Citrus Sinensis ID: 023242

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----

MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSVTCAAASATGSSNSDSELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccc

ccEEEHcHcccccccEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

mamtvsnvfhcpkaevslrnfnsrasisrfppsfvrfpravswdrsvtcaaasatgssnsdselnpyevlgvnpiegFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKrkkgvtfgsfkvskeikfadkqpifpwgprfaksspqdIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLksfepavsptyteegdddgRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYaggfipaflfdnqelivtgSSAVLLFIMASYYR

mamtvsnvfhcpkaevslrnfnsrasisrfppsfvRFPRAVSWDRSVTCAAAsatgssnsdselnpYEVLGVNPIEGFDMVKAVYAKKrkeaernndeataARLEKAYDKLMMEQLskrkkgvtfgsfkvskeikfadkqpifpWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKsfepavsptyteegdddgRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

*******VFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSVTCAA**************PYEVLGVNPIEGFDMVKAVYA***********************************GVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAV*************ALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY*

***T****************************************************************VLGVNPIEGFDMVKAVYAKKRKE*********AARLEKAYDK*********************************************DIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSV***************ELNPYEVLGVNPIEGFDMVKAVYAKK***********TAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

*AMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSVTCAAASAT*******ELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHi

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHi

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSVTCAAASATGSSNSDSELNPYEVLGVNPIEGFDMVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		285
224144561		285	predicted protein [Populus trichocarpa]	1.0	1.0	0.708	1e-115
449465818		285	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.698	1e-110
225453038		285	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.708	1e-106
224123536		253	predicted protein [Populus trichocarpa]	0.887	1.0	0.731	1e-106
358248094		282	uncharacterized protein LOC100814672 [Gl	0.985	0.996	0.709	1e-102
356505987		282	PREDICTED: uncharacterized protein LOC10	0.982	0.992	0.700	1e-101
217075548		285	unknown [Medicago truncatula]	0.978	0.978	0.635	2e-98
297849170		294	heat shock protein binding protein [Arab	0.985	0.955	0.639	1e-97
18390922		294	Chloroplast J-like domain 1-containing p	0.985	0.955	0.639	6e-97
23397051		294	unknown protein [Arabidopsis thaliana]	0.985	0.955	0.639	7e-97

>gi\|224144561\|ref\|XP_002325333.1\| predicted protein [Populus trichocarpa] gi\|222862208\|gb\|EEE99714.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 244/285 (85%)

Query: 1   MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRAVSWDRSVTCAAASATGSSNS 60
           MA+ +SNV +CPK ++SLRN+  ++S+ + P SF+ FPRAV   +S  CA+ASA G S S
Sbjct: 1   MALAISNVLNCPKPQISLRNYTLKSSVLKSPTSFIIFPRAVREHKSFVCASASAAGGSGS 60

Query: 61  DSELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRK 120
           D++LNPYEVLGVNPIEGFD VKA Y KKRKEAE+  DEA AA+LEKAYDKLMM QLS RK
Sbjct: 61  DNDLNPYEVLGVNPIEGFDKVKAAYEKKRKEAEKQGDEAAAAQLEKAYDKLMMAQLSNRK 120

Query: 121 KGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYK 180
           KGVT+GSFKV+K+IK+ADKQP+ PWGPRFAKSS  D+RINLAISAAFTAWI IKR AEYK
Sbjct: 121 KGVTYGSFKVAKDIKYADKQPVVPWGPRFAKSSENDMRINLAISAAFTAWILIKRNAEYK 180

Query: 181 PLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSS 240
           PLQFLAFAFVYR FEKLK+FEP VSPTY+E+G+D+GR LR+GKR+LR LALVFG I  +S
Sbjct: 181 PLQFLAFAFVYRIFEKLKTFEPPVSPTYSEDGEDEGRTLRLGKRILRALALVFGSITFAS 240

Query: 241 LAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 285
           LAYTGILNLIE AG +IPAFL++NQEL++T +++ +L+I+ASYYR
Sbjct: 241 LAYTGILNLIEMAGSYIPAFLYNNQELLITTATSAILYILASYYR 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449465818\|ref\|XP_004150624.1\| PREDICTED: uncharacterized protein LOC101213790 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225453038\|ref\|XP_002266453.1\| PREDICTED: uncharacterized protein LOC100243269 [Vitis vinifera] gi\|302143637\|emb\|CBI22390.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224123536\|ref\|XP_002319104.1\| predicted protein [Populus trichocarpa] gi\|222857480\|gb\|EEE95027.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|358248094\|ref\|NP_001240067.1\| uncharacterized protein LOC100814672 [Glycine max] gi\|255638094\|gb\|ACU19361.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|356505987\|ref\|XP_003521770.1\| PREDICTED: uncharacterized protein LOC100805399 [Glycine max]	Back alignment and taxonomy information

>gi\|217075548\|gb\|ACJ86134.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297849170\|ref\|XP_002892466.1\| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297338308\|gb\|EFH68725.1\| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18390922\|ref\|NP_563823.1\| Chloroplast J-like domain 1-containing protein [Arabidopsis thaliana] gi\|13877839\|gb\|AAK43997.1\|AF370182_1 unknown protein [Arabidopsis thaliana] gi\|16323504\|gb\|AAL15246.1\| unknown protein [Arabidopsis thaliana] gi\|332190204\|gb\|AEE28325.1\| Chloroplast J-like domain 1-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|23397051\|gb\|AAN31811.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		285
TAIR\|locus:2025660		294	CJD1 "Chloroplast J-like domai	0.985	0.955	0.639	1.1e-89

TAIR\|locus:2025660 CJD1 "Chloroplast J-like domain 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 183/286 (63%), Positives = 216/286 (75%)

Query:     1 MAMTVSNVFHCPKAEVSLRNFNSRASISRFPPSFVRFPRA-VSWDRSVTCAAASATGSSN 59
             MA + SN       ++SLRN + RA  S   PSFVR P   V   R V  AA+SA G+  
Sbjct:    13 MAFSTSNALRYHHPQISLRN-SLRAPKS---PSFVRLPLGKVLQSRIVIRAASSAAGNPQ 68

Query:    60 SDSELNPYEVLGVNPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKR 119
             SD++ NPYEVLGVNPIEGFD +K  Y +K K+A+R+ DEATAA LEKAYDKLM  QL  R
Sbjct:    69 SDADFNPYEVLGVNPIEGFDKIKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNR 128

Query:   120 KKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEY 179
             KKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWIAIKR  EY
Sbjct:   129 KKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEY 188

Query:   180 KPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVS 239
             KPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+LVFG I ++
Sbjct:   189 KPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLA 248

Query:   240 SLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 285
             SLAYTG LN IEY G  IP  L++NQELIVT SSA +L+++AS+YR
Sbjct:   249 SLAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       285   0.00085  115 3  11 22  0.46    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  186 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.84u 0.11s 25.95t   Elapsed:  00:00:01
  Total cpu time:  25.84u 0.11s 25.95t   Elapsed:  00:00:01
  Start:  Mon May 20 19:54:17 2013   End:  Mon May 20 19:54:18 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0031969 "chloroplast membrane" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XIX0521	hypothetical protein (286 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		285
pfam11833		193	pfam11833, DUF3353, Protein of unknown function (D	7e-10

>gnl\|CDD\|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353)	Back alignment and domain information

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 47/221 (21%)

Query: 77  GFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKF 136
            F+ ++A  A+ R  AE   DE   A++E AYD ++M++L +R++G      KV + I++
Sbjct: 5   SFEEIQA--ARNRLLAEYAGDEQARAKIEAAYDAILMQRLRERQEGKI----KVPEAIRY 58

Query: 137 ADKQ----------PIFPW----GPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPL 182
           A++           P   W     P F   S Q + I L +       + ++       L
Sbjct: 59  AERAGKPAASKPVNPSPAWLQRLLPSFDLPSGQGLLIRLVLFGLLALLLLLQGPPSGPQL 118

Query: 183 QFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLA 242
           Q LA       +     F                   R G+R  R L    G + V  L 
Sbjct: 119 Q-LALGTGACIY-----FL-----------------NRKGRRFGRALLWSLGGLVVGLLL 155

Query: 243 YTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASY 283
            + +  L+      +P  L  + E I +  + +LL++ + +
Sbjct: 156 GSLLAVLL--PPFILPGSL--SPEQIQSLPAYLLLWLGSLF 192

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		285
PF11833		194	DUF3353: Protein of unknown function (DUF3353); In	100.0
KOG0721		230	consensus Molecular chaperone (DnaJ superfamily) [	99.83
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	99.57
KOG0713		336	consensus Molecular chaperone (DnaJ superfamily) [	99.45
PTZ00037		421	DnaJ_C chaperone protein; Provisional	99.41
PRK14296		372	chaperone protein DnaJ; Provisional	99.39
PRK14288		369	chaperone protein DnaJ; Provisional	99.36
PRK14286		372	chaperone protein DnaJ; Provisional	99.31
PRK14287		371	chaperone protein DnaJ; Provisional	99.3
PRK14299		291	chaperone protein DnaJ; Provisional	99.29
PRK14276		380	chaperone protein DnaJ; Provisional	99.29
PRK14279		392	chaperone protein DnaJ; Provisional	99.28
PRK14282		369	chaperone protein DnaJ; Provisional	99.28
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.25
PRK14283		378	chaperone protein DnaJ; Provisional	99.25
PRK14280		376	chaperone protein DnaJ; Provisional	99.24
PRK14278		378	chaperone protein DnaJ; Provisional	99.23
PRK14294		366	chaperone protein DnaJ; Provisional	99.23
PRK14277		386	chaperone protein DnaJ; Provisional	99.22
PRK14301		373	chaperone protein DnaJ; Provisional	99.22
PRK14297		380	chaperone protein DnaJ; Provisional	99.22
PRK10767		371	chaperone protein DnaJ; Provisional	99.22
PRK14298		377	chaperone protein DnaJ; Provisional	99.22
PRK14285		365	chaperone protein DnaJ; Provisional	99.21
PF00226		64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.2
KOG0712		337	consensus Molecular chaperone (DnaJ superfamily) [	99.2
PRK14295		389	chaperone protein DnaJ; Provisional	99.19
PRK14291		382	chaperone protein DnaJ; Provisional	99.19
smart00271		60	DnaJ DnaJ molecular chaperone homology domain.	99.18
PRK14300		372	chaperone protein DnaJ; Provisional	99.16
PRK14281		397	chaperone protein DnaJ; Provisional	99.16
PHA03102		153	Small T antigen; Reviewed	99.16
PRK14284		391	chaperone protein DnaJ; Provisional	99.16
PTZ00100		116	DnaJ chaperone protein; Provisional	99.15
PRK10266		306	curved DNA-binding protein CbpA; Provisional	99.15
cd06257		55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.15
PRK14289		386	chaperone protein DnaJ; Provisional	99.12
KOG0715		288	consensus Molecular chaperone (DnaJ superfamily) [	99.1
TIGR02349		354	DnaJ_bact chaperone protein DnaJ. This model repre	99.1
PRK14290		365	chaperone protein DnaJ; Provisional	99.1
KOG0716		279	consensus Molecular chaperone (DnaJ superfamily) [	99.07
PRK14292		371	chaperone protein DnaJ; Provisional	99.07
PRK14293		374	chaperone protein DnaJ; Provisional	99.05
KOG0718		546	consensus Molecular chaperone (DnaJ superfamily) [	98.96
KOG0719		264	consensus Molecular chaperone (DnaJ superfamily) [	98.92
PTZ00341		1136	Ring-infected erythrocyte surface antigen; Provisi	98.92
KOG0691		296	consensus Molecular chaperone (DnaJ superfamily) [	98.9
KOG0717		508	consensus Molecular chaperone (DnaJ superfamily) [	98.86
PRK09430		267	djlA Dna-J like membrane chaperone protein; Provis	98.85
COG2214		237	CbpA DnaJ-class molecular chaperone [Posttranslati	98.82
TIGR03835		871	termin_org_DnaJ terminal organelle assembly protei	98.7
PHA02624		647	large T antigen; Provisional	98.7
KOG0720		490	consensus Molecular chaperone (DnaJ superfamily) [	98.48
PRK05014		171	hscB co-chaperone HscB; Provisional	98.3
KOG0624		504	consensus dsRNA-activated protein kinase inhibitor	98.21
PRK01356		166	hscB co-chaperone HscB; Provisional	98.16
PRK00294		173	hscB co-chaperone HscB; Provisional	98.11
KOG0550		486	consensus Molecular chaperone (DnaJ superfamily) [	98.11
KOG0714		306	consensus Molecular chaperone (DnaJ superfamily) [	98.09
PRK03578		176	hscB co-chaperone HscB; Provisional	98.09
KOG0723		112	consensus Molecular chaperone (DnaJ superfamily) [	98.07
KOG0722		329	consensus Molecular chaperone (DnaJ superfamily) [	97.94
KOG1150		250	consensus Predicted molecular chaperone (DnaJ supe	97.92
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	96.97
KOG0568		342	consensus Molecular chaperone (DnaJ superfamily) [	96.89
PRK01773		173	hscB co-chaperone HscB; Provisional	96.72
PF03656		127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.21
COG1076		174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.19
PF13446		62	RPT: A repeated domain in UCH-protein	96.1
TIGR00714		157	hscB Fe-S protein assembly co-chaperone HscB. This	95.68
COG5269		379	ZUO1 Ribosome-associated chaperone zuotin [Transla	95.15
COG4858		226	Uncharacterized membrane-bound protein conserved i	93.6
PF06570		206	DUF1129: Protein of unknown function (DUF1129); In	91.31

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised	Back alignment and domain information

Probab=100.00  E-value=3e-42  Score=306.76  Aligned_cols=177  Identities=32%  Similarity=0.455  Sum_probs=154.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhhcHHHHhhhhccCCCCcccccchhcccc-----------CC
Q 023242           73 NPIEGFDMVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK-----------QP  141 (285)
Q Consensus        73 ~~~AS~eEIk~AYRrl~l~~~~~gde~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~~v~~~ir~ad~-----------~~  141 (285)
                      ++|||||||++|+.  .+.++|+||++..++||+|||+|+|++||+||+    ||+++++++||+|+           .+
T Consensus         1 S~~ASfeEIq~Arn--~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~----Gki~v~~~ir~ad~~~~~~~~~~~~~~   74 (194)
T PF11833_consen    1 SEDASFEEIQAARN--RLLAQYAGDEKSREAIEAAYDAILMERLRQRQK----GKIKVPERIRYADREEPKPPNPKPSNP   74 (194)
T ss_pred             CCCCCHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc----CCCCccHHHHHhhhccccccCCCCCCc
Confidence            68999999999954  444568999999999999999999999999999    79999999999998           35


Q ss_pred             CCCCCcc----ccCCChhHHHHHHHHHHHHHHHhhccCCCCchHHHHHH--HHHHHHHHhhhccCCCCCCCCCCCCCCcc
Q 023242          142 IFPWGPR----FAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLA--FAFVYRFFEKLKSFEPAVSPTYTEEGDDD  215 (285)
Q Consensus       142 ~~pW~~r----~~~Ps~~~i~~~~~~~~~l~~~~~~~~~~~~~~l~~l~--~a~vyfl~~K~~~~~p~~~~~~~~~~~~~  215 (285)
                      .++|++|    +.+|+.+++.+++++|++|++|+++.+.++.+++++++  ++||||+|+|++++               
T Consensus        75 ~p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~---------------  139 (194)
T PF11833_consen   75 SPPWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKL---------------  139 (194)
T ss_pred             cchHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchH---------------
Confidence            5679998    57999999999999999999999997555555565444  88999999999999               


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCccCCccccchhHHHHHHHHHHHHHHHhhcC
Q 023242          216 GRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY  284 (285)
Q Consensus       216 gRa~~~~~rl~~~~~Lv~G~~~gs~l~~t~~l~~i~~~~~~~p~~~~~~~e~~~s~~~~v~l~~~~sfl  284 (285)
                      |||+     ++++++|++||++|++|.  +|++     ...+|..+  +.|+++|+++|++||++|+||
T Consensus       140 ~rA~-----~~~~~~L~~G~~lGs~l~--~~l~-----~~~~p~~~--s~~~~~sl~~~i~lwl~s~fL  194 (194)
T PF11833_consen  140 GRAF-----LWTLGGLVVGLILGSLLA--SWLP-----VDIVPGPW--SPEQLVSLFTYILLWLVSLFL  194 (194)
T ss_pred             HHHH-----HHHHHHHHHHHHHHHHHH--hhcc-----cccCCCCC--CHHHHHHHHHHHHHHHHHhcC
Confidence            9999     999999999999999998  7874     22334222  789999999999999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00037 DnaJ_C chaperone protein; Provisional	Back alignment and domain information

>PRK14296 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14288 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14286 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14287 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14299 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14276 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14279 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14282 chaperone protein DnaJ; Provisional	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14283 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14280 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14278 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14294 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14277 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14301 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14297 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK10767 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14298 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14285 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []	Back alignment and domain information

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14295 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14291 chaperone protein DnaJ; Provisional	Back alignment and domain information

>smart00271 DnaJ DnaJ molecular chaperone homology domain	Back alignment and domain information

>PRK14300 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14281 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PHA03102 Small T antigen; Reviewed	Back alignment and domain information

>PRK14284 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PTZ00100 DnaJ chaperone protein; Provisional	Back alignment and domain information

>PRK10266 curved DNA-binding protein CbpA; Provisional	Back alignment and domain information

>cd06257 DnaJ DnaJ domain or J-domain	Back alignment and domain information

>PRK14289 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02349 DnaJ_bact chaperone protein DnaJ	Back alignment and domain information

>PRK14290 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14292 chaperone protein DnaJ; Provisional	Back alignment and domain information

>PRK14293 chaperone protein DnaJ; Provisional	Back alignment and domain information

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional	Back alignment and domain information

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional	Back alignment and domain information

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ	Back alignment and domain information

>PHA02624 large T antigen; Provisional	Back alignment and domain information

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK05014 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]	Back alignment and domain information

>PRK01356 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PRK00294 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK03578 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK01773 hscB co-chaperone HscB; Provisional	Back alignment and domain information

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []	Back alignment and domain information

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13446 RPT: A repeated domain in UCH-protein	Back alignment and domain information

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB	Back alignment and domain information

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		285
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 41/327 (12%), Positives = 87/327 (26%), Gaps = 105/327 (32%)

Query: 15  EVSLRNFNSRASISRFPPSFVR---------FPRAVSWDRSVTCAAASATGSSNSDSELN 65
           E     +  +  +S F  +FV           P+++                  S  E++
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-----------------SKEEID 52

Query: 66  PYEVLGV-NPIEGFDMVKAVYAKKRKE-AERNNDEATAARLEKAYDKLMMEQLSKRKKGV 123
              ++   + + G   +      K++E  ++  +E     L   Y  LM   +   ++  
Sbjct: 53  --HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV----LRINYKFLM-SPIKTEQRQP 105

Query: 124 TFG--SFKVSKEIKFADKQPIFPWG-PR---------------------------FAKSS 153
           +     +   ++  + D Q    +   R                             K+ 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 154 PQDIRINLAISAAFTA-----------WIAIKRYAE----YKPLQFLAFAFVYRFFEKLK 198
                  +A+    +            W+ +K         + LQ L +     +  +  
Sbjct: 166 -------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 199 SFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIP 258
                           + R L   K    CL LV     + ++      N          
Sbjct: 219 HSSNI--KLRIHSIQAELRRLLKSKPYENCL-LV-----LLNVQNAKAWN---------- 260

Query: 259 AFLFDNQELIVTGSSAVLLFIMASYYR 285
           AF    + L+ T    V  F+ A+   
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTT 287

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		285
2ej7_A		82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.46
2guz_A		71	Mitochondrial import inner membrane translocase su	99.44
2dn9_A		79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.42
2och_A		73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.42
2yua_A		99	Williams-beuren syndrome chromosome region 18 prot	99.41
2ctp_A		78	DNAJ homolog subfamily B member 12; J-domain, chap	99.41
2o37_A		92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.39
2ctw_A		109	DNAJ homolog subfamily C member 5; J-domain, chape	99.39
2dmx_A		92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.38
2ctr_A		88	DNAJ homolog subfamily B member 9; J-domain, chape	99.38
1hdj_A		77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.37
2cug_A		88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.37
2ys8_A		90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.36
1wjz_A		94	1700030A21RIK protein; J-domain, DNAJ like protein	99.36
1faf_A		79	Large T antigen; J domain, HPD motif, anti-paralle	99.35
2ctq_A		112	DNAJ homolog subfamily C member 12; J-domain, chap	99.31
1bq0_A		103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.29
2lgw_A		99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.24
1gh6_A		114	Large T antigen; tumor suppressor, oncoprotein, an	99.24
2qsa_A		109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.21
1iur_A		88	KIAA0730 protein; DNAJ like domain, riken structur	99.2
2pf4_E		174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.2
3apq_A		210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.18
2l6l_A		155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.17
3lz8_A		329	Putative chaperone DNAJ; structure genomics, struc	99.15
2qwo_B		92	Putative tyrosine-protein phosphatase auxilin; cha	99.06
3ag7_A		106	Putative uncharacterized protein F9E10.5; J-domain	98.96
1n4c_A		182	Auxilin; four helix bundle, protein binding; NMR {	98.9
3apo_A		780	DNAJ homolog subfamily C member 10; PDI family, th	98.88
3hho_A		174	CO-chaperone protein HSCB homolog; structural geno	98.88
2guz_B		65	Mitochondrial import inner membrane translocase su	98.86
3bvo_A		207	CO-chaperone protein HSCB, mitochondrial precurso;	98.8
1fpo_A		171	HSC20, chaperone protein HSCB; molecular chaperone	98.8
3uo3_A		181	J-type CO-chaperone JAC1, mitochondrial; structura	98.66
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	97.72
2pzi_A		681	Probable serine/threonine-protein kinase PKNG; ATP	89.63

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

Probab=99.46  E-value=7.9e-14  Score=105.81  Aligned_cols=70  Identities=30%  Similarity=0.409  Sum_probs=55.0

Q ss_pred             CCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCCCc-----HHHHHHHHHHHHHhhcHHHHhhhhccCCCC
Q 023242           56 GSSNSDSELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERNND-----EATAARLEKAYDKLMMEQLSKRKKGVTFGS  127 (285)
Q Consensus        56 g~~~~~~~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~gd-----e~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk  127 (285)
                      |+++.....|+|++|||+++||.+|||+|||++++.  ++..++     +++|++|++||++|+++.  +|+.++.+|.
T Consensus         1 g~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~--~R~~YD~~g~   77 (82)
T 2ej7_A            1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK--KRDIYDRYGS   77 (82)
T ss_dssp             CCSCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTT--HHHHHHHTCC
T ss_pred             CCCCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHcCc
Confidence            344555678999999999999999999999999984  333322     579999999999999998  4555545553

PyMOL of 2ej7

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A	Back alignment and structure

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}	Back alignment and structure

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1	Back alignment and structure

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1	Back alignment and structure

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A	Back alignment and structure

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}	Back alignment and structure

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1	Back alignment and structure

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}	Back alignment and structure

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1	Back alignment and structure

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C	Back alignment and structure

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}	Back alignment and structure

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}	Back alignment and structure

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A	Back alignment and structure

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A	Back alignment and structure

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J	Back alignment and structure

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}	Back alignment and structure

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}	Back alignment and structure

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1	Back alignment and structure

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		285
d1xbla_		75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.47
d1gh6a_		114	Large T antigen, the N-terminal J domain {Simian v	99.39
d1hdja_		77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1fafa_		79	Large T antigen, the N-terminal J domain {Murine p	99.37
d1wjza_		94	CSL-type zinc finger-containing protein 3 (J-domai	99.29
d1iura_		88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.01
d1fpoa1		76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	98.95
d1nz6a_		98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	98.83

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.4e-14  Score=106.51  Aligned_cols=64  Identities=27%  Similarity=0.403  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHhhh--hcCC-C---cHHHHHHHHHHHHHhhcHHHHhhhhccCCCCc
Q 023242           63 ELNPYEVLGVNPIEGFDMVKAVYAKKRKE--AERN-N---DEATAARLEKAYDKLMMEQLSKRKKGVTFGSF  128 (285)
Q Consensus        63 ~~dpYevLGV~~~AS~eEIk~AYRrl~l~--~~~~-g---de~~f~~Ie~AYd~L~~~~lr~R~~g~~~Gk~  128 (285)
                      .+|+|++|||+++||.+|||+|||++++.  ++.. +   .+++|++|++||++|+|+.  .|+.++.||..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~--~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ--KRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSH--HHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHH--HHHHHHHhCcc
Confidence            57999999999999999999999999984  3322 2   2678999999999999998  56666666653

PyMOL of d1xbla_

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}	Back information, alignment and structure

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}	Back information, alignment and structure

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure