~~~-~~~l~lr~le~~~~ia~~  177 (188)
T 3bk6_A          144 QAAEKLREAAEIISEH-PMALQLRTLQTISDVAGD  177 (188)
T ss_dssp             HHHHHHHHHHHHHHHC-TTHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHhcC
Confidence            99999888753   45 999999999999998875
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 2e-09
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 14/117 (11%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 87  TKDLQMVNLTLRVLSRPE-----VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNA 141
           T +   + +T     +       ++     F    ++  + V+       L++++     
Sbjct: 26  TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85

Query: 142 DQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEA 198
           +Q+  +R   + LVRE          I +    I  +    ++  ++ + Q +   +
Sbjct: 86  EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.79
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=8.8e-21  Score=147.33  Aligned_cols=128  Identities=11%  Similarity=0.115  Sum_probs=110.8

Q ss_pred             ceeEEEeeeeEEeEeeee-ccCCCceeEEEEEEEEEeeCCCCHh--HHHHHh-C--CccccccccchHHHHHHHHHhcCC
Q 023231           67 QKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLP--YIFQHL-G--LEYDEKVLPSIGNEVLKAVVAQFN  140 (285)
Q Consensus        67 ~~v~~~~~~~~~~~~~~~-~~tkD~~~v~v~~~v~y~i~~~~~~--~~~~~~-g--~~~~~~~l~~~~~~~lr~~~~~~~  140 (285)
                      .++.++|++.++++++.+ ++|+||+++.++++++|||.++...  .....| +  .+..+..+++.+++++|+++++++
T Consensus         5 ~s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~   84 (143)
T d1wina_           5 SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT   84 (143)
T ss_dssp             CCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            357789999999999988 6999999999999999999754422  122222 2  345677899999999999999999


Q ss_pred             hhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023231          141 ADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVA  194 (285)
Q Consensus       141 ~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~a  194 (285)
                      +++++++|++|.+++.+.+++.+++||++|.++.|+||++|++|.++|.+++.|
T Consensus        85 l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999876544