Citrus Sinensis ID: 023246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Secondary Structure (PSIPRED)
ccEEEEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccEEEEccccccccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccccccccccccccEEEEcccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEcccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccccEEEEEccccEEEEEEEEEcccccccccccccHHHcccHccccccccEEEEEEccccEEEEEEccccEEEEcccccccccccccccccccccccccEEEccccccEEEEEEEcccccEEEEEEcccccEEEEEcccHHHEEEEcccccEEEEccccccccEEEEccccccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MNSIRLNAividprnpnyfavggsdeyaRVYDirkchwyspissdtpvdtfcprhligknnihitglaysntSELLISYNDELVYLFEknmglgpsplslspedlqkreepqvysghrnsqtvkgvnffgpndeyvmsgsdcghlfiwkkkggKLVRLMVGdrhvvnqlephphipmfatcgiektvklwapmptdfpplpdnAEKIMKANKqgredhsritltpDVIMHVLRLQRRQTLAYRErrynaadfesdeeegetyllgfsdsdassegggnqreciis
Flexible Loop (DISEMBL)
MNSIRLNAividprnpnyfaVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPqvysghrnsqtvkgvNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANkqgredhsritltpdvimhVLRLQRRQTLAYRERRynaadfesdeeeGETYLLGfsdsdassegggnqreciis
Low Complexity Region (SEG)
MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Disordered region (IsUnstruct)
****RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM*******************************VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP**************************ITLTPDVIMHVLRLQRRQTLAYRERRY**************************************
Disordered Region (DISOPRED)
*NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD**************************LTPDVIMHVLRL***************************************************
Disordered Region (DISEMBL)
MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDL************RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAA**********TYLLGFSDS****************
Disordered Region (DISPRO)
*NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR******************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q5R448	597	DDB1- and CUL4-associated	yes	no	0.687	0.328	0.427	1e-42
Q8N7N5	591	DDB1- and CUL4-associated	yes	no	0.698	0.336	0.424	2e-42
Q5TAQ9	597	DDB1- and CUL4-associated	yes	no	0.687	0.328	0.423	6e-42
Q6NRH1	601	DDB1- and CUL4-associated	N/A	no	0.698	0.331	0.424	6e-42
Q5U2M6	591	DDB1- and CUL4-associated	yes	no	0.687	0.331	0.423	6e-42
Q28I90	604	DDB1- and CUL4-associated	yes	no	0.698	0.329	0.420	2e-41
A6NGE4	600	DDB1- and CUL4-associated	no	no	0.817	0.388	0.368	2e-37
P0C7V8	602	DDB1- and CUL4-associated	no	no	0.698	0.330	0.378	8e-36
Q58WW2	860	DDB1- and CUL4-associated	no	no	0.277	0.091	0.512	1e-19
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.277	0.091	0.512	1e-19

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 137/222 (61%), Gaps = 26/222 (11%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
           + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+ G++  
Sbjct: 332 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK---IDENENNGVLKKFCPHHLVNGESKA 388

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT L YS + +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct: 389 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----YKGHRNNA 435

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct: 436 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 495

Query: 181 CGIEKTVKLWAPMP---TDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+WAP     T+   L D    ++K NK+ R++ S
Sbjct: 496 SGLDHDVKIWAPTAEASTELTGLKD----VIKKNKRERDEDS 533

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.
Pongo abelii (taxid: 9601)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 135/219 (61%), Gaps = 20/219 (9%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
           + L  I ++P N + FAVGG D+Y R+YD RK        ++  +  FCP HL+  ++  
Sbjct: 326 VGLYTIYVNPANTHQFAVGGRDQYVRIYDQRK---IDENENNGVLKKFCPHHLVNSESKA 382

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT L YS + +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct: 383 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----YKGHRNNA 429

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct: 430 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 489

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+WAP       L    ++++K NK+ R++ S
Sbjct: 490 SGLDHDVKIWAPTAEASTELT-GLKEVIKKNKRERDEDS 527

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 26/222 (11%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
           + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+  ++  
Sbjct: 332 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK---IDENENNGVLKKFCPHHLVNSESKA 388

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT L YS + +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct: 389 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----YKGHRNNA 435

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct: 436 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 495

Query: 181 CGIEKTVKLWAPMP---TDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+WAP     T+   L D    ++K NK+ R++ S
Sbjct: 496 SGLDHDVKIWAPTAEASTELTGLKD----VIKKNKRERDEDS 533

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q6NRH1|DCAF8_XENLA DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 134/219 (61%), Gaps = 20/219 (9%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
           + L  I ++P N   FAVGG D++ R+YD RK    +   ++  +  FCP HL+  +   
Sbjct: 335 VGLYTIYVNPANTYQFAVGGRDQFVRIYDQRK---INENVNNGVLKKFCPHHLVTSEAKA 391

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT L YS + SELL SYNDE +YLF  +   G              E  + Y GHRN+ 
Sbjct: 392 NITCLVYSHDGSELLASYNDEDIYLFNSSHSDGA-------------EYIKRYKGHRNNA 438

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++V+ M GD+  VVN LEPHPH+P+ AT
Sbjct: 439 TVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMDGDKGGVVNCLEPHPHLPVLAT 498

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+W P   + P   D  ++++K NK+ R++ S
Sbjct: 499 SGLDYDVKIWLPTAKE-PTELDGLKEVIKKNKRERDEDS 536

Xenopus laevis (taxid: 8355)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 26/222 (11%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
           + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+  ++  
Sbjct: 326 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRK---IDENENNGVLKKFCPHHLVNSESKA 382

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT L YS + +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct: 383 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----YKGHRNNA 429

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct: 430 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 489

Query: 181 CGIEKTVKLWAPMP---TDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+WAP     T+   L D    ++K NK+ R++ S
Sbjct: 490 SGLDHDVKIWAPTAEASTELTGLKD----VIKKNKRERDEDS 527

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q28I90|DCAF8_XENTR DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis GN=dcaf8 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 134/219 (61%), Gaps = 20/219 (9%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
           + L  I ++P N   FAVGG D++ R+YD RK    +   ++  +  FCP HL+  +   
Sbjct: 338 VGLYTIYVNPANTYQFAVGGRDQFVRIYDQRK---INENVNNGVLKKFCPHHLVTSEAKA 394

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT L YS + SELL SYNDE +YLF  +   G              E  + Y GHRN+ 
Sbjct: 395 NITCLVYSHDGSELLASYNDEDIYLFNSSHSDGA-------------EYIKRYKGHRNNA 441

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++V+ M GD+  VVN LEPHPH+P+ AT
Sbjct: 442 TVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMDGDKGGVVNCLEPHPHLPVLAT 501

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+W P   + P   +  ++++K NK+ R++ S
Sbjct: 502 SGLDYDVKIWLPTAKE-PTELNGLKEVIKKNKRERDEDS 539

Xenopus tropicalis (taxid: 8364)

>sp|A6NGE4|DC8L1_HUMAN DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 146/263 (55%), Gaps = 30/263 (11%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-I 62
           + L  I ++P N   FAVGG D++ R+YD R+        ++  +  F P HL+  +   
Sbjct: 335 VGLYTISMNPANIYQFAVGGHDQFVRIYDQRR---IDKKENNGVLKKFTPHHLVYCDFPT 391

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT + YS + +ELL SYNDE +YLF  ++  G   +        KR     Y GHRN+ 
Sbjct: 392 NITCVVYSHDGTELLASYNDEDIYLFNSSLSDGAQYV--------KR-----YKGHRNND 438

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFAT 180
           T+K VNF+GP  E+V+SGSDCGH+F W+K   ++++ M GDR  +VN LEPHP++P+ AT
Sbjct: 439 TIKCVNFYGPRSEFVVSGSDCGHVFFWEKSSSQIIQFMEGDRGDIVNCLEPHPYLPVLAT 498

Query: 181 CGIEKTVKLWAP---MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 237
            G+++ V++W P     T+   L D    ++K NKQ R D   +  T      +LR   R
Sbjct: 499 SGLDQHVRIWTPTAKTATELTGLKD----VIKKNKQER-DEDNLNYTDSFDNRMLRFFVR 553

Query: 238 QTLAYRER---RYNAADFESDEE 257
             L    +   R + A+F  +EE
Sbjct: 554 HLLQRAHQPGWRDHGAEFPDEEE 576

Homo sapiens (taxid: 9606)

>sp|P0C7V8|DC8L2_HUMAN DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1

 Score =  150 bits (380), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 20/219 (9%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-I 62
           + L  I ++P N   FAVGG D++ R+YD RK        ++  +  F P HL+  +   
Sbjct: 338 VGLYTITVNPANTYQFAVGGQDQFVRIYDQRKI---DKKENNGVLKKFTPHHLVNCDFPT 394

Query: 63  HITGLAYS-NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +IT + YS + +ELL SYND+ +YLF  +   G            KR     + GHRN+ 
Sbjct: 395 NITCVVYSHDGTELLASYNDDDIYLFNSSHSDGAQ--------YSKR-----FKGHRNNT 441

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFAT 180
           TVKGVNF+GP  E+V+SGSDCGH+F W+K   ++++ + G R   +N LEPHP++P+ A 
Sbjct: 442 TVKGVNFYGPRSEFVVSGSDCGHIFFWEKSSCQIIQFLKGSREGTINCLEPHPYLPVLAC 501

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS 219
            G++  VK+W P       L    +K++K NK  R++ S
Sbjct: 502 SGLDHDVKIWTPTAKAATELT-GLKKVIKKNKWERDEDS 539

Homo sapiens (taxid: 9606)

>sp|Q58WW2|DCAF6_HUMAN DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 113 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 171
           VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct: 712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 769

Query: 172 HPHIPMFATCGIEKTVKLWAPM 193
           HP  P+ A+ GI+  +K+W+P+
Sbjct: 770 HPFDPILASSGIDYDIKIWSPL 791

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 113 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 171
           VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct: 712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 769

Query: 172 HPHIPMFATCGIEKTVKLWAPM 193
           HP  P+ A+ GI+  +K+W+P+
Sbjct: 770 HPFDPILASSGIDYDIKIWSPL 791

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
255582975	479	WD-repeat protein, putative [Ricinus com	0.996	0.592	0.762	1e-129
356557481	488	PREDICTED: DDB1- and CUL4-associated fac	1.0	0.584	0.728	1e-119
225435193	479	PREDICTED: DDB1- and CUL4-associated fac	0.992	0.590	0.724	1e-119
356547206	488	PREDICTED: DDB1- and CUL4-associated fac	1.0	0.584	0.714	1e-117
357453735	478	DDB1- and CUL4-associated factor [Medica	0.989	0.589	0.690	1e-114
113205238	454	WD domain containing protein, putative [	0.975	0.612	0.693	1e-112
297815706	481	transducin family protein [Arabidopsis l	0.971	0.575	0.660	1e-108
15231191	481	transducin/WD40 domain-containing protei	0.971	0.575	0.660	1e-107
334185746	515	transducin/WD40 domain-containing protei	0.971	0.537	0.660	1e-107
449463637	480	PREDICTED: DDB1- and CUL4-associated fac	0.992	0.589	0.652	1e-105

>gi|255582975|ref|XP_002532257.1| WD-repeat protein, putative [Ricinus communis] gi|223528045|gb|EEF30123.1| WD-repeat protein, putative [Ricinus communis]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/286 (76%), Positives = 251/286 (87%), Gaps = 2/286 (0%)

Query: 2   NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 61
           N IRLNAIVIDPRNP+YFAVGGSDEYARVYDIRKC W +  +SD  V+TFCPRHLIG  N
Sbjct: 194 NWIRLNAIVIDPRNPHYFAVGGSDEYARVYDIRKCRWDASSNSDIAVNTFCPRHLIGTKN 253

Query: 62  IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           +HITGLAYS+TSELL SYNDEL+YLF+K+MG+GP PLS+S EDLQK EEPQVY GHRNS+
Sbjct: 254 VHITGLAYSSTSELLASYNDELIYLFQKSMGMGPYPLSISSEDLQKLEEPQVYLGHRNSK 313

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 181
           TVKGV+FFGPNDEYV+SGSDCG++FIWKK+GGKLVRLM GDR VVNQ +PHPH+PMFATC
Sbjct: 314 TVKGVSFFGPNDEYVLSGSDCGNIFIWKKQGGKLVRLMFGDRQVVNQFDPHPHMPMFATC 373

Query: 182 GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241
           GIEK+VKLW PM ++   +PDN EKIM++N+QGREDHS+++LTPDVIMHVLRLQRRQTLA
Sbjct: 374 GIEKSVKLWIPMASEDSSIPDNVEKIMESNRQGREDHSQVSLTPDVIMHVLRLQRRQTLA 433

Query: 242 YRERRYNAADFESDEEEGETYLLGFSDSDASSEGG--GNQRECIIS 285
           Y ERRY+  D ESDE+EG+ Y+LGFS  DASSE G  GN REC IS
Sbjct: 434 YIERRYSRGDVESDEDEGDAYVLGFSAGDASSEEGSEGNSRECNIS 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557481|ref|XP_003547044.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/287 (72%), Positives = 239/287 (83%), Gaps = 2/287 (0%)

Query: 1   MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 60
           ++ + LN+IVIDPRNP YFA+GGSDEYARVYDIRKC W S  +SD PV+TFCP HLIG N
Sbjct: 202 LSKVGLNSIVIDPRNPYYFAIGGSDEYARVYDIRKCQWGSARNSDRPVNTFCPCHLIGSN 261

Query: 61  NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 120
           N+HITGLAYS+ SELL+SYNDEL+YLFEKN+    SP S + ED +   E QVYSGHRN+
Sbjct: 262 NVHITGLAYSSFSELLVSYNDELIYLFEKNVHSDSSPSSATSEDPKNIHEAQVYSGHRNA 321

Query: 121 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT 180
           QT+KGVNFFGPNDEY+MSGSDCGH+FIWKKK  KLVRLMVGD+HVVNQLE HPHIP+ AT
Sbjct: 322 QTIKGVNFFGPNDEYIMSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQLEAHPHIPILAT 381

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240
           CGIEK VK+WAP+  D PPLP N ++IM+ N+QGRED SR+TLTPDVIMHVLRLQRRQTL
Sbjct: 382 CGIEKNVKIWAPLGNDIPPLPANVKEIMETNRQGREDRSRVTLTPDVIMHVLRLQRRQTL 441

Query: 241 AYRERRYNAADFESDEEEGETYLLGFSDSDASSE--GGGNQRECIIS 285
           AY ERR+N AD  SDEE+ E YLLGFSD DASSE    GN R+C IS
Sbjct: 442 AYIERRHNRADIVSDEEDAEGYLLGFSDGDASSEEDSPGNSRDCNIS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435193|ref|XP_002284848.1| PREDICTED: DDB1- and CUL4-associated factor 8 [Vitis vinifera] gi|297746195|emb|CBI16251.3| unnamed protein product [Vitis vinifera]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/287 (72%), Positives = 243/287 (84%), Gaps = 4/287 (1%)

Query: 2   NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 61
           N+I LNAIVIDPRNPNYFAVGGSDEYARVYDIRK    S  + D PV+TFCP HL+G + 
Sbjct: 194 NNISLNAIVIDPRNPNYFAVGGSDEYARVYDIRKHQCDSSNNLDGPVNTFCPHHLVGAD- 252

Query: 62  IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
           ++ITGLAYSNTSELL+SYNDEL+YLF+KNMG+GP+PLS+ PE+LQK E+PQVY GHRNSQ
Sbjct: 253 VYITGLAYSNTSELLVSYNDELIYLFQKNMGMGPTPLSVPPEELQKLEKPQVYLGHRNSQ 312

Query: 122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 181
           TVK V+FFGP D+YV+SGSDCGH+F+WKKKG KLVRL  GD+ +VN LEPHP++P+FA+C
Sbjct: 313 TVKSVSFFGPTDDYVLSGSDCGHIFVWKKKGAKLVRLTAGDQQIVNHLEPHPYMPIFASC 372

Query: 182 GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA 241
           GIE ++KLW PM     PLPD+AEKIM++N+QGREDHS ITLTPDVIMHVLRLQRRQ  A
Sbjct: 373 GIENSIKLWIPMADGSLPLPDDAEKIMESNRQGREDHSLITLTPDVIMHVLRLQRRQNAA 432

Query: 242 YRERRYNAADFESDEE-EGETYLLGFSDSDASSEGG--GNQRECIIS 285
           Y ERRY+ AD E+DEE EGE YLLGFSD +ASSE G  GN  EC IS
Sbjct: 433 YIERRYDRADIENDEEDEGEAYLLGFSDGEASSEEGFTGNTAECNIS 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547206|ref|XP_003542007.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/287 (71%), Positives = 236/287 (82%), Gaps = 2/287 (0%)

Query: 1   MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 60
           ++ + LN+IVID RNP YFA+GGSDEYARVYD+RKC W S  +SD PV+TFCPRHLIG N
Sbjct: 202 LSKVGLNSIVIDCRNPYYFAIGGSDEYARVYDMRKCQWDSARNSDRPVNTFCPRHLIGSN 261

Query: 61  NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 120
           N+HITGLAYS+  ELL+SYNDEL+YLFEKNM    SP S + ED +   E QVYSGHRN+
Sbjct: 262 NVHITGLAYSSFGELLVSYNDELIYLFEKNMHSDSSPSSATSEDSKNIHEAQVYSGHRNA 321

Query: 121 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT 180
           QT+KGVNFFGPNDEYV+SGSDCGH+FIWKKK  KLVRLMVGD+HVVNQ E HPHIP+ AT
Sbjct: 322 QTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQHEAHPHIPILAT 381

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240
           CGIEK VK+WAP+  D PPLP N ++IM+ N+QGRED S++TLTPDVIMHVLRLQRRQTL
Sbjct: 382 CGIEKNVKIWAPLGNDIPPLPGNVKEIMETNRQGREDRSQVTLTPDVIMHVLRLQRRQTL 441

Query: 241 AYRERRYNAADFESDEEEGETYLLGFSDSDASSEGG--GNQRECIIS 285
           AY ERR+N AD  SDEE+ E YLLGF D DASSE    GN R+C IS
Sbjct: 442 AYIERRHNRADIVSDEEDAEGYLLGFLDGDASSEEDYPGNSRDCNIS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453735|ref|XP_003597148.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355486196|gb|AES67399.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/284 (69%), Positives = 228/284 (80%), Gaps = 2/284 (0%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 63
           I LN+IVID R P YF+VGGSDEYARVYDIRKCHW +   SD PV+TFCP HLIG  N+H
Sbjct: 195 IGLNSIVIDSRIPYYFSVGGSDEYARVYDIRKCHWAASKDSDQPVNTFCPHHLIGSKNVH 254

Query: 64  ITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 123
           ITGLAYS +SELL+SYND+L+YLFEKN      P S + ED +  +E QVYSGHRN++TV
Sbjct: 255 ITGLAYSKSSELLVSYNDDLIYLFEKNSSFDSLPSSAACEDPKNLQETQVYSGHRNAKTV 314

Query: 124 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 183
           KGV+FFGPNDEYV+SGSDCGH+FIW KK  KLVRLMVGDRHVVNQLE HPHIP  ATCGI
Sbjct: 315 KGVSFFGPNDEYVLSGSDCGHIFIWSKKEAKLVRLMVGDRHVVNQLEAHPHIPFLATCGI 374

Query: 184 EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 243
           EK VK+WAP+ +D PPLP N ++I++AN+QGRED  ++TL PDVIMHVLRLQRRQTLAY 
Sbjct: 375 EKNVKIWAPLGSDTPPLPSNVKEIIEANRQGREDRLQVTLAPDVIMHVLRLQRRQTLAYT 434

Query: 244 ERRYNAADFESDEEEGETYLLGFSDSDASSEGG--GNQRECIIS 285
           ERR+N+AD  SD+E+ E Y LG  D D SSE    GN R+C IS
Sbjct: 435 ERRHNSADIVSDDEDAEDYFLGLLDGDVSSEEDSLGNSRDCNIS 478

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205238|gb|ABI34308.1| WD domain containing protein, putative [Solanum demissum]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/287 (69%), Positives = 231/287 (80%), Gaps = 9/287 (3%)

Query: 3   SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI 62
           SIRLN IVIDPRNPNYFAVGGSDEYARVYDIR     +  SSD  +DTFCP HLI  +++
Sbjct: 173 SIRLNGIVIDPRNPNYFAVGGSDEYARVYDIRMYQLDARTSSDRSIDTFCPHHLIKTHDV 232

Query: 63  HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 122
           HIT LAYSNTSELL+SYNDEL+YLF+KNMGLGP PLSL  EDL K E+PQVYSGHRNSQT
Sbjct: 233 HITALAYSNTSELLVSYNDELIYLFQKNMGLGPVPLSLQGEDLNKLEKPQVYSGHRNSQT 292

Query: 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 182
           VKGV+FFGP DEYV++GSDCGH+FIWKKK  KLVR+MVGDRH+VNQL+PHP IP+ ATCG
Sbjct: 293 VKGVSFFGPTDEYVLTGSDCGHIFIWKKKDAKLVRVMVGDRHIVNQLKPHPCIPVLATCG 352

Query: 183 IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY 242
           IEKT+KLWAP   D  PLP + ++IM+AN++GREDHSR+TLTPD+IMHVLRL RRQ LAY
Sbjct: 353 IEKTIKLWAPTSKDVTPLPPDVQEIMEANRRGREDHSRVTLTPDMIMHVLRLHRRQALAY 412

Query: 243 RERRYNAADFESDEEE----GETYLLGFSDSDASSEGGGNQRECIIS 285
            ERR N    +SD+++    G  Y+LGFSD +      G   EC IS
Sbjct: 413 IERRENLGYVDSDDDDDDIGGGAYVLGFSDGEE-----GENSECSIS 454

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815706|ref|XP_002875736.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321574|gb|EFH51995.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/286 (66%), Positives = 222/286 (77%), Gaps = 9/286 (3%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS----DTPVDTFCPRHLIGK 59
           IRLN+I IDPRN  Y AVGGSDEYARVYD R+    +P+      D PV+TFCPRHL   
Sbjct: 201 IRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRGQL-APVCRHVLPDAPVNTFCPRHLRET 259

Query: 60  NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 119
           N++H+TGLAYS   ELL+SYNDEL+YLFEKNMG GPSP+S+SPE LQ+ EEPQVY+GHRN
Sbjct: 260 NSVHVTGLAYSKAGELLVSYNDELIYLFEKNMGYGPSPVSISPEKLQEMEEPQVYTGHRN 319

Query: 120 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 179
           +QTVKGV FFGPNDEYV SGSDCGH+FIWKKKGGKLVR MVGDR VVNQLE HPHIP+ A
Sbjct: 320 AQTVKGVKFFGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLA 379

Query: 180 TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239
           +CGIEK+VKLW PM  D   LP+  EK+M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT
Sbjct: 380 SCGIEKSVKLWTPMSNDVFSLPEKIEKVMELNRVGREDQSRVTLTPDVIMHVLRLQRRQT 439

Query: 240 LAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS 285
            A+ ERRY + D  SD+     ++    D+D  S    ++REC +S
Sbjct: 440 SAFTERRYVSTDIGSDDGNDAHFIASLVDNDDES----SERECTVS 481

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231191|ref|NP_190148.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|6996265|emb|CAB75491.1| putative protein [Arabidopsis thaliana] gi|26450489|dbj|BAC42358.1| unknown protein [Arabidopsis thaliana] gi|28973383|gb|AAO64016.1| unknown protein [Arabidopsis thaliana] gi|332644530|gb|AEE78051.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/286 (66%), Positives = 219/286 (76%), Gaps = 9/286 (3%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS----DTPVDTFCPRHLIGK 59
           IRLN+I IDPRN  Y AVGGSDEYARVYD R+    +P+      D PV+TFCPRHL   
Sbjct: 201 IRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQ-LAPVCRHVLPDAPVNTFCPRHLRET 259

Query: 60  NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 119
           N++HITGLAYS   ELL+SYNDEL+YLFEKNMG G SP+S+SPE LQ+ EEPQVY GHRN
Sbjct: 260 NSVHITGLAYSKAGELLVSYNDELIYLFEKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRN 319

Query: 120 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 179
           +QTVKGVNFFGPNDEYV SGSDCGH+FIWKKKGGKLVR MVGDR VVNQLE HPHIP+ A
Sbjct: 320 AQTVKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLA 379

Query: 180 TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239
           +CGIEK+VKLW PM  D   LP+  +K+M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT
Sbjct: 380 SCGIEKSVKLWTPMSNDVLSLPEKIDKVMELNRVGREDQSRVTLTPDVIMHVLRLQRRQT 439

Query: 240 LAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS 285
            A+ ERRY + D  SDE     ++     +D  S    + REC +S
Sbjct: 440 SAFTERRYVSTDIGSDEGNDARFIASLVANDDES----SDRECTVS 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185746|ref|NP_001190014.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332644531|gb|AEE78052.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/286 (66%), Positives = 219/286 (76%), Gaps = 9/286 (3%)

Query: 4   IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS----DTPVDTFCPRHLIGK 59
           IRLN+I IDPRN  Y AVGGSDEYARVYD R+    +P+      D PV+TFCPRHL   
Sbjct: 235 IRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQL-APVCRHVLPDAPVNTFCPRHLRET 293

Query: 60  NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 119
           N++HITGLAYS   ELL+SYNDEL+YLFEKNMG G SP+S+SPE LQ+ EEPQVY GHRN
Sbjct: 294 NSVHITGLAYSKAGELLVSYNDELIYLFEKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRN 353

Query: 120 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 179
           +QTVKGVNFFGPNDEYV SGSDCGH+FIWKKKGGKLVR MVGDR VVNQLE HPHIP+ A
Sbjct: 354 AQTVKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLA 413

Query: 180 TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 239
           +CGIEK+VKLW PM  D   LP+  +K+M+ N+ GRED SR+TLTPDVIMHVLRLQRRQT
Sbjct: 414 SCGIEKSVKLWTPMSNDVLSLPEKIDKVMELNRVGREDQSRVTLTPDVIMHVLRLQRRQT 473

Query: 240 LAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQRECIIS 285
            A+ ERRY + D  SDE     ++     +D  S    + REC +S
Sbjct: 474 SAFTERRYVSTDIGSDEGNDARFIASLVANDDES----SDRECTVS 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463637|ref|XP_004149538.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus] gi|449532795|ref|XP_004173364.1| PREDICTED: DDB1- and CUL4-associated factor 8-like [Cucumis sativus]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/288 (65%), Positives = 225/288 (78%), Gaps = 5/288 (1%)

Query: 2   NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 61
           NSI LNAI IDPRNPN+FA+GGSDEYAR+YD+R C      SS+  VDTFCP HL   NN
Sbjct: 194 NSIELNAIAIDPRNPNFFALGGSDEYARLYDLRNCRG-DVTSSNRVVDTFCPHHLTQTNN 252

Query: 62  IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNS 120
            HITGL +SN+SELLI+Y+DEL+YLF+KNMGLGPSPL++S E+L +  + P V+SGHRNS
Sbjct: 253 FHITGLVFSNSSELLITYSDELIYLFQKNMGLGPSPLTVSSENLLRELKRPHVFSGHRNS 312

Query: 121 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT 180
            TVKGVNFFGPN EY++SGSDCGH++IWKKKG  LV+LM+GD  VVN +EPHPH+P+ AT
Sbjct: 313 ATVKGVNFFGPNAEYIVSGSDCGHIYIWKKKGALLVKLMLGDHDVVNHIEPHPHLPILAT 372

Query: 181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 240
           CGIE  VK+W PM +D PPLPD+ E+IM++NKQGRE+HSR+TLTPDVI+HVLRLQRRQT 
Sbjct: 373 CGIENNVKIWTPMASDVPPLPDDMEQIMESNKQGREEHSRVTLTPDVIVHVLRLQRRQTS 432

Query: 241 AYRERRYNAADFESD-EEEGETYLLGFSDSDASSEGGGNQR--ECIIS 285
           A+ ERRYN AD  SD E E E Y     D   S E    +   EC IS
Sbjct: 433 AFTERRYNPADNNSDGENEWEAYNQEALDGSVSFEDDSTEHASECNIS 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2132796	496	AT4G35140 "AT4G35140" [Arabido	0.978	0.562	0.447	1.2e-60
TAIR|locus:2121164	471	AT4G38480 "AT4G38480" [Arabido	0.698	0.422	0.543	6.6e-58
UNIPROTKB|Q5R448	597	DCAF8 "DDB1- and CUL4-associat	0.898	0.428	0.404	2.7e-45
MGI|MGI:91860	591	Dcaf8 "DDB1 and CUL4 associate	0.898	0.433	0.407	5.6e-45
RGD|1308513	591	Dcaf8 "DDB1 and CUL4 associate	0.898	0.433	0.404	2.4e-44
UNIPROTKB|Q5TAQ9	597	DCAF8 "DDB1- and CUL4-associat	0.898	0.428	0.397	3.1e-44
UNIPROTKB|G3V3G9	751	DCAF8 "DDB1- and CUL4-associat	0.898	0.340	0.397	1.1e-43
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.473	0.166	0.385	7.5e-29
UNIPROTKB|F1MBJ1	877	DCAF6 "Uncharacterized protein	0.477	0.155	0.402	2e-28
MGI|MGI:1921356	876	Dcaf6 "DDB1 and CUL4 associate	0.382	0.124	0.424	2.6e-28

TAIR|locus:2132796 AT4G35140 "AT4G35140" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 136/304 (44%), Positives = 183/304 (60%)

Query:     1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 60
             M++I+LNAI IDPRN N FAVGG +EYAR+YDIR+             D FCP HLIG  
Sbjct:   199 MDAIQLNAIAIDPRNSNLFAVGGMEEYARLYDIRRFQGEGLNGFTRAADHFCPPHLIGNE 258

Query:    61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPL---------------SLSPEDL 105
             ++ ITGLA+S  SELL+SYNDE +YLF   MGLG +P+               S SP+D 
Sbjct:   259 DVGITGLAFSEQSELLVSYNDEFIYLFTPGMGLGSNPIPSSPISKSPVSKSESSSSPKDE 318

Query:   106 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 165
              +     VY GH+N +TVKGVNFFGP  EYV+SGSDCG +FIW+KKGG+L+R+M  DRHV
Sbjct:   319 NEHSVSLVYKGHKNCETVKGVNFFGPRSEYVVSGSDCGRIFIWRKKGGELIRVMEADRHV 378

Query:   166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP 225
             VN +EPHPHIP+ A+ GIE  +K+W     +   LP+N E + K   +G     R++   
Sbjct:   379 VNCIEPHPHIPVLASSGIESDIKVWTSKAAERATLPENIE-LRKRTPRGWM--YRVSSPH 435

Query:   226 DVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSD-SD---ASSEGGGNQRE 281
             +++  +  LQ R + +  ER   ++   +   E    +L F+D SD   A+ +  GN  E
Sbjct:   436 ELLAQLFSLQNRSSSS-PEREGESSS--ATGRELLDLILTFNDQSDDENATDDDDGNSHE 492

Query:   282 CIIS 285
                S
Sbjct:   493 DFFS 496

GO:0000166 "nucleotide binding" evidence=ISS

TAIR|locus:2121164 AT4G38480 "AT4G38480" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 112/206 (54%), Positives = 145/206 (70%)

Query:     4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH---WYSPISSDTPVDTFCPRHLIGKN 60
             + L+AI +DPRNP   AV G DEYARVYDIR      WY+      P+D FCP HLIG +
Sbjct:   194 VYLHAIAVDPRNPGLLAVAGMDEYARVYDIRSYRSEGWYN---FTQPIDHFCPGHLIGDD 250

Query:    61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 120
             ++ ITGLA+S+ SELL SY+DE +YLF  +MGLGP+P   S +  ++R  PQVY  H N 
Sbjct:   251 HVGITGLAFSDQSELLASYSDEFIYLFTPDMGLGPTPYPSSTKT-EERMTPQVYKEHTNR 309

Query:   121 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT 180
             +TVKGVNFFGP  EYV+SGSDCG +FIW+KK G+L+R M  DRHVVN +E HPH+P+  +
Sbjct:   310 ETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKDGELLRAMEADRHVVNCIESHPHMPLMCS 369

Query:   181 CGIEKTVKLWAPMPTDFPPLPDNAEK 206
              GI+  +K+W P  T+ P  P NA++
Sbjct:   370 SGIDTDIKIWTPGGTEKPLSPGNAKQ 395

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q5R448 DCAF8 "DDB1- and CUL4-associated factor 8" [Pongo abelii (taxid:9601)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 118/292 (40%), Positives = 165/292 (56%)

Query:     4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNI 62
             + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+ G++  
Sbjct:   332 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHLVNGESKA 388

Query:    63 HITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
             +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct:   389 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----YKGHRNNA 435

Query:   122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFAT 180
             TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct:   436 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 495

Query:   181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----VIMHVLRL 234
              G++  VK+WAP       L    + ++K NK+ R++ S  R  L        +MH LR 
Sbjct:   496 SGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHRTDLFDSHMLWFLMHHLR- 553

Query:   235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 285
             QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   554 QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 597

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

MGI|MGI:91860 Dcaf8 "DDB1 and CUL4 associated factor 8" [Mus musculus (taxid:10090)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 119/292 (40%), Positives = 164/292 (56%)

Query:     4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNI 62
             + L  I ++P N + FAVGG D+Y R+YD RK        ++  +  FCP HL+  ++  
Sbjct:   326 VGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI---DENENNGVLKKFCPHHLVNSESKA 382

Query:    63 HITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
             +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct:   383 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----YKGHRNNA 429

Query:   122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFAT 180
             TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct:   430 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 489

Query:   181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPD-----VIMHVLRL 234
              G++  VK+WAP       L    ++++K NK+ R ED    T   D      +MH LR 
Sbjct:   490 SGLDHDVKIWAPTAEASTELT-GLKEVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLR- 547

Query:   235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 285
             QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   548 QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 591

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

RGD|1308513 Dcaf8 "DDB1 and CUL4 associated factor 8" [Rattus norvegicus (taxid:10116)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 118/292 (40%), Positives = 163/292 (55%)

Query:     4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNI 62
             + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+  ++  
Sbjct:   326 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHLVNSESKA 382

Query:    63 HITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
             +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct:   383 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYI--------KR-----YKGHRNNA 429

Query:   122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFAT 180
             TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct:   430 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 489

Query:   181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPD-----VIMHVLRL 234
              G++  VK+WAP       L    + ++K NK+ R ED    T   D      +MH LR 
Sbjct:   490 SGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHHTDLFDSHMLWFLMHHLR- 547

Query:   235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 285
             QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   548 QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 591

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO;ISS

UNIPROTKB|Q5TAQ9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 116/292 (39%), Positives = 164/292 (56%)

Query:     4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNI 62
             + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+  ++  
Sbjct:   332 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHLVNSESKA 388

Query:    63 HITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
             +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct:   389 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----YKGHRNNA 435

Query:   122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFAT 180
             TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct:   436 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 495

Query:   181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----VIMHVLRL 234
              G++  VK+WAP       L    + ++K NK+ R++ S  +  L        +MH LR 
Sbjct:   496 SGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHQTDLFDSHMLWFLMHHLR- 553

Query:   235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 285
             QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   554 QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 597

GO:0016567 "protein ubiquitination" evidence=IEA;IC

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G3V3G9 DCAF8 "DDB1- and CUL4-associated factor 8" [Homo sapiens (taxid:9606)]

 Score = 466 (169.1 bits), Expect = 1.1e-43, P = 1.1e-43
 Identities = 116/292 (39%), Positives = 164/292 (56%)

Query:     4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNI 62
             + L  I ++P N + FAVGG D++ R+YD RK        ++  +  FCP HL+  ++  
Sbjct:   486 VGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI---DENENNGVLKKFCPHHLVNSESKA 542

Query:    63 HITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
             +IT L YS+  +ELL SYNDE +YLF  +   G   +        KR     Y GHRN+ 
Sbjct:   543 NITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYV--------KR-----YKGHRNNA 589

Query:   122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPHPHIPMFAT 180
             TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPHPH+P+ AT
Sbjct:   590 TVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLAT 649

Query:   181 CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHS--RITLTPD----VIMHVLRL 234
              G++  VK+WAP       L    + ++K NK+ R++ S  +  L        +MH LR 
Sbjct:   650 SGLDHDVKIWAPTAEASTELT-GLKDVIKKNKRERDEDSLHQTDLFDSHMLWFLMHHLR- 707

Query:   235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR-ECIIS 285
             QRR    +RE    A D +SDE          S SD S E  G  R +C+ S
Sbjct:   708 QRRHHRRWREPGVGATDADSDESP--------SSSDTSDEEEGPDRVQCMPS 751

GO:0005777 "peroxisome" evidence=IEA

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 237 (88.5 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
 Identities = 59/153 (38%), Positives = 83/153 (54%)

Query:    94 GPSPLSLSPEDLQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 145
             GP+ LSL  +  +K  EP V        Y GH N +++K VNF+G NDEYVMSGSD G  
Sbjct:   637 GPTLLSLRMKK-RKAVEPNVPVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRF 695

Query:   146 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL----- 200
             FIW K    ++ ++ GD   VN +E HP  P  A  GI+ TVK++    T  PP      
Sbjct:   696 FIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVKIFNTENT--PPSGCSRN 753

Query:   201 -PDNAEKIMKANKQGREDHSRIT-LTPDVIMHV 231
                N+ KI+  N+  R+  SR + +T  ++ H+
Sbjct:   754 HTSNSYKIIATNEMNRQQGSRDSYITSRMLSHL 786

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1MBJ1 DCAF6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 60/149 (40%), Positives = 86/149 (57%)

Query:   113 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 171
             VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct:   729 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 786

Query:   172 HPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT-PDVIMH 230
             HP  P+ A+ GI+  +K+W+P+          A++++  N+   E+ +R T+T P   M 
Sbjct:   787 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE-TRNTITVPASFM- 844

Query:   231 VLRLQRRQTLAYRERRYNAADFESDEEEG 259
              LR+     LA       A   ESD  EG
Sbjct:   845 -LRM-----LASLNH-IRADRLESDRSEG 866

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1921356 Dcaf6 "DDB1 and CUL4 associated factor 6" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 48/113 (42%), Positives = 73/113 (64%)

Query:   113 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 171
             VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+P
Sbjct:   728 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQP 785

Query:   172 HPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 224
             HP  P+ A+ GI+  +K+W+P+          A++++  N+   E+ +R T+T
Sbjct:   786 HPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEE-TRNTIT 837

GO:0005634 "nucleus" evidence=ISO

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024466001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (479 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028385001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1089 aa)					•		•		0.436

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 35/175 (20%)

Query: 17  NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 76
            Y A G SD+  R++D+                  C R L G  + +++ +A+S    +L
Sbjct: 64  TYLASGSSDKTIRLWDLETGE--------------CVRTLTGHTS-YVSSVAFSPDGRIL 108

Query: 77  I-SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135
             S  D+ + ++                D++  +      GH +   V  V  F P+  +
Sbjct: 109 SSSSRDKTIKVW----------------DVETGKCLTTLRGHTDW--VNSV-AFSPDGTF 149

Query: 136 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 190
           V S S  G + +W  + GK V  + G    VN +   P      +   + T+KLW
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 48/192 (25%)

Query: 7   NAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-- 63
           N++   P     F    S D   +++D+R             V T            H  
Sbjct: 139 NSVAFSP--DGTFVASSSQDGTIKLWDLRTGK---------CVATL---------TGHTG 178

Query: 64  -ITGLAYSNT-SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 121
            +  +A+S    +LL S +D  + L+                DL   +      GH N  
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLW----------------DLSTGKCLGTLRGHEN-- 220

Query: 122 TVKGVNF--FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 179
              GVN   F P+   + SGS+ G + +W  + G+ V+ + G  + V  L   P     A
Sbjct: 221 ---GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 180 TCGIEKTVKLWA 191
           +   + T+++W 
Sbjct: 278 SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 20/128 (15%)

Query: 64  ITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 122
           +T +A+S   +LL +   D  + ++                DL+  E  +   GH  +  
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVW----------------DLETGELLRTLKGH--TGP 53

Query: 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 182
           V+ V     +  Y+ SGS    + +W  + G+ VR + G    V+ +   P   + ++  
Sbjct: 54  VRDVAAS-ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 183 IEKTVKLW 190
            +KT+K+W
Sbjct: 113 RDKTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 33/176 (18%)

Query: 15  NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 74
           +    A G  D   +V+D         + +   + T    H     ++     A ++ + 
Sbjct: 20  DGKLLATGSGDGTIKVWD---------LETGELLRTLKG-HTGPVRDV----AASADGTY 65

Query: 75  LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 134
           L    +D+ + L+                DL+  E  +  +GH  +  V  V F  P+  
Sbjct: 66  LASGSSDKTIRLW----------------DLETGECVRTLTGH--TSYVSSVAFS-PDGR 106

Query: 135 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 190
            + S S    + +W  + GK +  + G    VN +   P     A+   + T+KLW
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 8e-06
 Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 2   NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN 61
           +S  + ++   P +    A G SD   R++D+      S ++                + 
Sbjct: 283 HSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-------------HE 328

Query: 62  IHITGLAYSNTSELLIS--YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 119
             ++ L++S    LL+S   +D  + L+                DL+  +  +   GH N
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLW----------------DLRTGKPLKTLEGHSN 372

Query: 120 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 179
             +V     F P+   V SGS  G + +W    G L+R + G    V  L+  P     A
Sbjct: 373 VLSVS----FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 180 TCGIEKTVKLW 190
           +   + T++LW
Sbjct: 429 SGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 37/189 (19%)

Query: 5   RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 64
            + ++   P      +    D   +++D+R     S ++  T                 +
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP---------------V 201

Query: 65  TGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 122
           + LA+S    LLI+   +D  + L++ + G               +      SGH +S  
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTG---------------KLLRSTLSGHSDSV- 245

Query: 123 VKGVNFFGPNDEYVMSGSDCGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC 181
              V+ F P+   + SGS  G + +W  +    L+R + G    V  +   P   + A+ 
Sbjct: 246 ---VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 182 GIEKTVKLW 190
             + TV+LW
Sbjct: 303 SSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 47/277 (16%), Positives = 92/277 (33%), Gaps = 45/277 (16%)

Query: 5   RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI 64
            + +I   P        G SD   +++D+                    + L G ++  +
Sbjct: 67  SITSIAFSPDG-ELLLSGSSDGTIKLWDLDN-------------GEKLIKSLEGLHDSSV 112

Query: 65  TGLAYSNTSE----LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 120
           + LA S+       L  S  D  V L++ +                  +  +   GH  S
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLS---------------TPGKLIRTLEGH--S 155

Query: 121 QTVKGVNFFGPNDEYVMSGSDC-GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-MF 178
           ++V  + F  P+ + + SGS   G + +W  + GK +  + G    V+ L   P    + 
Sbjct: 156 ESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214

Query: 179 ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL---- 234
           A+   + T++LW            +       +    +     + + D  + +  L    
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274

Query: 235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA 271
              +TL+       +  F  D   G+    G SD   
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPD---GKLLASGSSDGTV 308

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
PTZ00421	493	coronin; Provisional	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0296	399	consensus Angio-associated migratory cell protein	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1334	559	consensus WD40 repeat protein [General function pr	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.82
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.79
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
KOG2096	420	consensus WD40 repeat protein [General function pr	99.77
KOG2048	691	consensus WD40 repeat protein [General function pr	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.76
KOG4328	498	consensus WD40 protein [Function unknown]	99.76
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.71
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG1273	405	consensus WD40 repeat protein [General function pr	99.66
COG2319	466	FOG: WD40 repeat [General function prediction only	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
KOG4227	609	consensus WD40 repeat protein [General function pr	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
PRK11028	330	6-phosphogluconolactonase; Provisional	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.57
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.57
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG0649	325	consensus WD40 repeat protein [General function pr	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.54
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.5
KOG1963	792	consensus WD40 repeat protein [General function pr	99.5
PRK05137	435	tolB translocation protein TolB; Provisional	99.49
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.49
PRK11028	330	6-phosphogluconolactonase; Provisional	99.49
KOG4547	541	consensus WD40 repeat-containing protein [General	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.48
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.48
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG1963	792	consensus WD40 repeat protein [General function pr	99.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.44
PRK02889	427	tolB translocation protein TolB; Provisional	99.43
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.42
PRK01742	429	tolB translocation protein TolB; Provisional	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.4
PRK04922	433	tolB translocation protein TolB; Provisional	99.37
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.32
KOG1334	559	consensus WD40 repeat protein [General function pr	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.27
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.25
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.23
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.21
PRK00178	430	tolB translocation protein TolB; Provisional	99.21
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.21
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.2
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.17
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.15
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
PRK01029	428	tolB translocation protein TolB; Provisional	99.12
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.11
PRK04792	448	tolB translocation protein TolB; Provisional	99.07
KOG2315	566	consensus Predicted translation initiation factor	99.06
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.06
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.03
KOG2695	425	consensus WD40 repeat protein [General function pr	99.02
KOG2695	425	consensus WD40 repeat protein [General function pr	99.01
COG4946	668	Uncharacterized protein related to the periplasmic	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.95
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.92
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.9
KOG2315	566	consensus Predicted translation initiation factor	98.89
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.87
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.83
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.8
COG4946	668	Uncharacterized protein related to the periplasmic	98.8
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.79
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.76
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.74
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.73
PRK04043	419	tolB translocation protein TolB; Provisional	98.71
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.7
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.69
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.67
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.65
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.64
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.63
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.58
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.57
KOG2314	698	consensus Translation initiation factor 3, subunit	98.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.52
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.51
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.47
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.44
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.41
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.36
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.34
KOG3621	726	consensus WD40 repeat-containing protein [General	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.32
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.29
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.28
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG2314	698	consensus Translation initiation factor 3, subunit	98.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.23
KOG3621	726	consensus WD40 repeat-containing protein [General	98.21
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.17
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.11
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.02
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.95
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.84
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.82
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.81
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.79
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.78
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
PRK02888	635	nitrous-oxide reductase; Validated	97.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.64
PRK02888	635	nitrous-oxide reductase; Validated	97.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.51
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.49
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.46
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.44
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.44
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.44
COG3391	381	Uncharacterized conserved protein [Function unknow	97.41
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.35
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.31
KOG2444	238	consensus WD40 repeat protein [General function pr	97.29
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.27
PRK13616	591	lipoprotein LpqB; Provisional	97.22
PHA02713	557	hypothetical protein; Provisional	97.22
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.21
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.12
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.09
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.01
COG3391	381	Uncharacterized conserved protein [Function unknow	96.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.87
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.83
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.8
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.71
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.67
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.66
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.61
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.52
PHA03098	534	kelch-like protein; Provisional	96.44
PHA02713	557	hypothetical protein; Provisional	96.42
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.41
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.34
PRK13616	591	lipoprotein LpqB; Provisional	96.31
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.2
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.16
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.0
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.95
KOG2444	238	consensus WD40 repeat protein [General function pr	95.78
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.71
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.61
PHA02790	480	Kelch-like protein; Provisional	95.33
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.2
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.19
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.14
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.11
KOG2395	644	consensus Protein involved in vacuole import and d	95.09
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.98
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.87
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.86
KOG2247	615	consensus WD40 repeat-containing protein [General	94.72
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.51
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.48
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.32
PRK13684	334	Ycf48-like protein; Provisional	94.2
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.16
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.03
PHA03098	534	kelch-like protein; Provisional	94.0
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.87
COG5167	776	VID27 Protein involved in vacuole import and degra	93.43
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.41
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.29
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.18
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.1
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.87
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.76
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.76
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.03
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.75
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.7
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.68
PHA02790	480	Kelch-like protein; Provisional	91.35
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.28
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.03
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.83
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.42
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.94
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.93
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.92
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.44
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.19
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.14
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.52
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.41
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.35
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.73
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.61
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.37
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.72
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	86.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.43
PRK13684	334	Ycf48-like protein; Provisional	86.33
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.2
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.1
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.89
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.74
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	85.38
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.65
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.58
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.89
COG5276	370	Uncharacterized conserved protein [Function unknow	82.08
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.04
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	81.83
COG5167	776	VID27 Protein involved in vacuole import and degra	81.33
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.88
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	80.31

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.1e-42  Score=259.14  Aligned_cols=236  Identities=19%  Similarity=0.327  Sum_probs=199.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..+|.|++|+|++ ..|++|+.|.++|+||+.+..               +....++|...|.|++|+|||+.||+|. |
T Consensus       115 ~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT---------------p~~t~KgH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  115 GEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET---------------PLFTCKGHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             CCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC---------------cceeecCCccEEEEEEECCCcchhhccccC
Confidence            4689999999975 899999999999999999874               3333389999999999999999999976 9


Q ss_pred             CcEEEEEcCCCC--------------------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEe
Q 023246           82 ELVYLFEKNMGL--------------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  129 (285)
Q Consensus        82 ~~i~iwd~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  129 (285)
                      |.|++||..++.                                ++....+.+++.....++..+.+|+.+  |+|+.| 
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrw-  255 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRW-  255 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEE-
Confidence            999999987775                                222344555666666788888999987  999995 


Q ss_pred             cCCCcEEEEecCCCeEEEEecCCCceEE----------------------------------------------------
Q 023246          130 GPNDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------------  157 (285)
Q Consensus       130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~----------------------------------------------------  157 (285)
                      .- ..++++|+.|++|++|+...|.+.+                                                    
T Consensus       256 GG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~  334 (480)
T KOG0271|consen  256 GG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD  334 (480)
T ss_pred             cC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence            43 3488999999999999876654322                                                    


Q ss_pred             ---------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCccccee
Q 023246          158 ---------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK  209 (285)
Q Consensus       158 ---------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~  209 (285)
                                                 .+.+|+..|+.+.|+||++++|+++.|+.|++|+-++++ +..+.+|...++.
T Consensus       335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq  414 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ  414 (480)
T ss_pred             CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence                                       345778889999999999999999999999999999887 5789999999999


Q ss_pred             eccccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          210 ANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      +.| +.+.++++++|.|.+++||++++++.         ..+|+.++|+  ||.++++.+-
T Consensus       415 vaw-saDsRLlVS~SkDsTLKvw~V~tkKl---------~~DLpGh~DE--Vf~vDwspDG  463 (480)
T KOG0271|consen  415 VAW-SADSRLLVSGSKDSTLKVWDVRTKKL---------KQDLPGHADE--VFAVDWSPDG  463 (480)
T ss_pred             EEe-ccCccEEEEcCCCceEEEEEeeeeee---------cccCCCCCce--EEEEEecCCC
Confidence            987 77889999999999999999999877         5789999999  9999987543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8e-38  Score=240.22  Aligned_cols=223  Identities=16%  Similarity=0.248  Sum_probs=193.8

Q ss_pred             ccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            3 SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ...|.++.|+|. +...+|||+.||++++|++....              .+..+ .+|...|..++|+|+|++|++++ 
T Consensus       217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--------------~l~~l-~gH~~RVs~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--------------PLQDL-EGHLARVSRVAFHPSGKFLGTASF  281 (459)
T ss_pred             ccceeeEEEccCCCccceeeeccCCceeeeccCCCc--------------chhhh-hcchhhheeeeecCCCceeeeccc
Confidence            567899999997 45799999999999999998654              22222 89999999999999999999976 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |.+-++||+.++                ..+....+|...  |.+++| .++|.++++|+.|..-+|||+++|.++..+.
T Consensus       282 D~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf-~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~  342 (459)
T KOG0272|consen  282 DSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF-QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA  342 (459)
T ss_pred             ccchhhcccccc----------------hhhHhhcccccc--cceeEe-cCCCceeeccCccchhheeecccCcEEEEec
Confidence            999999999988                677777899866  999998 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      +|..+|.+|+|+|+|..++||+.|++++|||++... +.+++.|...+..+......+.++++++.|+++++|.-.+.+.
T Consensus       343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence            999999999999999999999999999999998775 5778888888766655445677999999999999999888766


Q ss_pred             ceeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          240 LAYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      +         ..+++|++.  |+.++.+.+.
T Consensus       423 ~---------ksLaGHe~k--V~s~Dis~d~  442 (459)
T KOG0272|consen  423 L---------KSLAGHEGK--VISLDISPDS  442 (459)
T ss_pred             c---------hhhcCCccc--eEEEEeccCC
Confidence            4         567777776  7777766544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-36  Score=248.71  Aligned_cols=202  Identities=17%  Similarity=0.297  Sum_probs=182.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.++|..++|+|++ ++|++++.|+++|+|.+.+..              +.... .+|..+|+.+.|+|-|.+||+++ 
T Consensus       450 H~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             CCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence            35899999999986 999999999999999999886              33333 79999999999999999999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |++.++|.....                .+.+.|.+|-+.  +.|+.| +|+..|+++|+.|.+|++||..+|..++.|.
T Consensus       514 D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~  574 (707)
T KOG0263|consen  514 DQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVRIFT  574 (707)
T ss_pred             CceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence            999999999887                788999999988  999998 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      +|.++|.+++|+|+|++|++|+.|+.|++||+.++. +.++.+|.+.+.++.. +.++..+++++.|.+|++||+.....
T Consensus       575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsF-S~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSF-SRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEE-ecCCCEEEecCCCCeEEEEEchhhcc
Confidence            999999999999999999999999999999998876 5788889666655544 67888999999999999999876543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-36  Score=231.74  Aligned_cols=205  Identities=16%  Similarity=0.208  Sum_probs=184.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEec
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~   80 (285)
                      ..||..+.|++++ ..|+||+.+|.+++|+.....              .... +.+|...|.++.|+|.  +.-+|+++
T Consensus       175 ~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~--------------~~~~-l~gH~~~v~~~~fhP~~~~~~lat~s  238 (459)
T KOG0272|consen  175 TRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCN--------------LLQT-LRGHTSRVGAAVFHPVDSDLNLATAS  238 (459)
T ss_pred             CCcceeeEeecCC-CeEEEeecCCceeEeecCCcc--------------eeEE-EeccccceeeEEEccCCCccceeeec
Confidence            3589999999985 999999999999999998775              2222 3899999999999997  45788865


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                       ||++++|++.+.                .++..+.+|...  |..++| +|+|++|+|++.|.+-++||+++++.+...
T Consensus       239 ~Dgtvklw~~~~e----------------~~l~~l~gH~~R--Vs~Vaf-HPsG~~L~TasfD~tWRlWD~~tk~ElL~Q  299 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE----------------TPLQDLEGHLAR--VSRVAF-HPSGKFLGTASFDSTWRLWDLETKSELLLQ  299 (459)
T ss_pred             cCCceeeeccCCC----------------cchhhhhcchhh--heeeee-cCCCceeeecccccchhhcccccchhhHhh
Confidence             999999999987                688999999976  999998 999999999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .+|...|.+++|.|+|..++||+.|..-++||++++. +..+.+|..+++.++| ++++..+++|+.|++++|||++..+
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF-SPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE-CCCceEEeecCCCCcEEEeeecccc
Confidence            9999999999999999999999999999999999886 5778889999999877 6677789999999999999999887


Q ss_pred             cceeE
Q 023246          239 TLAYR  243 (285)
Q Consensus       239 ~~~~~  243 (285)
                      .+..+
T Consensus       379 ~ly~i  383 (459)
T KOG0272|consen  379 ELYTI  383 (459)
T ss_pred             cceec
Confidence            76655

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-35  Score=225.74  Aligned_cols=212  Identities=18%  Similarity=0.320  Sum_probs=166.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCCEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLI   77 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~   77 (285)
                      +.-|.|++|+||+ ..||+|+.||+|++||..+++.              .-..+.+|...|++++|.|     ..++||
T Consensus       157 ~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~--------------~g~~l~gH~K~It~Lawep~hl~p~~r~la  221 (480)
T KOG0271|consen  157 KNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQ--------------IGRALRGHKKWITALAWEPLHLVPPCRRLA  221 (480)
T ss_pred             ccEEEEEEECCCc-chhhccccCCeEEEecCCCCCc--------------ccccccCcccceeEEeecccccCCCcccee
Confidence            4578999999986 8999999999999999999873              2223356666666666654     234555


Q ss_pred             Eec-CCcEEEEEcCCCC-------------------------CCCCCCCCCcc---------------------------
Q 023246           78 SYN-DELVYLFEKNMGL-------------------------GPSPLSLSPED---------------------------  104 (285)
Q Consensus        78 s~~-d~~i~iwd~~~~~-------------------------~~~~~~~~~~~---------------------------  104 (285)
                      +++ ||.|+|||+..+.                         ++...+++.+.                           
T Consensus       222 s~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~  301 (480)
T KOG0271|consen  222 SSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV  301 (480)
T ss_pred             cccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh
Confidence            543 6666666665432                         00000000000                           


Q ss_pred             ----------------------------------------------------ccCCCCceEeecccCceeeeeEEEecCC
Q 023246          105 ----------------------------------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPN  132 (285)
Q Consensus       105 ----------------------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (285)
                                                                          ....+++..+.+|...  |+.+.| +|+
T Consensus       302 LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l--Vn~V~f-SPd  378 (480)
T KOG0271|consen  302 LRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL--VNHVSF-SPD  378 (480)
T ss_pred             hhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh--eeeEEE-CCC
Confidence                                                                2222345566788866  999998 999


Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeec
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN  211 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~  211 (285)
                      ++++++++.|..|++||.++|+.+.+|.+|-+.|+.++|+.|.++|++|+.|.++++|++++.++ ..+++|...++...
T Consensus       379 ~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD  458 (480)
T KOG0271|consen  379 GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD  458 (480)
T ss_pred             ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999986 67999999999998


Q ss_pred             cccCCCceEEEeCCCCeEEEEE
Q 023246          212 KQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      | ++++..++++..|..+++|.
T Consensus       459 w-spDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  459 W-SPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             e-cCCCceeecCCCceEEEeec
Confidence            7 66777899999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-34  Score=208.21  Aligned_cols=206  Identities=15%  Similarity=0.196  Sum_probs=173.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|+.+..++++ +++++++.|+++++||+.+++              ....+ .+|...|.+++|+++.+.+++|+ |
T Consensus        63 sH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~--------------~t~~f-~GH~~dVlsva~s~dn~qivSGSrD  126 (315)
T KOG0279|consen   63 SHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE--------------STRRF-VGHTKDVLSVAFSTDNRQIVSGSRD  126 (315)
T ss_pred             ceEecceEEccCC-ceEEeccccceEEEEEecCCc--------------EEEEE-EecCCceEEEEecCCCceeecCCCc
Confidence            4568899999986 999999999999999999986              33333 79999999999999999999986 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .+|++|++...                 +..++..+.....|.++.| +|+  ..+|++++.|++|++||+++.+....+
T Consensus       127 kTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf-sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~  188 (315)
T KOG0279|consen  127 KTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF-SPNESNPIIVSASWDKTVKVWNLRNCQLRTTF  188 (315)
T ss_pred             ceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE-cCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence            99999999875                 4444444421244999998 887  789999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      .+|++.++.++++|||..+++|+.||.+.+||++.++.....++...+..+  ++.+.++.++...+..|+|||+..+..
T Consensus       189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl--~fspnrywL~~at~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL--CFSPNRYWLCAATATSIKIWDLESKAV  266 (315)
T ss_pred             ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE--EecCCceeEeeccCCceEEEeccchhh
Confidence            999999999999999999999999999999999988765555566666555  455667778888888899999999877


Q ss_pred             ceeEe
Q 023246          240 LAYRE  244 (285)
Q Consensus       240 ~~~~~  244 (285)
                      +..+.
T Consensus       267 v~~l~  271 (315)
T KOG0279|consen  267 VEELK  271 (315)
T ss_pred             hhhcc
Confidence            65553

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-33  Score=204.49  Aligned_cols=236  Identities=16%  Similarity=0.236  Sum_probs=192.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.+.|+.++..+.++.++++++.|.++.+|++....    .+...+++.      +.+|...|..+..+++|++.++++ 
T Consensus        14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----~~~G~~~r~------~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen   14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----IKYGVPVRR------LTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             CCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----cccCceeee------eeccceEecceEEccCCceEEeccc
Confidence            356899999999888999999999999999998653    122223332      388999999999999999999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |+++++||+.++                +..+.|.+|...  |.+++| +++.+.+++|+.|.+|++|+.. +.+..++.
T Consensus        84 D~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t~~  143 (315)
T KOG0279|consen   84 DGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYTIH  143 (315)
T ss_pred             cceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence            999999999998                788999999977  999998 9999999999999999999987 66776766


Q ss_pred             cc--cccceEeEEcCC--CCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          161 GD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       161 ~h--~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .+  +..|.++.|+|+  ..++++++.|++|++||+++.++ ..+.+|...+... ..++++.+.++|..||.+.+||++
T Consensus       144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~-~vSpDGslcasGgkdg~~~LwdL~  222 (315)
T KOG0279|consen  144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV-TVSPDGSLCASGGKDGEAMLWDLN  222 (315)
T ss_pred             cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE-EECCCCCEEecCCCCceEEEEEcc
Confidence            44  789999999998  67899999999999999999886 4566666655444 457788899999999999999999


Q ss_pred             ccccceeE---------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          236 RRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       236 ~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .++.+..+         .++|+...+...-++ .|-+++.+.+
T Consensus       223 ~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~  264 (315)
T KOG0279|consen  223 EGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK  264 (315)
T ss_pred             CCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence            98776665         355555555443332 2666666654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-33  Score=218.05  Aligned_cols=218  Identities=17%  Similarity=0.257  Sum_probs=184.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      +..|++++|+.+| .+||+|+.||.++||+.....               ... +..|.++|.++.|+..|.+|++++ |
T Consensus       235 nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~t-l~~HkgPI~slKWnk~G~yilS~~vD  297 (524)
T KOG0273|consen  235 NKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------IST-LGQHKGPIFSLKWNKKGTYILSGGVD  297 (524)
T ss_pred             cCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhh-hhccCCceEEEEEcCCCCEEEeccCC
Confidence            5689999999986 999999999999999987542               222 278999999999999999999965 9


Q ss_pred             CcEEEEEcCCCC-------------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           82 ELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        82 ~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      +++.+||..++.                         +.....+....+....++.++.+|.++  |.++.| +|.+.+|
T Consensus       298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~LL  374 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSLL  374 (524)
T ss_pred             ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCceE
Confidence            999999997664                         111112223335555678899999988  999997 9999999


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCC---------CeEEEEecCCcEEEEcCCCCC-CCCCCCCccc
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---------PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  206 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~---------~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~  206 (285)
                      +++++|+++++|.+......+.+.+|...|..+.|+|++         ..+++++.|++|++||+..+. +..+..|..+
T Consensus       375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p  454 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP  454 (524)
T ss_pred             EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence            999999999999999999999999999999999999975         369999999999999997665 6888889999


Q ss_pred             ceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          207 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       207 ~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      ++.+.. +++++++++|+.||.|++|+.+.++..+
T Consensus       455 Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  455 VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             eEEEEe-cCCCcEEEecCCCCeeEeccccchheeE
Confidence            988865 6778899999999999999999886654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-32  Score=200.54  Aligned_cols=215  Identities=15%  Similarity=0.170  Sum_probs=180.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      .++|.++.|++|. +++++++.||.+.|||..+...              ...+ .-....|..++|+|.|+++|+|. |
T Consensus        55 ~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK--------------~hai-pl~s~WVMtCA~sPSg~~VAcGGLd  118 (343)
T KOG0286|consen   55 LNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNK--------------VHAI-PLPSSWVMTCAYSPSGNFVACGGLD  118 (343)
T ss_pred             ccceeeeEecCCc-CeEEeeccCCeEEEEEcccccc--------------eeEE-ecCceeEEEEEECCCCCeEEecCcC
Confidence            4689999999985 9999999999999999987652              2222 33456899999999999999965 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +...||++.+...          ....+..+.+.+|+.-  +.++.| - +...|++++.|.+..+||+++++.+..+.+
T Consensus       119 N~Csiy~ls~~d~----------~g~~~v~r~l~gHtgy--lScC~f-~-dD~~ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  119 NKCSIYPLSTRDA----------EGNVRVSRELAGHTGY--LSCCRF-L-DDNHILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             ceeEEEecccccc----------cccceeeeeecCccce--eEEEEE-c-CCCceEecCCCceEEEEEcccceEEEEecC
Confidence            9999999985410          1112355678899965  999998 3 477899999999999999999999999999


Q ss_pred             ccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          162 DRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       162 h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      |.+.|.+++++| +++.+++|+-|+..++||++.+. .++|.+|...+..+.. .+.+..+++|+.|++.++||++..+.
T Consensus       185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f-fP~G~afatGSDD~tcRlyDlRaD~~  263 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF-FPSGDAFATGSDDATCRLYDLRADQE  263 (343)
T ss_pred             CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE-ccCCCeeeecCCCceeEEEeecCCcE
Confidence            999999999999 89999999999999999998775 6889999998877754 56667899999999999999999888


Q ss_pred             ceeEeeecc
Q 023246          240 LAYRERRYN  248 (285)
Q Consensus       240 ~~~~~~~~~  248 (285)
                      +..+.+...
T Consensus       264 ~a~ys~~~~  272 (343)
T KOG0286|consen  264 LAVYSHDSI  272 (343)
T ss_pred             EeeeccCcc
Confidence            877655443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.1e-33  Score=230.18  Aligned_cols=245  Identities=16%  Similarity=0.197  Sum_probs=205.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccC--------CcC---------CCCCcccccccccCCCCCcceEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS--------PIS---------SDTPVDTFCPRHLIGKNNIHITG   66 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~h~~~v~~   66 (285)
                      ..++|..|++++ .+||.|..|-.|++|.+...++..        ...         ............ +.+|.++|..
T Consensus       379 ~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~-L~GH~GPVyg  456 (707)
T KOG0263|consen  379 QGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT-LYGHSGPVYG  456 (707)
T ss_pred             CcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE-eecCCCceee
Confidence            468999999986 799999999999999998432111        000         000111111222 4799999999


Q ss_pred             EEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeE
Q 023246           67 LAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  145 (285)
Q Consensus        67 i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  145 (285)
                      +.|+|+.++|++++ |+++++|.+.+.                .++-.+++|..+  |..+.| +|.|-|++|++.|++.
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~tA  517 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQTA  517 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCcee
Confidence            99999999999975 999999999988                788999999977  999998 9999999999999999


Q ss_pred             EEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeC
Q 023246          146 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLT  224 (285)
Q Consensus       146 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s  224 (285)
                      ++|.....++++.+.+|.+.|.|+.|+|+..|++|||.|.++|+||..++. ++.+.+|..++..+.. ++.++++++|+
T Consensus       518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~-Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF-SPCGRYLASGD  596 (707)
T ss_pred             eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE-cCCCceEeecc
Confidence            999999999999999999999999999999999999999999999998776 5778899999877765 56888999999


Q ss_pred             CCCeEEEEEecccccc----------eeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          225 PDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       225 ~d~~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .|+.|.+||+..+..+          ..+.++.++..++++..++.|-++++..-.
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999999999986443          345788889999999888889888876443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.2e-33  Score=215.07  Aligned_cols=202  Identities=17%  Similarity=0.320  Sum_probs=176.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      +.+|..+.|.|+| +.|++|+..|.+.+|+..+-               ....++..|..+|+++.|++++.++++|+ +
T Consensus        96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g  159 (464)
T KOG0284|consen   96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG  159 (464)
T ss_pred             ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence            5689999999986 99999999999999998543               44556689999999999999999999986 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-CceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |.|++|+....                 .++.+..|. ..  |++++| +|+...|+++++||+|+|||....+....+.
T Consensus       160 G~iKyWqpnmn-----------------nVk~~~ahh~ea--IRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~  219 (464)
T KOG0284|consen  160 GMIKYWQPNMN-----------------NVKIIQAHHAEA--IRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR  219 (464)
T ss_pred             ceEEecccchh-----------------hhHHhhHhhhhh--hheecc-CCCCceeEEecCCCeEEEEeccCCchhheec
Confidence            99999998765                 566666665 44  999998 9999999999999999999999888888999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      +|...|.+++|+|....+++++.|..|++||++++. +.++..|...+..+.+... ..+|+++|.|..++++|++.-+.
T Consensus       220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHH
Confidence            999999999999999999999999999999998875 6888889988888877444 47999999999999999995443


Q ss_pred             ce
Q 023246          240 LA  241 (285)
Q Consensus       240 ~~  241 (285)
                      +.
T Consensus       299 l~  300 (464)
T KOG0284|consen  299 LF  300 (464)
T ss_pred             HH
Confidence            33

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=197.82  Aligned_cols=213  Identities=16%  Similarity=0.230  Sum_probs=178.5

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      |+..-|+.++|+|.+ +++|+|+-|+...||++.+.+....         ......+.+|++-+.++.|-+|+++|.++.
T Consensus        95 l~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g~---------~~v~r~l~gHtgylScC~f~dD~~ilT~SG  164 (343)
T KOG0286|consen   95 LPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEGN---------VRVSRELAGHTGYLSCCRFLDDNHILTGSG  164 (343)
T ss_pred             cCceeEEEEEECCCC-CeEEecCcCceeEEEeccccccccc---------ceeeeeecCccceeEEEEEcCCCceEecCC
Confidence            567789999999975 9999999999999999986532111         023333489999999999999888888888


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |.+..+||++++                +.+..|.+|...  |.++++ +| +++.+++|+-|+..++||++.+.++.+|
T Consensus       165 D~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  165 DMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             CceEEEEEcccc----------------eEEEEecCCccc--EEEEec-CCCCCCeEEecccccceeeeeccCcceeEee
Confidence            999999999999                799999999988  999997 88 9999999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC--CCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .+|.+.|+++.|.|+|.-|++|+.|++.|+||++.... ..+.  ....++..+ ..+..++++++|..|..+.+||.-.
T Consensus       226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv-~FS~SGRlLfagy~d~~c~vWDtlk  304 (343)
T KOG0286|consen  226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV-AFSKSGRLLFAGYDDFTCNVWDTLK  304 (343)
T ss_pred             cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE-EEcccccEEEeeecCCceeEeeccc
Confidence            99999999999999999999999999999999988653 2222  112233333 3456788999999999999999887


Q ss_pred             cccceeE
Q 023246          237 RQTLAYR  243 (285)
Q Consensus       237 ~~~~~~~  243 (285)
                      ++....+
T Consensus       305 ~e~vg~L  311 (343)
T KOG0286|consen  305 GERVGVL  311 (343)
T ss_pred             cceEEEe
Confidence            7665443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-31  Score=221.33  Aligned_cols=235  Identities=17%  Similarity=0.304  Sum_probs=192.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|.++.|+|++ ..+++++.|+.+++|+....+.       .     ....+ .+|...|.+++|+|+++++++++ |
T Consensus       159 ~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~-------~-----~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D  224 (456)
T KOG0266|consen  159 CPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS-------N-----LLREL-SGHTRGVSDVAFSPDGSYLLSGSDD  224 (456)
T ss_pred             cCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc-------h-----hhccc-cccccceeeeEECCCCcEEEEecCC
Confidence            4678899999986 7899999999999999965541       0     11222 78999999999999999999965 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|+|||+....               ..++++.+|...  |++++| +|.++++++|+.|++|++||+++++++..+.+
T Consensus       225 ~tiriwd~~~~~---------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~  286 (456)
T KOG0266|consen  225 KTLRIWDLKDDG---------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG  286 (456)
T ss_pred             ceEEEeeccCCC---------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEeeec
Confidence            999999993321               688999999977  999998 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCccc-ceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      |.+.|++++|++++++|++++.|+.|++||+.++.   ...+.++... .+......++..++++++.|+.+++||+++.
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            99999999999999999999999999999998887   3455555555 5555566778889999999999999999976


Q ss_pred             ccceeEe-------------eeccccccCCCCCcCeEEEeecCCC
Q 023246          238 QTLAYRE-------------RRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       238 ~~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ..+....             ..+.+..+.++..++.|++++...+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~  411 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG  411 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence            5443331             1233444555566777777777654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.4e-32  Score=205.04  Aligned_cols=230  Identities=17%  Similarity=0.294  Sum_probs=185.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .+-|.|+++.|-+ ..|++|+.|++++|||+.++++               ...+.+|...|..+++|+-..|++++ .|
T Consensus       151 lgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L---------------kltltGhi~~vr~vavS~rHpYlFs~ged  214 (460)
T KOG0285|consen  151 LGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL---------------KLTLTGHIETVRGVAVSKRHPYLFSAGED  214 (460)
T ss_pred             cceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE---------------EEeecchhheeeeeeecccCceEEEecCC
Confidence            4678999999965 8999999999999999999963               33338899999999999999998885 69


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|+.||+...                +.++.+.+|-..  |.+++. .|.-..|++|+.|.++++||+++...+..+.+
T Consensus       215 k~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~l~G  275 (460)
T KOG0285|consen  215 KQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG  275 (460)
T ss_pred             CeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEEecC
Confidence            99999999988                789999999977  999997 89999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |..+|..+.+.|....+++|+.|++|++||++.++ ..++..|...+.++.. .+....+++++.| .++-|++..+..+
T Consensus       276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l-hP~e~~fASas~d-nik~w~~p~g~f~  353 (460)
T KOG0285|consen  276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL-HPKENLFASASPD-NIKQWKLPEGEFL  353 (460)
T ss_pred             CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEec-CCchhhhhccCCc-cceeccCCccchh
Confidence            99999999999999999999999999999998887 4556656666555432 2233345555555 6799999887665


Q ss_pred             eeE-eeecccc--------ccCCCCCcCeEEEeecCCC
Q 023246          241 AYR-ERRYNAA--------DFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       241 ~~~-~~~~~~~--------~~~~~~~~~~v~~~~~~~~  269 (285)
                      .-+ .+.....        .+..+.+.|.+++++..+|
T Consensus       354 ~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  354 QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             hccccccceeeeeeeccCceEEEcCCceEEEEEecCcC
Confidence            543 1111122        2344455566677766665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.6e-30  Score=188.64  Aligned_cols=205  Identities=18%  Similarity=0.298  Sum_probs=171.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++++|..++|+|-.+.+||+|+.|+.|+||+...+...           .|...+-.+|+..|++++|+|.|++|++++ 
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~-----------~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW-----------TCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE-----------EEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            45689999999952579999999999999999853310           144455578999999999999999999976 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC---ceEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVR  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~  157 (285)
                      |.++.||.-..+              .++++.++.+|.+.  |.+++| +++|++|++++.|..|-+|.+..+   +++.
T Consensus        82 D~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfec~a  144 (312)
T KOG0645|consen   82 DATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFECIA  144 (312)
T ss_pred             cceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEEEEe
Confidence            999999987654              34688999999988  999996 999999999999999999998743   4788


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC-CC---CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PT---DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      .++.|.+.|..+.|+|....|++++.|.+|++|.-. ..   ..+++.+|...+-.+.. .+.+..+++++.|++++||.
T Consensus       145 VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F-~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  145 VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF-DNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe-cCCCceEEEecCCcceEeee
Confidence            899999999999999999999999999999999875 33   25778888877666543 33355789999999999998


Q ss_pred             ec
Q 023246          234 LQ  235 (285)
Q Consensus       234 ~~  235 (285)
                      ..
T Consensus       224 ~~  225 (312)
T KOG0645|consen  224 LY  225 (312)
T ss_pred             ec
Confidence            54

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.2e-31  Score=219.64  Aligned_cols=221  Identities=19%  Similarity=0.342  Sum_probs=181.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ...|.+++|+|++ .++++++.|++++|||+... .              +...+ .+|...|++++|+|+++++++|+ 
T Consensus       203 ~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~--------------~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~  266 (456)
T KOG0266|consen  203 TRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR--------------NLKTL-KGHSTYVTSVAFSPDGNLLVSGSD  266 (456)
T ss_pred             ccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe--------------EEEEe-cCCCCceEEEEecCCCCEEEEecC
Confidence            4579999999986 89999999999999999433 3              44444 79999999999999999999975 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc--eEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~~~~  158 (285)
                      |++|+|||+.++                ++...+.+|...  |.+++| +++++++++++.|+.|++||+.+++  ++..
T Consensus       267 D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  267 DGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             CCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE-CCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            999999999987                799999999987  999998 9999999999999999999999998  5677


Q ss_pred             Eeccccc--ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceee--ccccCCCceEEEeCCCCeEEEEE
Q 023246          159 MVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKA--NKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       159 ~~~h~~~--v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      +..+...  +++++|+|++.+++++..|+.+++||++... ...+.+|...+.+.  ........++++++.|+.|++|+
T Consensus       328 ~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~  407 (456)
T KOG0266|consen  328 LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD  407 (456)
T ss_pred             ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence            7766655  9999999999999999999999999998665 45666666543222  11233577999999999999999


Q ss_pred             ecccccceeEeee--ccccccCCCCCc
Q 023246          234 LQRRQTLAYRERR--YNAADFESDEEE  258 (285)
Q Consensus       234 ~~~~~~~~~~~~~--~~~~~~~~~~~~  258 (285)
                      +.++..+..+...  .....+..+..+
T Consensus       408 ~~s~~~~~~l~~h~~~~~~~~~~~~~~  434 (456)
T KOG0266|consen  408 SSSGGILQRLEGHSKAAVSDLSSHPTE  434 (456)
T ss_pred             CCccchhhhhcCCCCCceeccccCCCc
Confidence            9988777666433  333344444444

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=1.7e-30  Score=187.56  Aligned_cols=203  Identities=14%  Similarity=0.275  Sum_probs=165.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +.+.|+++.|..+| +.++||+.||+++|||++...              +.+.  ..|..+|+++..+|+...|+++ .
T Consensus        82 h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~qR~--~~~~spVn~vvlhpnQteLis~dq  144 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------CQRN--YQHNSPVNTVVLHPNQTELISGDQ  144 (311)
T ss_pred             cCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------cchh--ccCCCCcceEEecCCcceEEeecC
Confidence            35679999999986 999999999999999999754              3333  3567899999999987777776 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC------c
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG------K  154 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------~  154 (285)
                      +|.|++||+...                .+...+..... ..|.++.. .|+|.+++.+...|..++|++-+.      +
T Consensus       145 sg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  145 SGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MPDGSMLAAANNKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             CCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cCCCcEEEEecCCccEEEEEccCCCccccce
Confidence            999999999876                34444332222 45999997 999999999999999999998654      3


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      ++..++.|++.+..+.++|++++|++++.|++++||+.+.. ++ ..+.+|...+-... .+.++++++++++|+.+++|
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~-FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA-FSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee-eccCccEEEecCCCCceeec
Confidence            56778899999999999999999999999999999999887 32 45666766654332 46688899999999999999


Q ss_pred             Eecccccc
Q 023246          233 RLQRRQTL  240 (285)
Q Consensus       233 d~~~~~~~  240 (285)
                      ++..++.+
T Consensus       286 ~~~~~k~v  293 (311)
T KOG0315|consen  286 DLSAGKEV  293 (311)
T ss_pred             ccccCcee
Confidence            99988755

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.98  E-value=1.2e-30  Score=203.59  Aligned_cols=213  Identities=13%  Similarity=0.209  Sum_probs=174.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCC---------------------cccc-----cccc
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP---------------------VDTF-----CPRH   55 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---------------------~~~~-----~~~~   55 (285)
                      +++||.++.|+.+| ++|++++.|+++.+||..+++....+.....                     +..+     .+..
T Consensus       275 HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~  353 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK  353 (524)
T ss_pred             cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence            58999999999986 9999999999999999988765333221110                     0000     1222


Q ss_pred             cCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           56 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        56 ~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      .+.+|.++|.++.|.|.|.+|++++ |++++||.....                ...+.+..|...  |..+.| +|.+.
T Consensus       354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----------------~~~~~l~~Hske--i~t~~w-sp~g~  414 (524)
T KOG0273|consen  354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----------------NSVHDLQAHSKE--IYTIKW-SPTGP  414 (524)
T ss_pred             eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC----------------cchhhhhhhccc--eeeEee-cCCCC
Confidence            3368999999999999999999975 999999998776                688889999865  999985 77653


Q ss_pred             ---------EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcc
Q 023246          135 ---------YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE  205 (285)
Q Consensus       135 ---------~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~  205 (285)
                               .+++++.|++|++||+..+.+++.|..|+.+|++++|+|+++++|+|+.||.|.+|+.+.+++..-.....
T Consensus       415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence                     68999999999999999999999999999999999999999999999999999999999998754444555


Q ss_pred             cceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          206 KIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .++.+.|... +.++.....|+.+.+.|++
T Consensus       495 ~Ifel~Wn~~-G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  495 GIFELCWNAA-GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eEEEEEEcCC-CCEEEEEecCCCceEEEec
Confidence            5777766444 4677778889999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=1.2e-31  Score=205.63  Aligned_cols=203  Identities=13%  Similarity=0.222  Sum_probs=179.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.++.|++++ .++++|..+|.|++|+..-..               +..+...|...|++++|+|....|+++ .|
T Consensus       138 Ds~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn---------------Vk~~~ahh~eaIRdlafSpnDskF~t~SdD  201 (464)
T KOG0284|consen  138 DSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN---------------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDD  201 (464)
T ss_pred             cccceeEEEccCC-CEEEEcCCCceEEecccchhh---------------hHHhhHhhhhhhheeccCCCCceeEEecCC
Confidence            3579999999975 999999999999999987542               333335566999999999988888886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|+|||....                +....+.+|.-.  |.++.| +|...++++++.|..|++||.++++++.++.+
T Consensus       202 g~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW-HP~kgLiasgskDnlVKlWDprSg~cl~tlh~  262 (464)
T KOG0284|consen  202 GTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW-HPTKGLIASGSKDNLVKLWDPRSGSCLATLHG  262 (464)
T ss_pred             CeEEEEeccCC----------------chhheeccCCCC--cceecc-CCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence            99999999887                677888999977  999995 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |...|..+.|+|++++|+|+|.|..++++|++.. ++..+.+|...+.++.|......++.+++.||.|..|.+...+.+
T Consensus       263 HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~  342 (464)
T KOG0284|consen  263 HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL  342 (464)
T ss_pred             ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence            9999999999999999999999999999999955 478899999999999888778889999999999999998844333

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=2.4e-31  Score=200.67  Aligned_cols=231  Identities=17%  Similarity=0.255  Sum_probs=169.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .+.|.|+.|..   ..+++|++|.+|+|||..+++              +...+ .+|...|..+.|+..  +++++ .|
T Consensus       237 tGSVLCLqyd~---rviisGSSDsTvrvWDv~tge--------------~l~tl-ihHceaVLhlrf~ng--~mvtcSkD  296 (499)
T KOG0281|consen  237 TGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE--------------PLNTL-IHHCEAVLHLRFSNG--YMVTCSKD  296 (499)
T ss_pred             CCcEEeeeccc---eEEEecCCCceEEEEeccCCc--------------hhhHH-hhhcceeEEEEEeCC--EEEEecCC
Confidence            35566666654   477777777777777777776              33333 567777777777643  55554 47


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .++.+||+..+.             ...+.+.+.+|...  |+.+.|   +.+++++++.|.+|++|++.+++.++++.+
T Consensus       297 rsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~g  358 (499)
T KOG0281|consen  297 RSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNG  358 (499)
T ss_pred             ceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc---ccceEEEecCCceEEEEeccceeeehhhhc
Confidence            777777776541             12355677899977  999987   567999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |+..|.|+.+  .++++++|+.|.+|++||+..+. +..+.+|..-+.++-.   ++..+++|..||+|++||+.....+
T Consensus       359 HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  359 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceEEEEecccccCC
Confidence            9999999887  57899999999999999998886 5678888877765532   4458999999999999999876544


Q ss_pred             e-----------------eEeeeccccccCCCCCcCeEEEeecCCCCCCCCCC
Q 023246          241 A-----------------YRERRYNAADFESDEEEGETYLLGFSDSDASSEGG  276 (285)
Q Consensus       241 ~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  276 (285)
                      .                 .+....+...+.+...+..+.+++|.++..+..+.
T Consensus       434 ra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~~~~~  486 (499)
T KOG0281|consen  434 RAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPSAAEE  486 (499)
T ss_pred             cccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcccccc
Confidence            1                 12222233333333334449999999987765554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=208.13  Aligned_cols=202  Identities=16%  Similarity=0.335  Sum_probs=166.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      .++++++++||| .++|||+.||.|+|||..++-              |..++ ..|+..|+.++|+..|+.+++++ ||
T Consensus       351 ~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf--------------C~vTF-teHts~Vt~v~f~~~g~~llssSLDG  414 (893)
T KOG0291|consen  351 DRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF--------------CFVTF-TEHTSGVTAVQFTARGNVLLSSSLDG  414 (893)
T ss_pred             cceeeEEECCCC-cEEEeccCCCcEEEEeccCce--------------EEEEe-ccCCCceEEEEEEecCCEEEEeecCC
Confidence            478999999986 899999999999999999885              66666 88999999999999999888865 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC-eEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~  161 (285)
                      +|+.||+...                +..++|..... ....+++. +|.|..+.+|+.|. .|++|++++|+.+-.+.+
T Consensus       415 tVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG  476 (893)
T KOG0291|consen  415 TVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG  476 (893)
T ss_pred             eEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence            9999999877                56677765432 34678886 89999999999876 599999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      |.++|.+++|+|.+..|++++.|++||+||+-..  ...++. ....+..+.. .++++-++.++-||+|.+||.....+
T Consensus       477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsf-rPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSF-RPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEE-cCCCCeEEEEEecceEEEEEhhhcee
Confidence            9999999999999999999999999999998433  343343 3334444433 44566778888899999999877655


Q ss_pred             ce
Q 023246          240 LA  241 (285)
Q Consensus       240 ~~  241 (285)
                      ..
T Consensus       555 ~~  556 (893)
T KOG0291|consen  555 VG  556 (893)
T ss_pred             ec
Confidence            43

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.3e-29  Score=206.79  Aligned_cols=213  Identities=10%  Similarity=0.126  Sum_probs=161.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-~   80 (285)
                      .++|++++|+|.++++|++|+.|++|++||+.++.....  ..      .+...+.+|...|.+++|+|++ .+|+++ .
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~  146 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGA  146 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC------cceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence            568999999994458999999999999999986532110  00      1112237899999999999986 588885 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |++|+|||+.++                +....+.+|...  |.+++| +|++.+|++++.|+.|++||+++++.+..+.
T Consensus       147 DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        147 DMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE  207 (493)
T ss_pred             CCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            999999999887                577788888866  999997 9999999999999999999999999999999


Q ss_pred             ccccc-ceEeEEcCCCCeEEEEe----cCCcEEEEcCCCCC-C-CCCCCCcccceeeccccCCCceEEEeC-CCCeEEEE
Q 023246          161 GDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-F-PPLPDNAEKIMKANKQGREDHSRITLT-PDVIMHVL  232 (285)
Q Consensus       161 ~h~~~-v~~~~~~p~~~~l~t~~----~d~~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~d~~i~vw  232 (285)
                      +|.+. +..+.|.+++..+++++    .|+.|++||++... . .....+............+..++++++ .|+.|++|
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw  287 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF  287 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence            88765 45678999888877765    47899999997643 2 222212222222222344555666665 59999999


Q ss_pred             Eeccccccee
Q 023246          233 RLQRRQTLAY  242 (285)
Q Consensus       233 d~~~~~~~~~  242 (285)
                      |+..++....
T Consensus       288 dl~~~~~~~~  297 (493)
T PTZ00421        288 ELMNERLTFC  297 (493)
T ss_pred             EeeCCceEEE
Confidence            9998765543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=4e-29  Score=180.46  Aligned_cols=222  Identities=15%  Similarity=0.205  Sum_probs=178.4

Q ss_pred             CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCC
Q 023246           15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLG   94 (285)
Q Consensus        15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~   94 (285)
                      .+-+|++++.|.+||+|...+|.              |..++ ......|+.+...|++++||++....|++||+++.. 
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~--------------C~rTi-qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~n-   72 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGI--------------CSRTI-QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNN-   72 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCe--------------EEEEE-ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCC-
Confidence            35799999999999999999998              55554 555778999999999999999999999999999872 


Q ss_pred             CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH  174 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  174 (285)
                                   ..++.+|.+|+..  |+++.| ..+|+.+++|++||+++|||++...+-+.+. |..+|+++..+|+
T Consensus        73 -------------p~Pv~t~e~h~kN--VtaVgF-~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn  135 (311)
T KOG0315|consen   73 -------------PNPVATFEGHTKN--VTAVGF-QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN  135 (311)
T ss_pred             -------------CCceeEEeccCCc--eEEEEE-eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC
Confidence                         2478899999866  999998 8999999999999999999999866665555 7799999999999


Q ss_pred             CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc-------------
Q 023246          175 IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL-------------  240 (285)
Q Consensus       175 ~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~-------------  240 (285)
                      ...|++|..+|.|++||+.... -.++.......+......+++.+++++...|..++|++-..+..             
T Consensus       136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~  215 (311)
T KOG0315|consen  136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN  215 (311)
T ss_pred             cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence            9999999999999999997763 23332222233333334566778888999999999998764322             


Q ss_pred             ---eeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          241 ---AYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       241 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                         .....+|+...++..+.+..++++..++-
T Consensus       216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence               12346788888888877778888876654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.4e-29  Score=186.03  Aligned_cols=230  Identities=17%  Similarity=0.224  Sum_probs=186.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      .++.|..+.|+|+| .+||+|+.|..|.+|++....              .-...+.+|.+.|..+.|.+++..+++ +.
T Consensus        46 h~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   46 HKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             CcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEEecC
Confidence            36789999999975 899999999999999987432              222333799999999999999998888 56


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |.+|+.||++++                +.++.+++|..-  ++.+.- ..- ...+.++++|+++++||+++...+.++
T Consensus       111 Dk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p-~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  111 DKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDP-SRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             CceEEEEecccc----------------eeeehhccccce--eeecCc-cccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            999999999999                788999999865  777763 333 456678999999999999999888887


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .. .-+++++.|..++..+.+|+-|+.|++||++... ...+.+|...+..+.. ++++.++++-+-|.++++||++...
T Consensus       172 ~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl-s~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  172 EN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL-SRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             cc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEe-ccCCCccccccccceEEEEEecccC
Confidence            63 5689999999999999999999999999997776 5778889888876654 5667788999999999999998642


Q ss_pred             c------------------ceeEeeeccccccCCCCCcCeEEEeecC
Q 023246          239 T------------------LAYRERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       239 ~------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                      .                  +.+..++|+...+..+..+.-+|+++..
T Consensus       250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~  296 (338)
T KOG0265|consen  250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT  296 (338)
T ss_pred             CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence            2                  2223456777777777666677777643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4e-30  Score=192.61  Aligned_cols=241  Identities=14%  Similarity=0.187  Sum_probs=191.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      +..+.|..|+||+ ++|++|+.||.|.+||..+|++.+-++..      ....+ .-+..+|.|+.|+.|.++||+|+ |
T Consensus       213 KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQ------Aqd~f-MMmd~aVlci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  213 KSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------AQDNF-MMMDDAVLCISFSRDSEMLASGSQD  284 (508)
T ss_pred             ccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhh------hhcce-eecccceEEEeecccHHHhhccCcC
Confidence            4567899999986 99999999999999999999864433221      11122 45788999999999999999976 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |.|++|.+.++                .+++.|. .|...  |+++.| +.++..+++++.|.++++--+.+|+++..+.
T Consensus       285 GkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr  345 (508)
T KOG0275|consen  285 GKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKEFR  345 (508)
T ss_pred             CcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHHhc
Confidence            99999999999                7888887 77755  999998 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +|.+.|+...|.++|.++++++.||+|++|+..+.. +.+++.  ..-++..+...+.....++.+....++++.+++..
T Consensus       346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ  425 (508)
T KOG0275|consen  346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ  425 (508)
T ss_pred             CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence            999999999999999999999999999999997665 444443  33445555555556667888888999999987653


Q ss_pred             ccceeE-------------eeeccccccCCCCCcCeEEEeecCCCCC
Q 023246          238 QTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       238 ~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                       .+..+             ..+|.+..+-+-.+++.+|.+....|..
T Consensus       426 -vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  426 -VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             -EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence             22222             2344555555556667778777666654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.8e-29  Score=178.75  Aligned_cols=221  Identities=14%  Similarity=0.172  Sum_probs=183.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .++|.++.|+-+| ++.++++.|.+|++|+...+.+              +++. .+|...|..++.+.|...|+++ .|
T Consensus        17 qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~l--------------iktY-sghG~EVlD~~~s~Dnskf~s~GgD   80 (307)
T KOG0316|consen   17 QGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGAL--------------IKTY-SGHGHEVLDAALSSDNSKFASCGGD   80 (307)
T ss_pred             ccceEEEEEccCC-CEEEEcCCCceEEeecccccce--------------eeee-cCCCceeeeccccccccccccCCCC
Confidence            5789999999986 9999999999999999998863              3333 8999999999999999988885 69


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--ceEEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~  159 (285)
                      ..+.+||+.++                +..+.|.+|...  |+.+.| +.+...+++|+.|..+++||.++.  +++..+
T Consensus        81 k~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   81 KAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             ceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccchh
Confidence            99999999999                899999999977  999998 889999999999999999997753  222211


Q ss_pred             ------------ec--------------------------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC
Q 023246          160 ------------VG--------------------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL  200 (285)
Q Consensus       160 ------------~~--------------------------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~  200 (285)
                                  ..                          -..+|+++.|+++++..+.++.|+++++.|-.++++ ...
T Consensus       142 dea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  142 DEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             hhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh
Confidence                        01                          135899999999999999999999999999999884 778


Q ss_pred             CCCcccceeeccccCC-CceEEEeCCCCeEEEEEecccccceeEeee--ccccccCCCCCc
Q 023246          201 PDNAEKIMKANKQGRE-DHSRITLTPDVIMHVLRLQRRQTLAYRERR--YNAADFESDEEE  258 (285)
Q Consensus       201 ~~~~~~~~~~~~~~~~-~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~  258 (285)
                      ++|...-+.+.++... ...++++|+||.+++||+....++..+...  +....+..++..
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence            8999888888776664 457899999999999999998888776432  234566666543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-29  Score=209.27  Aligned_cols=215  Identities=17%  Similarity=0.280  Sum_probs=184.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.++|.+++|+|+. .+|++|+.|-.|++|+..+.+              |..++ .+|-+-|+.+.|++.-..+++++ 
T Consensus        50 HdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr--------------clftL-~GHlDYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   50 HDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR--------------CLFTL-LGHLDYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             cCCccceeeecCCC-CeEEecCCccEEEEEecccce--------------ehhhh-ccccceeEEeeccCCCceEEEccC
Confidence            35899999999985 899999999999999999887              55655 79999999999999999999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC--------
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--------  152 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~--------  152 (285)
                      |.+|+||+.++.                +++..+.+|..-  |.|..| .|....+++++-|.+|+|||+..        
T Consensus       114 DQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF-hptEDlIVSaSLDQTVRVWDisGLRkk~~~p  174 (1202)
T KOG0292|consen  114 DQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF-HPTEDLIVSASLDQTVRVWDISGLRKKNKAP  174 (1202)
T ss_pred             CCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-CCccceEEEecccceEEEEeecchhccCCCC
Confidence            999999999998                899999999965  999998 89999999999999999999751        


Q ss_pred             C-------------------c--eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCcccce
Q 023246          153 G-------------------K--LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIM  208 (285)
Q Consensus       153 ~-------------------~--~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~  208 (285)
                      +                   .  ..+.+.+|...|+-++|+|.-..+++|+.|..|++|..+..+   +.+..+|...+-
T Consensus       175 g~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs  254 (1202)
T KOG0292|consen  175 GSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS  254 (1202)
T ss_pred             CCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence            1                   0  123567999999999999999999999999999999986654   567788988886


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEecccccceeEeeecccccc
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADF  252 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (285)
                      +..+ .+...++++.+.|++|+|||+.++..+..+.+..+..++
T Consensus       255 svlf-hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~  297 (1202)
T KOG0292|consen  255 SVLF-HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWI  297 (1202)
T ss_pred             eEEe-cCccceeEecCCCccEEEEecccccceeeeeccCCeEEE
Confidence            6654 344568999999999999999999888888666555443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.1e-29  Score=187.62  Aligned_cols=196  Identities=13%  Similarity=0.223  Sum_probs=168.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|.++.|-|.| .++++++.|.+|+.|++.++.              |.+++ .+|...|..++.+.||.++++++ |
T Consensus       193 ~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  193 EHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             ccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEecCCC
Confidence            3568899999986 999999999999999999997              66665 88999999999999999999965 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---------------CcEEEEecCCCeEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---------------DEYVMSGSDCGHLF  146 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~l~~~~~dg~v~  146 (285)
                      .+|++|-+.+.                .+...++.|..+  |.+++| .|.               ++++++++.|++|+
T Consensus       257 qtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  257 QTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             ceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccceEE
Confidence            99999999988                688889999977  888885 332               25899999999999


Q ss_pred             EEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCC
Q 023246          147 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP  225 (285)
Q Consensus       147 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  225 (285)
                      +||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++.. ...+..|..-+..+. ......++++|+-
T Consensus       318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD-fh~~~p~VvTGsV  396 (406)
T KOG0295|consen  318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD-FHKTAPYVVTGSV  396 (406)
T ss_pred             EEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe-cCCCCceEEeccc
Confidence            99999999999999999999999999999999999999999999998775 455655555444443 2444559999999


Q ss_pred             CCeEEEEEe
Q 023246          226 DVIMHVLRL  234 (285)
Q Consensus       226 d~~i~vwd~  234 (285)
                      |-.+++|..
T Consensus       397 dqt~KvwEc  405 (406)
T KOG0295|consen  397 DQTVKVWEC  405 (406)
T ss_pred             cceeeeeec
Confidence            999999964

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.1e-29  Score=203.01  Aligned_cols=207  Identities=15%  Similarity=0.152  Sum_probs=176.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..||.+..|-+. .+.+++|+.|..|+||+..+++              .+..+ ..|.+-|++++.+|.-.++.+++ |
T Consensus        55 ~~PvRa~kfiaR-knWiv~GsDD~~IrVfnynt~e--------------kV~~F-eAH~DyIR~iavHPt~P~vLtsSDD  118 (794)
T KOG0276|consen   55 EVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYNTGE--------------KVKTF-EAHSDYIRSIAVHPTLPYVLTSSDD  118 (794)
T ss_pred             ccchhhheeeec-cceEEEecCCceEEEEecccce--------------eeEEe-eccccceeeeeecCCCCeEEecCCc
Confidence            357888888886 4899999999999999999997              44444 89999999999999999888865 8


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      -+|++||.+..               +.+.++|.+|..-  |.+++|.+.+.+.+++++-|++|++|.+.+..+..++.+
T Consensus       119 m~iKlW~we~~---------------wa~~qtfeGH~Hy--VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g  181 (794)
T KOG0276|consen  119 MTIKLWDWENE---------------WACEQTFEGHEHY--VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG  181 (794)
T ss_pred             cEEEEeeccCc---------------eeeeeEEcCcceE--EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence            99999999865               4788999999955  999999555778999999999999999999999999999


Q ss_pred             ccccceEeEEcCC--CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          162 DRHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       162 h~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      |...|+++.+-|-  .++|++|+.|.+|++||..+.. ++++.+|...+.... ..+.-.++++|+.||++++|+..+.+
T Consensus       182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~-fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF-FHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE-ecCCCcEEEEecCCccEEEecCccee
Confidence            9999999999874  4689999999999999998775 688999988875443 24455689999999999999988765


Q ss_pred             cceeE
Q 023246          239 TLAYR  243 (285)
Q Consensus       239 ~~~~~  243 (285)
                      +...+
T Consensus       261 lE~tL  265 (794)
T KOG0276|consen  261 LEKTL  265 (794)
T ss_pred             hhhhh
Confidence            54443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.4e-29  Score=180.74  Aligned_cols=203  Identities=14%  Similarity=0.197  Sum_probs=168.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d   81 (285)
                      ..+..++|++...+++++++.||+++|||+....              .+...++.|...|.++.|++-.+ .+++++ |
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD  126 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD  126 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCC--------------cchhHHHhhhhheEEeccccccceeEEeeccC
Confidence            4577899999888999999999999999965443              33344489999999999998654 455555 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|++|+...+                +.+.+|.+|...  |....|.....+.+++++.|+.+++||++..-....+..
T Consensus       127 ~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a  188 (311)
T KOG0277|consen  127 GTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA  188 (311)
T ss_pred             CceEeecCCCC----------------cceEeecCCccE--EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe
Confidence            99999999887                788999999976  999997334678999999999999999876444444899


Q ss_pred             ccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          162 DRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       162 h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      |...+.++.|+.- ...++||+.|+.|+.||++..+  +..+.+|.-.+.++.+.+.....+++++.|-++++||.....
T Consensus       189 h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  189 HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence            9999999999874 4569999999999999998765  466778888888887766667789999999999999988653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.2e-28  Score=186.81  Aligned_cols=221  Identities=17%  Similarity=0.279  Sum_probs=180.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++.+|.+++.+|+ .++++||+.|..-.||++.+++              ....+ .+|...|+++.|+.+|.+||+|. 
T Consensus        63 H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge--------------~~~el-tgHKDSVt~~~FshdgtlLATGdm  126 (399)
T KOG0296|consen   63 HTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGE--------------FAGEL-TGHKDSVTCCSFSHDGTLLATGDM  126 (399)
T ss_pred             cCCceEEEEeCCC-CceEEecCCCceEEEEEccCCc--------------ceeEe-cCCCCceEEEEEccCceEEEecCC
Confidence            4678999999995 5999999999999999999986              22333 89999999999999999999986 


Q ss_pred             CCcEEEEEcCCCC--------------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           81 DELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        81 d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      +|.|.||...++.                          +....++-.+.+++....+.+.+|..+  +++=.| .|+|+
T Consensus       127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~pdGK  203 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IPDGK  203 (399)
T ss_pred             CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cCCCc
Confidence            9999999998875                          233344444556676788899999977  888887 89999


Q ss_pred             EEEEecCCCeEEEEecCCCceEEEEec---------------------------------------------------cc
Q 023246          135 YVMSGSDCGHLFIWKKKGGKLVRLMVG---------------------------------------------------DR  163 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------------------------------------------h~  163 (285)
                      .++++..||+|++|++.+++++..+..                                                   +.
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e  283 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE  283 (399)
T ss_pred             eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence            999999999999999999988775441                                                   11


Q ss_pred             ccceE---eEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          164 HVVNQ---LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       164 ~~v~~---~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      ..+.+   +.|+..-++.|+|+.||+|.|||+....++....|...++.+.|..  ..++++++.+|.|+.||.++++.+
T Consensus       284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             hhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceE
Confidence            11222   3333344568899999999999999999888888999999998865  568999999999999999999876


Q ss_pred             eeE
Q 023246          241 AYR  243 (285)
Q Consensus       241 ~~~  243 (285)
                      ...
T Consensus       362 ~~y  364 (399)
T KOG0296|consen  362 FTY  364 (399)
T ss_pred             EEE
Confidence            554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-29  Score=189.11  Aligned_cols=233  Identities=13%  Similarity=0.186  Sum_probs=197.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      +.+|+.+-|+|. -.++++++.|++|++||..+++              +...+ .+|...+..|+|+..|++|++++ |
T Consensus       108 r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~--------------~e~~L-rGHt~sv~di~~~a~Gk~l~tcSsD  171 (406)
T KOG0295|consen  108 RSSVTRVIFHPS-EALVVSASEDATIKVFDTETGE--------------LERSL-RGHTDSVFDISFDASGKYLATCSSD  171 (406)
T ss_pred             ccceeeeeeccC-ceEEEEecCCceEEEEEccchh--------------hhhhh-hccccceeEEEEecCccEEEecCCc
Confidence            467899999996 4899999999999999999998              43333 89999999999999999999965 7


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      -.+.+||.....               ++++.+.+|...  |.++.| -|.|.++++++.|.+|+.|++.++.++.++.+
T Consensus       172 l~~~LWd~~~~~---------------~c~ks~~gh~h~--vS~V~f-~P~gd~ilS~srD~tik~We~~tg~cv~t~~~  233 (406)
T KOG0295|consen  172 LSAKLWDFDTFF---------------RCIKSLIGHEHG--VSSVFF-LPLGDHILSCSRDNTIKAWECDTGYCVKTFPG  233 (406)
T ss_pred             cchhheeHHHHH---------------HHHHHhcCcccc--eeeEEE-EecCCeeeecccccceeEEecccceeEEeccC
Confidence            779999998642               677888888866  999998 68899999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCC--------------CceEEEeCCC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGRE--------------DHSRITLTPD  226 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~s~d  226 (285)
                      |...|..++.+.||..+++++.|.++++|-+.++. ...+..|..++-++.|....              ..++.+++.|
T Consensus       234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD  313 (406)
T KOG0295|consen  234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD  313 (406)
T ss_pred             chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence            99999999999999999999999999999998774 35566677666666554321              2488999999


Q ss_pred             CeEEEEEecccccceeE----------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          227 VIMHVLRLQRRQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       227 ~~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ++|++||+..+..+..+          .++|.+..+.+..|++.+-+++....
T Consensus       314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             ceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence            99999999998776654          35677888888888888888877654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=204.98  Aligned_cols=248  Identities=17%  Similarity=0.170  Sum_probs=184.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc--------------------------C------CcC------
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--------------------------S------PIS------   43 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~--------------------------~------~~~------   43 (285)
                      .++.|+++.||+|| .|||+|+.|+.|+||.+...+..                          .      ...      
T Consensus       266 h~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  266 HKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             cCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            46899999999986 99999999999999998761100                          0      000      


Q ss_pred             CCC-----Cc--ccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec
Q 023246           44 SDT-----PV--DTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  116 (285)
Q Consensus        44 ~~~-----~~--~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (285)
                      .+.     .+  -.-.+...+.+|.+.|..|.||.++.+|.++-|.+|++|++...                .++..|. 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~-  407 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS-  407 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe-
Confidence            000     00  00022334479999999999999877777777999999999887                7888886 


Q ss_pred             ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      |.+-  |+|++|++-|.+||++|+-||.|+||++...+.+.-...+ .-|++++|.|+|++.+.|+.+|.+++|+....+
T Consensus       408 Hndf--VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  408 HNDF--VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             cCCe--eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence            6644  9999996668999999999999999999977777655544 789999999999999999999999999987765


Q ss_pred             CCC---CC------CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE------------eeeccccccCCC
Q 023246          197 FPP---LP------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR------------ERRYNAADFESD  255 (285)
Q Consensus       197 ~~~---~~------~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~  255 (285)
                      +++   +.      .....|..+-..+.....++..+.|..|+|+|.+....+.++            .+..++..+.+.
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            321   11      112245555444444445777899999999999766555544            344577778888


Q ss_pred             CCcCeEEEeecCCCC
Q 023246          256 EEEGETYLLGFSDSD  270 (285)
Q Consensus       256 ~~~~~v~~~~~~~~~  270 (285)
                      .++..||++....-+
T Consensus       565 seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  565 SEDSWVYIWKNDSFN  579 (712)
T ss_pred             ecCceEEEEeCCCCc
Confidence            888889999875433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.4e-29  Score=191.12  Aligned_cols=224  Identities=18%  Similarity=0.297  Sum_probs=183.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|.|+.+..   ..+++|..|++|+|||..+..              |.+.+ .+|++.|.|+.|..  +.+++| +|
T Consensus       197 skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~--------------c~~~L-~GHtGSVLCLqyd~--rviisGSSD  256 (499)
T KOG0281|consen  197 SKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLE--------------CLKIL-TGHTGSVLCLQYDE--RVIVSGSSD  256 (499)
T ss_pred             CCceEEEEecc---hhhhcccccCceEEeccccHH--------------HHHhh-hcCCCcEEeeeccc--eEEEecCCC
Confidence            45788888865   589999999999999998776              55555 89999999999954  488886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---eEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~  158 (285)
                      .+|++||.+++                +++.++-+|...  |..+.|   +..++++++.|.++.+||+....   +.+.
T Consensus       257 sTvrvWDv~tg----------------e~l~tlihHcea--VLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rrV  315 (499)
T KOG0281|consen  257 STVRVWDVNTG----------------EPLNTLIHHCEA--VLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRRV  315 (499)
T ss_pred             ceEEEEeccCC----------------chhhHHhhhcce--eEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence            99999999999                799999999977  999998   36699999999999999987654   3456


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.+|...|+.+.|+  .+++++++.|.+|++|++.+.. +.++.+|...+-+...   .++++++||+|.+|++||+..+
T Consensus       316 LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  316 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEecccc
Confidence            77999999999995  5699999999999999998876 5788888888766544   4559999999999999999988


Q ss_pred             ccceeEe--------eeccccccCCCCCcCeEEEeecCCCCCC
Q 023246          238 QTLAYRE--------RRYNAADFESDEEEGETYLLGFSDSDAS  272 (285)
Q Consensus       238 ~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~  272 (285)
                      ..+..++        ...+...+.++.=+|.+-++++..+.+.
T Consensus       391 ~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  391 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             HHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence            7665542        2223455666767778888888776554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.1e-28  Score=202.15  Aligned_cols=206  Identities=15%  Similarity=0.138  Sum_probs=177.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|.+++++.-+..+|++++.|+++++|++...+..      .+...+........|...|++++.+|+.+++|+|+ |
T Consensus       411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~------~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD  484 (775)
T KOG0319|consen  411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET------AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD  484 (775)
T ss_pred             ccccceeeecccCccEEEEecCCceEEEecCCCcccc------cccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence            4578899999888899999999999999999863211      11111222333468999999999999999999976 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++.+||++...                ....++.+|+..  +.++.| ++..+.++|++.|++|++|.+.+..++.++.+
T Consensus       485 ktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F-s~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  485 KTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF-SKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             cceeeecccCc----------------eEEEEeeCCccc--eEEEEe-ccccceeEeccCCceEEEEEeccceeeeeecC
Confidence            99999999866                788999999966  999998 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      |...|..+.|-.+++.|++++.||.|++|++++.. +.++..|..++-.+.. .+....+++|+.||.|.+|.=
T Consensus       546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~-~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSV-SPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEee-cCccceeEecCCCeEEEEeec
Confidence            99999999999999999999999999999998775 6889999999876655 334448999999999999953

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.7e-28  Score=201.04  Aligned_cols=217  Identities=15%  Similarity=0.215  Sum_probs=171.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-ND   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d   81 (285)
                      ..|++++...+| .+|+||+.|+++++|.+..+...          ..+.. ...+|+..|.+++++..+. +|+++ .|
T Consensus       366 e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~----------~~~~a-~~~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  366 EAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSK----------SLCVA-QANGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             hheeeeeecccC-cEEEEecCCceEEEEEecCCcch----------hhhhh-hhcccccccceeeecccCccEEEEecCC
Confidence            457788855545 89999999999999999543210          01222 2379999999999988774 78885 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .++++|++......       ..........+...|.-.  |+++++ +|+.++++||+.|.+.++|+++....+.++.+
T Consensus       434 ~tlK~W~l~~s~~~-------~~~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~vLsG  503 (775)
T KOG0319|consen  434 CTLKLWDLPKSKET-------AFPIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLGVLSG  503 (775)
T ss_pred             ceEEEecCCCcccc-------cccceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEEEeeC
Confidence            99999999763100       001111122233456644  999998 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |+..|.++.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...+..... -..+..+++++.||.|++|++.+...+
T Consensus       504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F-~~~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF-IRNGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee-eeCCcEEEeccCCCcEEEEeccchhhh
Confidence            99999999999999999999999999999998775 6889999999877755 345667899999999999999998776


Q ss_pred             eeE
Q 023246          241 AYR  243 (285)
Q Consensus       241 ~~~  243 (285)
                      ..+
T Consensus       583 ~tl  585 (775)
T KOG0319|consen  583 MTL  585 (775)
T ss_pred             hhh
Confidence            554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.3e-27  Score=171.91  Aligned_cols=198  Identities=15%  Similarity=0.259  Sum_probs=165.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++..|.+++|+|.+ ++||+|+.|.++.||.-..++..            +.. .+.+|...|.+++|+++|.+||+++ 
T Consensus        60 hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efe------------cv~-~lEGHEnEVK~Vaws~sG~~LATCSR  125 (312)
T KOG0645|consen   60 HKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFE------------CVA-TLEGHENEVKCVAWSASGNYLATCSR  125 (312)
T ss_pred             chheeeeeeecCCC-cEEEEeeccceEEEeecCCCcee------------EEe-eeeccccceeEEEEcCCCCEEEEeeC
Confidence            35679999999986 89999999999999987766531            333 3489999999999999999999975 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---CCceEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLVR  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~~~~~~  157 (285)
                      |+.|-||.+...             ....+...++.|...  |..+.| +|...+|++++.|.+|++|+-.   .-+++.
T Consensus       126 DKSVWiWe~ded-------------dEfec~aVL~~HtqD--VK~V~W-HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~  189 (312)
T KOG0645|consen  126 DKSVWIWEIDED-------------DEFECIAVLQEHTQD--VKHVIW-HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQ  189 (312)
T ss_pred             CCeEEEEEecCC-------------CcEEEEeeecccccc--ccEEEE-cCCcceeEEeccCCeEEEEeecCCCCeeEEE
Confidence            999999999744             123678889999977  999996 9999999999999999999866   345789


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ++.+|...|.+++|+|.|..|++++.|++++||.....    +.. |...++.+.|.   +..+++++.|+.|+++.-..
T Consensus       190 tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  190 TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             EecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeeec---ccceEeccCCCEEEEEEecC
Confidence            99999999999999999999999999999999986532    221 44566666665   55899999999999997653

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.1e-27  Score=199.26  Aligned_cols=209  Identities=11%  Similarity=0.091  Sum_probs=154.3

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s~-   79 (285)
                      +.++|.+++|+|+++.+||+|+.|++|+|||+.++..... ...      .+...+.+|...|.+++|+|++.. |+++ 
T Consensus        73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIK------DPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccc------cceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            3568999999997568999999999999999986431000 000      111123789999999999999875 4564 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|++|++||+.++                +....+. +...  |.+++| +++|.+|++++.|+.|++||+++++.+.++
T Consensus       146 ~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw-spdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        146 FDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW-NIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             CCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE-CCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            5999999999877                4445554 3333  999996 999999999999999999999999999999


Q ss_pred             ecccccceEe-----EEcCCCCeEEEEecCC----cEEEEcCCC-CCC-CCCCCCc-ccceeeccccCCCceEEEeCCCC
Q 023246          160 VGDRHVVNQL-----EPHPHIPMFATCGIEK----TVKLWAPMP-TDF-PPLPDNA-EKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       160 ~~h~~~v~~~-----~~~p~~~~l~t~~~d~----~i~iwd~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      .+|.+.+...     .|++++.++++++.|+    +|++||++. ... ..+..+. ...+...+....+.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            9998765433     3458889999988775    799999985 332 2221111 12222223333466889999999


Q ss_pred             eEEEEEeccc
Q 023246          228 IMHVLRLQRR  237 (285)
Q Consensus       228 ~i~vwd~~~~  237 (285)
                      .|++|++..+
T Consensus       286 tIr~~e~~~~  295 (568)
T PTZ00420        286 NCRYYQHSLG  295 (568)
T ss_pred             eEEEEEccCC
Confidence            9999999765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.7e-28  Score=182.74  Aligned_cols=224  Identities=13%  Similarity=0.203  Sum_probs=174.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC---cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ++.++.+.+|+||| .++|||+.|-+|+|.|++..   .....+..+.+-....+...+..|...|+++.|+|....|++
T Consensus       111 HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             cccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            46788999999986 89999999999999998721   111111111111111222233689999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      ++ |++|++||....                ...+.++..+...++.++.| +|.|.+++.|.+..++++||+++-++..
T Consensus       190 ~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             ccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEeccceeEee
Confidence            75 999999999765                23334444444455999998 9999999999999999999999988865


Q ss_pred             EEe---cccccceEeEEcCCCCeEEEEecCCcEEEEcC-CCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          158 LMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP-MPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       158 ~~~---~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      ...   .|.+.|+++.+++.+++.+|++.||.|++||- .+.++.++. .|.+..++......+++++++.+.|..+++|
T Consensus       253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW  332 (430)
T KOG0640|consen  253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW  332 (430)
T ss_pred             ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence            543   68899999999999999999999999999996 444555543 4666666766667788999999999999999


Q ss_pred             EecccccceeE
Q 023246          233 RLQRRQTLAYR  243 (285)
Q Consensus       233 d~~~~~~~~~~  243 (285)
                      .+.+++.+...
T Consensus       333 Ei~t~R~l~~Y  343 (430)
T KOG0640|consen  333 EISTGRMLKEY  343 (430)
T ss_pred             eecCCceEEEE
Confidence            99998776554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.7e-27  Score=210.46  Aligned_cols=198  Identities=15%  Similarity=0.167  Sum_probs=160.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~-d   81 (285)
                      .+|.+++|+|....+|++++.||+|++||+.+++              ....+ .+|...|++++|+| ++.+|++++ |
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--------------~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~D  597 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--------------LVTEM-KEHEKRVWSIDYSSADPTLLASGSDD  597 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--------------EEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence            4678999998656899999999999999998775              22222 68999999999997 678888865 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~  160 (285)
                      ++|++||+..+                ..+..+..+ ..  +.++.|.++++.++++|+.||.|++||+++.+ .+..+.
T Consensus       598 g~v~iWd~~~~----------------~~~~~~~~~-~~--v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~  658 (793)
T PLN00181        598 GSVKLWSINQG----------------VSIGTIKTK-AN--ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI  658 (793)
T ss_pred             CEEEEEECCCC----------------cEEEEEecC-CC--eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence            99999999876                566666644 23  88898756789999999999999999998765 567788


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-------CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      +|...|.++.|. ++.+|++++.|++|++||++..       .+..+.+|...+..+.+ ...+.++++++.|+.+++|+
T Consensus       659 ~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~-s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL-SVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE-cCCCCEEEEEeCCCEEEEEE
Confidence            999999999997 6788999999999999998642       23456667665544433 44567999999999999999


Q ss_pred             eccc
Q 023246          234 LQRR  237 (285)
Q Consensus       234 ~~~~  237 (285)
                      ....
T Consensus       737 ~~~~  740 (793)
T PLN00181        737 KAFP  740 (793)
T ss_pred             CCCC
Confidence            7654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-27  Score=199.88  Aligned_cols=231  Identities=15%  Similarity=0.216  Sum_probs=180.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +..+|.+++|+|.. ..++++-..|.|++||.+.+.+              +..+ ..|.++|+.+.|+|+..+|++| .
T Consensus         8 kSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tl--------------i~rF-deHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTL--------------IDRF-DEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             ccccccceecCCCC-CEEEEeecCceeeeehhhhhhH--------------Hhhh-hccCCccceeeecCCCCeEEecCC
Confidence            45689999999975 7999999999999999998863              2333 8999999999999999999996 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |-.|+||+....                +++.++.+|-+-  |..+.| ++.-.+++++++|.+|+||+..+++++..+.
T Consensus        72 DykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   72 DYKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             ccEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence            999999999988                799999999976  999997 8999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC------------------------------CCCCCcccceee
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP------------------------------PLPDNAEKIMKA  210 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~------------------------------~~~~~~~~~~~~  210 (285)
                      +|...|.|..|+|....++++|.|.+||+||+.+-+..                              .+.+|...+...
T Consensus       133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa  212 (1202)
T KOG0292|consen  133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA  212 (1202)
T ss_pred             cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence            99999999999999999999999999999998542211                              011233332222


Q ss_pred             ccccCCCceEEEeCCCCeEEEEEecccccce------------eEeeeccccccCCCCCcCeEEEeecCC
Q 023246          211 NKQGREDHSRITLTPDVIMHVLRLQRRQTLA------------YRERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      .. .+.-.++++|+.|+.|++|.+...+...            ..-+.|...-+.+.++++.+-+++.+.
T Consensus       213 Af-hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  213 AF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             Ee-cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence            11 1223589999999999999987643321            122333333344445555566666543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.7e-27  Score=180.39  Aligned_cols=202  Identities=18%  Similarity=0.292  Sum_probs=175.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ..|..+++|+.. .++++++.|+.|+.||+...+.              +++. .+|-..|.+++.+|.-..|+++ .|.
T Consensus       194 ~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkv--------------IR~Y-hGHlS~V~~L~lhPTldvl~t~grDs  257 (460)
T KOG0285|consen  194 ETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKV--------------IRHY-HGHLSGVYCLDLHPTLDVLVTGGRDS  257 (460)
T ss_pred             heeeeeeecccC-ceEEEecCCCeeEEEechhhhh--------------HHHh-ccccceeEEEeccccceeEEecCCcc
Confidence            457789999975 7999999999999999998863              3333 7899999999999999988885 599


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      +++|||+++.                ..+..+.+|...  |..+.+ .|....+++|+.|++|++||++.|+...++..|
T Consensus       258 t~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~-~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h  318 (460)
T KOG0285|consen  258 TIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC-QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH  318 (460)
T ss_pred             eEEEeeeccc----------------ceEEEecCCCCc--ceeEEe-ecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence            9999999988                789999999987  999998 888889999999999999999999999999999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      ...|.+++.+|....|++++.| .|+-|++..+. +..+.+|..-+..+.  ...+..+++|+.+|.|..||.+++...+
T Consensus       319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~--~nsD~v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS--VNSDGVLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee--eccCceEEEcCCceEEEEEecCcCcccc
Confidence            9999999999999999999987 59999987665 566777777776663  3456689999999999999999886665


Q ss_pred             eE
Q 023246          242 YR  243 (285)
Q Consensus       242 ~~  243 (285)
                      ..
T Consensus       396 ~~  397 (460)
T KOG0285|consen  396 RG  397 (460)
T ss_pred             cc
Confidence            54

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=6.9e-27  Score=195.02  Aligned_cols=218  Identities=11%  Similarity=0.059  Sum_probs=155.4

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-cCCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~d~~   83 (285)
                      |.....++++ ..+++++.+.....|+...+.........+.+.  .....+.+|.+.|.+++|+| ++++|+++ .|++
T Consensus        23 i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         23 VTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             cccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            4444556653 456777777888888876543221111111110  11122378999999999999 77888886 5999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      |++||+......         ......+..+.+|...  |.+++| +|++ ++|++++.|+.|++||+++++.+..+.+|
T Consensus       100 IkIWdi~~~~~~---------~~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421        100 IMGWGIPEEGLT---------QNISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             EEEEecCCCccc---------cccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            999999754100         0011345678888866  999997 8875 79999999999999999999999999999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccce-eeccccCCCceEEE-e---CCCCeEEEEEecc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM-KANKQGREDHSRIT-L---TPDVIMHVLRLQR  236 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-~---s~d~~i~vwd~~~  236 (285)
                      ...|.+++|+|++.+|++++.|++|++||++.+.. ..+..|..... ...| ......+++ +   +.|+.|++||++.
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w-~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW-AKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE-cCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            99999999999999999999999999999987763 45555654432 2333 333344544 3   3579999999986


Q ss_pred             ccc
Q 023246          237 RQT  239 (285)
Q Consensus       237 ~~~  239 (285)
                      ...
T Consensus       247 ~~~  249 (493)
T PTZ00421        247 MAS  249 (493)
T ss_pred             CCC
Confidence            543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.2e-26  Score=207.14  Aligned_cols=234  Identities=12%  Similarity=0.182  Sum_probs=178.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~-~   80 (285)
                      ...|.+++|+|++ .+||+|+.|++|+||++........ ....++     ..  ..+...+.+++|++. +.+|+++ .
T Consensus       483 ~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~-----~~--~~~~~~v~~l~~~~~~~~~las~~~  553 (793)
T PLN00181        483 SNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPV-----VE--LASRSKLSGICWNSYIKSQVASSNF  553 (793)
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccce-----EE--ecccCceeeEEeccCCCCEEEEEeC
Confidence            4579999999975 8999999999999999864210000 000001     11  123467999999885 5688886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |++|++||+.++                +.+..+.+|...  |.+++| +| ++.+|++|+.|+.|++||+++++.+..+
T Consensus       554 Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~-~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        554 EGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY-SSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             CCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE-cCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            999999999877                677888889876  999997 65 7899999999999999999999998888


Q ss_pred             ecccccceEeEEc-CCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          160 VGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       160 ~~h~~~v~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ..+ ..|.++.|+ +++.+|++|+.|+.|++||++...  +..+.+|...+..+.+.  ++..+++++.|+.|++||+..
T Consensus       615 ~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        615 KTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             ecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCC
Confidence            754 679999995 578899999999999999997654  34566787777766552  556899999999999999874


Q ss_pred             c------ccce----------eEeeeccccccCCCCCcCeEEEeecC
Q 023246          237 R------QTLA----------YRERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       237 ~------~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                      .      ..+.          .+.+.+....++++..++.+++++..
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            2      1111          23455566677777778888887743

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.4e-28  Score=192.61  Aligned_cols=231  Identities=13%  Similarity=0.203  Sum_probs=188.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ...|+++.|.|....+|++++.|+.|+||++.. ++              |+.++ .+|..+|.+++|+++|..|.++ -
T Consensus       214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--------------~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--------------CLRTF-KGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             ccccchhhhccceeeEEEecCCCceEEEEEEecCcc--------------eehhh-hcchhhhhhhhccccCCeeeeeec
Confidence            467899999995569999999999999999987 43              44444 8999999999999999977775 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |+.|++||++++                +++..|....   .++++.| .|++ +.+++|+.|+.|+.||+++++.+..+
T Consensus       279 D~~lKlwDtETG----------------~~~~~f~~~~---~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  279 DRFLKLWDTETG----------------QVLSRFHLDK---VPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             ceeeeeeccccc----------------eEEEEEecCC---Cceeeec-CCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            999999999999                6777776443   3889998 7877 88999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC----CCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP----DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ..|-+.|..+.|-++++++++.+.|++++||+.+..-...+.    .|..+.+.+   .+....+++-+-|..|.++.+.
T Consensus       339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~---~P~~~~~~aQs~dN~i~ifs~~  415 (503)
T KOG0282|consen  339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL---HPNGKWFAAQSMDNYIAIFSTV  415 (503)
T ss_pred             HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceec---CCCCCeehhhccCceEEEEecc
Confidence            999999999999999999999999999999998776533222    233333333   3445578888889999998865


Q ss_pred             ccccc---------------eeEeeeccccccCCCCCcCeEEEeecCCCCC
Q 023246          236 RRQTL---------------AYRERRYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       236 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      ..-.+               ..+.++|++..+.+++.+|.++++++..-..
T Consensus       416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence            43221               1247899999999999999999999876543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=3.7e-27  Score=197.07  Aligned_cols=201  Identities=18%  Similarity=0.283  Sum_probs=173.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.+.|.++++.. ++.++++|+.|.++++||+.+++              |...+ .+|...|.++...+  .++++|+ 
T Consensus       248 H~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~--------------C~~~l-~gh~stv~~~~~~~--~~~~sgs~  309 (537)
T KOG0274|consen  248 HFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE--------------CTHSL-QGHTSSVRCLTIDP--FLLVSGSR  309 (537)
T ss_pred             CCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc--------------EEEEe-cCCCceEEEEEccC--ceEeeccC
Confidence            568899999988 56899999999999999999998              55555 79999999987754  3666655 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |.+|++|++.++                ..++.+.+|..+  |.++.+ +  +.++++|+.|+.|++||+.++++++++.
T Consensus       310 D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~-~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~  368 (537)
T KOG0274|consen  310 DNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL-D--EPLLVSGSYDGTVKVWDPRTGKCLKSLS  368 (537)
T ss_pred             CceEEEEeccCc----------------ceEEEecccccc--EEEEEe-c--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence            999999999988                788999989877  999987 4  8899999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      +|...|.++.+.+. .++++|+.|++|++||+++.  ++..+.+|..-+......   ...+++++.|++|++||..+++
T Consensus       369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc---cceeEeccccccEEEeecccCc
Confidence            99999999988765 78999999999999999888  467787777776444333   3489999999999999999998


Q ss_pred             cceeEee
Q 023246          239 TLAYRER  245 (285)
Q Consensus       239 ~~~~~~~  245 (285)
                      .+..+..
T Consensus       445 ~~~~~~~  451 (537)
T KOG0274|consen  445 CLRTLEG  451 (537)
T ss_pred             eeeeecc
Confidence            8877754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=6.1e-27  Score=178.40  Aligned_cols=241  Identities=12%  Similarity=0.168  Sum_probs=184.1

Q ss_pred             ccceeEEEEcCCCC--cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246            3 SIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      .++|.+++|.-.++  ..|++++.|.++++|-...++....          +.... .+|...|.++...++|..+++++
T Consensus       144 t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~----------~~~~~-~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  144 TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK----------ALKVC-RGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh----------HHhHh-cccccceeEEEecCCCCeEEeec
Confidence            45777777744332  3699999999999999987763211          11111 59999999999999999999987


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCC---------ccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSP---------EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                       |.+|.||+..+...........         .......++..+.+|+.+  |.++.| ++ ...+++++.|.+|+.||+
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~--Vs~V~w-~d-~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP--VSSVVW-SD-ATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc--eeeEEE-cC-CCceEeecccceEEEEEe
Confidence             9999999944332111111111         112233567788999977  999996 65 778999999999999999


Q ss_pred             CCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCC
Q 023246          151 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      .++....++.. ....+++..+|..++|++|+.|..|++||++.+.    .+++.+|...+-.+.|...+...+++++.|
T Consensus       289 etg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  289 ETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             ecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            99999988885 4689999999999999999999999999998764    367889999998888877788899999999


Q ss_pred             CeEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          227 VIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      +++++||+++...+.        ..+..+.+.  |+.++..++
T Consensus       368 ~t~klWDvRS~k~pl--------ydI~~h~DK--vl~vdW~~~  400 (423)
T KOG0313|consen  368 NTVKLWDVRSTKAPL--------YDIAGHNDK--VLSVDWNEG  400 (423)
T ss_pred             CeEEEEEeccCCCcc--------eeeccCCce--EEEEeccCC
Confidence            999999999876332        233333333  666666554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=3.7e-26  Score=180.56  Aligned_cols=231  Identities=18%  Similarity=0.291  Sum_probs=180.3

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ++.+|++++|+|++ .+|++++.||.+++|++.+++              .... ...|...+..+.|+|++++++++ .
T Consensus         8 h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~--------------~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~   71 (289)
T cd00200           8 HTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGE--------------LLRT-LKGHTGPVRDVAASADGTYLASGSS   71 (289)
T ss_pred             cCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCC--------------cEEE-EecCCcceeEEEECCCCCEEEEEcC
Confidence            46789999999975 899999999999999998764              1122 25778889999999999888875 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++.|++|++...                +....+..|...  +.++.| .++++++++++.++.|++||+++++....+.
T Consensus        72 ~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  132 (289)
T cd00200          72 DKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTLR  132 (289)
T ss_pred             CCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence            999999999876                567777777755  999997 8888899999889999999999899998888


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      .|...|.+++|+|++.++++++.|+.|++||++..+ ...+..+...+..+.+ .+++..+++++.++.+++||++..+.
T Consensus       133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~  211 (289)
T cd00200         133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF-SPDGEKLLSSSSDGTIKLWDLSTGKC  211 (289)
T ss_pred             cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEE-CCCcCEEEEecCCCcEEEEECCCCce
Confidence            899999999999998888888889999999998665 4455555556655554 34455777788899999999986554


Q ss_pred             ceeE----------eeeccccccCCCCCcCeEEEeecCC
Q 023246          240 LAYR----------ERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       240 ~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      ...+          .+.++...+.....++.+++++...
T Consensus       212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            4433          2333333334444456677776654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1e-26  Score=191.26  Aligned_cols=232  Identities=13%  Similarity=0.197  Sum_probs=189.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCC-CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      ...+|..++|+..| ..||.|+.. |.+-||+..+...+              -. ..+|...+++++++|||+++|+| 
T Consensus       306 s~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYV--------------lK-QQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  306 SDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYV--------------LK-QQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             ccceeeEEEecccC-CEEEEcCCccceEEEEEeecccee--------------ee-ccccccceeeEEECCCCcEEEecc
Confidence            45789999999986 888888765 89999999876421              11 17899999999999999999996 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .||+|+|||..++                -+..+|..|+..  |+.+.| ...++.+++.+-||+|+.||+......+++
T Consensus       370 eDgKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  370 EDGKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             CCCcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-EecCCEEEEeecCCeEEeeeecccceeeee
Confidence            5999999999988                699999999987  999997 899999999999999999999999999988


Q ss_pred             eccc-ccceEeEEcCCCCeEEEEecCC-cEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          160 VGDR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       160 ~~h~-~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .... -...+++..|.|..++.|+.|. .|.+|++.++++ ..+.+|.+++..+.. .+....++++|.|.+|++||+-.
T Consensus       431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f-~~~~~~LaS~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF-SPDGSLLASGSWDKTVRIWDIFS  509 (893)
T ss_pred             cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE-ccccCeEEeccccceEEEEEeec
Confidence            7543 4567899999999998888776 699999998885 678899999877654 44555899999999999999876


Q ss_pred             cc-cce---------eEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          237 RQ-TLA---------YRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       237 ~~-~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .. +..         .+.+.|++..++...-+|.+-+++..++
T Consensus       510 s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  510 SSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             cCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            52 222         2356677777777666667777665543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-27  Score=190.37  Aligned_cols=227  Identities=16%  Similarity=0.268  Sum_probs=186.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..+|.++.++|.. ..++++-..|.|.|||..+..+.+.         |      .-..-+|++..|-+-.+.+++|+ |
T Consensus        13 SdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVks---------f------eV~~~PvRa~kfiaRknWiv~GsDD   76 (794)
T KOG0276|consen   13 SDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKS---------F------EVSEVPVRAAKFIARKNWIVTGSDD   76 (794)
T ss_pred             CCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeee---------e------eecccchhhheeeeccceEEEecCC
Confidence            4689999999986 6888899999999999998874332         2      22345888999999888999875 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~  160 (285)
                      ..|+||+.++.                +.++.|..|.+-  |.+++. +|...+++++++|-.|++||.+. ..+..++.
T Consensus        77 ~~IrVfnynt~----------------ekV~~FeAH~Dy--IR~iav-HPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe  137 (794)
T KOG0276|consen   77 MQIRVFNYNTG----------------EKVKTFEAHSDY--IRSIAV-HPTLPYVLTSSDDMTIKLWDWENEWACEQTFE  137 (794)
T ss_pred             ceEEEEecccc----------------eeeEEeeccccc--eeeeee-cCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence            99999999998                799999999976  999997 99999999999999999999875 35788999


Q ss_pred             cccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccC-CCceEEEeCCCCeEEEEEeccc
Q 023246          161 GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       161 ~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +|...|.+++|+|. .+.|++++.|++|++|.+.+.. ..++.+|...+.++..... +..++++|+.|.+++|||.+++
T Consensus       138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk  217 (794)
T KOG0276|consen  138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK  217 (794)
T ss_pred             CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence            99999999999995 5569999999999999996654 5788999999988877655 3459999999999999999998


Q ss_pred             ccceeEe----------eeccccccCCCCCcCeEEEe
Q 023246          238 QTLAYRE----------RRYNAADFESDEEEGETYLL  264 (285)
Q Consensus       238 ~~~~~~~----------~~~~~~~~~~~~~~~~v~~~  264 (285)
                      ..++.++          +.|.-+-+.+++++|.+-++
T Consensus       218 ~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW  254 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW  254 (794)
T ss_pred             HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence            7666553          23333334455555555444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.3e-26  Score=168.61  Aligned_cols=223  Identities=10%  Similarity=0.145  Sum_probs=168.6

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-   78 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-   78 (285)
                      |+..+|.+++|+.+| ..|++|+.|+++++|++...+.             .......+|.+.|-.++|+|.. .+|++ 
T Consensus        18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             hhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEEe
Confidence            456789999999986 9999999999999999987653             2223337899999999999876 46776 


Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-------
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-------  151 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-------  151 (285)
                      +.|.+|++||++.+                ++..........  +. +. |+|+|++++.++.|..|.+.|.+       
T Consensus        84 s~dk~ir~wd~r~~----------------k~~~~i~~~~en--i~-i~-wsp~g~~~~~~~kdD~it~id~r~~~~~~~  143 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSG----------------KCTARIETKGEN--IN-IT-WSPDGEYIAVGNKDDRITFIDARTYKIVNE  143 (313)
T ss_pred             cCCceEEEEEeccC----------------cEEEEeeccCcc--eE-EE-EcCCCCEEEEecCcccEEEEEecccceeeh
Confidence            46999999999988                455554433322  22 23 36666666666666555555544       


Q ss_pred             ----------------------------------CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-
Q 023246          152 ----------------------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-  196 (285)
Q Consensus       152 ----------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-  196 (285)
                                                        .-+++..+++|.....|+.|+|+|++||+|+.|..+.+||+...- 
T Consensus       144 ~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC  223 (313)
T KOG1407|consen  144 EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC  223 (313)
T ss_pred             hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh
Confidence                                              334555777899899999999999999999999999999997654 


Q ss_pred             CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCc
Q 023246          197 FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEE  258 (285)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
                      ++.+..+.=++..+ ..+.++++++++|+|..|-|-+++++.++..+........++.|+..
T Consensus       224 ~R~isRldwpVRTl-SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  224 ERCISRLDWPVRTL-SFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKR  284 (313)
T ss_pred             heeeccccCceEEE-EeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCC
Confidence            45555444444444 34678889999999999999999999888888777667777777665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=2.1e-26  Score=182.35  Aligned_cols=219  Identities=14%  Similarity=0.207  Sum_probs=160.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN--   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~--   80 (285)
                      .+++-..|+|.| .++|+|...|+|||||....+.             .++..+.--.++|..|+|+++++.++. |.  
T Consensus        60 ~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr  125 (603)
T KOG0318|consen   60 HQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR  125 (603)
T ss_pred             ceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence            467888999975 8999999999999999875332             222222445779999999999987766 53  


Q ss_pred             C--CcEEEEEcCCCCCCCC-------------------------CCCCCccccCCCCceEeecccCceeeeeEEEecCCC
Q 023246           81 D--ELVYLFEKNMGLGPSP-------------------------LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  133 (285)
Q Consensus        81 d--~~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  133 (285)
                      +  |.+.+||..+..+...                         ..+....-++.+...+++.|.  +.|.++.| +|+|
T Consensus       126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs--kFV~~VRy-sPDG  202 (603)
T KOG0318|consen  126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS--KFVNCVRY-SPDG  202 (603)
T ss_pred             cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc--cceeeEEE-CCCC
Confidence            2  4567777654431110                         011111123334444555666  45999998 9999


Q ss_pred             cEEEEecCCCeEEEEecCCCceEEEEe---cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-------------
Q 023246          134 EYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------------  197 (285)
Q Consensus       134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------------  197 (285)
                      .++++++.||++++||-.+++.+..+.   +|.+.|.+++|+||+..|+|++.|++++|||....++             
T Consensus       203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq  282 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ  282 (603)
T ss_pred             CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence            999999999999999999999999998   8999999999999999999999999999999864331             


Q ss_pred             -------------------------------CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          198 -------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       198 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                                                     ..+.+|...+..+.. .++..++++++.||.|.-|+..++..-
T Consensus       283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv-~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV-SPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE-cCCCCEEEeeccCceEEEEecCCcccc
Confidence                                           122334444433322 344578999999999999999877554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=5.2e-27  Score=182.50  Aligned_cols=220  Identities=20%  Similarity=0.279  Sum_probs=177.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-e
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-Y   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~   79 (285)
                      +.+.|+.+.+-|+++.++|+++..+.|.|||..+..-...     ....+.+...+.+|...-++++|++... .|++ +
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~  197 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS  197 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----ccccCCCceEEEeecccccccccccccceeEeecc
Confidence            3567889999999999999999999999999976542111     1113344555688998889999999765 4555 5


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC--CCceEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVR  157 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~--~~~~~~  157 (285)
                      .|++|++||+......         -+.......+.+|...  |..++|...+...|+++++|+.+.|||++  +.++..
T Consensus       198 ~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~  266 (422)
T KOG0264|consen  198 DDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH  266 (422)
T ss_pred             CCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence            6999999999866210         1112355678889877  99999844567788999999999999999  566777


Q ss_pred             EEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          158 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ...+|.+.|++++|+|.+.. ||||+.|++|.+||+|..+  +..+.+|...++++.|.+.....+++.+.|+.+.|||+
T Consensus       267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            88899999999999996665 9999999999999998764  68899999999999998888889999999999999999


Q ss_pred             ccc
Q 023246          235 QRR  237 (285)
Q Consensus       235 ~~~  237 (285)
                      .+-
T Consensus       347 s~i  349 (422)
T KOG0264|consen  347 SRI  349 (422)
T ss_pred             ccc
Confidence            764

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.7e-26  Score=191.72  Aligned_cols=189  Identities=14%  Similarity=0.159  Sum_probs=139.8

Q ss_pred             eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEe-cCCcEEEEEcCCCCCCCCCC
Q 023246           22 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS   99 (285)
Q Consensus        22 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~   99 (285)
                      |+.++.|++|+.....              ... .+.+|.+.|.+++|+|+ +.+|+++ .|++|+|||+.......   
T Consensus        50 GG~~gvI~L~~~~r~~--------------~v~-~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~---  111 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP--------------PVI-KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV---  111 (568)
T ss_pred             CCceeEEEeeecCCCc--------------eEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---
Confidence            4556777777765432              222 23789999999999997 6788886 59999999997541000   


Q ss_pred             CCCccccCCCCceEeecccCceeeeeEEEecCCCcE-EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeE
Q 023246          100 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF  178 (285)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  178 (285)
                         .  .....+..+.+|...  |.+++| +|++.. +++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus       112 ---~--~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        112 ---K--EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             ---c--ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence               0  000234567788866  999997 898875 5789999999999999998887776 56789999999999999


Q ss_pred             EEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccc----cCCCceEEEeCCC----CeEEEEEeccc
Q 023246          179 ATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ----GREDHSRITLTPD----VIMHVLRLQRR  237 (285)
Q Consensus       179 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~s~d----~~i~vwd~~~~  237 (285)
                      ++++.|+.|++||++++.. .++.+|...+.....+    ..+..++++++.+    ++|++||++..
T Consensus       183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence            9999999999999998764 5566676554322221    2455577776655    48999999963

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.5e-26  Score=171.30  Aligned_cols=205  Identities=15%  Similarity=0.180  Sum_probs=165.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~   80 (285)
                      +++.|+.+.|.+++ +.+++++.|.+|+.||+++++              +.... .+|..-|+++.-+.-|. ++.+++
T Consensus        89 HsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~--------------~~rk~-k~h~~~vNs~~p~rrg~~lv~Sgs  152 (338)
T KOG0265|consen   89 HSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK--------------RIRKH-KGHTSFVNSLDPSRRGPQLVCSGS  152 (338)
T ss_pred             ccceeEeeeeccCC-CEEEEecCCceEEEEecccce--------------eeehh-ccccceeeecCccccCCeEEEecC
Confidence            57889999999986 899999999999999999998              33333 78999999998555565 555565


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                       |+++++||+++.                ..++++...   -.++++.| ...+..+.+|+-|+.|++||++....++.+
T Consensus       153 dD~t~kl~D~R~k----------------~~~~t~~~k---yqltAv~f-~d~s~qv~sggIdn~ikvWd~r~~d~~~~l  212 (338)
T KOG0265|consen  153 DDGTLKLWDIRKK----------------EAIKTFENK---YQLTAVGF-KDTSDQVISGGIDNDIKVWDLRKNDGLYTL  212 (338)
T ss_pred             CCceEEEEeeccc----------------chhhccccc---eeEEEEEe-cccccceeeccccCceeeeccccCcceEEe
Confidence             999999999977                566666432   23899997 889999999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-----CCCCCCCc--cc--ceeeccccCCCceEEEeCCCCeEE
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNA--EK--IMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~--~~--~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      .+|..+|+.+..+|+|.++.+-+.|.++++||.+...     +..+.++.  -.  ..... +++..+.+-+++.|..++
T Consensus       213 sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs-wsp~~~~i~ags~dr~vy  291 (338)
T KOG0265|consen  213 SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS-WSPNGTKITAGSADRFVY  291 (338)
T ss_pred             ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee-ccCCCCccccccccceEE
Confidence            9999999999999999999999999999999986432     23333332  22  22232 345667888999999999


Q ss_pred             EEEecccccceeE
Q 023246          231 VLRLQRRQTLAYR  243 (285)
Q Consensus       231 vwd~~~~~~~~~~  243 (285)
                      +||......+.++
T Consensus       292 vwd~~~r~~lykl  304 (338)
T KOG0265|consen  292 VWDTTSRRILYKL  304 (338)
T ss_pred             EeecccccEEEEc
Confidence            9998887666554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.9e-26  Score=179.86  Aligned_cols=233  Identities=15%  Similarity=0.209  Sum_probs=181.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d   81 (285)
                      ..|.++.|-.|| .+||+|...|.|+|+|+.+..               .-..+.+|+.+|..+.|+|++. +|++|+ |
T Consensus        69 ~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~---------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen   69 DVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV---------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             cceeEEEeecCC-eEEEccCCcCcEEEeccccHH---------------HHHHHhhccCceeEEEecccCCeEEEecCCC
Confidence            467889999986 999999999999999966532               2222389999999999999876 566665 7


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~  160 (285)
                      +.+++||+.+.                .....+.+|++-  |.+.+|.+.++..+++|+.||.|++||++.. ..+.++.
T Consensus       133 ~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln  194 (487)
T KOG0310|consen  133 KVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN  194 (487)
T ss_pred             ceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence            88999999887                344578889976  9999984445668999999999999999876 5666665


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                       |..+|..+.+-|.|..+++++. ..|++||+.++ +. ..+..|...+.++.... ++..+++++-|+.+++||+.+.+
T Consensus       195 -hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~K  271 (487)
T KOG0310|consen  195 -HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYK  271 (487)
T ss_pred             -CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceE
Confidence             8899999999999999999985 58999999744 33 44545888887776544 55789999999999999988877


Q ss_pred             cceeEeeeccccccCCCCCcCeEEEeecCCCCCCCC
Q 023246          239 TLAYRERRYNAADFESDEEEGETYLLGFSDSDASSE  274 (285)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  274 (285)
                      .......+.....++..+++ ...++|.++|-.+..
T Consensus       272 vv~s~~~~~pvLsiavs~dd-~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  272 VVHSWKYPGPVLSIAVSPDD-QTVVIGMSNGLVSIR  306 (487)
T ss_pred             EEEeeecccceeeEEecCCC-ceEEEecccceeeee
Confidence            77666666555555544433 366678887755443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=2.2e-26  Score=175.39  Aligned_cols=210  Identities=13%  Similarity=0.296  Sum_probs=165.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc--CCc--------CCCCCcccccccccCCCCCcceEEEEEec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--SPI--------SSDTPVDTFCPRHLIGKNNIHITGLAYSN   71 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~h~~~v~~i~~s~   71 (285)
                      ++..|-+++..+++ ..+++|+.|.+|+||+..+....  ...        +.++....-.+...+.+|+.+|.++.|++
T Consensus       192 Hk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             cccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            35789999999986 89999999999999994322110  000        01111122234455589999999999999


Q ss_pred             CCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           72 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        72 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                      .+..+.++-|.+|+.||+.++                .....+.+..   .++++.+ .+..++|++|+.|..+++||.+
T Consensus       271 ~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k---sl~~i~~-~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK---SLNCISY-SPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             CCceEeecccceEEEEEeecc----------------cceeeeecCc---ceeEeec-ccccceeeecCCCCceeecCCC
Confidence            544444456999999999988                5666665543   3899998 8999999999999999999988


Q ss_pred             CCc---eEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCC
Q 023246          152 GGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP  225 (285)
Q Consensus       152 ~~~---~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  225 (285)
                      ++.   ...++.+|++.|.++.|+|...+ |++++.|+++++||++..+  +..+.+|...+++..|.  +..++++|+.
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGa  408 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGA  408 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccC
Confidence            654   45788899999999999998776 9999999999999998765  56788899999888774  4458999999


Q ss_pred             CCeEEEEEe
Q 023246          226 DVIMHVLRL  234 (285)
Q Consensus       226 d~~i~vwd~  234 (285)
                      |.+|+++.-
T Consensus       409 D~~l~i~~~  417 (423)
T KOG0313|consen  409 DNKLRIFKG  417 (423)
T ss_pred             cceEEEecc
Confidence            999999853

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=2.3e-25  Score=176.06  Aligned_cols=205  Identities=20%  Similarity=0.346  Sum_probs=168.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...+..+.|+|++ .++++++.||.|++|++.+++              ....+ ..|...+.++.|++++++++++. +
T Consensus        51 ~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~--------------~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~  114 (289)
T cd00200          51 TGPVRDVAASADG-TYLASGSSDKTIRLWDLETGE--------------CVRTL-TGHTSYVSSVAFSPDGRILSSSSRD  114 (289)
T ss_pred             CcceeEEEECCCC-CEEEEEcCCCeEEEEEcCccc--------------ceEEE-eccCCcEEEEEEcCCCCEEEEecCC
Confidence            4567899999975 899999999999999998764              22222 56788999999999988998876 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++|++.+.                +....+..|...  +.++.| +++++++++++.++.|++||+++++.+..+..
T Consensus       115 ~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~  175 (289)
T cd00200         115 KTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF-SPDGTFVASSSQDGTIKLWDLRTGKCVATLTG  175 (289)
T ss_pred             CeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-cCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence            99999999866                566777777755  999997 89899999998899999999999999989999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |...+.+++|+|+++.+++++.|+.|++||++.... ..+..+...+..+.+ .++..++++++.++.+++|++...+..
T Consensus       176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~~~~~~  254 (289)
T cd00200         176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGECV  254 (289)
T ss_pred             CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE-cCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence            989999999999999999999999999999987653 445456666666654 334667777777999999999876555


Q ss_pred             eeE
Q 023246          241 AYR  243 (285)
Q Consensus       241 ~~~  243 (285)
                      ..+
T Consensus       255 ~~~  257 (289)
T cd00200         255 QTL  257 (289)
T ss_pred             EEc
Confidence            444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.5e-27  Score=168.70  Aligned_cols=199  Identities=14%  Similarity=0.185  Sum_probs=164.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-   79 (285)
                      ++.+|.++.|++...+.+++++.|++|++|+...++              .+.++ .+|...|...+|+|.. .+++++ 
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------SVQTF-NGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCc--------------ceEee-cCCccEEEEEecCCCCCCeEEEcc
Confidence            356899999999877899999999999999988665              22222 8899999999999965 577875 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL  158 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~  158 (285)
                      .|+++++||++..                .....+..|...  +.++.|...+.+.++||+.|+.|+.||++. ..++..
T Consensus       168 gd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e  229 (311)
T KOG0277|consen  168 GDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE  229 (311)
T ss_pred             CCceEEEEEecCC----------------CceeEEEeccce--eEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence            5999999999876                344458888866  999997445778899999999999999886 457889


Q ss_pred             EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      +.+|.-.|..++|+|... .|++++.|=+++|||+..+.  +.+...|.+-+..+.|.......+++.+-|..++||+
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            999999999999999765 49999999999999997443  4455567777777777666777999999999999997

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.3e-26  Score=194.35  Aligned_cols=256  Identities=17%  Similarity=0.223  Sum_probs=191.3

Q ss_pred             cceeEEEEcCCCCcEEEEee--CCCcEEEEEccCCc-cc--CCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH-WY--SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~--~dg~v~iwd~~~~~-~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ..|.+++.+|++ ..+|||+  .|+.++||+...-- ..  .....++      .......|.+.|+|+.|+|||++||+
T Consensus        14 ~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k------~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen   14 KSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPK------HLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             eeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccch------hheeeccccCceeEEEECCCCCeEee
Confidence            468899999986 8999999  99999999976321 00  0000111      12223789999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCCCCCC---CCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           79 YN-DELVYLFEKNMGLGPSP---LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        79 ~~-d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      |+ |..|.||..... ++..   .+-.......++....+.+|...  |..++| +|++.++++++.|++|.+|+..+.+
T Consensus        87 GSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF~  162 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAKTFE  162 (942)
T ss_pred             ccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEccccce
Confidence            76 888999998741 1111   11123345667888999999988  999995 9999999999999999999999999


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--------------------------------------
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--------------------------------------  196 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--------------------------------------  196 (285)
                      .+..+.+|.+.|..+.|+|-|++|++-+.|++|++|++..-.                                      
T Consensus       163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            999999999999999999999999999999999999853200                                      


Q ss_pred             ---------------CCCCCCCcccceeeccccC----CCc------------eEEEeCCCCeEEEEEeccccccee---
Q 023246          197 ---------------FPPLPDNAEKIMKANKQGR----EDH------------SRITLTPDVIMHVLRLQRRQTLAY---  242 (285)
Q Consensus       197 ---------------~~~~~~~~~~~~~~~~~~~----~~~------------~~~~~s~d~~i~vwd~~~~~~~~~---  242 (285)
                                     -..+-+|.+++......+.    ...            .+++|+.|++|.||.....+.+..   
T Consensus       243 ~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~  322 (942)
T KOG0973|consen  243 GKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN  322 (942)
T ss_pred             CcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence                           0012234443322211110    011            467899999999999876544433   


Q ss_pred             --------EeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          243 --------RERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       243 --------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                              +.+++++..|-..+-+|.|+++.|++++
T Consensus       323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  323 LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                    3678888888888888999999998764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.3e-26  Score=178.05  Aligned_cols=207  Identities=15%  Similarity=0.227  Sum_probs=166.6

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-ecCCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YNDEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~~d~~   83 (285)
                      =.+++|++...-.|++|+.|++|.+||+......        -....+...+.+|...|..++|++... +|++ +.|+.
T Consensus       180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             ccccccccccceeEeeccCCCcEEEEeccccccC--------CccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            3568999987779999999999999999865421        011145556689999999999999775 5566 56999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEecc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGD  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h  162 (285)
                      +.|||+++.              +.+..+...+|..+  +.+++|...++..||+|+.|++|++||+++- ++++++.+|
T Consensus       252 L~iwD~R~~--------------~~~~~~~~~ah~~~--vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H  315 (422)
T KOG0264|consen  252 LMIWDTRSN--------------TSKPSHSVKAHSAE--VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH  315 (422)
T ss_pred             EEEEEcCCC--------------CCCCcccccccCCc--eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence            999999952              01566777888877  9999984446778899999999999999874 578999999


Q ss_pred             cccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC-C--------------CCCCCCCcccceeeccccCCCceEEEeCCC
Q 023246          163 RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT-D--------------FPPLPDNAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      ...|..|.|+|+... |++++.|+.+.+||+..- .              +....+|...+....|.......+++.+.|
T Consensus       316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD  395 (422)
T KOG0264|consen  316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED  395 (422)
T ss_pred             CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence            999999999997665 999999999999998532 1              123446888888888888888899999999


Q ss_pred             CeEEEEEecc
Q 023246          227 VIMHVLRLQR  236 (285)
Q Consensus       227 ~~i~vwd~~~  236 (285)
                      +.++||.+..
T Consensus       396 N~LqIW~~s~  405 (422)
T KOG0264|consen  396 NILQIWQMAE  405 (422)
T ss_pred             ceEEEeeccc
Confidence            9999998764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=5.3e-25  Score=174.41  Aligned_cols=198  Identities=17%  Similarity=0.291  Sum_probs=166.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d   81 (285)
                      ...|++++|-|..+.+++||+.|++|.+|.=..-               ..+.....|..-|+++.|+|||.++++ ++|
T Consensus       147 Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF---------------KFk~s~r~HskFV~~VRysPDG~~Fat~gsD  211 (603)
T KOG0318|consen  147 SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF---------------KFKSSFREHSKFVNCVRYSPDGSRFATAGSD  211 (603)
T ss_pred             ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe---------------eeeecccccccceeeEEECCCCCeEEEecCC
Confidence            4579999999998999999999999999975432               334444789999999999999999999 679


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-  157 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-  157 (285)
                      |++.+||-.++                +.+..+.   +|+..  |.+++| +|+++.+++++.|.++++||+.+.+++. 
T Consensus       212 gki~iyDGktg----------------e~vg~l~~~~aHkGs--IfalsW-sPDs~~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  212 GKIYIYDGKTG----------------EKVGELEDSDAHKGS--IFALSW-SPDSTQFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             ccEEEEcCCCc----------------cEEEEecCCCCcccc--EEEEEE-CCCCceEEEecCCceEEEEEeeccceEEE
Confidence            99999999988                6777777   78876  999995 9999999999999999999988765543 


Q ss_pred             ------------------------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          158 ------------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       158 ------------------------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                                                                .+.+|...|+++..+|++++|.+|+.||.|.-|+...+
T Consensus       273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g  352 (603)
T KOG0318|consen  273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG  352 (603)
T ss_pred             eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence                                                      45688999999999999999999999999999999888


Q ss_pred             CCCCC--CCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          196 DFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       196 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ....+  ..|...+..+...  +...+++.+-|.++++.++..
T Consensus       353 ~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~  393 (603)
T KOG0318|consen  353 TSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKD  393 (603)
T ss_pred             cccccccccccceEEEEeec--CCCcEEEEecCCeEEEEeccc
Confidence            75544  5577777666432  334688899999999998754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=5.5e-27  Score=183.70  Aligned_cols=196  Identities=13%  Similarity=0.192  Sum_probs=163.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-e
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-Y   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-~   79 (285)
                      ++.+|.+++|++++ ..|++++.|+.+++||+++|++...              +  .-...++|+.|.|++ +.|++ +
T Consensus       257 H~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~--------------f--~~~~~~~cvkf~pd~~n~fl~G~  319 (503)
T KOG0282|consen  257 HRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSR--------------F--HLDKVPTCVKFHPDNQNIFLVGG  319 (503)
T ss_pred             chhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEE--------------E--ecCCCceeeecCCCCCcEEEEec
Confidence            46789999999986 8999999999999999999984322              1  224467899999998 55555 5


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE--
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--  157 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--  157 (285)
                      +|+.|+.||++++                +.++.+..|-..  |..+.| -++++++++.++|+.+++|+.+....+.  
T Consensus       320 sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i~F-~~~g~rFissSDdks~riWe~~~~v~ik~i  380 (503)
T KOG0282|consen  320 SDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDITF-VDEGRRFISSSDDKSVRIWENRIPVPIKNI  380 (503)
T ss_pred             CCCcEEEEeccch----------------HHHHHHHhhhhh--eeeeEE-ccCCceEeeeccCccEEEEEcCCCccchhh
Confidence            7999999999998                788888888876  999998 7999999999999999999977543221  


Q ss_pred             --------------------------------------------EEeccc--ccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246          158 --------------------------------------------LMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       158 --------------------------------------------~~~~h~--~~v~~~~~~p~~~~l~t~~~d~~i~iwd  191 (285)
                                                                  .+++|.  +.-..+.|||||.+|++|+.||.+.+||
T Consensus       381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence                                                        223443  3456689999999999999999999999


Q ss_pred             CCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          192 PMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       192 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      .++.+ +..++.|.+.++...|-......+++++.+|.|++|+
T Consensus       461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            98877 4678889888888888777788899999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.4e-25  Score=181.59  Aligned_cols=232  Identities=17%  Similarity=0.243  Sum_probs=183.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|+++.|+++| .+||+|..+|.|.|||..+.+              ....+...|...|-+++|.  +..+.+|. +
T Consensus       217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~~~~~~~~h~~rvg~laW~--~~~lssGsr~  279 (484)
T KOG0305|consen  217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------KTRTLRGSHASRVGSLAWN--SSVLSSGSRD  279 (484)
T ss_pred             CCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------ccccccCCcCceeEEEecc--CceEEEecCC
Confidence            4679999999986 899999999999999998776              4444423499999999998  55777765 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|..+|++...               ....++.+|...  |..+.| +++++++++|+.|+.+.|||....+++..+..
T Consensus       280 ~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~  341 (484)
T KOG0305|consen  280 GKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE  341 (484)
T ss_pred             CcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CCCCCeeccCCCccceEeccCCCccccEEEec
Confidence            999999998772               233347788866  999996 99999999999999999999988889999999


Q ss_pred             ccccceEeEEcCCCC-eEEEEe--cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE-eCCCCeEEEEEeccc
Q 023246          162 DRHVVNQLEPHPHIP-MFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRR  237 (285)
Q Consensus       162 h~~~v~~~~~~p~~~-~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~i~vwd~~~~  237 (285)
                      |...|.+++|+|-.. .||+|+  .|++|++||..++...........|..+.|.....+++.+ |..+..|.||+..+.
T Consensus       342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~  421 (484)
T KOG0305|consen  342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM  421 (484)
T ss_pred             cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence            999999999999544 588876  7999999999988765554566777788776666555555 566789999999765


Q ss_pred             cccee----------EeeeccccccCCCCCcCeEEEeecCCC
Q 023246          238 QTLAY----------RERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       238 ~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ..+..          +..+|++..+.....++.+-++.+.+.
T Consensus       422 ~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  422 KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            44333          355677777776666666777765553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=172.84  Aligned_cols=232  Identities=12%  Similarity=0.145  Sum_probs=183.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..+|.-+.||||+ ++|++++.|..+.+||+.++.+              ......+|...+.+++|.|||..+++|+ |
T Consensus       269 ~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~--------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d  333 (519)
T KOG0293|consen  269 SQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDL--------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPD  333 (519)
T ss_pred             cCceEEEEECCCC-CeEEecCchHheeeccCCcchh--------------hhhcccCcCCCcceeEEccCCceeEecCCC
Confidence            3578899999986 8999999999999999999983              3333345678899999999999888875 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +++..||+...                 .....++-+. ..|.+++. .++|+++++.+.|..+++++.++.........
T Consensus       334 r~i~~wdlDgn-----------------~~~~W~gvr~-~~v~dlai-t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise  394 (519)
T KOG0293|consen  334 RTIIMWDLDGN-----------------ILGNWEGVRD-PKVHDLAI-TYDGKYVLLVTVDKKIRLYNREARVDRGLISE  394 (519)
T ss_pred             CcEEEecCCcc-----------------hhhccccccc-ceeEEEEE-cCCCcEEEEEecccceeeechhhhhhhccccc
Confidence            99999999865                 3344444332 24899997 99999999999999999999987666554443


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccC--CCceEEEeCCCCeEEEEEecccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                       ..+|+++.++.+++++++.=.+..+++||++..+ +..+.+|...-+.+..++.  ++.++++||+|+.|+||+..+++
T Consensus       395 -~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk  473 (519)
T KOG0293|consen  395 -EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK  473 (519)
T ss_pred             -cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence             4689999999999998888889999999998665 4677787766544444443  55789999999999999999987


Q ss_pred             cceeEe----------eec-cccccCCCCCcCeEEEeecCCC
Q 023246          239 TLAYRE----------RRY-NAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       239 ~~~~~~----------~~~-~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+..+.          ..| +...+++.+|+|.|-+++..+.
T Consensus       474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            776652          233 3445788889999998887654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=5e-26  Score=170.77  Aligned_cols=209  Identities=16%  Similarity=0.208  Sum_probs=176.1

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      |-..+|.|+.|+.|. .++|+|+.||.|++|.+.+|.              |...+...|+..|+++.|+.|+..+.++ 
T Consensus       261 Mmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~--------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~s  325 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ--------------CLRRFDRAHTKGVTCLSFSRDNSQILSAS  325 (508)
T ss_pred             ecccceEEEeecccH-HHhhccCcCCcEEEEEEecch--------------HHHHhhhhhccCeeEEEEccCcchhhccc
Confidence            556789999999985 999999999999999999998              7777767999999999999999877775 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.++++.-+.++                ++++.|++|..-  |+...| .++|.++++++.||+|++|+..+.+++.++
T Consensus       326 fD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f-t~dG~~iisaSsDgtvkvW~~KtteC~~Tf  386 (508)
T KOG0275|consen  326 FDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF-TDDGHHIISASSDGTVKVWHGKTTECLSTF  386 (508)
T ss_pred             ccceEEEeccccc----------------hhHHHhcCcccc--ccceEE-cCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence            5999999999998                899999999966  999998 999999999999999999999999999888


Q ss_pred             ec--ccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCCCCCCCCcc--cceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 VG--DRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAE--KIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 ~~--h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +.  ..-+|+++..-|.+. .++.|....+|.+.++.+.-++.+.....  .-+-....++.+..+.+...|+.++.|..
T Consensus       387 k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  387 KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV  466 (508)
T ss_pred             cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence            73  446788888888654 58899999999999998877766543221  11222224566778999999999999999


Q ss_pred             cccccceeE
Q 023246          235 QRRQTLAYR  243 (285)
Q Consensus       235 ~~~~~~~~~  243 (285)
                      .++.....+
T Consensus       467 ~sG~LE~tl  475 (508)
T KOG0275|consen  467 LSGKLERTL  475 (508)
T ss_pred             ecCceeeee
Confidence            998776554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.8e-26  Score=187.68  Aligned_cols=208  Identities=18%  Similarity=0.214  Sum_probs=161.2

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEec-CCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~   83 (285)
                      +..+.|+.-..++|||++..|.|.+||+...-.      +      .....+..|...++++.|++.. .+|++|+ ||+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------n------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~  157 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------N------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGT  157 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCcccc------c------hhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence            445778765568999999999999999985210      0      2333448899999999999976 4777865 999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEecc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGD  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h  162 (285)
                      |++||++..                +...++.+....  |..+.|....+.+|+++.+.|.+.+||++.. ++...+.+|
T Consensus       158 vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH  219 (839)
T KOG0269|consen  158 VKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH  219 (839)
T ss_pred             EEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence            999999987                677777775544  9999983346789999999999999999864 467788899


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC--CCCcccceeeccccCCCceEEEe--CCCCeEEEEEecccc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQ  238 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--s~d~~i~vwd~~~~~  238 (285)
                      .++|.++.|+|++.+|||||.|++|+||+..+.+...+  .....++-++.|++.....+++.  ..|-.|+|||+++..
T Consensus       220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            99999999999999999999999999999976553221  12345566666665544444443  347899999999988


Q ss_pred             cceeE
Q 023246          239 TLAYR  243 (285)
Q Consensus       239 ~~~~~  243 (285)
                      .+...
T Consensus       300 IP~~t  304 (839)
T KOG0269|consen  300 IPYAT  304 (839)
T ss_pred             cccee
Confidence            77554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=5.7e-25  Score=184.01  Aligned_cols=226  Identities=17%  Similarity=0.288  Sum_probs=185.8

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..+++..|+.   ..+++++.|++|++|+..++.              ....-+.+|.+.|+++++..-+.+|++|+ |.
T Consensus       209 ~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~--------------~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~  271 (537)
T KOG0274|consen  209 HVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGY--------------LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK  271 (537)
T ss_pred             chhhhheeec---CeEEecCCCceeEEeecccce--------------EEEeeccCCCCCceeEEEecCCCEEEEEecCC
Confidence            3566777773   589999999999999999886              34442389999999999998778999976 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      ++++||..++                .+.+.+.+|...  +.++..   ...++++|+.|.+|++|++.+++.+..+.+|
T Consensus       272 t~rvWd~~sg----------------~C~~~l~gh~st--v~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h  330 (537)
T KOG0274|consen  272 TERVWDCSTG----------------ECTHSLQGHTSS--VRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH  330 (537)
T ss_pred             cEEeEecCCC----------------cEEEEecCCCce--EEEEEc---cCceEeeccCCceEEEEeccCcceEEEeccc
Confidence            9999999998                899999999976  887764   5668888999999999999999999999999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc-ccc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR-QTL  240 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~-~~~  240 (285)
                      ..+|.++..+  +.++++|+.|++|++|++...+ +..+.+|..++.++.....  ..+++|+.|+.|++||+++. +.+
T Consensus       331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~  406 (537)
T KOG0274|consen  331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI  406 (537)
T ss_pred             cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh
Confidence            9999999997  7899999999999999998776 5889999999988744331  58999999999999999998 555


Q ss_pred             eeEee--------eccccccCCCCCcCeEEEeecCCCCC
Q 023246          241 AYRER--------RYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       241 ~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      ..+..        ......+.+...++.|.+++.++++.
T Consensus       407 ~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~  445 (537)
T KOG0274|consen  407 HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC  445 (537)
T ss_pred             hhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence            44422        12244456667777788887666543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.7e-26  Score=171.96  Aligned_cols=220  Identities=11%  Similarity=0.183  Sum_probs=168.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      ++.+|.|++=+|.....+|+|+.||.|+|||+...+              +...+ ..|.+.|+.|++.. +.+|.+|.|
T Consensus        65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tvgdD  128 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTVGDD  128 (433)
T ss_pred             cccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEecCC
Confidence            467899999999655789999999999999999776              44444 89999999999988 567777899


Q ss_pred             CcEEEEEcCCCC----------------------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEE
Q 023246           82 ELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMS  138 (285)
Q Consensus        82 ~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~  138 (285)
                      .+|+.|-+....                      .++...+..|+.....+++.+.-....  |.++.| +|... .|++
T Consensus       129 KtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsILas  205 (433)
T KOG0268|consen  129 KTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSILAS  205 (433)
T ss_pred             cceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchheee
Confidence            999999865432                      222334556666666677777766654  888887 66554 5566


Q ss_pred             ecCCCeEEEEecCCCceEE------------------------------------------EEecccccceEeEEcCCCC
Q 023246          139 GSDCGHLFIWKKKGGKLVR------------------------------------------LMVGDRHVVNQLEPHPHIP  176 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~------------------------------------------~~~~h~~~v~~~~~~p~~~  176 (285)
                      +..|+.|.+||+++++++.                                          ...+|.+.|.+++|+|.|+
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             eccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence            7789999999988776543                                          2346778899999999999


Q ss_pred             eEEEEecCCcEEEEcCCCCCCCCCC--CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          177 MFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       177 ~l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      -|++||.|++|+||..+.+.-..+-  ...+.++++.| +.++.++++||.|+.|++|.....+.+.
T Consensus       286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE-eccccEEEecCCCcceeeeecchhhhcC
Confidence            9999999999999999877543321  12344566655 7788899999999999999877655543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=2.3e-25  Score=183.23  Aligned_cols=211  Identities=16%  Similarity=0.214  Sum_probs=173.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      -+.|++++.+||+ ..++||+.|.+|++||..--.....  ....+-....... -.-...|.|+++||||++||.+- |
T Consensus       454 dgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~g--t~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsLLd  529 (888)
T KOG0306|consen  454 DGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPG--TQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSLLD  529 (888)
T ss_pred             ccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCc--ccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEecc
Confidence            4679999999986 8999999999999999763211000  0000000000011 12356899999999999999985 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .+++||-+.+.                +..-.+.+|.-+  |.++.+ +|+++.++||+.|.+|++|-+.-|.|-..+.+
T Consensus       530 nTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  530 NTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             CeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence            99999999877                677888999977  999998 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      |...|.++.|.|....+.+||.|+.|+-||-..-+ ++.+.+|...+.+++. .+.+++++++|.|.+|++|.....
T Consensus       591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav-~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV-SPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE-cCCCCeEEeccCCceeEeeeccCc
Confidence            99999999999999899999999999999986654 6889999999877765 567779999999999999986554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.3e-25  Score=158.59  Aligned_cols=192  Identities=14%  Similarity=0.210  Sum_probs=156.3

Q ss_pred             cCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           56 LIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        56 ~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      .+..|.++|.++.|+-+|++.++ |+|.+|++|+...+                .+++++.+|...  |..++. +.++.
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------~liktYsghG~E--VlD~~~-s~Dns   72 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------ALIKTYSGHGHE--VLDAAL-SSDNS   72 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------ceeeeecCCCce--eeeccc-ccccc
Confidence            34789999999999999998777 67999999999988                799999999977  999996 88999


Q ss_pred             EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeec
Q 023246          135 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKAN  211 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~  211 (285)
                      .+++|+.|..+.+||+++|+.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.+...   ++.+......+..+.
T Consensus        73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~  152 (307)
T KOG0316|consen   73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID  152 (307)
T ss_pred             ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999997764   334444445554443


Q ss_pred             cccCCCceEEEeCCCCeEEEEEeccccc--------ceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          212 KQGREDHSRITLTPDVIMHVLRLQRRQT--------LAYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ..   ...+++||.||+++.||++.++.        +..+.+++++.....+.-++.+-+++-+.|
T Consensus       153 v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  153 VA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             ec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence            33   33789999999999999998743        334456666665555544545555554444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-24  Score=161.83  Aligned_cols=197  Identities=16%  Similarity=0.190  Sum_probs=154.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE-e
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS-Y   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s-~   79 (285)
                      -++|++++.+.   .++|+|+.|.+|+|||+++..              ....+ -.|.+.|+++.|.++-.  .|++ +
T Consensus        43 ~~sitavAVs~---~~~aSGssDetI~IYDm~k~~--------------qlg~l-l~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   43 AGSITALAVSG---PYVASGSSDETIHIYDMRKRK--------------QLGIL-LSHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             ccceeEEEecc---eeEeccCCCCcEEEEeccchh--------------hhcce-eccccceEEEEecCCcchhheeeec
Confidence            46789999875   699999999999999999775              22222 67899999999999874  5555 5


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .||.|.+|+...-                .++..+++|...  |+.+++ +|.+++.++.+.|+.+++||+-.|+.-..+
T Consensus       105 dDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen  105 DDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             CCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCccceee
Confidence            6999999999766                789999999987  999998 999999999999999999998776543322


Q ss_pred             ec-c--------------------------------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCC
Q 023246          160 VG-D--------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP  199 (285)
Q Consensus       160 ~~-h--------------------------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~  199 (285)
                      .- +                                      ...+.++.|- ++..|++|+.|+.|++||..... +..
T Consensus       166 ~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  166 NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE  244 (362)
T ss_pred             ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCcccee
Confidence            10 0                                      0113333333 34578888889999999988654 567


Q ss_pred             CCCCcccceeeccc-cCCCceEEEeCCCCeEEEEEeccc
Q 023246          200 LPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       200 ~~~~~~~~~~~~~~-~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.+|..++..+... .++..+++++++||.|+|||++..
T Consensus       245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            88898888766532 335679999999999999999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.9e-25  Score=168.53  Aligned_cols=242  Identities=14%  Similarity=0.179  Sum_probs=183.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|+-+.||++| .+||+++.|.+..||.+.....            +.....+.+|..+|..+.||||.++|+++ .+
T Consensus       224 tdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  224 TDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             CCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            5689999999975 9999999999999999875431            24445558999999999999999988885 58


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ..+.+||+.++                ...+.+... ....+.+++| .|+|..+++|+.|+.+..||+. |+.+...++
T Consensus       291 e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g  351 (519)
T KOG0293|consen  291 EVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG  351 (519)
T ss_pred             HheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcccc
Confidence            88999999998                455555433 1233888885 9999999999999999999998 666666665


Q ss_pred             cc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      -+ ..|.+++..+||+++++.+.|..|++++.....-..+.....++... ..+.++++++.--.+..+++||+....++
T Consensus       352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~-~iS~d~k~~LvnL~~qei~LWDl~e~~lv  430 (519)
T KOG0293|consen  352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF-SISKDGKLALVNLQDQEIHLWDLEENKLV  430 (519)
T ss_pred             cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEE-EEcCCCcEEEEEcccCeeEEeecchhhHH
Confidence            33 67999999999999999999999999998765433233233333333 23556778888888999999999976544


Q ss_pred             eeE------------eee-ccccccCCCCCcCeEEEeecCCCCCCCCCCC
Q 023246          241 AYR------------ERR-YNAADFESDEEEGETYLLGFSDSDASSEGGG  277 (285)
Q Consensus       241 ~~~------------~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  277 (285)
                      .+.            .+. .+..-++++++++.||++.-..|+.-..-.|
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            332            122 2334567888899999998877765444433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.9e-25  Score=165.50  Aligned_cols=217  Identities=16%  Similarity=0.267  Sum_probs=173.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++..|+.++.... ..++.+++.|.+.+||.++++.              |+... .+|.+.|++|+|++.+.++++++ 
T Consensus       147 HkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTaSG  210 (481)
T KOG0300|consen  147 HKDGIWHVAADST-QPICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTASG  210 (481)
T ss_pred             cccceeeehhhcC-CcceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEccC
Confidence            4678888888875 4799999999999999999998              54444 89999999999999999999965 


Q ss_pred             CCcEEEEEc------CCCCCCCCCCCCCc----c--------------ccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           81 DELVYLFEK------NMGLGPSPLSLSPE----D--------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        81 d~~i~iwd~------~~~~~~~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      |++-+||..      ..+..+...+-..+    +              ..-..++..|.+|...  |.+..| -..++.+
T Consensus       211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~Q~  287 (481)
T KOG0300|consen  211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQQM  287 (481)
T ss_pred             CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCccee
Confidence            999999983      22221111111000    0              0001245667888876  888885 7889999


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeecccc
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~  214 (285)
                      ++++.|.+..+||+++++++..+.+|....+.++-+|..+++++.+.|.+.++||++...  +..|.+|...+....  +
T Consensus       288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v--F  365 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV--F  365 (481)
T ss_pred             eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE--E
Confidence            999999999999999999999999999999999999999999999999999999998543  456888888876663  3


Q ss_pred             CCCceEEEeCCCCeEEEEEeccccc
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ..+..+++++.|.+|++||+++-+.
T Consensus       366 ~~dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  366 NTDDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             ecCCceeecCCCceEEEeeeccccC
Confidence            4455789999999999999997543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2e-25  Score=184.03  Aligned_cols=203  Identities=15%  Similarity=0.240  Sum_probs=165.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-cC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-ND   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-~d   81 (285)
                      ..|+++.|++..+++|++|++||+|++||++..+.              .. ...+....|+.++|+|.. ..|+++ ..
T Consensus       134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------------~~-t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------------KS-TFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             cceeeeeeccCCccEEEecCCCceEEEEeeecccc--------------cc-cccccchhhhceeeccCCCceEEEecCC
Confidence            46899999999999999999999999999997752              11 125567899999999954 577776 58


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce--EEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~  159 (285)
                      |.+.+||++...               ++...+..|.++  |.++.| +|++.+||||+.|++|+|||+.+++.  +.++
T Consensus       199 G~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw-hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI  260 (839)
T KOG0269|consen  199 GYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW-HPNREWLATGGRDKMVKIWDMTDSRAKPKHTI  260 (839)
T ss_pred             ceEEEeeccCch---------------hHHHHhhcccCc--eEEEee-cCCCceeeecCCCccEEEEeccCCCccceeEE
Confidence            999999998763               567788899987  999996 99999999999999999999886553  4444


Q ss_pred             ecccccceEeEEcCCCCe-EEEEe--cCCcEEEEcCCCCCC--CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 VGDRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      . ...+|..|+|-|..++ |++++  .|..|++||++..-+  .++..|...+..+.|...+...+.+++.||.+..-.+
T Consensus       261 n-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  261 N-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             e-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence            4 2478999999998877 88876  588999999987754  5677788777777777767778999999999887777


Q ss_pred             cccccc
Q 023246          235 QRRQTL  240 (285)
Q Consensus       235 ~~~~~~  240 (285)
                      +....+
T Consensus       340 knat~p  345 (839)
T KOG0269|consen  340 KNATTP  345 (839)
T ss_pred             hcccCh
Confidence            665443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.4e-24  Score=160.82  Aligned_cols=215  Identities=16%  Similarity=0.221  Sum_probs=159.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccc--ccccCCCCCcceEEEEEecCCC-EEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~i~~s~~~~-~l~s   78 (285)
                      +++.|+++.+.+..++++++|+.||.+.+||++...-...  ..-.....|  ...-..+|...|..+.|-|-.. +|.+
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            4688999999998889999999999999999985431000  000000011  2222367999999999999654 7777


Q ss_pred             ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---CcEEEEecCCCeEEEEecCCCc
Q 023246           79 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        79 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      ++ |.+++|||.++.                +....|.-.   ..|++-++ +|-   .-++++|..+-.|++.|+.+|.
T Consensus       120 sSFDhtlKVWDtnTl----------------Q~a~~F~me---~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTL----------------QEAVDFKME---GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             ccccceEEEeecccc----------------eeeEEeecC---ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccCCc
Confidence            65 999999999876                444444422   23666664 553   4578889999999999999999


Q ss_pred             eEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC--CCCC--------------CCCCcccceeeccccCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPP--------------LPDNAEKIMKANKQGRED  217 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~  217 (285)
                      ..+++.+|.+.|.++.|+|...+ |++|+.||.|++||++..  ++..              -..|...+..+.| ..+.
T Consensus       180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~-tSd~  258 (397)
T KOG4283|consen  180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW-TSDA  258 (397)
T ss_pred             ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee-cccc
Confidence            99999999999999999999888 999999999999998632  2222              2234444444444 4456


Q ss_pred             ceEEEeCCCCeEEEEEeccccc
Q 023246          218 HSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      +++++...|..+++|+..+++.
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             hhhhhccCccceEEeecccCcc
Confidence            6888889999999999987643

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.4e-24  Score=169.30  Aligned_cols=220  Identities=16%  Similarity=0.185  Sum_probs=174.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc-CCcCCCCCcc-cccccccC-CCCCcceEEEEEecCCCEEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY-SPISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~~-~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ++-+|.+++++|++ .+.++++.+++|.-|++.+++.. ..++.+.-.. ...+.... .+|...+.+++.++||++|++
T Consensus       141 H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  141 HQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             ccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            45689999999986 89999999999999999998754 2222211011 00111111 389999999999999999999


Q ss_pred             ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      |. |..|.||+..+.                +.++.|.+|...  |.+++| -.....+++++.|+.|++|+++....+.
T Consensus       220 gg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             cCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHHHH
Confidence            75 999999999988                788999999987  999998 6667789999999999999999888999


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ++.+|+..|.++....-++.+-.|+.|+++++|.+.......+.++...+-+.  ..-++..+++||.+|.|.+|++.+.
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv--~~In~~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCV--AFINDEHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeE--EEecccceeeccCCceEEEeeeccc
Confidence            99999999999988877776767779999999999554444455555444333  2345568999999999999999988


Q ss_pred             ccceeE
Q 023246          238 QTLAYR  243 (285)
Q Consensus       238 ~~~~~~  243 (285)
                      +.+...
T Consensus       359 kplf~~  364 (479)
T KOG0299|consen  359 KPLFTS  364 (479)
T ss_pred             CceeEe
Confidence            766554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5.3e-24  Score=158.09  Aligned_cols=210  Identities=15%  Similarity=0.164  Sum_probs=155.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      +...|.+++|||....++++|+.||+||+|++.. +..              .......|.++|.+++|+.+|..++++ 
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~--------------~~ka~~~~~~PvL~v~WsddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL--------------VPKAQQSHDGPVLDVCWSDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcc--------------cchhhhccCCCeEEEEEccCCceEEeec
Confidence            3467899999996557888999999999999986 342              222336789999999999999988885 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec-CCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-PNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      .|+.+++||+.++                 .+..+..|..+  |..+.|.. .....|++|+-|.+|+.||++...++.+
T Consensus        92 ~Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t  152 (347)
T KOG0647|consen   92 CDKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT  152 (347)
T ss_pred             cCCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEecCCCcceeEecccccceeecccCCCCeeee
Confidence            5999999999987                 66778889977  99998743 2345899999999999999997766553


Q ss_pred             Eec-------------------------------------c----cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-
Q 023246          159 MVG-------------------------------------D----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-  196 (285)
Q Consensus       159 ~~~-------------------------------------h----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-  196 (285)
                      +.-                                     +    .-.+.+++..++....+.|+.+|.+-+..+..+. 
T Consensus       153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence            321                                     1    1246778888887778888888888888776542 


Q ss_pred             --CCCCCCCc------ccceeeccc--cCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          197 --FPPLPDNA------EKIMKANKQ--GREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       197 --~~~~~~~~------~~~~~~~~~--~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                        -..++-|.      ..++.++..  .+....+++.+.||++.+||-+.+..+...+
T Consensus       233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~  290 (347)
T KOG0647|consen  233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE  290 (347)
T ss_pred             cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence              12222221      123333322  2345689999999999999988877765543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-25  Score=180.49  Aligned_cols=210  Identities=19%  Similarity=0.300  Sum_probs=168.3

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYL   86 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~i   86 (285)
                      ++..++.++++|+||+.||.|++|++........    .     .....+..|...|..+....+++.|+++ +|-+|++
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s----~-----~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS----T-----PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcc----c-----chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            5666666778999999999999999875431100    0     1122237899999999999999888885 5999999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--ceEE-------
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVR-------  157 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~-------  157 (285)
                      |+.....              --+..++..|.+-  |.++++..++...+++|+-|+.|.+||++++  +.+.       
T Consensus       100 W~~~~~~--------------~~c~stir~H~DY--Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen  100 WNAHKDN--------------TFCMSTIRTHKDY--VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             eecccCc--------------chhHhhhhcccch--heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            9998651              1367788889966  9999975678889999999999999999977  2222       


Q ss_pred             -EEe-cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          158 -LMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       158 -~~~-~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                       .+. ++...|++++.++.+..+++|+..+.+++||+++.+ +..+.+|...+..+.. ..++..++++|+||+|++||+
T Consensus       164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~-~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV-NDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE-cCCCCeEeecCCCceEEeeec
Confidence             222 778899999999999999999999999999998875 6788899888766543 567778999999999999999


Q ss_pred             cccccceeE
Q 023246          235 QRRQTLAYR  243 (285)
Q Consensus       235 ~~~~~~~~~  243 (285)
                      ..++.+..+
T Consensus       243 gqQrCl~T~  251 (735)
T KOG0308|consen  243 GQQRCLATY  251 (735)
T ss_pred             cccceeeeE
Confidence            988776654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-23  Score=151.92  Aligned_cols=211  Identities=11%  Similarity=0.097  Sum_probs=173.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..+++.+.|+.+| .+|++++.|.+..+|-...|+.              +-+. .+|++.|+++..+-+.+.+++|+ |
T Consensus        10 ERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGer--------------lGty-~GHtGavW~~Did~~s~~liTGSAD   73 (327)
T KOG0643|consen   10 ERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGER--------------LGTY-DGHTGAVWCCDIDWDSKHLITGSAD   73 (327)
T ss_pred             ccccceEEecCCC-cEEEEecCCCCceEEEecCCce--------------eeee-cCCCceEEEEEecCCcceeeecccc
Confidence            3589999999986 8999999999999999888873              2222 89999999999999999999975 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-----CCeEEEEecC-----
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK-----  151 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~vwd~~-----  151 (285)
                      .++++||+.++                +.+..++..   .+|..+.| ++++++++...+     .+.|.++|++     
T Consensus        74 ~t~kLWDv~tG----------------k~la~~k~~---~~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~  133 (327)
T KOG0643|consen   74 QTAKLWDVETG----------------KQLATWKTN---SPVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDDSSD  133 (327)
T ss_pred             ceeEEEEcCCC----------------cEEEEeecC---CeeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence            99999999999                677777643   33999998 999999887654     5679999988     


Q ss_pred             --CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCC
Q 023246          152 --GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       152 --~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                        ..+++..+..+.+.++.+-|.|-++.+++|..||.|.+||++++.  +.....|...+..+ ..+++..+++++|.|.
T Consensus       134 ~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  134 IDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL-QFSRDRTYFITGSKDT  212 (327)
T ss_pred             hcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc-cccCCcceEEecccCc
Confidence              445688888888999999999999999999999999999999875  34444566655433 3466777999999999


Q ss_pred             eEEEEEecccccceeEeeecccc
Q 023246          228 IMHVLRLQRRQTLAYRERRYNAA  250 (285)
Q Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~  250 (285)
                      +-++||+.+-+.+.......+..
T Consensus       213 takl~D~~tl~v~Kty~te~PvN  235 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTERPVN  235 (327)
T ss_pred             cceeeeccceeeEEEeeeccccc
Confidence            99999999988877764443333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=162.65  Aligned_cols=204  Identities=18%  Similarity=0.278  Sum_probs=171.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ..+.++...|. ...++||+.|..+.++|..+++.              +.. +.+|...|+.+.|+|+...++++ .|.
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~--------------l~~-~~Gh~kki~~v~~~~~~~~v~~aSad~  283 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQI--------------LAT-LKGHTKKITSVKFHKDLDTVITASADE  283 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecchhhh--------------hhh-ccCcceEEEEEEeccchhheeecCCcc
Confidence            46778888886 48999999999999999998863              222 38999999999999999888886 499


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec-
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-  161 (285)
                      .|+||.....                ........|..+  |+.+.. +|.|.||++++.|+...+.|++++..+..... 
T Consensus       284 ~i~vws~~~~----------------s~~~~~~~h~~~--V~~ls~-h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  284 IIRVWSVPLS----------------SEPTSSRPHEEP--VTGLSL-HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             eEEeeccccc----------------cCcccccccccc--ceeeee-ccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence            9999999776                466677788877  999996 99999999999999999999999998866553 


Q ss_pred             -ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          162 -DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       162 -h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                       ..-.+++.+|+|||..|.+|..|+.++|||+..+. +..|++|.+++..+.. +.++.++++++.|+.|++||++.-..
T Consensus       345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F-sENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF-SENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe-ccCceEEEEEecCCeEEEEEehhhcc
Confidence             22458999999999999999999999999997775 6789999999877744 44566888999999999999998665


Q ss_pred             ceeE
Q 023246          240 LAYR  243 (285)
Q Consensus       240 ~~~~  243 (285)
                      ...+
T Consensus       424 ~kt~  427 (506)
T KOG0289|consen  424 FKTI  427 (506)
T ss_pred             ccee
Confidence            5444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=5.6e-24  Score=181.57  Aligned_cols=216  Identities=17%  Similarity=0.306  Sum_probs=169.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC---cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+.|+|+.|+|+| .+||+|+.|+.|.||.....   ..-..-.....+..+.....+.+|...|..++|+|++.+|+++
T Consensus        69 ~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   69 DGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV  147 (942)
T ss_pred             cCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence            5689999999986 99999999999999998741   1111111233445555666668999999999999999999996


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-  157 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-  157 (285)
                      + |++|.||+..+.                +.+.++.+|...  |..+.| +|-|+||++-++|++|++|++.+....+ 
T Consensus       148 s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             cccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEcccceeeEe
Confidence            5 999999999987                799999999977  999996 9999999999999999999965422111 


Q ss_pred             ---------------------------------------------------EEecccccceEeEEcCC-----CC-----
Q 023246          158 ---------------------------------------------------LMVGDRHVVNQLEPHPH-----IP-----  176 (285)
Q Consensus       158 ---------------------------------------------------~~~~h~~~v~~~~~~p~-----~~-----  176 (285)
                                                                         .|-+|..++.++.|+|.     .+     
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~  288 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST  288 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence                                                               45589999999999972     11     


Q ss_pred             -------eEEEEecCCcEEEEcCCCCCC-CCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          177 -------MFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       177 -------~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                             .+|+|+.|++|.||.....+. .... -....+....| ++++..++++|-||+|.++.++....
T Consensus       289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsW-spdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSW-SPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeE-cCCCCeEEEEecCCeEEEEEcchHHh
Confidence                   478999999999999855542 2221 13455556655 66777899999999999999987644

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.5e-24  Score=178.38  Aligned_cols=197  Identities=13%  Similarity=0.176  Sum_probs=151.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEec-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~-   80 (285)
                      -+.|..++||..  ++|++++.|++||||++...+              |+..  ..|..-|+||+|+| |.++|++|+ 
T Consensus       369 t~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~--------------CL~~--F~HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  369 TADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKE--------------CLKV--FSHNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             chhheecccccC--CeeEeccccccEEeecCCCcc--------------eeeE--EecCCeeEEEEecccCCCcEeeccc
Confidence            357889999994  699999999999999999877              3333  47999999999999 557999987 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |+.|+||++...                 .+.....-..  -|++++| .|+|++.+.|+.+|.+++|+....+....+.
T Consensus       431 D~KvRiWsI~d~-----------------~Vv~W~Dl~~--lITAvcy-~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  431 DGKVRLWSISDK-----------------KVVDWNDLRD--LITAVCY-SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             ccceEEeecCcC-----------------eeEeehhhhh--hheeEEe-ccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            999999999765                 3333333333  3999998 9999999999999999999999777665443


Q ss_pred             c--c------cccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC-CCCCCCCcccce-eeccccCCCceEEEeCCCCeE
Q 023246          161 G--D------RHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM-KANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       161 ~--h------~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~d~~i  229 (285)
                      -  |      ...|+.+.|.|... .++..+.|..|||+|.+... +..+++....-- ..+....++.++++++.|..|
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV  570 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence            1  1      23799999998655 37777789999999997765 355655433221 111233478899999999999


Q ss_pred             EEEEeccc
Q 023246          230 HVLRLQRR  237 (285)
Q Consensus       230 ~vwd~~~~  237 (285)
                      ++|++...
T Consensus       571 YiW~~~~~  578 (712)
T KOG0283|consen  571 YIWKNDSF  578 (712)
T ss_pred             EEEeCCCC
Confidence            99998544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=163.17  Aligned_cols=197  Identities=18%  Similarity=0.221  Sum_probs=158.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|+.+.|+|+. ..+++++.|..|+||......              ++ .....|..+|+.+..+|.|.||+++ +|
T Consensus       261 ~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d  324 (506)
T KOG0289|consen  261 TKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------EP-TSSRPHEEPVTGLSLHPTGEYLLSASND  324 (506)
T ss_pred             ceEEEEEEeccch-hheeecCCcceEEeecccccc--------------Cc-cccccccccceeeeeccCCcEEEEecCC
Confidence            3578899999975 899999999999999987654              22 2337899999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++....|++++                ..+...........+++.+| +|||..|.+|..||.|++||+.+...+..|.+
T Consensus       325 ~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg  387 (506)
T KOG0289|consen  325 GTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG  387 (506)
T ss_pred             ceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence            99999999988                45555544334345899998 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcc-cceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE-KIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      |.++|..++|+.+|.+|++++.|+.|++||++..+ +.++..... .+..+. ....+.+++.++.+-+|++++
T Consensus       388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~-fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS-FDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE-EcCCCCeEEeecceeEEEEEe
Confidence            99999999999999999999999999999998765 344432222 233332 234566888887777777766

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-22  Score=151.76  Aligned_cols=233  Identities=13%  Similarity=0.146  Sum_probs=181.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-   80 (285)
                      +++|+++.|+++| .++++++.|.+++|||..+++.              ...+ ..+...+..++|..... .+.++. 
T Consensus        14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~--------------~~ti-~skkyG~~~~~Fth~~~~~i~sStk   77 (311)
T KOG1446|consen   14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQ--------------VKTI-NSKKYGVDLACFTHHSNTVIHSSTK   77 (311)
T ss_pred             CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCce--------------eeEe-ecccccccEEEEecCCceEEEccCC
Confidence            5789999999986 8999999999999999999873              3333 44556788889987665 444444 


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                       |.+|+..++...                +.++.|.+|...  |.+++. +|-+..+++++.|++|++||++..++...+
T Consensus        78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen   78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence             899999999988                899999999976  999997 999999999999999999999988887776


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC---CCCCCCCC--cccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT---DFPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ...  .-...+|+|+|-++|++.....|++||++.-   ....+...  ...-......++++++++..+..+.+++.|.
T Consensus       139 ~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  139 NLS--GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA  216 (311)
T ss_pred             ecC--CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence            643  3344789999999999998889999999754   22332221  1222233334667788888888999999998


Q ss_pred             cccccceeE-------------eeeccccccCCCCCcCeEEEeecCCCCCC
Q 023246          235 QRRQTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSDAS  272 (285)
Q Consensus       235 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  272 (285)
                      -++..+..+             .+.|+..-+.+++++|++.+++.+.|..-
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            777655544             34566667778888899999998777543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2e-22  Score=144.36  Aligned_cols=204  Identities=16%  Similarity=0.186  Sum_probs=164.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CCEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLI   77 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~   77 (285)
                      +++.|.|.+|+|.+ +++|+|+.|++|++..+....+...          ....-+.-|.+.|..++|-.+    +.+|+
T Consensus        88 hkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             cCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            47899999999986 9999999999999977654332110          111222568999999999754    35888


Q ss_pred             Ee--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246           78 SY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        78 s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      ++  .|..|++-|...+                +..+.+.+|+.-  |.++-  +-++-.+++|++|.+|++||++-..+
T Consensus       157 s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilaly--swn~~m~~sgsqdktirfwdlrv~~~  216 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILALY--SWNGAMFASGSQDKTIRFWDLRVNSC  216 (350)
T ss_pred             ecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEEE--EecCcEEEccCCCceEEEEeeeccce
Confidence            85  3888888898888                788999999976  88874  44788999999999999999998888


Q ss_pred             EEEEec--c-----cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCC
Q 023246          156 VRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       156 ~~~~~~--h-----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      +.++..  |     .+.|.+++..|.|++|++|-.|....+||++++. ++.+..|...+.++. .++...++++++.|.
T Consensus       217 v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-fsp~a~yllt~syd~  295 (350)
T KOG0641|consen  217 VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-FSPGAHYLLTCSYDM  295 (350)
T ss_pred             eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-eCCCceEEEEecccc
Confidence            877742  2     3579999999999999999999999999999887 577877887776653 355667999999999


Q ss_pred             eEEEEEeccc
Q 023246          228 IMHVLRLQRR  237 (285)
Q Consensus       228 ~i~vwd~~~~  237 (285)
                      .|++-|++..
T Consensus       296 ~ikltdlqgd  305 (350)
T KOG0641|consen  296 KIKLTDLQGD  305 (350)
T ss_pred             eEEEeecccc
Confidence            9999999863

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.4e-24  Score=152.45  Aligned_cols=227  Identities=12%  Similarity=0.136  Sum_probs=170.6

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEec-CCcE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN-DELV   84 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~-d~~i   84 (285)
                      .+..+-- +.+|||+++|++|+|+..+.....            .+...+.+|.++|+.++|..  .|.+||+++ ||+|
T Consensus        16 da~lDyy-gkrlATcsSD~tVkIf~v~~n~~s------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen   16 DAQLDYY-GKRLATCSSDGTVKIFEVRNNGQS------------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             Hhhhhhh-cceeeeecCCccEEEEEEcCCCCc------------eeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            3333333 379999999999999999865411            22222389999999999987  788999976 9999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCC-c--eEEEE
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K--LVRLM  159 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~-~--~~~~~  159 (285)
                      .||.-..+              ++.....+..|...  +++++| .|.  |-.|++++.||.|.+.+.+.. .  .....
T Consensus        83 IiWke~~g--------------~w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   83 IIWKEENG--------------RWTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             EEEecCCC--------------chhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence            99998776              34566677788876  999996 664  567899999999999997754 2  23345


Q ss_pred             ecccccceEeEEcCC---C-----------CeEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCC---Cce
Q 023246          160 VGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGRE---DHS  219 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~---~-----------~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~  219 (285)
                      ..|.-.|++++|.|.   |           +.|++|+.|..|+||+.....   -.++.+|...+....|++..   ...
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence            689999999999986   4           469999999999999998754   24588899999888887763   458


Q ss_pred             EEEeCCCCeEEEEEeccccc-------------ceeEeeeccccccCCCCCcCeEEEe
Q 023246          220 RITLTPDVIMHVLRLQRRQT-------------LAYRERRYNAADFESDEEEGETYLL  264 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~v~~~  264 (285)
                      +++++.||++.||..+....             +-...++..+..|+....++.+.++
T Consensus       226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             eEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            89999999999998764311             1112345555556655555556555

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.6e-24  Score=167.60  Aligned_cols=200  Identities=16%  Similarity=0.196  Sum_probs=154.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..|.+++|+|..+.-+|+.+. -.+.||+..+....              +.+ ......|.++.|-.||++|++|. .|
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~--------------k~~-srFk~~v~s~~fR~DG~LlaaGD~sG   90 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR--------------KTF-SRFKDVVYSVDFRSDGRLLAAGDESG   90 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhh--------------hhH-HhhccceeEEEeecCCeEEEccCCcC
Confidence            478999999988877777665 57899998876522              111 34467899999999999999986 89


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      .|+|||..+.                ..++.+.+|+.+  +....|...++..+++|++|+.+++||+.+......+.+|
T Consensus        91 ~V~vfD~k~r----------------~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h  152 (487)
T KOG0310|consen   91 HVKVFDMKSR----------------VILRQLYAHQAP--VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH  152 (487)
T ss_pred             cEEEeccccH----------------HHHHHHhhccCc--eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence            9999997654                467888999977  8888883345677888999999999999988877788999


Q ss_pred             cccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          163 RHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       163 ~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      +..|.+.+|+|... +++|||.||+|++||++...  +.++ .|..++-.....+ .+.. ++......++|||+.++.+
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lp-sgs~-iasAgGn~vkVWDl~~G~q  229 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALP-SGSL-IASAGGNSVKVWDLTTGGQ  229 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcC-CCCE-EEEcCCCeEEEEEecCCce
Confidence            99999999999655 69999999999999998763  2333 3666654443322 2233 4444567899999996544


Q ss_pred             c
Q 023246          240 L  240 (285)
Q Consensus       240 ~  240 (285)
                      +
T Consensus       230 l  230 (487)
T KOG0310|consen  230 L  230 (487)
T ss_pred             e
Confidence            3

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9.5e-24  Score=171.25  Aligned_cols=227  Identities=16%  Similarity=0.215  Sum_probs=172.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-ecCCCEEEEec-CC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYN-DE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~~~l~s~~-d~   82 (285)
                      -|+.++...+ ++.|++++.|-+|++|+...+.            .+|...+ ..|...|.|+++ .++..++|+|. |+
T Consensus        75 WVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   75 WVNDIILCGN-GKTLISASSDTTVKVWNAHKDN------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             HHhhHHhhcC-CCceEEecCCceEEEeecccCc------------chhHhhh-hcccchheeeeecccCceeEEecCCCc
Confidence            3555555554 4799999999999999998653            2266666 889999999999 67777888865 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .|.+||++++......++..      .....+. ++..+  |++++. ++.+..+++|+..+.+++||.++++.+..+.+
T Consensus       141 ~IflWDin~~~~~l~~s~n~------~t~~sl~sG~k~s--iYSLA~-N~t~t~ivsGgtek~lr~wDprt~~kimkLrG  211 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNN------VTVNSLGSGPKDS--IYSLAM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG  211 (735)
T ss_pred             cEEEEEccCcchhhhhhccc------cccccCCCCCccc--eeeeec-CCcceEEEecCcccceEEeccccccceeeeec
Confidence            99999999773200000000      0111222 66655  999996 89999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |+..|..+..+++|..+++++.||+|++||+..++ +.++..|...+-.... .+.-..+++|+.|+.|..-|+++....
T Consensus       212 HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~-~~sf~~vYsG~rd~~i~~Tdl~n~~~~  290 (735)
T KOG0308|consen  212 HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS-SPSFTHVYSGGRDGNIYRTDLRNPAKS  290 (735)
T ss_pred             cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee-CCCcceEEecCCCCcEEecccCCchhh
Confidence            99999999999999999999999999999997765 6777777777544432 344558999999999999999986443


Q ss_pred             eeE-eeeccccccCCC
Q 023246          241 AYR-ERRYNAADFESD  255 (285)
Q Consensus       241 ~~~-~~~~~~~~~~~~  255 (285)
                      ..+ +.......+..+
T Consensus       291 tlick~daPv~~l~~~  306 (735)
T KOG0308|consen  291 TLICKEDAPVLKLHLH  306 (735)
T ss_pred             eEeecCCCchhhhhhc
Confidence            333 333333344444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=2.9e-23  Score=171.01  Aligned_cols=232  Identities=12%  Similarity=0.150  Sum_probs=174.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc--------------------cc-----ccccc
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD--------------------TF-----CPRHL   56 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~   56 (285)
                      ++..|.++++|.++ ..+++| ..++++||+..+.+++..+...-.+.                    -|     .....
T Consensus       372 HR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et  449 (888)
T KOG0306|consen  372 HRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET  449 (888)
T ss_pred             chhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence            46678888888864 444444 45788888888887766655321110                    00     11223


Q ss_pred             CCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246           57 IGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        57 ~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      ..+|.+.|+.++.+|+++.+++++ |.+|++||...-.. .+.+..  ..-+.+..+++.-. +.  |.++.+ +|++++
T Consensus       450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~--k~lsl~~~rtLel~-dd--vL~v~~-Spdgk~  522 (888)
T KOG0306|consen  450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK--KVLSLKHTRTLELE-DD--VLCVSV-SPDGKL  522 (888)
T ss_pred             hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc--eeeeeccceEEecc-cc--EEEEEE-cCCCcE
Confidence            368999999999999999888865 99999999864421 111000  00111222333322 22  999998 999999


Q ss_pred             EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeecccc
Q 023246          136 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQG  214 (285)
Q Consensus       136 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~  214 (285)
                      ++.+--|.+|++|-+.+-+...++.+|.-||.+|.++|++++++||+.|+.|++|-+.-+.. ..+.+|...+.++...+
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999987764 67888999988886644


Q ss_pred             CCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                       ....+.+++.|+.++-||-.....++.+
T Consensus       603 -~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  603 -KTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             -cceeEEEecCcceEEeechhhhhhheee
Confidence             6678899999999999998776665554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=151.92  Aligned_cols=190  Identities=15%  Similarity=0.196  Sum_probs=149.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..|-.++|+|.++.+|++++.|.+|++||++.+++.              ..+  ...+.=.-+.|+|+|.+++.++ |.
T Consensus        65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~--------------~~i--~~~~eni~i~wsp~g~~~~~~~kdD  128 (313)
T KOG1407|consen   65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT--------------ARI--ETKGENINITWSPDGEYIAVGNKDD  128 (313)
T ss_pred             cchhhheeCCCCCcceEEecCCceEEEEEeccCcEE--------------EEe--eccCcceEEEEcCCCCEEEEecCcc
Confidence            357789999998999999999999999999988742              222  1122334578999998888864 88


Q ss_pred             cEEEEEcCCCCCCC-------------------------CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246           83 LVYLFEKNMGLGPS-------------------------PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  137 (285)
Q Consensus        83 ~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  137 (285)
                      .|...|.++.....                         ...+.+-..+..+++..++.|...  ..++.| +|+|++++
T Consensus       129 ~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn--CicI~f-~p~GryfA  205 (313)
T KOG1407|consen  129 RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN--CICIEF-DPDGRYFA  205 (313)
T ss_pred             cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc--eEEEEE-CCCCceEe
Confidence            88888887654111                         112222224556778888899966  899998 99999999


Q ss_pred             EecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccc
Q 023246          138 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQ  213 (285)
Q Consensus       138 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~  213 (285)
                      +|+.|..+.+||++.--+++.+..+.-+|..+.|+.+|++||++++|..|-|=+..++. +.+++ +.++.+.+.|-
T Consensus       206 ~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWH  281 (313)
T KOG1407|consen  206 TGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWH  281 (313)
T ss_pred             eccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEec
Confidence            99999999999999888999999999999999999999999999999999998887775 44553 55566666663

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=1.7e-23  Score=165.72  Aligned_cols=222  Identities=11%  Similarity=0.107  Sum_probs=159.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEec
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~   80 (285)
                      ...|++++|++.+ ..|++.+..-..+|+|-...+.....+.++.+..  .... ++|...+++.+|+|..+  +|.++.
T Consensus       214 ~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~D--m~nT-KGHia~lt~g~whP~~k~~FlT~s~  289 (641)
T KOG0772|consen  214 THQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRD--MYNT-KGHIAELTCGCWHPDNKEEFLTCSY  289 (641)
T ss_pred             ccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhh--hhcc-CCceeeeeccccccCcccceEEecC
Confidence            3578999999986 6777777778999999876665555554444432  2222 79999999999999875  555567


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc---cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc--e
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L  155 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~  155 (285)
                      |++++||++....               +..+.+...   .....++.++| +++++.|++|..||.|.+|+.....  +
T Consensus       290 DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~tsC~~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p  353 (641)
T KOG0772|consen  290 DGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPVTSCAW-NRDGKLIAAGCLDGSIQIWDKGSRTVRP  353 (641)
T ss_pred             CCcEEEEecCCch---------------hheeEEeeccCCCcccCceeeec-CCCcchhhhcccCCceeeeecCCccccc
Confidence            9999999998662               333444321   11233788886 9999999999999999999975332  2


Q ss_pred             -EEEEecccc--cceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeec-cccCCCceEEEeCC----
Q 023246          156 -VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKAN-KQGREDHSRITLTP----  225 (285)
Q Consensus       156 -~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~----  225 (285)
                       ...-.+|..  .|+++.|+++|++|++-+.|+++++||+++.+  +....+.....-..+ +.+++.+++++|+.    
T Consensus       354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~  433 (641)
T KOG0772|consen  354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG  433 (641)
T ss_pred             ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence             233346776  89999999999999999999999999998765  333333222222222 24556778888765    


Q ss_pred             --CCeEEEEEecccccceeEe
Q 023246          226 --DVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       226 --d~~i~vwd~~~~~~~~~~~  244 (285)
                        .|.+++||..+...++.+.
T Consensus       434 ~~~g~L~f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  434 MTAGTLFFFDRMTLDTVYKID  454 (641)
T ss_pred             CCCceEEEEeccceeeEEEec
Confidence              3889999988777666653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=1.5e-23  Score=151.98  Aligned_cols=200  Identities=15%  Similarity=0.215  Sum_probs=165.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d   81 (285)
                      +.-|.+++|+.|. ++|+||+.++.+||||+...+              .+..-+.+|++.|..+.|....+.+++ +.|
T Consensus       100 khivk~~af~~ds-~~lltgg~ekllrvfdln~p~--------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd  164 (334)
T KOG0278|consen  100 KHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPK--------------APPKEISGHTGGIRTVLWCHEDKCILSSADD  164 (334)
T ss_pred             hheeeeEEecccc-hhhhccchHHHhhhhhccCCC--------------CCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence            4568899999985 899999999999999998776              334444899999999999998887777 569


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|++||.+++                ..++++.... +  |+++.+ +++|+++.++. .+.|.+||..+..++..++.
T Consensus       165 ~tVRLWD~rTg----------------t~v~sL~~~s-~--VtSlEv-s~dG~ilTia~-gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  165 KTVRLWDHRTG----------------TEVQSLEFNS-P--VTSLEV-SQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             CceEEEEeccC----------------cEEEEEecCC-C--Ccceee-ccCCCEEEEec-CceeEEeccccccceeeccC
Confidence            99999999998                6777776432 3  899997 89998776654 68899999999888887764


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCC-CCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                       ...|.+...+|+...++.|++|..++.||..++. +.. .++|..++.++.. ++++...++||.||+|++|.....+.
T Consensus       224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF-SPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE-CCCCceeeccCCCceEEEEEecCCCc
Confidence             3578999999999999999999999999998876 333 3788888877754 66778889999999999998877654


Q ss_pred             c
Q 023246          240 L  240 (285)
Q Consensus       240 ~  240 (285)
                      .
T Consensus       302 ~  302 (334)
T KOG0278|consen  302 Y  302 (334)
T ss_pred             h
Confidence            3

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=7.6e-24  Score=158.07  Aligned_cols=228  Identities=11%  Similarity=0.162  Sum_probs=163.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      -.+|+++.|+|.. .+|++|+.|++|+++|+......             ..........+|.++.|+|.|.+|+.|. -
T Consensus       172 ~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saK-------------rA~K~~qd~~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  172 VDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAK-------------RAFKVFQDTEPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             cCcccceeecchh-heEEeccCCCeEEEEecccHHHH-------------HHHHHhhccceeeeEeecCCCceEEEecCC
Confidence            4589999999975 89999999999999999754311             1111123356899999999999999986 6


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceE---eecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV---YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      .++++||+++.                ++...   -..|...  |+++.| ++.+++.++++.||.|++||--+++++.+
T Consensus       238 p~~rlYdv~T~----------------QcfvsanPd~qht~a--i~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv~t  298 (430)
T KOG0640|consen  238 PTLRLYDVNTY----------------QCFVSANPDDQHTGA--ITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCVRT  298 (430)
T ss_pred             CceeEEeccce----------------eEeeecCcccccccc--eeEEEe-cCCccEEEEeccCCcEEeeccccHHHHHH
Confidence            88999999876                22111   1245555  999998 99999999999999999999888999988


Q ss_pred             Ee-ccc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCc---ccceeeccccC-CCceEEEe-CCCCeEE
Q 023246          159 MV-GDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA---EKIMKANKQGR-EDHSRITL-TPDVIMH  230 (285)
Q Consensus       159 ~~-~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-s~d~~i~  230 (285)
                      +. +|. ..|.+..|..+++++++.+.|..+++|.+.+++ +....+..   .........+. ...+++.- -..+.+.
T Consensus       299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc  378 (430)
T KOG0640|consen  299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC  378 (430)
T ss_pred             HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCcee
Confidence            85 565 579999999999999999999999999998775 34443321   11111111122 23343332 2236778


Q ss_pred             EEEeccc-----------ccceeEeeeccccccCCCCCcCeEEE
Q 023246          231 VLRLQRR-----------QTLAYRERRYNAADFESDEEEGETYL  263 (285)
Q Consensus       231 vwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~  263 (285)
                      -||.++.           ....++.++|....+...+++-+.-+
T Consensus       379 sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF  422 (430)
T KOG0640|consen  379 SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF  422 (430)
T ss_pred             eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence            8887764           34456677887777766666544433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.4e-23  Score=160.42  Aligned_cols=212  Identities=12%  Similarity=0.123  Sum_probs=167.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ++|.+++-+|.| .+|+.|+..|.+++|.+.+|.++.              .+ .+|=.+|+++.|+.||.+|+++ .||
T Consensus        82 g~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~--------------v~-~aHYQ~ITcL~fs~dgs~iiTgskDg  145 (476)
T KOG0646|consen   82 GPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLN--------------VL-SAHYQSITCLKFSDDGSHIITGSKDG  145 (476)
T ss_pred             cceeeeecCCCc-eEEEeecccCcEEEEEeccccHHH--------------HH-HhhccceeEEEEeCCCcEEEecCCCc
Confidence            579999999975 888888899999999999997432              22 7888999999999999999996 599


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      .|.+|.+..-..       ...-...+..+.|..|.-+  |+++.+ .+  ...++++++.|.++++||+..+.++.++.
T Consensus       146 ~V~vW~l~~lv~-------a~~~~~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~  215 (476)
T KOG0646|consen  146 AVLVWLLTDLVS-------ADNDHSVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT  215 (476)
T ss_pred             cEEEEEEEeecc-------cccCCCccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence            999999865421       1111134677889999976  998876 43  45689999999999999999999988877


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-----------------CCCCCCCcc--cceeeccccCCCceEE
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE--KIMKANKQGREDHSRI  221 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~~  221 (285)
                      - ...+.+++.+|.+..+..|+.+|.|.+.++....                 ...+.+|..  .+.++. .+.++.+++
T Consensus       216 f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-is~DgtlLl  293 (476)
T KOG0646|consen  216 F-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-ISTDGTLLL  293 (476)
T ss_pred             c-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-EecCccEEE
Confidence            4 4689999999999999999999999887753221                 123445555  444443 356777999


Q ss_pred             EeCCCCeEEEEEecccccceeE
Q 023246          222 TLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      +|+.||.+.|||+.+++.+..+
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHH
Confidence            9999999999999988766554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.6e-24  Score=177.67  Aligned_cols=202  Identities=18%  Similarity=0.274  Sum_probs=169.9

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i   84 (285)
                      |.++..-. ..+.+++|+.|..+-+|.+....              +... +.+|..+|.++.|++...+|++|. +|+|
T Consensus        31 v~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsasgti   94 (825)
T KOG0267|consen   31 VGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSASGTI   94 (825)
T ss_pred             hceeeeec-cceeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhcccccCCce
Confidence            34444423 24789999999999999987543              2222 389999999999999999988875 9999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      ++||+...                +.++++.+|...  +..+.| +|-+.|+++|+.|+.+++||.+...+.+.+.+|..
T Consensus        95 K~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   95 KVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             eeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            99999987                788999999987  999997 99999999999999999999998889999999999


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .|..+.|+|+|++++.++.|.+++|||+..+++ ..+..|...+..+. ..+..-++.+|+.|+++++||+++.+.+...
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeeccceeEEeecc
Confidence            999999999999999999999999999988875 67887888876665 2333447788999999999999977665444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=1.2e-23  Score=152.52  Aligned_cols=232  Identities=15%  Similarity=0.195  Sum_probs=183.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +++.|++...+.+ ..+.|+++.|-+-+|||.-++..+..                ..|..-|.+++|+.|.++|++| .
T Consensus        58 hkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhs----------------f~hkhivk~~af~~ds~~lltgg~  120 (334)
T KOG0278|consen   58 HKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHS----------------FEHKHIVKAVAFSQDSNYLLTGGQ  120 (334)
T ss_pred             cCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhh----------------hhhhheeeeEEecccchhhhccch
Confidence            4678888888884 58899999999999999999873322                3677789999999999998886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++.++|||++...               .+...+.+|...  |..+-| ....+.+++.++|++|++||.+++..+.++.
T Consensus       121 ekllrvfdln~p~---------------App~E~~ghtg~--Ir~v~w-c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  121 EKLLRVFDLNRPK---------------APPKEISGHTGG--IRTVLW-CHEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             HHHhhhhhccCCC---------------CCchhhcCCCCc--ceeEEE-eccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            9999999998764               466788899977  999986 7888889998999999999999999999988


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      - ..+|+++.++++|++|.++- -+.|.+||...-.+ .... ....+ ......+....+++|..|..++.||..++..
T Consensus       183 ~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV-~SASL~P~k~~fVaGged~~~~kfDy~TgeE  258 (334)
T KOG0278|consen  183 F-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNV-ESASLHPKKEFFVAGGEDFKVYKFDYNTGEE  258 (334)
T ss_pred             c-CCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Ccccc-ccccccCCCceEEecCcceEEEEEeccCCce
Confidence            4 57899999999998876654 56899999977654 2222 11112 1112234456899999999999999988754


Q ss_pred             cee-----------EeeeccccccCCCCCcCeEEEeecCCCCCC
Q 023246          240 LAY-----------RERRYNAADFESDEEEGETYLLGFSDSDAS  272 (285)
Q Consensus       240 ~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  272 (285)
                      +..           +.++|++...++++++|.+.++-...++-.
T Consensus       259 i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  259 IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            433           367888888888888888888876665543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=6.3e-23  Score=160.20  Aligned_cols=198  Identities=13%  Similarity=0.172  Sum_probs=155.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      +...|.+++.+||+ .+||+|+.|..|.||+..+.+              .++. +.+|.+.|.+++|-.....+.+ +.
T Consensus       201 h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~e--------------hv~~-~~ghr~~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  201 HVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLE--------------HVKV-FKGHRGAVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             ccceeEEEEEcCCC-cEEEecCCCceEEEecCcccc--------------hhhc-ccccccceeeeeeecCccceeeeec
Confidence            34678999999986 999999999999999999986              2333 3899999999999987766666 56


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |..|++|++...                ..+.++.+|++.  |.++.. ..-++.+-.|+.|+++++|++.. +.-..+.
T Consensus       265 Drsvkvw~~~~~----------------s~vetlyGHqd~--v~~Ida-L~reR~vtVGgrDrT~rlwKi~e-esqlifr  324 (479)
T KOG0299|consen  265 DRSVKVWSIDQL----------------SYVETLYGHQDG--VLGIDA-LSRERCVTVGGRDRTVRLWKIPE-ESQLIFR  324 (479)
T ss_pred             CCceEEEehhHh----------------HHHHHHhCCccc--eeeech-hcccceEEeccccceeEEEeccc-cceeeee
Confidence            999999999877                688899999987  999986 55666777777999999999953 3344567


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC-CCc-----------ccceeeccccCCCceEEEeCCCC
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNA-----------EKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      +|.+.+.|++|-.+ ..|++|+.+|.|.+|++...++ .... .|.           .++..+. ..+...++++|+.+|
T Consensus       325 g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sdL~asGS~~G  402 (479)
T KOG0299|consen  325 GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSDLLASGSWSG  402 (479)
T ss_pred             CCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCceEEecCCCC
Confidence            88889999999754 5789999999999999866552 1111 010           1222222 234567999999999


Q ss_pred             eEEEEEeccc
Q 023246          228 IMHVLRLQRR  237 (285)
Q Consensus       228 ~i~vwd~~~~  237 (285)
                      .|++|-+..+
T Consensus       403 ~vrLW~i~~g  412 (479)
T KOG0299|consen  403 CVRLWKIEDG  412 (479)
T ss_pred             ceEEEEecCC
Confidence            9999998876

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.2e-23  Score=166.87  Aligned_cols=196  Identities=14%  Similarity=0.153  Sum_probs=162.9

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEE
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF   87 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iw   87 (285)
                      ++|+..  +.||+|. ...|.+|+..+++..               .+..-+...|+++.|+++|.+|+.|. +|.|.||
T Consensus       183 ldWss~--n~laVal-g~~vylW~~~s~~v~---------------~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iw  244 (484)
T KOG0305|consen  183 LDWSSA--NVLAVAL-GQSVYLWSASSGSVT---------------ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIW  244 (484)
T ss_pred             hhcccC--CeEEEEe-cceEEEEecCCCceE---------------EeEecCCCceEEEEECCCCCEEEEeecCCeEEEE
Confidence            578863  5777665 468999999988622               11122377899999999999999975 9999999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-Eeccccc
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVGDRHV  165 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~h~~~  165 (285)
                      |....                +.+..+.+ |...  |.+++| .  +..+.+|+.++.|..+|++..+.... +.+|...
T Consensus       245 D~~~~----------------k~~~~~~~~h~~r--vg~laW-~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe  303 (484)
T KOG0305|consen  245 DVKEQ----------------KKTRTLRGSHASR--VGSLAW-N--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE  303 (484)
T ss_pred             ehhhc----------------cccccccCCcCce--eEEEec-c--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence            99887                67788887 7755  999996 4  77899999999999999998876555 8899999


Q ss_pred             ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEe--CCCCeEEEEEeccccccee
Q 023246          166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~d~~i~vwd~~~~~~~~~  242 (285)
                      |..++|++++.++|+|+.|+.+.|||..... ...+..|...+..+.|++....+|++|  +.|+.|++||..++..+..
T Consensus       304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             eeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            9999999999999999999999999995544 577888999999999999888888884  6699999999988765554


Q ss_pred             E
Q 023246          243 R  243 (285)
Q Consensus       243 ~  243 (285)
                      +
T Consensus       384 v  384 (484)
T KOG0305|consen  384 V  384 (484)
T ss_pred             c
Confidence            4

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1e-22  Score=155.46  Aligned_cols=218  Identities=18%  Similarity=0.221  Sum_probs=161.5

Q ss_pred             ccceeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCc-ccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe
Q 023246            3 SIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~   79 (285)
                      .+.++.+.-++.+ ..+.|+-+..|.|+||++...- .+...+....-..+.+.....+|...-+++.|||-.. .|++|
T Consensus       151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG  230 (440)
T KOG0302|consen  151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG  230 (440)
T ss_pred             ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence            3456666666652 3577777889999999986321 1111111111112223333388999999999999443 46666


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCc---
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK---  154 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~---  154 (285)
                      . -+.|++|...++.         +..    -..-|.+|...  |-.++| +|. ...|++|+-||.|+|||++.+.   
T Consensus       231 Dc~~~I~lw~~~~g~---------W~v----d~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  231 DCVKGIHLWEPSTGS---------WKV----DQRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             ccccceEeeeeccCc---------eee----cCccccccccc--hhhhcc-CCccCceEEeeecCceEEEEEecCCCccc
Confidence            4 8889999998762         111    12335568765  999995 775 5678999999999999999873   


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      ++.+ ++|.+.|+.+.|+....+||+|+.||+++|||++.-+    +.++..|..++.++.|...+...+++++.|.+|.
T Consensus       295 ~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  295 AVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             eeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            3433 7899999999999998899999999999999998655    3578889999999999888888999999999999


Q ss_pred             EEEeccc
Q 023246          231 VLRLQRR  237 (285)
Q Consensus       231 vwd~~~~  237 (285)
                      +||+.-.
T Consensus       374 iWDlsvE  380 (440)
T KOG0302|consen  374 IWDLSVE  380 (440)
T ss_pred             EEEeecc
Confidence            9999743

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=6.5e-24  Score=163.65  Aligned_cols=234  Identities=14%  Similarity=0.216  Sum_probs=186.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      +.++|..+.|-++ ...|++|+.|..|++|+....+.             .....+.+..++|+.+.|.++++.+++ +.
T Consensus       174 h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  174 HEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             cccccceeEEccC-cchhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence            4678999999995 48999999999999999986652             223333677889999999999986555 67


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |+.+++|++...                +...++.+|...  |+++.| ......+++|+.|.+|+.||+....+..++.
T Consensus       240 d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l  300 (459)
T KOG0288|consen  240 DKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTVL  300 (459)
T ss_pred             CCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheecccc
Confidence            999999999988                789999999988  999997 5555559999999999999999888887765


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      . .+.+..++.+  ...++++-.|++|++||.++... ...+.+ +.+..+ ....+...+++.+.|.++.+.|+++.+.
T Consensus       301 ~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl-~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  301 P-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSL-DLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             c-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeE-eeccCCeEEeeecCCCceeeeecccccE
Confidence            3 4567777765  45688999999999999988765 344333 344333 3355666778889999999999998766


Q ss_pred             ceeE--------------eeeccccccCCCCCcCeEEEeecCCCCCCC
Q 023246          240 LAYR--------------ERRYNAADFESDEEEGETYLLGFSDSDASS  273 (285)
Q Consensus       240 ~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  273 (285)
                      ...+              .++|+..+++.++.+|.||++....++.+.
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence            5543              478889999999999999999988876543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=156.96  Aligned_cols=202  Identities=10%  Similarity=0.063  Sum_probs=161.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      .++|+++.|.+++ ..+++.+.|+.+++|++...+              ...++ .+|++.|+++.|......+++++ |
T Consensus       219 ~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r--------------~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~D  282 (459)
T KOG0288|consen  219 LGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLR--------------LRHTL-SGHTDKVTAAKFKLSHSRVVSGSAD  282 (459)
T ss_pred             CCCcceeeecCCC-ceEEeecCCCceeeeeccchh--------------hhhhh-cccccceeeehhhccccceeecccc
Confidence            5689999999987 788889999999999999875              23333 88999999999988776678865 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .+|++||+...                .+.+++....   .+..+.. +  ...+++|..|+.|++||.++..+......
T Consensus       283 RtiK~WDl~k~----------------~C~kt~l~~S---~cnDI~~-~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~  340 (459)
T KOG0288|consen  283 RTIKLWDLQKA----------------YCSKTVLPGS---QCNDIVC-S--ISDVISGHFDKKVRFWDIRSADKTRSVPL  340 (459)
T ss_pred             chhhhhhhhhh----------------heeccccccc---cccceEe-c--ceeeeecccccceEEEeccCCceeeEeec
Confidence            99999999876                4554443222   1666665 3  56788999999999999999999999987


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC-CCCC---cccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDN---AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +. .|+++..++++..+++++.|.++.+.|+++..+.. +...   ...-......++++.|+++|+.||.|+||++.++
T Consensus       341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence            65 99999999999999999999999999999876532 2111   1111333345778889999999999999999988


Q ss_pred             ccceeE
Q 023246          238 QTLAYR  243 (285)
Q Consensus       238 ~~~~~~  243 (285)
                      +....+
T Consensus       420 KlE~~l  425 (459)
T KOG0288|consen  420 KLEKVL  425 (459)
T ss_pred             eEEEEe
Confidence            776554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=8.4e-23  Score=155.98  Aligned_cols=161  Identities=17%  Similarity=0.318  Sum_probs=129.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d   81 (285)
                      +.=.+++|||...-.|++|..-+.|++|...++...    .       ...-+ .+|+..|-.++|||... .|++++ |
T Consensus       212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~----v-------d~~Pf-~gH~~SVEDLqWSptE~~vfaScS~D  279 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK----V-------DQRPF-TGHTKSVEDLQWSPTEDGVFASCSCD  279 (440)
T ss_pred             ccceeeecccccccccccCccccceEeeeeccCcee----e-------cCccc-cccccchhhhccCCccCceEEeeecC
Confidence            344679999965457999999999999999987632    1       11112 56999999999999875 788865 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC---CceEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~~  158 (285)
                      ++|+|||++.+.              .+.....+.|...  |+.+.| +....+|++|++||+++|||++.   ++++.+
T Consensus       280 gsIrIWDiRs~~--------------~~~~~~~kAh~sD--VNVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~  342 (440)
T KOG0302|consen  280 GSIRIWDIRSGP--------------KKAAVSTKAHNSD--VNVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQPVAT  342 (440)
T ss_pred             ceEEEEEecCCC--------------ccceeEeeccCCc--eeeEEc-cCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence            999999999872              1222333677766  999996 87777999999999999999875   678999


Q ss_pred             EecccccceEeEEcCCCCe-EEEEecCCcEEEEcCC
Q 023246          159 MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  193 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~  193 (285)
                      ++.|..+|+++.|+|.... |++++.|.+|.+||+.
T Consensus       343 fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  343 FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             EEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            9999999999999997654 8888999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=8.4e-22  Score=144.19  Aligned_cols=237  Identities=16%  Similarity=0.178  Sum_probs=165.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.+.|+|++.+.+. ..++||+.|.++++||+.+|+.+..++                -..+|..+.|+++|++++.+. 
T Consensus        51 HtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k----------------~~~~Vk~~~F~~~gn~~l~~tD  113 (327)
T KOG0643|consen   51 HTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK----------------TNSPVKRVDFSFGGNLILASTD  113 (327)
T ss_pred             CCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee----------------cCCeeEEEeeccCCcEEEEEeh
Confidence            35789999999974 899999999999999999998543322                245788999999999766643 


Q ss_pred             -----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246           81 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        81 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                           .+.|.++|++....         ......+...+..+...  ++.+- |+|-+++|++|.+||.|..||+++|+.
T Consensus       114 ~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~-Wg~l~~~ii~Ghe~G~is~~da~~g~~  181 (327)
T KOG0643|consen  114 KQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSAL-WGPLGETIIAGHEDGSISIYDARTGKE  181 (327)
T ss_pred             hhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeee-ecccCCEEEEecCCCcEEEEEcccCce
Confidence                 35699999985410         11112445666666655  78777 599999999999999999999999854


Q ss_pred             -EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeE-----
Q 023246          156 -VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM-----  229 (285)
Q Consensus       156 -~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i-----  229 (285)
                       +.....|...|+.+.++|+..+++|++.|.+-++||.++-.++.......++.+....+..+ .++.++.....     
T Consensus       182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d-~VilgGGqeA~dVTTT  260 (327)
T KOG0643|consen  182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD-HVILGGGQEAMDVTTT  260 (327)
T ss_pred             eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc-eEEecCCceeeeeeee
Confidence             56667899999999999999999999999999999998776533222333333333222222 33333222111     


Q ss_pred             ---------EEEEeccc----------ccceeEeeeccccccCCCCCcCeEEEeecCC
Q 023246          230 ---------HVLRLQRR----------QTLAYRERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       230 ---------~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                               +.+++--.          ..+..+.+.|++....++.++|.|-+.-|+.
T Consensus       261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                     11111100          1234456777888888888887776665543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=1.2e-22  Score=166.05  Aligned_cols=221  Identities=17%  Similarity=0.261  Sum_probs=176.6

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEE
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF   87 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iw   87 (285)
                      ++|-+-....+++|+.|..+.+|......               +...+.+|...|.++....++. +++|+ |.++++|
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW  127 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVW  127 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCC---------------chhhhhccccceeeeecCCcCc-eEecccccceEEe
Confidence            66665223579999999999999998764               3333489999999999888877 67765 9999999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccce
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN  167 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~  167 (285)
                      ...                  ++...+.+|+..  |.++.+ -|++ .++||+.|.+|++|.-  ++.+.++.+|...|.
T Consensus       128 ~~~------------------~l~~~l~gH~as--VWAv~~-l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR  183 (745)
T KOG0301|consen  128 RIG------------------ELVYSLQGHTAS--VWAVAS-LPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR  183 (745)
T ss_pred             cch------------------hhhcccCCcchh--eeeeee-cCCC-cEEeccCcceeeeccC--Cchhhhhccchhhee
Confidence            986                  456678999977  999987 4555 8899999999999986  788999999999999


Q ss_pred             EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeec
Q 023246          168 QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY  247 (285)
Q Consensus       168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~  247 (285)
                      .+++-|++ .|++|+.||.|++|++.+..+.++.+|..-++++. ....++.+++.++|+++++|+...  ..+.+....
T Consensus       184 gL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDrtlriW~~~e--~~q~I~lPt  259 (745)
T KOG0301|consen  184 GLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDRTLRIWKKDE--CVQVITLPT  259 (745)
T ss_pred             eeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCceEEEeecCc--eEEEEecCc
Confidence            99999864 58899999999999998888999999999998886 355677999999999999998763  333332221


Q ss_pred             ---------cccccCCCCCcCeEEEeecCCCCCCC
Q 023246          248 ---------NAADFESDEEEGETYLLGFSDSDASS  273 (285)
Q Consensus       248 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~  273 (285)
                               ...++..+..+|+|+++..+.....+
T Consensus       260 tsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As  294 (745)
T KOG0301|consen  260 TSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKAS  294 (745)
T ss_pred             cceEEEEEeeCCCEEEeccCceEEEEEecccccCC
Confidence                     23456666778899998776544433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5e-22  Score=161.95  Aligned_cols=231  Identities=11%  Similarity=0.149  Sum_probs=173.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      .+|.++||+.+. +.||.+-.||.|.||++..+-.             +...+..+-...|.+++|++.++++.++.+|.
T Consensus        26 s~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~-------------~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~   91 (691)
T KOG2048|consen   26 SEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWF-------------LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGS   91 (691)
T ss_pred             cceEEEEEeccC-CceeeeccCCcEEEEccCCCce-------------eeEEEecCCCCceeeEEEccCCeEEeecCCce
Confidence            478999999975 8999999999999999986531             33333334467899999998777877788999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE--EEec
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMVG  161 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--~~~~  161 (285)
                      |.-||+.+.                +....+......  |.+++. +|.+..++.|++||.++.++...++..+  .+..
T Consensus        92 i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   92 ITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             EEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            999999987                566666666655  999997 9999999999999988888888777653  3444


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CC----CCCCCcccceeeccc--cCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP----PLPDNAEKIMKANKQ--GREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~----~~~~~~~~~~~~~~~--~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ..+.|.+++|+|++..+++|+.||.|++||...+. +.    ++......-..+.|.  ...+..+++|.+-|+|.+||.
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDS  232 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcc
Confidence            56899999999999999999999999999987654 22    122222211222221  124557899999999999999


Q ss_pred             cccccceeE-eeeccccccCCCCCcCeEEEeecC
Q 023246          235 QRRQTLAYR-ERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       235 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                      ..+.+++.+ .+..+...++..+.+.+++..|.+
T Consensus       233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  233 IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC
Confidence            988776655 444455556666655556555443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-21  Score=145.89  Aligned_cols=214  Identities=14%  Similarity=0.233  Sum_probs=154.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-   79 (285)
                      +++.|++++|+.+| ..|||++.|++|+||+++.-....        .. +++..+.  -+..+.+.|+||.+-++. . 
T Consensus        85 H~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e--------Hr-~~R~nve--~dhpT~V~FapDc~s~vv~~~  152 (420)
T KOG2096|consen   85 HKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE--------HR-CIRQNVE--YDHPTRVVFAPDCKSVVVSVK  152 (420)
T ss_pred             cCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh--------hh-Hhhcccc--CCCceEEEECCCcceEEEEEc
Confidence            46789999999986 999999999999999998643110        00 1111111  125678999999985444 3 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      +..++++|-+..... ...++...   .+.....-+.|...  +..+-. ..++.++++++.|..|.+|+++ |+.+..+
T Consensus       153 ~g~~l~vyk~~K~~d-G~~~~~~v---~~D~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  153 RGNKLCVYKLVKKTD-GSGSHHFV---HIDNLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             cCCEEEEEEeeeccc-CCCCcccc---cccccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence            588899998865421 11111000   00111122234433  556665 6788999999999999999999 9999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcC---CCC------CCCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      ...+..-+..+.+|+|+++++++..--|++|.+   +.+      ++.++.+|...+..... +++++.+++.|.||+++
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF-sn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF-SNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee-CCCcceeEEEecCCcEE
Confidence            877778888999999999999999999999996   222      24568889988876654 56777899999999999


Q ss_pred             EEEecc
Q 023246          231 VLRLQR  236 (285)
Q Consensus       231 vwd~~~  236 (285)
                      +||..-
T Consensus       304 iwdtdV  309 (420)
T KOG2096|consen  304 IWDTDV  309 (420)
T ss_pred             Eeeccc
Confidence            999763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=5.6e-24  Score=174.47  Aligned_cols=160  Identities=21%  Similarity=0.386  Sum_probs=144.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +..+|.++.|++.. .+|++|+.+|+|++||+...+              .+.++ .+|...+..+.|+|-+.++++++ 
T Consensus        69 hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~gSt  132 (825)
T KOG0267|consen   69 HESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASGST  132 (825)
T ss_pred             cCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccccc
Confidence            35689999999974 899999999999999999876              33333 89999999999999999999975 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |..+++||.+..                .+.+.+.+|...  +..+.| +|+|++++.|++|..+++||+..|+.+..|.
T Consensus       133 dtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  133 DTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             cccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccccc
Confidence            999999999865                588999998865  889997 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      .|.+.+..+.|+|..-.+++|+.|+++++||+++-.
T Consensus       194 ~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  194 SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             cccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence            999999999999999899999999999999998654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.6e-21  Score=144.74  Aligned_cols=198  Identities=13%  Similarity=0.184  Sum_probs=148.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++..|++++.+|-+ +.+++++.|++|++||++..++              +..+   +...-..++|.|+|-++|.+. 
T Consensus        99 H~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c--------------qg~l---~~~~~pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   99 HKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC--------------QGLL---NLSGRPIAAFDPEGLIFALANG  160 (311)
T ss_pred             CCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC--------------ceEE---ecCCCcceeECCCCcEEEEecC
Confidence            46789999999975 9999999999999999997763              2222   122334679999999999976 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .+.|++||++.-.+              .+..+|.-. ......+.+.| +|+|++++.++..+.+++.|.-+|..+.++
T Consensus       161 ~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  161 SELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             CCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence            44999999986520              233333322 22233899998 999999999999999999999999999988


Q ss_pred             ecccccc---eEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 VGDRHVV---NQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 ~~h~~~v---~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ..+...-   -...|.|+++++++|+.||+|.+|+++++. +..+.+ +...+.+..+   ..++..-.+.+..+-+|=.
T Consensus       226 s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f---nP~~~mf~sa~s~l~fw~p  302 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF---NPRYAMFVSASSNLVFWLP  302 (311)
T ss_pred             eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc---CCceeeeeecCceEEEEec
Confidence            8765432   567899999999999999999999998876 455554 3444433332   2336666777888888854


Q ss_pred             c
Q 023246          235 Q  235 (285)
Q Consensus       235 ~  235 (285)
                      .
T Consensus       303 ~  303 (311)
T KOG1446|consen  303 D  303 (311)
T ss_pred             c
Confidence            4

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.90  E-value=1.7e-21  Score=148.24  Aligned_cols=167  Identities=16%  Similarity=0.219  Sum_probs=146.7

Q ss_pred             CCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           58 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      ..|+.+|.+++.+|+.+++++| .|..-.+|++.++                ..+..+.+|+..  |.++.| +.++.+|
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g----------------e~~~eltgHKDS--Vt~~~F-shdgtlL  121 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG----------------EFAGELTGHKDS--VTCCSF-SHDGTLL  121 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC----------------cceeEecCCCCc--eEEEEE-ccCceEE
Confidence            7899999999999988899996 5999999999998                688889999987  999998 9999999


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCCCCcccceeeccccC
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGR  215 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~  215 (285)
                      ++|+.+|.|+||+..++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+..+ ..+.+.+|..+..+-. ..+
T Consensus       122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~-f~p  200 (399)
T KOG0296|consen  122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGE-FIP  200 (399)
T ss_pred             EecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccc-ccC
Confidence            99999999999999999988888655677888999999999999999999999999774 4577778777764443 345


Q ss_pred             CCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          216 EDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       216 ~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +++.++++..||+|++|+..+++.+.++.
T Consensus       201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  201 DGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             CCceEEEEecCceEEEEecCCCceeEEec
Confidence            67899999999999999999998887764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.4e-22  Score=154.03  Aligned_cols=201  Identities=14%  Similarity=0.215  Sum_probs=150.9

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEec-CCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN-DEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~   83 (285)
                      |.+++|+..-.++||+|+.|.+|++||+.+++              +...+ ..|.+.|.++.|+|.. .+|++|+ |++
T Consensus       246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~  310 (463)
T KOG0270|consen  246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGT  310 (463)
T ss_pred             HHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cceeh-hhcCCceeEEEecCCCceEEEeccccce
Confidence            45778887666899999999999999999997              33333 6899999999999976 5778876 999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCC-CceEEEEec
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG-GKLVRLMVG  161 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~  161 (285)
                      |.+.|.+...               ..-..++ ....  |-.++| .+. ...++++.+||+|+-+|++. ++++.++++
T Consensus       311 V~l~D~R~~~---------------~s~~~wk-~~g~--VEkv~w-~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A  371 (463)
T KOG0270|consen  311 VALKDCRDPS---------------NSGKEWK-FDGE--VEKVAW-DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA  371 (463)
T ss_pred             EEeeeccCcc---------------ccCceEE-eccc--eEEEEe-cCCCceeEEEecCCceEEeeecCCCCCceeEEEe
Confidence            9999998531               1222222 2223  788886 654 45678889999999999886 489999999


Q ss_pred             ccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCcc---cceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          162 DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAE---KIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      |.++|.++++++.-+. ++|++.|+.|++|++..........|..   ...+..........++.|+..+.++|||+...
T Consensus       372 Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  372 HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            9999999999987665 8999999999999986544332222222   22333333334557788888889999998876


Q ss_pred             ccc
Q 023246          238 QTL  240 (285)
Q Consensus       238 ~~~  240 (285)
                      ...
T Consensus       452 ~~V  454 (463)
T KOG0270|consen  452 SPV  454 (463)
T ss_pred             hhH
Confidence            443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=7.2e-22  Score=156.58  Aligned_cols=219  Identities=17%  Similarity=0.211  Sum_probs=151.8

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~   82 (285)
                      .-|.++++.|.| ..|++|+.|-+|++||+......        .+  ..+.+...-...|++++|++.|..|++ +...
T Consensus       168 k~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas--------~~--~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  168 KIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDAS--------MR--SFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             eEEEEeeecCCC-ceeeeccccceEEEEeccccccc--------ch--hhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            358899999975 89999999999999999854321        11  122233444567999999999986555 6688


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGK-LVRLMV  160 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~  160 (285)
                      ..+|+|-....-. ....-...+   .-+..-++|...  +++.+| +| +.+.+++++.||++++||+...+ .+..++
T Consensus       237 qakl~DRdG~~~~-e~~KGDQYI---~Dm~nTKGHia~--lt~g~w-hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik  309 (641)
T KOG0772|consen  237 QAKLLDRDGFEIV-EFSKGDQYI---RDMYNTKGHIAE--LTCGCW-HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK  309 (641)
T ss_pred             ceeEEccCCceee-eeeccchhh---hhhhccCCceee--eecccc-ccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence            8999997654100 000000000   111223567755  899996 66 55688999999999999987544 344443


Q ss_pred             -----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC----CCCCcc--cceeeccccCCCceEEEeCCCCeE
Q 023246          161 -----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----LPDNAE--KIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       161 -----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                           +-.-+++.++|+|+++.+|+|+.||.|.+|+.....+..    -..|..  .+.++ ..+.++.+|++-+.|+++
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi-~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI-SFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE-EeccccchhhhccCCCce
Confidence                 234578999999999999999999999999985543211    122433  44444 346678899999999999


Q ss_pred             EEEEecccccce
Q 023246          230 HVLRLQRRQTLA  241 (285)
Q Consensus       230 ~vwd~~~~~~~~  241 (285)
                      ++||++..+...
T Consensus       389 KvWDLrq~kkpL  400 (641)
T KOG0772|consen  389 KVWDLRQFKKPL  400 (641)
T ss_pred             eeeeccccccch
Confidence            999999876543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.8e-21  Score=140.69  Aligned_cols=204  Identities=15%  Similarity=0.214  Sum_probs=152.9

Q ss_pred             CccceeEEEE-cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE
Q 023246            2 NSIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~-s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s   78 (285)
                      +++||+.++| +|.-+.+||++++||.|.||.-..++.             ........|...|++++|.|.+.  +|++
T Consensus        55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-------------~k~~e~~~h~~SVNsV~wapheygl~Lac  121 (299)
T KOG1332|consen   55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-------------TKAYEHAAHSASVNSVAWAPHEYGLLLAC  121 (299)
T ss_pred             CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-------------hhhhhhhhhcccceeecccccccceEEEE
Confidence            4689999999 555459999999999999999988764             22233368999999999999764  6777


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---C-----------cEEEEecCCC
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---D-----------EYVMSGSDCG  143 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-----------~~l~~~~~dg  143 (285)
                      + +||.|.|.+.....             .+...+....|.-.  ++++++ .|.   |           +.|++|+.|.
T Consensus       122 asSDG~vsvl~~~~~g-------------~w~t~ki~~aH~~G--vnsVsw-apa~~~g~~~~~~~~~~~krlvSgGcDn  185 (299)
T KOG1332|consen  122 ASSDGKVSVLTYDSSG-------------GWTTSKIVFAHEIG--VNSVSW-APASAPGSLVDQGPAAKVKRLVSGGCDN  185 (299)
T ss_pred             eeCCCcEEEEEEcCCC-------------Cccchhhhhccccc--cceeee-cCcCCCccccccCcccccceeeccCCcc
Confidence            4 69999999987641             11233455677765  999995 765   4           5699999999


Q ss_pred             eEEEEecCCCc--eEEEEecccccceEeEEcCCC----CeEEEEecCCcEEEEcCCCC----CCCCCCCCcccceeeccc
Q 023246          144 HLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKANKQ  213 (285)
Q Consensus       144 ~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~----~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~  213 (285)
                      .|+||+..+++  ...+|.+|.+.|..++|.|.-    .++++|+.||++.||..+..    +...+......+..+.| 
T Consensus       186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSW-  264 (299)
T KOG1332|consen  186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSW-  264 (299)
T ss_pred             ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEE-
Confidence            99999988764  345688999999999999964    35999999999999987632    11223233344555554 


Q ss_pred             cCCCceEEEeCCCCeEEEEEec
Q 023246          214 GREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      +..+..|.....|..+.+|.-.
T Consensus       265 S~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  265 SLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             eccccEEEEecCCcEEEEEEeC
Confidence            4455577777889999999643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=1.1e-21  Score=160.40  Aligned_cols=189  Identities=16%  Similarity=0.264  Sum_probs=146.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      +..|.|++...++  .+++|+.|.++++|......                .. ..+|+.+|+++++-|++.++..+.|+
T Consensus       101 ~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------~~-l~gH~asVWAv~~l~e~~~vTgsaDK  161 (745)
T KOG0301|consen  101 KSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------YS-LQGHTASVWAVASLPENTYVTGSADK  161 (745)
T ss_pred             ccceeeeecCCcC--ceEecccccceEEecchhhh----------------cc-cCCcchheeeeeecCCCcEEeccCcc
Confidence            3456666655543  49999999999999876322                12 38999999999999998666556799


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      +|++|.-.                  +.+++|.+|.+-  |+++++.  ++..|++++.||.|++|++ +|+++..+.+|
T Consensus       162 tIklWk~~------------------~~l~tf~gHtD~--VRgL~vl--~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh  218 (745)
T KOG0301|consen  162 TIKLWKGG------------------TLLKTFSGHTDC--VRGLAVL--DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH  218 (745)
T ss_pred             eeeeccCC------------------chhhhhccchhh--eeeeEEe--cCCCeEeecCCceEEEEec-cCceeeeeecc
Confidence            99999874                  588999999977  9999973  4557889999999999999 69999999999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +..|+++...+++..++++++|++++||+.. .+.+.+.-....+-.. . ...+.-+++|++||.|+||....
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa-~-~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSA-K-VLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEE-E-EeeCCCEEEeccCceEEEEEecc
Confidence            9999999988888899999999999999976 2222222111122111 1 12334688999999999998764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.5e-20  Score=140.74  Aligned_cols=221  Identities=11%  Similarity=0.140  Sum_probs=151.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..-+|+.|++-| .+||+|+.||.|.|||+.+..               +...+.+|..+|++++||++|++|++++ |.
T Consensus        24 ~~a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~   87 (405)
T KOG1273|consen   24 PLAECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDW   87 (405)
T ss_pred             CccceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCc
Confidence            346789999964 999999999999999999874               3344489999999999999999988865 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCcc-------------------ccCCCCceEee-------cccCcee----eeeEEEecCC
Q 023246           83 LVYLFEKNMGLGPSPLSLSPED-------------------LQKREEPQVYS-------GHRNSQT----VKGVNFFGPN  132 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~-------~~~~~~~----i~~~~~~~~~  132 (285)
                      .|.+||+..+.  ....+....                   +.....+..+.       .......    -.+..| ++.
T Consensus        88 si~lwDl~~gs--~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~  164 (405)
T KOG1273|consen   88 SIKLWDLLKGS--PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRR  164 (405)
T ss_pred             eeEEEeccCCC--ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCC
Confidence            99999998774  111111100                   00000111111       0000000    111224 788


Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEeccc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-------CCCCCCCCc
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNA  204 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~  204 (285)
                      |+++++|...|.+.++|..+.++++.++-.. ..|..+.++..|+.|+.-+.|..||.|+++.-       .+.......
T Consensus       165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q  244 (405)
T KOG1273|consen  165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ  244 (405)
T ss_pred             CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence            9999999999999999999999999888655 78999999999999999999999999997521       111110011


Q ss_pred             ccceeecc----ccCCCceEEEeCCC-CeEEEEEecccccceeE
Q 023246          205 EKIMKANK----QGREDHSRITLTPD-VIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       205 ~~~~~~~~----~~~~~~~~~~~s~d-~~i~vwd~~~~~~~~~~  243 (285)
                      .-+....|    .+.++.++++++.. ..++||.-..+.++..+
T Consensus       245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence            11222211    23355677766643 78999997777665544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.6e-20  Score=140.10  Aligned_cols=154  Identities=14%  Similarity=0.181  Sum_probs=124.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      +...|.++.|+|.+ ..|++++.||++++|++...++...                ..|..++.+++|.++.+.+..+.|
T Consensus        12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~----------------~~~~~plL~c~F~d~~~~~~G~~d   74 (323)
T KOG1036|consen   12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLK----------------FKHGAPLLDCAFADESTIVTGGLD   74 (323)
T ss_pred             ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhh----------------eecCCceeeeeccCCceEEEeccC
Confidence            45679999999975 6777778999999999987643211                468889999999997666666779


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      |.|+.+|+.++                 ....+..|..+  +.++.+ .+....+++|+.|++|++||.+.......+..
T Consensus        75 g~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~  134 (323)
T KOG1036|consen   75 GQVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ  134 (323)
T ss_pred             ceEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEecccccccccccc
Confidence            99999999987                 44556667766  999998 88888999999999999999997666655553


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                       ...|.++..  .++.|+.|+.|..+.+||++..
T Consensus       135 -~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen  135 -GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             -CceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence             347888766  4678999999999999998753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=4.2e-21  Score=150.09  Aligned_cols=203  Identities=14%  Similarity=0.184  Sum_probs=151.7

Q ss_pred             cceeEEEEcCCCC-cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEec
Q 023246            4 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYN   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~   80 (285)
                      .+|++++|+|... .++|+|..-|+|-+||+.+.+..     .      .-..+...|..+|.++.|+|...  ++.++.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----~------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----K------DGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----c------CceEEeccCCccccceEecCCChhheeeecc
Confidence            6899999999765 68999999999999999743311     1      11222378999999999999763  455567


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~  159 (285)
                      ||+|++-|++..                ..-..+........+..+.| +.+...++.+..=|...+||++++.. ...+
T Consensus       256 DGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~  318 (498)
T KOG4328|consen  256 DGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYENL  318 (498)
T ss_pred             Cceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccchhh
Confidence            999999999876                22222333233344777887 77777888888888999999998665 6667


Q ss_pred             ecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          160 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      .-|...|..|+++|...+ |+|++.|++++|||++.-..     .....|...+ ..+..++.+..+++-+.|..|+|||
T Consensus       319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRVFD  397 (498)
T ss_pred             hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEEee
Confidence            778899999999998877 99999999999999875321     2223344444 4444566566699999999999999


Q ss_pred             ec
Q 023246          234 LQ  235 (285)
Q Consensus       234 ~~  235 (285)
                      ..
T Consensus       398 ss  399 (498)
T KOG4328|consen  398 SS  399 (498)
T ss_pred             cc
Confidence            83

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=8.2e-21  Score=141.25  Aligned_cols=191  Identities=19%  Similarity=0.216  Sum_probs=140.4

Q ss_pred             CCCCcceEEEEEecCCC-EEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246           58 GKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      ..-.+.|.+|+|||... ++++++ |++|++|+++....              ...+....|..+  +.+++| +.+|..
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------~~~ka~~~~~~P--vL~v~W-sddgsk   86 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------LVPKAQQSHDGP--VLDVCW-SDDGSK   86 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCc--------------ccchhhhccCCC--eEEEEE-ccCCce
Confidence            34467899999999554 555565 99999999986310              122344456655  999996 999999


Q ss_pred             EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCC--eEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccc
Q 023246          136 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP--MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ  213 (285)
Q Consensus       136 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  213 (285)
                      +++|+.|+.+++||+.++ .+..+..|..+|..+.|-+...  .|+||+.|++|++||++...........++++.....
T Consensus        87 Vf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~  165 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL  165 (347)
T ss_pred             EEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc
Confidence            999999999999999988 5556777999999999987666  5999999999999999987653333345555555433


Q ss_pred             cCCCceEEEeCCCCeEEEEEecccccceeE------------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          214 GREDHSRITLTPDVIMHVLRLQRRQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+   +++.+..++.|.++++++.....+.            .--.+....+.+.-||++.+...+++
T Consensus       166 ~p---m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  166 YP---MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             Cc---eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence            33   7888999999999999765332221            22233444566677788887777665

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.3e-21  Score=148.56  Aligned_cols=205  Identities=14%  Similarity=0.136  Sum_probs=156.2

Q ss_pred             CcEEEEeeCCCcEEEEEccCCccc-CCcCCCC-----CcccccccccCCCCCcceEEEEEecCCC-EEEEec-CCcEEEE
Q 023246           16 PNYFAVGGSDEYARVYDIRKCHWY-SPISSDT-----PVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLF   87 (285)
Q Consensus        16 ~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d~~i~iw   87 (285)
                      ++++|.|+.|..|.|||+.-...+ ..+....     ....-.......+|+..|..++|+..-+ .||+|+ |.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            479999999999999998643211 1111110     0000011222357999999999998765 788875 9999999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE-EEEecccccc
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLMVGDRHVV  166 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~~~~~h~~~v  166 (285)
                      |+.++                ++..++..|..+  |.++.|++....++++|+.|++|.+.|.+..... ..++ -.+.|
T Consensus       272 D~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~V  332 (463)
T KOG0270|consen  272 DVDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEV  332 (463)
T ss_pred             EcCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccce
Confidence            99999                788888878766  9999986667899999999999999999853332 2222 35789


Q ss_pred             eEeEEcCCCCe-EEEEecCCcEEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          167 NQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       167 ~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      -.++|.|.... ++++..||+++-+|+|..  .+.++..|..++-.+........++++++.|+.+++|++...+.
T Consensus       333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            99999998776 777789999999999865  35778889998877766666677899999999999999986544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=4.9e-21  Score=157.54  Aligned_cols=217  Identities=18%  Similarity=0.262  Sum_probs=165.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---CEEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~s   78 (285)
                      +|..+.+++++|++ ..||+|..-|.++||++...+.               ...+..|...|.|+.|+...   ++||+
T Consensus       458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhhh
Confidence            46789999999985 8999999999999999987652               22237899999999999643   58888


Q ss_pred             ec-CCcEEEEEcCCCCCCCC---------CCCCC--cc------------------ccCCCCceEeecccC---ceeeee
Q 023246           79 YN-DELVYLFEKNMGLGPSP---------LSLSP--ED------------------LQKREEPQVYSGHRN---SQTVKG  125 (285)
Q Consensus        79 ~~-d~~i~iwd~~~~~~~~~---------~~~~~--~~------------------~~~~~~~~~~~~~~~---~~~i~~  125 (285)
                      ++ |..|+|||+.....+..         .+++.  ..                  .++......|..|..   ...++.
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD  601 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD  601 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence            65 99999999976651110         00000  00                  000001112222221   123888


Q ss_pred             EEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec---ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCC
Q 023246          126 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  201 (285)
Q Consensus       126 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~  201 (285)
                      ++. .|+.+++++++.|..|+|||+++++....|++   |.+..-.+...|.|.|+++.+.|+++.++|..+++ +.++.
T Consensus       602 m~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  602 MAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             eee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence            887 99999999999999999999999999999974   66778888999999999999999999999997766 57788


Q ss_pred             CCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          202 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +|...+.... ..++-+.+++.+.||.|.||.+..
T Consensus       681 GHsE~VTG~k-F~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  681 GHSEAVTGVK-FLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             Ccchheeeee-ecccchhheeecCCceEEEEECch
Confidence            8887765543 356777899999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=2.3e-20  Score=138.24  Aligned_cols=212  Identities=17%  Similarity=0.200  Sum_probs=157.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCC-------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL   75 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~   75 (285)
                      -++|+.++-+|.++.+|+|+..+       -.+.||.+.........   .++.  ++..+-..+-+.|.|+.|.|++..
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tlE--~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STLE--CVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chhh--HhhcCCHHHhCceeeEEEcCCCCe
Confidence            36789999999888889888653       23678998754311000   0011  334443456679999999999999


Q ss_pred             EEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-----cccCceeeeeEEEecC--CCcEEEEecCCCeEEEE
Q 023246           76 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        76 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vw  148 (285)
                      +++-.|..|.+|++....               +....+.     .++..  .++-+| +|  +++.+++.+ |+++..|
T Consensus       138 lasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt~-d~tl~~~  198 (370)
T KOG1007|consen  138 LASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATTS-DSTLQFW  198 (370)
T ss_pred             eEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEeC-CCcEEEE
Confidence            999889999999998762               1112211     12222  566664 76  667776655 8999999


Q ss_pred             ecCCCceEEEEe-cccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeC
Q 023246          149 KKKGGKLVRLMV-GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT  224 (285)
Q Consensus       149 d~~~~~~~~~~~-~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s  224 (285)
                      |+++-++...+. +|...|..+.|+|+.++ |++|+.||.|+|||.+..+  +.++.+|...+-++-+....+.++++++
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence            999887776664 78899999999998776 9999999999999998765  6789999999887766666788999999


Q ss_pred             CCCeEEEEEecccc
Q 023246          225 PDVIMHVLRLQRRQ  238 (285)
Q Consensus       225 ~d~~i~vwd~~~~~  238 (285)
                      .|..|.+|...+-.
T Consensus       279 SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  279 SDSAVNLSCASSVS  292 (370)
T ss_pred             CCceeEEEeccccc
Confidence            99999999876543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.6e-19  Score=129.54  Aligned_cols=201  Identities=17%  Similarity=0.243  Sum_probs=155.7

Q ss_pred             CCccceeEEEEcC---CCCcEEEEee-CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246            1 MNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL   76 (285)
Q Consensus         1 ~~~~~v~~~~~s~---~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l   76 (285)
                      |+.+.|..++|-.   .++.+|++++ .|..|.+-|..+++              . .+.+.+|++.|.++ ++-++-++
T Consensus       134 mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--------------~-~~a~sghtghilal-yswn~~m~  197 (350)
T KOG0641|consen  134 MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--------------G-FHALSGHTGHILAL-YSWNGAMF  197 (350)
T ss_pred             ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--------------c-ceeecCCcccEEEE-EEecCcEE
Confidence            6778899999943   2446777765 46667777777775              2 22338999999887 44567799


Q ss_pred             EEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec--ccC---ceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           77 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRN---SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        77 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                      ++|+ |.+|+.||++-.                .++.++..  |..   ...|.+++. +|.|+++++|-.|....+||+
T Consensus       198 ~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  198 ASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             EccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEEe
Confidence            9976 999999999876                35444432  111   133888997 999999999999999999999


Q ss_pred             CCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC-----CCCcccceeeccccCCCceEEEeCC
Q 023246          151 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-----PDNAEKIMKANKQGREDHSRITLTP  225 (285)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~  225 (285)
                      +.+..+..+..|...|.++.|+|.-.++++|+.|..|++-|+.+....++     ..|...++...| .+.+-.+++.+.
T Consensus       261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw-h~~d~sfisssa  339 (350)
T KOG0641|consen  261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW-HPQDFSFISSSA  339 (350)
T ss_pred             eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe-cCccceeeeccC
Confidence            99999999999999999999999999999999999999999977643333     346666666655 334456788999


Q ss_pred             CCeEEEEEec
Q 023246          226 DVIMHVLRLQ  235 (285)
Q Consensus       226 d~~i~vwd~~  235 (285)
                      |.++.+|.+.
T Consensus       340 dkt~tlwa~~  349 (350)
T KOG0641|consen  340 DKTATLWALN  349 (350)
T ss_pred             cceEEEeccC
Confidence            9999999753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=3.9e-21  Score=152.20  Aligned_cols=196  Identities=12%  Similarity=0.171  Sum_probs=154.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~   82 (285)
                      .-|.++...|++ +.|++|+.-.++.|||+.....             .++.-+....-..++++.+||.++.++ ++||
T Consensus       466 nyiRSckL~pdg-rtLivGGeastlsiWDLAapTp-------------rikaeltssapaCyALa~spDakvcFsccsdG  531 (705)
T KOG0639|consen  466 NYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP-------------RIKAELTSSAPACYALAISPDAKVCFSCCSDG  531 (705)
T ss_pred             cceeeeEecCCC-ceEEeccccceeeeeeccCCCc-------------chhhhcCCcchhhhhhhcCCccceeeeeccCC
Confidence            457788999986 8999999999999999986642             112222333446788999999997666 6799


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-----
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-----  157 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-----  157 (285)
                      .|.|||+...                ..++.|++|.+.  +.++.+ +++|..|-+|+-|.+|+.||++++..+.     
T Consensus       532 nI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi-s~dGtklWTGGlDntvRcWDlregrqlqqhdF~  592 (705)
T KOG0639|consen  532 NIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS  592 (705)
T ss_pred             cEEEEEcccc----------------eeeecccCCCCC--ceeEEe-cCCCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence            9999999987                789999999988  999997 9999999999999999999998764321     


Q ss_pred             -----------------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCC
Q 023246          158 -----------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLP  201 (285)
Q Consensus       158 -----------------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~  201 (285)
                                                         .+..|.+.|.++.|.+.|+++++.+.|..+..|..-.+ .+.+.+
T Consensus       593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             hhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence                                               33456788999999999999999999999999987544 344444


Q ss_pred             CCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          202 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      . ...+.+.. .+.+++++|+||.|..-.||.+
T Consensus       673 E-~SsVlsCD-IS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  673 E-SSSVLSCD-ISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             c-cCcceeee-eccCceEEEecCCCcceEEEEE
Confidence            2 23333322 3567889999999988887764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=2.3e-20  Score=147.84  Aligned_cols=226  Identities=14%  Similarity=0.147  Sum_probs=162.4

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      |.++.+|... +.++||+. |-|+|||+.....      ..|+..+..    .....-|+++...|+|+.|++| .-.++
T Consensus       422 VcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------k~PvsqLdc----l~rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  422 VCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------KSPVSQLDC----LNRDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             EEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------CCccccccc----cCcccceeeeEecCCCceEEecccccee
Confidence            4457777754 78888885 8899999975421      112221110    1234578999999999977775 58899


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      .|||+....              ......+....  ...++++. +|+.+..+++..||.|.|||+.+...++.|++|..
T Consensus       490 siWDLAapT--------------prikaeltssa--paCyALa~-spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  490 SIWDLAAPT--------------PRIKAELTSSA--PACYALAI-SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             eeeeccCCC--------------cchhhhcCCcc--hhhhhhhc-CCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            999998761              11222222222  22778887 99999999999999999999999999999999999


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc----
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----  240 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~----  240 (285)
                      .+.|+.++++|..|-||+.|.+||.||++.++...-......++.+..+ +.+..++.|-.++.+.|......+..    
T Consensus       553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~kyqlhl  631 (705)
T KOG0639|consen  553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPEKYQLHL  631 (705)
T ss_pred             CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccC-CCccceeeecccCcEEEEecCCccceeecc
Confidence            9999999999999999999999999999987643333345566666553 34557778888888888876654332    


Q ss_pred             -----eeEeeeccccccCCCCCcCeE
Q 023246          241 -----AYRERRYNAADFESDEEEGET  261 (285)
Q Consensus       241 -----~~~~~~~~~~~~~~~~~~~~v  261 (285)
                           ..+.+.+.+..+++..-++.+
T Consensus       632 heScVLSlKFa~cGkwfvStGkDnlL  657 (705)
T KOG0639|consen  632 HESCVLSLKFAYCGKWFVSTGKDNLL  657 (705)
T ss_pred             cccEEEEEEecccCceeeecCchhhh
Confidence                 233566667766665444333

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6.7e-20  Score=137.20  Aligned_cols=200  Identities=18%  Similarity=0.249  Sum_probs=144.1

Q ss_pred             EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCC
Q 023246           18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPS   96 (285)
Q Consensus        18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~   96 (285)
                      .|++|++...|.-+++..... ..-...  --.+.+......|.+++++++.+  +.++|+| +|.+|+|||+...    
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~-~~~~s~--~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~----   73 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPK-GCTDSV--KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR----   73 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCcc-cccccc--ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch----
Confidence            577888888877777653220 000000  01112333447899999999984  6799996 5999999999887    


Q ss_pred             CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc--EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH  174 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  174 (285)
                                  ..+..+..|.+.  |+++.| .+...  .|++|++||.|.+|+....+++.++++|.+.|+.++++|.
T Consensus        74 ------------~qlg~ll~Hags--itaL~F-~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS  138 (362)
T KOG0294|consen   74 ------------KQLGILLSHAGS--ITALKF-YPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS  138 (362)
T ss_pred             ------------hhhcceeccccc--eEEEEe-cCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence                        677888888876  999998 55543  8999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCcEEEEcCCCCCC---CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeee
Q 023246          175 IPMFATCGIEKTVKLWAPMPTDF---PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERR  246 (285)
Q Consensus       175 ~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~  246 (285)
                      ++.-++.+.|+.+++|++-.++.   ..+. +....  +.| .+.+.+++.+. ...|-+|.+........++.+
T Consensus       139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~--v~w-~~~Gd~F~v~~-~~~i~i~q~d~A~v~~~i~~~  208 (362)
T KOG0294|consen  139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATL--VSW-SPQGDHFVVSG-RNKIDIYQLDNASVFREIENP  208 (362)
T ss_pred             CceEEEEcCCceeeeehhhcCccceeeccC-Cccee--eEE-cCCCCEEEEEe-ccEEEEEecccHhHhhhhhcc
Confidence            99999999999999999966553   3332 22222  333 34444444444 345778887776555444433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=9.9e-21  Score=142.10  Aligned_cols=213  Identities=12%  Similarity=0.185  Sum_probs=157.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC----Ccc------------cCCcC----------CCCCccccccccc
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK----CHW------------YSPIS----------SDTPVDTFCPRHL   56 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~----~~~------------~~~~~----------~~~~~~~~~~~~~   56 (285)
                      -+.|+++.|++.+ .++++++.|++..||...-    .+.            ....+          .+.+..- .+..-
T Consensus       190 ~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-vPl~~  267 (481)
T KOG0300|consen  190 TGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-VPLMR  267 (481)
T ss_pred             ccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-eeeee
Confidence            4689999999975 8999999999999998321    110            00000          0000000 12223


Q ss_pred             CCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246           57 IGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        57 ~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      +.+|...|.+..|-..|+.+++++ |.+..+||++++                ..+..+.+|...  .+.++- .|..++
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----------------e~v~~LtGHd~E--LtHcst-HptQrL  328 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----------------EVVNILTGHDSE--LTHCST-HPTQRL  328 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccC----------------ceeccccCcchh--cccccc-CCcceE
Confidence            368999999999999999888876 999999999999                799999999977  888885 899999


Q ss_pred             EEEecCCCeEEEEecCCC-ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeecc
Q 023246          136 VMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANK  212 (285)
Q Consensus       136 l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~  212 (285)
                      +++.+.|.+.++||.+.. +.+..|++|...|+++.|..+ ..+++++.|.+|++||+++..  +.++. ...++..++.
T Consensus       329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvav  406 (481)
T KOG0300|consen  329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAV  406 (481)
T ss_pred             EEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEe
Confidence            999999999999998743 457889999999999999876 458899999999999998765  33332 2222222221


Q ss_pred             ccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          213 QGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       213 ~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                       +.....++.--.+.+|++||+...+.
T Consensus       407 -s~g~~iIAiPhDNRqvRlfDlnG~Rl  432 (481)
T KOG0300|consen  407 -SKGHPIIAIPHDNRQVRLFDLNGNRL  432 (481)
T ss_pred             -ecCCceEEeccCCceEEEEecCCCcc
Confidence             22233455555668999999886544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.6e-21  Score=166.29  Aligned_cols=214  Identities=15%  Similarity=0.164  Sum_probs=162.7

Q ss_pred             ceeEEEEcCCCCc---EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-
Q 023246            5 RLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~---~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-   79 (285)
                      +-+.++|.+.+..   +||.|..||.|.+||...-..      +.   ..........|++.|..+.|++... +||+| 
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~------~~---~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa  136 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA------NA---SEEVLATKSKHTGPVLGLDFNPFQGNLLASGA  136 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhcc------Cc---chHHHhhhcccCCceeeeeccccCCceeeccC
Confidence            4567899886544   599999999999999875200      00   0011122278999999999999765 89996 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      +||.|.|||+....                ....+........|.+++|.-.....|++++.+|.+.|||++..+.+-.+
T Consensus       137 ~~geI~iWDlnn~~----------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  137 DDGEILIWDLNKPE----------------TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             CCCcEEEeccCCcC----------------CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence            59999999998762                22222111122339999963345667889999999999999988887777


Q ss_pred             eccc--ccceEeEEcCCCCe-EEEEecCC---cEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          160 VGDR--HVVNQLEPHPHIPM-FATCGIEK---TVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       160 ~~h~--~~v~~~~~~p~~~~-l~t~~~d~---~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                      ..|.  ..+..++|+|+... +++++.|.   .|.+||+|...  ++.+.+|...++.+.|+..+.+++++...|+.+.+
T Consensus       201 s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~  280 (1049)
T KOG0307|consen  201 SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC  280 (1049)
T ss_pred             ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE
Confidence            6554  35788999998765 77777654   79999997654  57778899999999999999999999999999999


Q ss_pred             EEecccccceeE
Q 023246          232 LRLQRRQTLAYR  243 (285)
Q Consensus       232 wd~~~~~~~~~~  243 (285)
                      |+..+++.+..+
T Consensus       281 wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  281 WNPNTGEVLGEL  292 (1049)
T ss_pred             ecCCCceEeeec
Confidence            999998776554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=4.2e-19  Score=149.68  Aligned_cols=230  Identities=13%  Similarity=0.176  Sum_probs=181.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d   81 (285)
                      ..+.+.++|.|+| +.|++++.||.|++|+......             .+..+ ..+...|.+++-...  +|++ +.+
T Consensus        13 t~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~--~f~~~s~~   75 (933)
T KOG1274|consen   13 TGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN--HFLTGSEQ   75 (933)
T ss_pred             cCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc--ceEEeecc
Confidence            4567889999986 7999999999999999876521             23333 336777777776544  5555 569


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|.+|.+..+                ..-..+...+-+  +..++| +.+|++++.|++|-.|++.++.+......+.+
T Consensus        76 ~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg  136 (933)
T KOG1274|consen   76 NTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG  136 (933)
T ss_pred             ceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheeecc
Confidence            99999999877                333334444444  889998 89999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC-------CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-------NAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      |.++|.++.|+|.+++||+.+-||.|++|++..+.+ .++.+       ....++....|.+.++.++..+.|+.|++++
T Consensus       137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~  216 (933)
T KOG1274|consen  137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS  216 (933)
T ss_pred             cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence            999999999999999999999999999999987754 22221       1144555555677778888899999999998


Q ss_pred             eccccc------------ceeEeeeccccccCCCCCcCeEEEeecCC
Q 023246          234 LQRRQT------------LAYRERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       234 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      ......            ...+.++|++.+++...-+|.|.+++.+.
T Consensus       217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            765532            33447899999999999999999998875

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=4e-20  Score=142.29  Aligned_cols=208  Identities=14%  Similarity=0.162  Sum_probs=155.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-e
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-Y   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~   79 (285)
                      ++++|..++|+|.+.+.+|+|+.|.+|.||.+..+.+.....        .+...+.+|...|--++|+|... .|++ |
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------epvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------EPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------cceEEEeecceeEEEEeecccchhhHhhcc
Confidence            467899999999988999999999999999998765432211        22233389999999999999774 5565 6


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.+|.+|++.++                +.+.++. |.+.  |.++.| +.+|.++++.+.|..|+|||.++++.+..-
T Consensus       152 ~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  152 SDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             CCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            7999999999998                5555565 7766  999997 999999999999999999999999999988


Q ss_pred             ecccc-cceEeEEcCCCCeEEEEe---cCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          160 VGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       160 ~~h~~-~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                      .+|.+ .-..+.|-.++..+-||-   .+..+-+||...-.    +.++. ....++-..+-...+-..++|-.|+.|+.
T Consensus       212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence            88874 344566777888444442   46789999986543    12232 22333222221222335678888999999


Q ss_pred             EEecccc
Q 023246          232 LRLQRRQ  238 (285)
Q Consensus       232 wd~~~~~  238 (285)
                      |.+....
T Consensus       291 yEit~d~  297 (472)
T KOG0303|consen  291 FEITNEP  297 (472)
T ss_pred             EEecCCC
Confidence            9988754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.9e-20  Score=145.00  Aligned_cols=177  Identities=15%  Similarity=0.212  Sum_probs=135.4

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEE-ec
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YN   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s-~~   80 (285)
                      ..|+|+.|+-|+ .+|+||+.||.|.+|.+.+---.......      .+...+..|+-+|+++...+.|  .+|++ +.
T Consensus       124 Q~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~------~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~  196 (476)
T KOG0646|consen  124 QSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSV------KPLHIFSDHTLSITDLQIGSGGTNARLYTASE  196 (476)
T ss_pred             cceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCc------cceeeeccCcceeEEEEecCCCccceEEEecC
Confidence            479999999986 89999999999999998643111011112      3344448999999999988765  36666 56


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-------
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-------  153 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------  153 (285)
                      |.++++||+..+                ..+.++.-.   ..+.+++. +|.++.++.|+.+|.|.+.++...       
T Consensus       197 D~t~k~wdlS~g----------------~LLlti~fp---~si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v  256 (476)
T KOG0646|consen  197 DRTIKLWDLSLG----------------VLLLTITFP---SSIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGV  256 (476)
T ss_pred             CceEEEEEeccc----------------eeeEEEecC---CcceeEEE-cccccEEEecCCcceEEeeehhcCCcccccc
Confidence            999999999988                566555432   33999997 999999999999999999886432       


Q ss_pred             ---------ceEEEEecccc--cceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccc
Q 023246          154 ---------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI  207 (285)
Q Consensus       154 ---------~~~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~  207 (285)
                               ..+..+.+|.+  .|+|++++-||..|++|+.||.|++||+.+.. ++++....+++
T Consensus       257 ~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  257 NQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV  322 (476)
T ss_pred             cccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence                     23556778887  99999999999999999999999999997665 34443233444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=3.2e-19  Score=132.62  Aligned_cols=159  Identities=21%  Similarity=0.347  Sum_probs=127.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---CEEEEe
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~s~   79 (285)
                      +-.|.++.|-|-+.-+|.+++.|.++++||..+.+....+                .-.+.|.+-++||-.   .++|+|
T Consensus       101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F----------------~me~~VYshamSp~a~sHcLiA~g  164 (397)
T KOG4283|consen  101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF----------------KMEGKVYSHAMSPMAMSHCLIAAG  164 (397)
T ss_pred             eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe----------------ecCceeehhhcChhhhcceEEEEe
Confidence            4468889999965579999999999999999987632211                224467777777743   366777


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCC-ceE
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGG-KLV  156 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~-~~~  156 (285)
                      . +-.|++.|+.++                ...+++.+|++.  |.++.| +|...++ ++|+.||.|++||++.. .+.
T Consensus       165 tr~~~VrLCDi~SG----------------s~sH~LsGHr~~--vlaV~W-sp~~e~vLatgsaDg~irlWDiRrasgcf  225 (397)
T KOG4283|consen  165 TRDVQVRLCDIASG----------------SFSHTLSGHRDG--VLAVEW-SPSSEWVLATGSADGAIRLWDIRRASGCF  225 (397)
T ss_pred             cCCCcEEEEeccCC----------------cceeeeccccCc--eEEEEe-ccCceeEEEecCCCceEEEEEeeccccee
Confidence            5 889999999999                789999999988  999995 8877764 78999999999998743 233


Q ss_pred             EEE--------------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          157 RLM--------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       157 ~~~--------------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      ..+              .+|.+.|+.++|..++.++++++.|..+++|+...+.
T Consensus       226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             EEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            322              3577889999999999999999999999999986654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=3.3e-19  Score=137.30  Aligned_cols=202  Identities=12%  Similarity=0.070  Sum_probs=144.4

Q ss_pred             cCCCCCcceEEEEEecCC-CEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC
Q 023246           56 LIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  133 (285)
Q Consensus        56 ~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  133 (285)
                      +..+|+++|..++|+|.. +.+|+|+ |.+|.||.+..+.-..         ...+.+..+.+|...  |.-+.|+....
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---------~ltepvv~L~gH~rr--Vg~V~wHPtA~  144 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---------DLTEPVVELYGHQRR--VGLVQWHPTAP  144 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc---------CcccceEEEeeccee--EEEEeecccch
Confidence            347999999999999966 5778865 9999999997652111         111467788899855  99999743456


Q ss_pred             cEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeecc
Q 023246          134 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANK  212 (285)
Q Consensus       134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~  212 (285)
                      +.|++++.|.+|.+|++.+|+.+-++. |...|.++.|+.+|.+|+|.+.|+.||+||++.+++. .-..|.+.-.....
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI  223 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence            788999999999999999999988888 9999999999999999999999999999999998853 33344433222222


Q ss_pred             ccCCCceEEEe---CCCCeEEEEEecccccceeEee--eccccccCCC-CCcCeEEEeecCCC
Q 023246          213 QGREDHSRITL---TPDVIMHVLRLQRRQTLAYRER--RYNAADFESD-EEEGETYLLGFSDS  269 (285)
Q Consensus       213 ~~~~~~~~~~~---s~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~  269 (285)
                      +..+...+.+|   .++.++-+||-..-+.+..+..  ..++.-++.. ++.+-||+.|-.|+
T Consensus       224 fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  224 FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             EeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence            22333344443   3468999998776555433311  1123334433 45567788886665

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.5e-19  Score=150.21  Aligned_cols=195  Identities=18%  Similarity=0.268  Sum_probs=157.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .|.+++...   ++|++|+.+++|.+|.+..++.               ..++...+-++++++|+.+|+++|.|+ |-.
T Consensus        58 ~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~---------------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~  119 (933)
T KOG1274|consen   58 LVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE---------------DTILARFTLPIRDLAVSGSGKMIAAGSDDTA  119 (933)
T ss_pred             eeEEEeecc---cceEEeeccceEEEeeCCCCCc---------------cceeeeeeccceEEEEecCCcEEEeecCcee
Confidence            455555544   5999999999999999998752               222234466899999999999999965 889


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc-
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-  162 (285)
                      |++-+....                .....+++|..+  |.++.| +|++++|++.+-||.|++||+.++.+..++.+- 
T Consensus       120 vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~  180 (933)
T KOG1274|consen  120 VKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD  180 (933)
T ss_pred             EEEEecccc----------------chheeecccCCc--eeeeeE-cCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence            999999877                678899999987  999998 999999999999999999999998887766421 


Q ss_pred             -------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          163 -------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       163 -------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                             ...+..++|+|++..|+..+.|++|++|+..+... ..+.. +....+....+++.+.|++++.-+|.|.|||
T Consensus       181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN  260 (933)
T ss_pred             ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence                   34567799999988899999999999999988763 23322 2233355555677789999999999999999


Q ss_pred             ecc
Q 023246          234 LQR  236 (285)
Q Consensus       234 ~~~  236 (285)
                      .++
T Consensus       261 v~t  263 (933)
T KOG1274|consen  261 VDT  263 (933)
T ss_pred             ccc
Confidence            994

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.8e-19  Score=129.50  Aligned_cols=236  Identities=12%  Similarity=0.115  Sum_probs=153.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcC-CCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i   84 (285)
                      |.+-+|+|-+ .+|++|..+|+|.+..+.+........ ...++..      ..+|.++++.++|.  ..+|.++.||.|
T Consensus        13 vf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~------eqahdgpiy~~~f~--d~~Lls~gdG~V   83 (325)
T KOG0649|consen   13 VFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVP------EQAHDGPIYYLAFH--DDFLLSGGDGLV   83 (325)
T ss_pred             HHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceee------ccccCCCeeeeeee--hhheeeccCceE
Confidence            4556889964 899999999999999987532111110 1111111      27899999999998  458888889999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      +=|.-+....+ ......+.+..........  -  ..|+++-. .|..+-++.++.|+.++.||+++|+..+++++|+.
T Consensus        84 ~gw~W~E~~es-~~~K~lwe~~~P~~~~~~e--v--PeINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   84 YGWEWNEEEES-LATKRLWEVKIPMQVDAVE--V--PEINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             EEeeehhhhhh-ccchhhhhhcCccccCccc--C--CccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence            99887654211 1111111111111111111  1  12788875 88888888888999999999999999999999999


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccc-eeecc------ccCCCceEEEeCCCCeEEEEEecc
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKANK------QGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~------~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .|.+++-......+++|++||++|+||.++++. ..+.....+- ....+      ...+...+++| ..-.+.+|.+++
T Consensus       158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrs  236 (325)
T KOG0649|consen  158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRS  236 (325)
T ss_pred             eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccC
Confidence            999999866667799999999999999998863 2222111111 00000      01123344443 346789999999


Q ss_pred             cccceeEeeeccccccCCCCC
Q 023246          237 RQTLAYRERRYNAADFESDEE  257 (285)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~  257 (285)
                      .+....+........+...++
T Consensus       237 se~t~vfpipa~v~~v~F~~d  257 (325)
T KOG0649|consen  237 SESTCVFPIPARVHLVDFVDD  257 (325)
T ss_pred             CCceEEEecccceeEeeeecc
Confidence            887777765554444444433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.4e-19  Score=139.09  Aligned_cols=203  Identities=10%  Similarity=0.155  Sum_probs=152.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~   80 (285)
                      .++|+++.|+|. ..+|++++.|++++||-+.....       ..+.+.      .--..+|.+.+|.|+|+ .++++ .
T Consensus       213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N-------~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~r  278 (514)
T KOG2055|consen  213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVN-------PKLQSI------HLEKFPIQKAEFAPNGHSVIFTSGR  278 (514)
T ss_pred             cCCceEEEecCC-CceEEEecCCCcEEEEEecCccC-------hhheee------eeccCccceeeecCCCceEEEeccc
Confidence            468999999996 58999999999999999974331       111111      22345899999999998 66664 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ...++.||+.+..              ...+....++.. ..+..... ++++++|+..+..|.|.+....+++.+.+++
T Consensus       279 rky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~K  342 (514)
T KOG2055|consen  279 RKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSFK  342 (514)
T ss_pred             ceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence            8899999998761              112233333332 23667776 8999999999999999999999999999888


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      - .+.|..++|+.+++.|+.++.+|.|.+||++...+ ..+.....---...+.+....++++||..|.|.|||..+
T Consensus       343 i-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  343 I-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             e-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence            4 67899999999999999999999999999988764 444322222222222344666999999999999999654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.9e-20  Score=161.04  Aligned_cols=206  Identities=14%  Similarity=0.200  Sum_probs=165.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccccccc-CCCCCcceEEEEEecCC-CEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTS-ELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~-~~l~s~   79 (285)
                      +.+.|.++.|++..+++||+|+.||.|.|||+...+              .+.+. ...-...|.+++|+..- +.|+++
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS~  180 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILASG  180 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence            467899999999887899999999999999998654              11111 12345689999999866 477776


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCC---eEEEEecCCC-
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCG---HLFIWKKKGG-  153 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg---~v~vwd~~~~-  153 (285)
                      + +|.+.|||++..                +.+..+..+.....+..++| +|+. ..++++++|.   .|.+||++.. 
T Consensus       181 s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S~l~W-hP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  181 SPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCSVLAW-HPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             CCCCCceeccccCC----------------CcccccccCCCccceeeeee-CCCCceeeeeecCCCCCceeEeecccccC
Confidence            5 889999999977                56666666655444778886 7754 5666666543   6999998854 


Q ss_pred             ceEEEEecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                      .++..+.+|+..|.+|.|++.+ +++++++.|+.|.+|+.+++++ -.+.....+.+.+.|+..+...+.+.+-||.|.|
T Consensus       244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I  323 (1049)
T KOG0307|consen  244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI  323 (1049)
T ss_pred             CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence            4678888999999999999977 6799999999999999999874 6777778889999998888888899999999999


Q ss_pred             EEecccc
Q 023246          232 LRLQRRQ  238 (285)
Q Consensus       232 wd~~~~~  238 (285)
                      +.+....
T Consensus       324 ~sl~~~~  330 (1049)
T KOG0307|consen  324 YSLQGTD  330 (1049)
T ss_pred             eeeecCC
Confidence            9998754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=7e-19  Score=131.39  Aligned_cols=189  Identities=21%  Similarity=0.207  Sum_probs=135.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      .+++.+++|.++  ..+++|+.||.|+.+|+.+++..                .+..|..+|++|.+++....+++|+ |
T Consensus        54 ~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~----------------~igth~~~i~ci~~~~~~~~vIsgsWD  115 (323)
T KOG1036|consen   54 GAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNED----------------QIGTHDEGIRCIEYSYEVGCVISGSWD  115 (323)
T ss_pred             CCceeeeeccCC--ceEEEeccCceEEEEEecCCcce----------------eeccCCCceEEEEeeccCCeEEEcccC
Confidence            578999999994  68999999999999999987521                2267999999999998777777755 9


Q ss_pred             CcEEEEEcCCCCC-----------------------CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           82 ELVYLFEKNMGLG-----------------------PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        82 ~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      ++|++||.+....                       .....+..+++++.......+...-+-.+.++++ -|++.-++.
T Consensus       116 ~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~-~pn~eGy~~  194 (323)
T KOG1036|consen  116 KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL-VPNGEGYVV  194 (323)
T ss_pred             ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE-ecCCCceEE
Confidence            9999999984320                       1111111222333332222222222234889997 678888899


Q ss_pred             ecCCCeEEEEecCCC----ceEEEEeccc---------ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCc
Q 023246          139 GSDCGHLFIWKKKGG----KLVRLMVGDR---------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNA  204 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~----~~~~~~~~h~---------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~  204 (285)
                      ++-||.|.+=.++..    +.-..|+.|.         -+|++++|+|-...|+||+.||.|.+||+...+ +.++....
T Consensus       195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~  274 (323)
T KOG1036|consen  195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE  274 (323)
T ss_pred             EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence            999999998776655    3445666664         379999999998899999999999999997765 56665554


Q ss_pred             ccceee
Q 023246          205 EKIMKA  210 (285)
Q Consensus       205 ~~~~~~  210 (285)
                      ..+..+
T Consensus       275 ~SI~sl  280 (323)
T KOG1036|consen  275 TSISSL  280 (323)
T ss_pred             CceEEE
Confidence            444343

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=5.6e-19  Score=130.95  Aligned_cols=204  Identities=14%  Similarity=0.219  Sum_probs=156.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEecC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYND   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~d   81 (285)
                      ++|.|+.|.|+ +..+++-. |..|.+|++..+..+        +........ .+|....++-+|+|  +|+.+++.+|
T Consensus       124 g~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~--------vaev~ss~s-~e~~~~ftsg~WspHHdgnqv~tt~d  192 (370)
T KOG1007|consen  124 GKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKI--------VAEVLSSES-AEMRHSFTSGAWSPHHDGNQVATTSD  192 (370)
T ss_pred             CceeeEEEcCC-CCeeEEec-cCceEEEEcccCcch--------heeeccccc-ccccceecccccCCCCccceEEEeCC
Confidence            57899999995 46666554 899999999876531        000011111 34677788899999  6789999999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-ecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCC-CceEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~-~~~~~~  158 (285)
                      +++..||+++.                +....+ ..|...  +..+.| +|+.+ +|++|++||.|++||.+. ..++.+
T Consensus       193 ~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  193 STLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             CcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            99999999876                333332 345544  999998 78765 568899999999999875 557899


Q ss_pred             EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCC------------------------------CCCCCCCCCcccc
Q 023246          159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAEKI  207 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~~~  207 (285)
                      +.+|...|.++.|+|... ++++++.|..|.+|....                              +.+.++..|...+
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV  333 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence            999999999999999654 588999999999996421                              1123455678889


Q ss_pred             eeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          208 MKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +...|.+.+.-++++.|.||.+.|=.+.+.
T Consensus       334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             EEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            999998888889999999999998776654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=2.9e-19  Score=141.49  Aligned_cols=201  Identities=11%  Similarity=0.188  Sum_probs=154.2

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL   86 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~i   86 (285)
                      |++..... .++++|+..+.|+|||++...              +. ..+.+|...|+++.++-...+||+.+ .|.|.|
T Consensus        84 Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl--------------~h-r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   84 CVACASQS-LYEISGGQSGCVKIWDLRAKL--------------IH-RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII  147 (673)
T ss_pred             HHhhhhcc-eeeeccCcCceeeehhhHHHH--------------Hh-hhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence            45555553 799999999999999999543              33 33389999999999999999999976 789999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE-EEEecCCCeEEEEecCCCceEEEE-ecccc
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLM-VGDRH  164 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~  164 (285)
                      ..+.++                .....|. +.....+.-+.| ++..++ |.+++++|.|.+||+....++..+ +.|..
T Consensus       148 h~~~t~----------------~~tt~f~-~~sgqsvRll~y-s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA  209 (673)
T KOG4378|consen  148 HGTKTK----------------QKTTTFT-IDSGQSVRLLRY-SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA  209 (673)
T ss_pred             EecccC----------------cccccee-cCCCCeEEEeec-ccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence            999887                4555554 333345778888 777665 567899999999999876666554 57999


Q ss_pred             cceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          165 VVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       165 ~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      +...++|+|.... |++.+.|+.|.+||.+......-.....+. ........+.++++|+..|.|..||++....+...
T Consensus       210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl-stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL-STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             CcCcceecCCccceEEEecccceEEEeecccccccceeeecCCc-ceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence            9999999997665 899999999999999877643222233333 23333556679999999999999999987666544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.5e-21  Score=150.63  Aligned_cols=205  Identities=54%  Similarity=0.991  Sum_probs=163.8

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~d~   82 (285)
                      ....+++.+|.+.+++++|+.|..+++||.+.-...   .....+..|++.++.....-.|++++|+.++ .+|++.+|-
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe  358 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE  358 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence            467889999999889999999999999998754321   2234678889998877777789999999655 688888999


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      .|++|....+.++.+.+....   .....+.+++|.+..+|.++-||.|..+|+++|++-|.|.+|+-.+++.+..+.+.
T Consensus       359 ~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD  435 (559)
T KOG1334|consen  359 DIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD  435 (559)
T ss_pred             ceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence            999997776655554444433   12233448999999899999999999999999999999999999999999999987


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeecccc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (285)
                      ..-|+||.-+|.-..||+++.|.-|+||.+.+.+..........++..+...
T Consensus       436 r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN~~~  487 (559)
T KOG1334|consen  436 RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRNKRE  487 (559)
T ss_pred             cceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhhccc
Confidence            7899999999999999999999999999986655444443444454444433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2.9e-18  Score=128.16  Aligned_cols=210  Identities=16%  Similarity=0.200  Sum_probs=152.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEec-
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISYN-   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~~-   80 (285)
                      .-|+++.|++-| +.+|||+.|++|+|||..+..           .++......+.|.+.|..+.|.+  -|+.+|+++ 
T Consensus        14 DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen   14 DLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             ceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            458999999975 999999999999999986443           12233333478999999999986  468999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCc----
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK----  154 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~----  154 (285)
                      |+++.||.-....       ....-..+....++...+..  |+++.| .|.  |-.+++++.||.++||+....-    
T Consensus        82 Drtv~iWEE~~~~-------~~~~~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   82 DRTVSIWEEQEKS-------EEAHGRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             CCceeeeeecccc-------cccccceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            9999999874220       00001223344556666655  999998 764  6688999999999999865432    


Q ss_pred             --eEEEEe-------cccccceEeEEcCC---CCeEEEEecC-----CcEEEEcCCCC--C---CCCCCCCcccceeecc
Q 023246          155 --LVRLMV-------GDRHVVNQLEPHPH---IPMFATCGIE-----KTVKLWAPMPT--D---FPPLPDNAEKIMKANK  212 (285)
Q Consensus       155 --~~~~~~-------~h~~~v~~~~~~p~---~~~l~t~~~d-----~~i~iwd~~~~--~---~~~~~~~~~~~~~~~~  212 (285)
                        +.+.+.       .+..+..|+.|+|.   .++|+.|+.+     +.+.||.....  +   +.++.++..++..+.|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence              223333       35678899999984   3457777755     37888876322  2   4678889999999988


Q ss_pred             ccCCC---ceEEEeCCCCeEEEEEecc
Q 023246          213 QGRED---HSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       213 ~~~~~---~~~~~~s~d~~i~vwd~~~  236 (285)
                      .+.-+   .++++++.|| |+||.+..
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEee
Confidence            77643   3678899999 99999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=2.1e-18  Score=140.27  Aligned_cols=256  Identities=7%  Similarity=0.058  Sum_probs=165.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-   79 (285)
                      +...|..+.|-| +..+|++.+.|.++++||+.+.++..             ..+..+|.+.|.+++|.|... .|++| 
T Consensus        99 H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G-------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg  164 (720)
T KOG0321|consen   99 HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG-------------GRLNLGHTGSVKSECFMPTNPAVFCTGG  164 (720)
T ss_pred             ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec-------------ceeecccccccchhhhccCCCcceeecc
Confidence            456789999999 77899999999999999999887421             113479999999999999886 66666 


Q ss_pred             cCCcEEEEEcCCCCCCCC----------CCC-CCccccCCCCceEeecccCc--eeeeeEEEecCCCcEEEEecC-CCeE
Q 023246           80 NDELVYLFEKNMGLGPSP----------LSL-SPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSD-CGHL  145 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~-dg~v  145 (285)
                      .||.|.|||++-......          ... ....-+..+.+..-..+...  ..|+.+.|  .|...|++++. |+.|
T Consensus       165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~i  242 (720)
T KOG0321|consen  165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTI  242 (720)
T ss_pred             CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcce
Confidence            499999999975430000          000 00000000112222222222  11444544  67778888777 9999


Q ss_pred             EEEecCCCceEEE--------Eecc---cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC---CCCCCCcc-cceee
Q 023246          146 FIWKKKGGKLVRL--------MVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PPLPDNAE-KIMKA  210 (285)
Q Consensus       146 ~vwd~~~~~~~~~--------~~~h---~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~~~~-~~~~~  210 (285)
                      +|||++.......        +..|   .-.+.++..+..|.+|...+.|+.|.+|++....+   ..+.++.. ..+..
T Consensus       243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk  322 (720)
T KOG0321|consen  243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK  322 (720)
T ss_pred             EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee
Confidence            9999986544322        2223   23577888888899977777799999999976543   33433322 23333


Q ss_pred             ccccCCCceEEEeCCCCeEEEEEecccccceeE-----------eeec-cccccCCCCCcCeEEEeecCCCCCCC
Q 023246          211 NKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-----------ERRY-NAADFESDEEEGETYLLGFSDSDASS  273 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~  273 (285)
                      ...+.++.++++++.|...++|.+...+....+           .+.+ ....++...++.++-++.+.++-++.
T Consensus       323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  323 SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence            334567889999999999999999876543321           1222 12223333667778888886665544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=4.5e-18  Score=128.24  Aligned_cols=238  Identities=13%  Similarity=0.216  Sum_probs=168.0

Q ss_pred             CccceeEEEEcC----CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---C
Q 023246            2 NSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E   74 (285)
Q Consensus         2 ~~~~v~~~~~s~----~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~   74 (285)
                      ++.+|.+++|++    +.+..+||.+. ..+.+|.....-.+..          .+...-..|......++|+-+-   .
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~----------lq~y~D~d~~Esfytcsw~yd~~~~~  105 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL----------LQSYADEDHDESFYTCSWSYDSNTGN  105 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee----------eeeccCCCCCcceEEEEEEecCCCCC
Confidence            457899999985    34456776665 5788898764321110          1111113477788888997653   2


Q ss_pred             -EEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246           75 -LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        75 -~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~  152 (285)
                       ++|. |.-|.|+|.|+.+.                +....+.+|...  |+.+.+...+.+++++++.|..|++|++++
T Consensus       106 p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             eeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence             6666 56999999999988                788999999987  999998444568999999999999999999


Q ss_pred             CceEEEE---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-----C-----------CC------------
Q 023246          153 GKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-----P-----------LP------------  201 (285)
Q Consensus       153 ~~~~~~~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-----~-----------~~------------  201 (285)
                      ..++..+   .+|...|.++.|++++.++++++.|.++++|++......     .           ++            
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            9998887   479999999999999999999999999999998733210     0           00            


Q ss_pred             -CCcccceeeccccCCCceEEEeCCCCeEEEEEecc-cccc---------e----------------eEeeeccccccCC
Q 023246          202 -DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQTL---------A----------------YRERRYNAADFES  254 (285)
Q Consensus       202 -~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~-~~~~---------~----------------~~~~~~~~~~~~~  254 (285)
                       .|...+-+.-|.   +.++++-|.++.|..|.... .+.+         .                .+.+.+-...++.
T Consensus       248 diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             ccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence             011111111111   34788888999999998721 1110         0                1122334455778


Q ss_pred             CCCcCeEEEeecCCCCC
Q 023246          255 DEEEGETYLLGFSDSDA  271 (285)
Q Consensus       255 ~~~~~~v~~~~~~~~~~  271 (285)
                      +...|.+|+++++..+.
T Consensus       325 gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             ccCCCcEEEEECCCCCC
Confidence            88889999999887665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.82  E-value=3.1e-17  Score=131.09  Aligned_cols=228  Identities=11%  Similarity=0.095  Sum_probs=149.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~   82 (285)
                      .+.+++|+|++..++++++.++.|++||+.+++..              ..+ ..+. .+..++|+|+++.++. + .++
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--------------~~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~   95 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--------------GTL-PSGP-DPELFALHPNGKILYIANEDDN   95 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--------------Eec-cCCC-CccEEEECCCCCEEEEEcCCCC
Confidence            46789999987444577888999999999887632              111 2222 2467899999986654 4 489


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC-eEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~  161 (285)
                      .|++||+.+.                +.+..+.... .  +.+++| +|++++++++..++ .+.+||.++++.+..+..
T Consensus        96 ~l~~~d~~~~----------------~~~~~~~~~~-~--~~~~~~-~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        96 LVTVIDIETR----------------KVLAEIPVGV-E--PEGMAV-SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             eEEEEECCCC----------------eEEeEeeCCC-C--cceEEE-CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            9999999875                4555554322 2  677886 99999999888765 567889988877665543


Q ss_pred             ccccceEeEEcCCCCeEE-EEecCCcEEEEcCCCCCC-CCCCCCc-----cc--ceeeccccCCCce-EEEeCCCCeEEE
Q 023246          162 DRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDF-PPLPDNA-----EK--IMKANKQGREDHS-RITLTPDVIMHV  231 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~-~~~~~~~-----~~--~~~~~~~~~~~~~-~~~~s~d~~i~v  231 (285)
                       ...+..++|+|++++|+ ++..++.|++||+++++. ..+..+.     ..  ...+.+ .++++. +++...++.+.+
T Consensus       156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEEE
Confidence             34567899999999875 445689999999987653 2221111     11  111211 333444 455566788999


Q ss_pred             EEecccccceeE---------eeeccccccCCC-CCcCeEEEeecCCCC
Q 023246          232 LRLQRRQTLAYR---------ERRYNAADFESD-EEEGETYLLGFSDSD  270 (285)
Q Consensus       232 wd~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~v~~~~~~~~~  270 (285)
                      ||+++.+....+         .+.+++..+... ..++.|.+++...++
T Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            999876554332         244455544432 345667777777655

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=7.7e-19  Score=146.76  Aligned_cols=199  Identities=13%  Similarity=0.110  Sum_probs=158.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~   82 (285)
                      ..+++++.++= +++.+.|...|+|-+||+++|-....+.            -...|.++|++++...-++.+++ +.+|
T Consensus       449 ~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~------------~~~ah~~~V~gla~D~~n~~~vsa~~~G  515 (910)
T KOG1539|consen  449 INATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFG------------DSPAHKGEVTGLAVDGTNRLLVSAGADG  515 (910)
T ss_pred             cceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccc------------cCccccCceeEEEecCCCceEEEccCcc
Confidence            46788899985 5999999999999999999986322110            12579999999999988888887 5699


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      .+..||....                ..+..+.-..   .+.++.+ +.....++.+.+|-.|+++|..+.+.++.+.+|
T Consensus       516 ilkfw~f~~k----------------~l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh  575 (910)
T KOG1539|consen  516 ILKFWDFKKK----------------VLKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH  575 (910)
T ss_pred             eEEEEecCCc----------------ceeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence            9999999876                4555554332   2777776 777788999999999999999999999999999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC-CeEEEEEecc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRLQR  236 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~i~vwd~~~  236 (285)
                      .+.|++++|||+|++|++++.|++|++||+-++.+.-...-..+...+. .++...++++...| .-|++|.-..
T Consensus       576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls-~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLS-FSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeE-ECCCCCEEEEEEecCceEEEEEchh
Confidence            9999999999999999999999999999998877533222333333333 35567788888888 7899996443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=9.2e-18  Score=140.41  Aligned_cols=141  Identities=12%  Similarity=0.136  Sum_probs=109.5

Q ss_pred             eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--
Q 023246          122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--  196 (285)
Q Consensus       122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--  196 (285)
                      .+++++. ++.|++.+.|+..|.|-+|++.+|-...++   ..|.++|+.++....++.+++++.+|.+++||.....  
T Consensus       450 ~~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  450 NATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             ceEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            3788886 999999999999999999999999887777   5899999999999999999999999999999975432  


Q ss_pred             ----------------------------------------CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          197 ----------------------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       197 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                                                              ++.+.+|...+.... .+++++.+++++-|++|++||+.+
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccC
Confidence                                                    122334555554443 366788999999999999999999


Q ss_pred             cccceeE---------eeeccccccC-CCCCcCeEEEe
Q 023246          237 RQTLAYR---------ERRYNAADFE-SDEEEGETYLL  264 (285)
Q Consensus       237 ~~~~~~~---------~~~~~~~~~~-~~~~~~~v~~~  264 (285)
                      ...+-.+         ..+|++..++ .|.+...||++
T Consensus       608 ~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  608 GTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             cceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            8765543         4566666554 33444446554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=1.4e-17  Score=133.10  Aligned_cols=204  Identities=8%  Similarity=0.059  Sum_probs=136.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C-C
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-E   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d-~   82 (285)
                      .+..++|+|++..+++++..++.+++||+.+.+..              ..+  .+...+.+++|+|++++++++. + .
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~  137 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEI--PVGVEPEGMAVSPDGKIVVNTSETTN  137 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEe--eCCCCcceEEECCCCCEEEEEecCCC
Confidence            35678999987444455667899999999876522              111  1123467899999999888764 4 4


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .+.+||..+.                +....+... ..  ...++| ++++++++. +..++.|++||+++++.+..+..
T Consensus       138 ~~~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~-s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~  197 (300)
T TIGR03866       138 MAHFIDTKTY----------------EIVDNVLVD-QR--PRFAEF-TADGKELWVSSEIGGTVSVIDVATRKVIKKITF  197 (300)
T ss_pred             eEEEEeCCCC----------------eEEEEEEcC-CC--ccEEEE-CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence            5778898765                333333222 12  566886 999998854 45699999999999888776643


Q ss_pred             cc-----c--cceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEe-CCCCeEEEE
Q 023246          162 DR-----H--VVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL-TPDVIMHVL  232 (285)
Q Consensus       162 h~-----~--~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~i~vw  232 (285)
                      +.     .  ....++|+|+++++ ++.+.++.+.+||+++.++.....+...+..+.+ .+++.+++++ ..++.|.+|
T Consensus       198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF-TPDEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE-CCCCCEEEEEcCCCCeEEEE
Confidence            21     1  23468899999984 4445567899999987765322122333444443 4455566654 568999999


Q ss_pred             EecccccceeEee
Q 023246          233 RLQRRQTLAYRER  245 (285)
Q Consensus       233 d~~~~~~~~~~~~  245 (285)
                      |+++.+.+..+..
T Consensus       277 d~~~~~~~~~~~~  289 (300)
T TIGR03866       277 DVAALKVIKSIKV  289 (300)
T ss_pred             ECCCCcEEEEEEc
Confidence            9999877666543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=1.2e-17  Score=139.48  Aligned_cols=252  Identities=15%  Similarity=0.139  Sum_probs=173.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE-e
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS-Y   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s-~   79 (285)
                      ..+|+|+.|+|..++++|.|+.+|+|.+||++.+....       .  .........|..+++.+.|..+..  -|++ +
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~--s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------P--SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------C--cccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            46899999999999999999999999999999775311       1  123333467999999999987543  2555 6


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-----
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-----  154 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-----  154 (285)
                      .||.|+.|+++.-..+..........   .....+..   ...++.++|...+...++.|+++|.|..-+....+     
T Consensus       313 sDG~i~~W~~~~l~~P~e~~~~~~~~---~~~~~~~~---~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~  386 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVEGLLLESKK---HKGQQSSK---AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV  386 (555)
T ss_pred             cCCcEeeeeccccccchhhccccccc---cccccccc---ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence            79999999887652111110000000   00001111   12378899855577789999999999884433221     


Q ss_pred             ---eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC--CCCCCCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246          155 ---LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       155 ---~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                         ....+..|.++|+++.++|-+..++..+.|.+++||...  ...+..+..+...+....|.......++++..+|.+
T Consensus       387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l  466 (555)
T KOG1587|consen  387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL  466 (555)
T ss_pred             cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence               133455688999999999988875444449999999875  233455555666677788766667788999999999


Q ss_pred             EEEEecccccce------------eEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          230 HVLRLQRRQTLA------------YRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       230 ~vwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+||+.......            ...+++.+..++.++..|.++++.+.+.
T Consensus       467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            999998653222            2234555777888888888888887654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=1.9e-18  Score=130.10  Aligned_cols=197  Identities=14%  Similarity=0.134  Sum_probs=142.6

Q ss_pred             CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc---ceEEEEEecCCCEEEEecCCcEEEEEc
Q 023246           13 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI---HITGLAYSNTSELLISYNDELVYLFEK   89 (285)
Q Consensus        13 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~i~~s~~~~~l~s~~d~~i~iwd~   89 (285)
                      |+ ..++|+.+.+.-|++||..+|++...+..             ..|..   ...+++|+|||..|++|....|++||+
T Consensus       121 P~-t~l~a~ssr~~PIh~wdaftG~lraSy~~-------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt  186 (406)
T KOG2919|consen  121 PS-TNLFAVSSRDQPIHLWDAFTGKLRASYRA-------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDT  186 (406)
T ss_pred             Cc-cceeeeccccCceeeeeccccccccchhh-------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeec
Confidence            54 47999999999999999999986433221             12222   345899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccccCCCCceEeec-cc-CceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246           90 NMGLGPSPLSLSPEDLQKREEPQVYSG-HR-NSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  166 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  166 (285)
                      ....            +......++.. .. ...-|.+++| +| +.+.++.|+....+-+|.-....++..+.+|.+.|
T Consensus       187 ~RpG------------r~c~vy~t~~~~k~gq~giisc~a~-sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv  253 (406)
T KOG2919|consen  187 SRPG------------RDCPVYTTVTKGKFGQKGIISCFAF-SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV  253 (406)
T ss_pred             cCCC------------CCCcchhhhhcccccccceeeeeec-cCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence            5431            00011111111 11 1123778887 66 55688999999999999988889999999999999


Q ss_pred             eEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC--CCCCCCCcccceeecc--ccCCCceEEEeCCCCeEEEEEecc
Q 023246          167 NQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +.+.|+++|+.|.+|. .|..|..||++...  +..+..|.........  ..+.++.+++|+.||.|++||++.
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            9999999999999887 46789999998654  3344434331111111  234567899999999999999988

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=2e-19  Score=137.04  Aligned_cols=157  Identities=15%  Similarity=0.218  Sum_probs=128.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ..|.++.|+|-...+|+++..|++|.|||++.+..+...                --...-+.|+|+|.+-.|+++ .|.
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV----------------i~~mRTN~IswnPeafnF~~a~ED~  251 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV----------------ILTMRTNTICWNPEAFNFVAANEDH  251 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCCcccee----------------eeeccccceecCccccceeeccccc
Confidence            357899999987789999999999999999988743221                112345689999977666666 499


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec-
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-  161 (285)
                      .++.||++...               ..+..+.+|.+.  |.++.| +|.|+.+++|+.|.+|+||..+.+..-..... 
T Consensus       252 nlY~~DmR~l~---------------~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk  313 (433)
T KOG0268|consen  252 NLYTYDMRNLS---------------RPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK  313 (433)
T ss_pred             cceehhhhhhc---------------ccchhhccccee--EEEecc-CCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence            99999998764               577888899977  999998 99999999999999999999987754433321 


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      .-+.|.++.|+-|.+++++|+.|+.|++|....
T Consensus       314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            236799999999999999999999999998653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.2e-18  Score=128.96  Aligned_cols=195  Identities=14%  Similarity=0.222  Sum_probs=143.1

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEE-ecCCcEEEEEcCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS-YNDELVYLFEKNMGL   93 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s-~~d~~i~iwd~~~~~   93 (285)
                      ..+|++.+.|+|++||..+++.+              ..+ .+|...+..+.|..+  .+.+.+ ++||+|++||++...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~  105 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA  105 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence            56999999999999999998632              222 677778888999874  456666 469999999998762


Q ss_pred             CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC----CCeEEEEecCCCce-EEEE-ecccccce
Q 023246           94 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN  167 (285)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~vwd~~~~~~-~~~~-~~h~~~v~  167 (285)
                                    ......+..+. +.+..+++. +-+++.+++|..    +-.|.+||++..+. +..+ ..|...|+
T Consensus       106 --------------e~a~~~~~~~~-~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen  106 --------------ESARISWTQQS-GTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             --------------hhhheeccCCC-CCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence                          01122233333 223566664 557778888764    77899999998776 6555 47999999


Q ss_pred             EeEEcCCCC-eEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246          168 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       168 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                      ++.|+|..+ +|++|+.||.|.++|++...    +.....+...+-.+.|....-..+.+.+......+|++..+.....
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            999999655 69999999999999996553    3344446666777777666544688899999999999988764433

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.80  E-value=5.8e-18  Score=139.76  Aligned_cols=248  Identities=11%  Similarity=0.148  Sum_probs=164.4

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec------------CCC
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN------------TSE   74 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~------------~~~   74 (285)
                      -++.|+|++ ..|.+.-.|..++|||++.-.....          +  ...-.|...|+.+.--|            .+.
T Consensus       328 IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk----------~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c  394 (1080)
T KOG1408|consen  328 IACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGK----------C--SSMLYHSACIWDVENLPCNVHSPTAACLPRGC  394 (1080)
T ss_pred             eEEEecCCC-ceEEEEEcCceEEEEeccccccccc----------e--eeeeeccceeeeeccccccccCcccccCCccc
Confidence            367899986 7888899999999999986542211          1  11134666666665544            233


Q ss_pred             EEEEecCCcEEEEEcCCCCCCCC-----C-----CCCCcc------------ccCCCCceEeecccCceeeeeEEEecCC
Q 023246           75 LLISYNDELVYLFEKNMGLGPSP-----L-----SLSPED------------LQKREEPQVYSGHRNSQTVKGVNFFGPN  132 (285)
Q Consensus        75 ~l~s~~d~~i~iwd~~~~~~~~~-----~-----~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (285)
                      ++.+++|++|++|++........     .     .+...+            +........ ...+.  .+.+++. +|+
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~-~d~r~--G~R~~~v-Sp~  470 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST-CDSRF--GFRALAV-SPD  470 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh-cCccc--ceEEEEE-CCC
Confidence            44446799999999986320000     0     000000            000001111 12232  3899997 999


Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcC---CCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccc
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP---HIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKI  207 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~  207 (285)
                      +++|++|..-|+++||++...+.+..+.+|...|.|+.++.   ..++|++++.|..|++||.....  ++++.+|...+
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99999999999999999999888889999999999999974   34569999999999999985432  34455544443


Q ss_pred             eeeccc------------------------------------------------cCCCceEEEeCCCCeEEEEEeccccc
Q 023246          208 MKANKQ------------------------------------------------GREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       208 ~~~~~~------------------------------------------------~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ..+...                                                .+...++++++.|..|+||+++++++
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence            222111                                                11234788999999999999999877


Q ss_pred             ceeEee-------------eccccccCCCCCcCeEEEeecCCCCC
Q 023246          240 LAYRER-------------RYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       240 ~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      ...++.             .|.+.+++....+..+-+++|..|+-
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence            766532             33344555555555677778877654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=4.8e-18  Score=126.14  Aligned_cols=190  Identities=13%  Similarity=0.150  Sum_probs=141.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-ec
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~~   80 (285)
                      .++++++.|+.-.++++.+.+-|-+..|||++++..            ..+++.+-.|...|..|+|...+. .||+ |.
T Consensus       150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga  217 (364)
T KOG0290|consen  150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA  217 (364)
T ss_pred             CCcccccccccCCcceeEeecccCeEEEEEEeeccc------------cceeeEEEecCcceeEEEeccCccceEEEecC
Confidence            368999999998889999999999999999998731            134555578999999999999774 7777 67


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCC-CceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKG-GKLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~-~~~~~~  158 (285)
                      ||.+++||++...               .....++......+...++|...+-+++++-. +...|.+.|++. ..++..
T Consensus       218 DGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  218 DGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             CCcEEEEEecccc---------------cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            9999999998762               22223333322344788886344667777744 456799999875 567899


Q ss_pred             EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC-------CCCCCCcccceeeccccCCCceE
Q 023246          159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-------PPLPDNAEKIMKANKQGREDHSR  220 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  220 (285)
                      +.+|++.|+.++|.|... .++||+.|..+.+||+.+...       ... .....+..+.|.+.....+
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEE
Confidence            999999999999999765 599999999999999865321       112 1445566777655444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.4e-17  Score=124.64  Aligned_cols=214  Identities=11%  Similarity=0.146  Sum_probs=146.7

Q ss_pred             ccceeEEEE-cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEEe
Q 023246            3 SIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISY   79 (285)
Q Consensus         3 ~~~v~~~~~-s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~   79 (285)
                      .+.|..+.| +|.=+..+|+++.|+++.||.-.....      +..-..+.....+......|+.++|.|..  -++|++
T Consensus        59 ~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~  132 (361)
T KOG2445|consen   59 DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA  132 (361)
T ss_pred             CCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence            467889999 455458999999999999998642211      11112233344446678899999999965  477775


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-------cccCceeeeeEEEecCC---CcEEEEecCC-----C
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------GHRNSQTVKGVNFFGPN---DEYVMSGSDC-----G  143 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~---~~~l~~~~~d-----g  143 (285)
                       .||.++||+....          .++..+...+.++       .+..  ...|+.| ++.   ..+|+.|+.+     +
T Consensus       133 ~aDG~lRIYEA~dp----------~nLs~W~Lq~Ei~~~~~pp~~~~~--~~~CvsW-n~sr~~~p~iAvgs~e~a~~~~  199 (361)
T KOG2445|consen  133 SADGILRIYEAPDP----------MNLSQWTLQHEIQNVIDPPGKNKQ--PCFCVSW-NPSRMHEPLIAVGSDEDAPHLN  199 (361)
T ss_pred             ccCcEEEEEecCCc----------cccccchhhhhhhhccCCcccccC--cceEEee-ccccccCceEEEEcccCCcccc
Confidence             5999999998654          3344444444444       2332  3677885 653   4578888776     5


Q ss_pred             eEEEEecCCC----ceEEEEecccccceEeEEcCC----CCeEEEEecCCcEEEEcCCCCC-------------------
Q 023246          144 HLFIWKKKGG----KLVRLMVGDRHVVNQLEPHPH----IPMFATCGIEKTVKLWAPMPTD-------------------  196 (285)
Q Consensus       144 ~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~----~~~l~t~~~d~~i~iwd~~~~~-------------------  196 (285)
                      .++||....+    ..+.++..|..+|++++|.|+    ..+||+++.|| |+||.+....                   
T Consensus       200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v  278 (361)
T KOG2445|consen  200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV  278 (361)
T ss_pred             ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence            7888875433    245677899999999999995    34599999999 9999976311                   


Q ss_pred             --CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          197 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       197 --~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                        +..+.+|...+-...| ...+..+.+.+.||.|++|...-.
T Consensus       279 ~~vs~~~~H~~~VWrv~w-NmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  279 EKVSELDDHNGEVWRVRW-NMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EEeeeccCCCCceEEEEE-eeeeeEEeecCCCceeeehhhhhh
Confidence              1224456666655544 334557888899999999975533

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=1.2e-17  Score=135.87  Aligned_cols=235  Identities=14%  Similarity=0.179  Sum_probs=157.3

Q ss_pred             EEEcC--CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEE
Q 023246            9 IVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY   85 (285)
Q Consensus         9 ~~~s~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~   85 (285)
                      ..|++  ....+||.+..||.|.++|.........   +      +.......|...|..+.|.|....|++. .|.+++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e---e------~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r  125 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE---E------RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIR  125 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchh---h------hhhcccccccceeEeeccCCCceeEEEccCCceee
Confidence            45654  3447999999999999999875542100   0      1112226899999999999944567774 599999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceE--eecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---------
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---------  154 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---------  154 (285)
                      +||+...                ++...  +.+|...  +.+++|...+...|++|+.||.|.|||++-..         
T Consensus       126 ~Wdvk~s----------------~l~G~~~~~GH~~S--vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~  187 (720)
T KOG0321|consen  126 PWDVKTS----------------RLVGGRLNLGHTGS--VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN  187 (720)
T ss_pred             eeeeccc----------------eeecceeecccccc--cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence            9999887                45544  8899977  99999844456678999999999999986321         


Q ss_pred             ------------------eEEEEecccccceE---eEEcCCCCeEEEEec-CCcEEEEcCCCCCC---------CCCCCC
Q 023246          155 ------------------LVRLMVGDRHVVNQ---LEPHPHIPMFATCGI-EKTVKLWAPMPTDF---------PPLPDN  203 (285)
Q Consensus       155 ------------------~~~~~~~h~~~v~~---~~~~p~~~~l~t~~~-d~~i~iwd~~~~~~---------~~~~~~  203 (285)
                                        .++..++|...|.+   +.+..|...||+++. |+.|++||++....         ..+..+
T Consensus       188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~  267 (720)
T KOG0321|consen  188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH  267 (720)
T ss_pred             hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc
Confidence                              01122234445555   556678889999997 99999999975421         122223


Q ss_pred             ccc---ceeeccccCCCceEEEeCCCCeEEEEEecccccce--------------eEeeeccccccCCCCCcCeEEEeec
Q 023246          204 AEK---IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA--------------YRERRYNAADFESDEEEGETYLLGF  266 (285)
Q Consensus       204 ~~~---~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~  266 (285)
                      ...   +..+.. ...+.++++-+.|+.|++|++.+..+-.              +-..+++...+.++..+...|.+-.
T Consensus       268 skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~v  346 (720)
T KOG0321|consen  268 SKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVV  346 (720)
T ss_pred             ccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeee
Confidence            111   222221 1223466666669999999998643211              1145677888888877777887766


Q ss_pred             CCCCC
Q 023246          267 SDSDA  271 (285)
Q Consensus       267 ~~~~~  271 (285)
                      +.-+.
T Consensus       347 s~~e~  351 (720)
T KOG0321|consen  347 SSPEA  351 (720)
T ss_pred             cCccC
Confidence            55433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=2.2e-18  Score=133.18  Aligned_cols=181  Identities=16%  Similarity=0.242  Sum_probs=141.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ...+|.++.|.+...+.+|||+.|..|+||-+..++....      .........+..|...|+++.|+|+|++||+|. 
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D   85 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD   85 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence            3568899999997655999999999999999987653211      011123344478999999999999999999975 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCcc--ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      +|.|.+|-...-. +..... ..+  ...+...+.+.+|...  +..++| +++++++++++.|..+++||+..|+.+..
T Consensus        86 ~g~v~lWk~~~~~-~~~~d~-e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~  160 (434)
T KOG1009|consen   86 GGEVFLWKQGDVR-IFDADT-EADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAI  160 (434)
T ss_pred             CceEEEEEecCcC-Cccccc-hhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEee
Confidence            8999999876321 101100 011  1224455677788866  999995 99999999999999999999999999999


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      +..|...|..++|.|.++++++-+.|...+.+.+.
T Consensus       161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            99999999999999999999999999877666654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.79  E-value=1.3e-17  Score=136.86  Aligned_cols=218  Identities=15%  Similarity=0.186  Sum_probs=158.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      +.|..++|+|.| .+|++.+.|.+-|++---..+.        ....+..+   .-|...++|++|-+....|++| ..+
T Consensus       362 ~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~--------~wHEiaRP---QiHGyDl~c~~~vn~~~~FVSgAdEK  429 (764)
T KOG1063|consen  362 DGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ--------EWHEIARP---QIHGYDLTCLSFVNEDLQFVSGADEK  429 (764)
T ss_pred             ccceeeeecCCC-CEEEEeccccceeeeccccccc--------ceeeeccc---ccccccceeeehccCCceeeecccce
Confidence            578999999976 8999999999999986542210        01111111   4588889999999865666775 578


Q ss_pred             cEEEEEcCCCC---------------------------CCCCCCCCC---cc----------------------------
Q 023246           83 LVYLFEKNMGL---------------------------GPSPLSLSP---ED----------------------------  104 (285)
Q Consensus        83 ~i~iwd~~~~~---------------------------~~~~~~~~~---~~----------------------------  104 (285)
                      .+++|+.....                           +.....+-.   ..                            
T Consensus       430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL  509 (764)
T KOG1063|consen  430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL  509 (764)
T ss_pred             eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence            88999985322                           000000000   00                            


Q ss_pred             --ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC-----CeEEEEecCCCceEEEEecccccceEeEEcCCCCe
Q 023246          105 --LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM  177 (285)
Q Consensus       105 --~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  177 (285)
                        ..-+..++.+.+|...  |++++. +|+++++++++..     ..|++|+..+-.....+.+|.-.|+.++|+|++++
T Consensus       510 q~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~  586 (764)
T KOG1063|consen  510 QQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY  586 (764)
T ss_pred             HHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence              1112345667788877  999998 9999999998763     46999999988888899999999999999999999


Q ss_pred             EEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          178 FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       178 l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      |++.+.|.++.+|.......     ...+.|. +++-...+.+++.+++++|.|.+|++|.....
T Consensus       587 LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~Ht-RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  587 LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHT-RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEeecCceEEeeeeecccchhhhhccccccc-eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999998744322     1233343 44444445677778999999999999998776

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.79  E-value=7.8e-17  Score=128.08  Aligned_cols=231  Identities=14%  Similarity=0.217  Sum_probs=163.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      +..|....|+|.+++++++.+. +.+..|+.+.+.+.+..           ..+.......|.|++|.++|..+..-++|
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~-----------~~fek~ekk~Vl~v~F~engdviTgDS~G  267 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQ-----------GIFEKREKKFVLCVTFLENGDVITGDSGG  267 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEe-----------eccccccceEEEEEEEcCCCCEEeecCCc
Confidence            3456788999998888887765 88999999887643221           11112223679999999999988888899


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-------
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-------  155 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-------  155 (285)
                      .|.||+..+.                +..+....|...  |.+++. -.+|.++- |+.|+.|..||-.-.+.       
T Consensus       268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe  327 (626)
T KOG2106|consen  268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLLS-GGKDRKIILWDDNYRKLRETELPE  327 (626)
T ss_pred             eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEee-cCccceEEeccccccccccccCch
Confidence            9999999766                455555578866  999986 67776555 99999999999321100       


Q ss_pred             ----EE-----------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC
Q 023246          156 ----VR-----------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD  202 (285)
Q Consensus       156 ----~~-----------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~  202 (285)
                          ++                             ...+|......++.+|+.+.++|++.|+.+++|+-.......+  
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~--  405 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI--  405 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE--
Confidence                00                             2246777889999999999999999999999999211111111  


Q ss_pred             CcccceeeccccCCCceEEEeCCCCeEEEEEecccc---------cceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      -..+..+..  ......++.|+..|...+.|..+..         ++.....+|++..++.++.++.+|++..+.+
T Consensus       406 ~~d~~~~~~--fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  406 IEDPAECAD--FHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             ecCceeEee--ccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            111222221  2223378888889999998887643         3444567888888888888888998887654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=1.2e-17  Score=132.53  Aligned_cols=232  Identities=14%  Similarity=0.092  Sum_probs=167.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .+.++.|+..+--.+++.+.|..+++|.-....  ..         ........+  ..-.|++......+++++ ..+.
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~---------Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PE---------VPRVRKLTG--DNAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCC--Cc---------cceeecccc--chHHHHhhhhcceeeeccCcCce
Confidence            478899999652223334568889999754321  00         011111111  123344444445788885 5999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc-
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-  162 (285)
                      |+|||++..                .+.+.+.+|+..  |+++.| +....||++++..|.|.+..+.++.....|... 
T Consensus       103 Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s  163 (673)
T KOG4378|consen  103 VKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS  163 (673)
T ss_pred             eeehhhHHH----------------HHhhhccCCcce--eEEEEe-cCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence            999999876                566778889855  999998 888899999999999999999998888777644 


Q ss_pred             cccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCC--CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          163 RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ...|.-+.++|..+. |.+++.+|.|.+||..+...  .....|..+...+........++++.+-|..|.+||.+.+..
T Consensus       164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence            345668999998877 78889999999999987653  334456666555555555677899999999999999987654


Q ss_pred             cee---------EeeeccccccCCCCCcCeEEEeecCC
Q 023246          240 LAY---------RERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       240 ~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      ...         +.+.+++..|..+...|++|.+++..
T Consensus       244 ~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  244 TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            433         35677788888888888888888654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=6.3e-18  Score=137.91  Aligned_cols=208  Identities=14%  Similarity=0.193  Sum_probs=151.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-   79 (285)
                      ++.-|+.+.|+|.+...||+++.||.|++|.+..+.+...        ...+..++..|...|+++.|+|-. ..|+++ 
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~as  697 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAVAS  697 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence            4567999999998889999999999999999987653221        114555568899999999999965 477775 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL  158 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~  158 (285)
                      .|-+|++||+.+.                +....+.+|++.  |.+++| +|+|+.+++.+.||+|++|+-+.++ +++.
T Consensus       698 yd~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW-SpdGr~~AtVcKDg~~rVy~Prs~e~pv~E  758 (1012)
T KOG1445|consen  698 YDSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW-SPDGRRIATVCKDGTLRVYEPRSREQPVYE  758 (1012)
T ss_pred             ccceeeeeehhhh----------------hhhheeccCcCc--eeEEEE-CCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence            5999999999988                678889999988  999995 9999999999999999999987654 4444


Q ss_pred             Eeccc-ccceEeEEcCCCCeEEEEecCC----cEEEEcCCCCCCCC-----CCCCcccceeeccccCCCceEEEeCCCCe
Q 023246          159 MVGDR-HVVNQLEPHPHIPMFATCGIEK----TVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       159 ~~~h~-~~v~~~~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                      -++.. ..-..+.|--+|++++..+.|+    .|.+||...-....     +....... -.......+-++++|-.|..
T Consensus       759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L-vP~YD~Ds~~lfltGKGD~~  837 (1012)
T KOG1445|consen  759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL-VPHYDYDSNVLFLTGKGDRF  837 (1012)
T ss_pred             CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc-cccccCCCceEEEecCCCce
Confidence            33221 2234467777899987777664    68888865433211     11111111 11111112347899999999


Q ss_pred             EEEEEeccc
Q 023246          229 MHVLRLQRR  237 (285)
Q Consensus       229 i~vwd~~~~  237 (285)
                      |++|.+-..
T Consensus       838 v~~yEv~~e  846 (1012)
T KOG1445|consen  838 VNMYEVIYE  846 (1012)
T ss_pred             EEEEEecCC
Confidence            999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1e-16  Score=120.71  Aligned_cols=212  Identities=12%  Similarity=0.136  Sum_probs=147.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .-+.+.|+||-..++++.-...++++|-+...+-- ..  .-+...+...++...|...+..+-....+.++++++ |..
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG-~~--~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~  210 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG-SG--SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK  210 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccC-CC--CcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence            34679999987667777777889999988654311 00  001111122234467888888888888889999965 999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---CC-----ce
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GG-----KL  155 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~~-----~~  155 (285)
                      |++|++. +                +.+..+......  .+..+. +|+|+++++++..--|++|..-   .|     ..
T Consensus       211 i~lw~lk-G----------------q~L~~idtnq~~--n~~aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r  270 (420)
T KOG2096|consen  211 ICLWDLK-G----------------QLLQSIDTNQSS--NYDAAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR  270 (420)
T ss_pred             EEEEecC-C----------------ceeeeecccccc--ccceee-CCCCcEEEEecCCCCceEEEEEeccCcchhhhhh
Confidence            9999998 4                466776665544  566675 9999999999999999999853   22     24


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-----CCCCCC-------CCcccceeeccccCCCceEEEe
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLP-------DNAEKIMKANKQGREDHSRITL  223 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  223 (285)
                      +..+++|++.|..++|+|+...++|.+.||++++||.+-.     ....++       ........+.. + .+...++.
T Consensus       271 vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l-s-P~g~~lA~  348 (420)
T KOG2096|consen  271 VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL-S-PSGDSLAV  348 (420)
T ss_pred             hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe-C-CCCcEEEe
Confidence            6788999999999999999999999999999999997522     111111       11122223322 1 22345566


Q ss_pred             CCCCeEEEEEecccccce
Q 023246          224 TPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       224 s~d~~i~vwd~~~~~~~~  241 (285)
                      +....++++..++++...
T Consensus       349 s~gs~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  349 SFGSDLKVFASEDGKDYP  366 (420)
T ss_pred             ecCCceEEEEcccCccch
Confidence            667788999887765443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.1e-16  Score=131.28  Aligned_cols=199  Identities=14%  Similarity=0.192  Sum_probs=149.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      .+.|++++.+|.+ ..++.|+.||.+..++...++.             .....+...+++|.+++|+|++..+++|+ |
T Consensus       110 gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I-------------~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen  110 GGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKI-------------TYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             CcceeEEEeCCcc-ceEEeecCCceEEEEecCCceE-------------EEEeecccccceEEEEEecCCccEEEecccC
Confidence            5789999999975 8999999999777777776653             22333345578999999999999888875 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCce-----Eeeccc-CceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHR-NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      |.|++||...+                ..++     ...... .+.-|.++.|.  ....+++|...|+|.+||...+.+
T Consensus       176 g~Iriwd~~~~----------------~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTL  237 (691)
T KOG2048|consen  176 GVIRIWDVKSG----------------QTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTL  237 (691)
T ss_pred             ceEEEEEcCCC----------------ceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcch
Confidence            99999999887                2322     111111 22237888874  455899999999999999999999


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      +..+..|...|.+++..+++.++++++.|+.|..+...+.+-     .....|...+.+......   .+++|+.|..+.
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~  314 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLA  314 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEE
Confidence            999999999999999999999999999999998888765521     112224433433322222   788899998888


Q ss_pred             EEEecc
Q 023246          231 VLRLQR  236 (285)
Q Consensus       231 vwd~~~  236 (285)
                      +=..+.
T Consensus       315 i~~s~~  320 (691)
T KOG2048|consen  315 ICSSRE  320 (691)
T ss_pred             Eccccc
Confidence            876655

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.77  E-value=1.5e-17  Score=125.46  Aligned_cols=216  Identities=14%  Similarity=0.157  Sum_probs=147.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|+.+.++|++++++++++.|.+||+|++++..++            ++..=..+|.+.|.++.|+++|.+++++ .|
T Consensus       135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv------------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD  202 (385)
T KOG1034|consen  135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV------------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMD  202 (385)
T ss_pred             CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE------------EEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence            5689999999999999999999999999999998744            2222237899999999999999999995 59


Q ss_pred             CcEEEEEcCCCCCCC------CC--CCCCccccCC-CCce---EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246           82 ELVYLFEKNMGLGPS------PL--SLSPEDLQKR-EEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  149 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~------~~--~~~~~~~~~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd  149 (285)
                      ..|.+|++....-..      ..  ......+++. ....   +-..|++.  |-|+.|+   |.++++-+-++.|..|.
T Consensus       203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny--VDCvrw~---gd~ilSkscenaI~~w~  277 (385)
T KOG1034|consen  203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY--VDCVRWF---GDFILSKSCENAIVCWK  277 (385)
T ss_pred             ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch--HHHHHHH---hhheeecccCceEEEEe
Confidence            999999998443000      00  0000001111 0111   22335544  7777763   68999999999999998


Q ss_pred             c-CCCc-------------eEEEEecccccceEe--EEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC----Cccccee
Q 023246          150 K-KGGK-------------LVRLMVGDRHVVNQL--EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD----NAEKIMK  209 (285)
Q Consensus       150 ~-~~~~-------------~~~~~~~h~~~v~~~--~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~  209 (285)
                      . +-++             .+..+......|.-+  +|+|-+++||.|...|.|.+||++.........    .....+.
T Consensus       278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR  357 (385)
T KOG1034|consen  278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR  357 (385)
T ss_pred             cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence            6 2111             233444444555555  456778899999999999999997665422211    1222333


Q ss_pred             eccccCCCceEEEeCCCCeEEEEEec
Q 023246          210 ANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ....+.++..++....|++|--||..
T Consensus       358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  358 QTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eeeecccCcEEEEEeCCCcEEEEEee
Confidence            33345567788999999999888854

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.6e-17  Score=135.64  Aligned_cols=193  Identities=14%  Similarity=0.146  Sum_probs=136.9

Q ss_pred             eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-ecCCcEEEEEcCCCCCCCCCC
Q 023246           22 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLS   99 (285)
Q Consensus        22 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~   99 (285)
                      .+..|.|-||++.....+.     ..    ....+  -....|+.+.|.|-. +.|+. +.||.|++|.+..+..+    
T Consensus       599 ~g~gG~iai~el~~PGrLP-----Dg----v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----  663 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLP-----DG----VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----  663 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCC-----cc----ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC----
Confidence            3557999999998543110     00    11122  134579999999954 56776 57999999999766311    


Q ss_pred             CCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEE
Q 023246          100 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA  179 (285)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  179 (285)
                           .........+..|..+  |+.+.|+.-....|++++.|-+|++||+.+++....+.+|++.|..++|+|+|+.++
T Consensus       664 -----e~~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A  736 (1012)
T KOG1445|consen  664 -----ENEMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA  736 (1012)
T ss_pred             -----cccCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence                 1122455677888876  999998444678899999999999999999999999999999999999999999999


Q ss_pred             EEecCCcEEEEcCCCCCC--CCCCCCc-ccceeeccccCCCceEEEeCC----CCeEEEEEeccc
Q 023246          180 TCGIEKTVKLWAPMPTDF--PPLPDNA-EKIMKANKQGREDHSRITLTP----DVIMHVLRLQRR  237 (285)
Q Consensus       180 t~~~d~~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~s~----d~~i~vwd~~~~  237 (285)
                      +.+.||+|++|+++.++.  ..-.+.. .+--.+.| .-++++++..+-    ..+|.+||.+.-
T Consensus       737 tVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w-acdgr~viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW-ACDGRIVIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             eeecCceEEEeCCCCCCCccccCCCCccCcceeEEE-EecCcEEEEecccccchhhhhhhhhhhc
Confidence            999999999999987753  2222221 11222333 234455544333    477888887653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=9.7e-18  Score=135.66  Aligned_cols=225  Identities=16%  Similarity=0.225  Sum_probs=158.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccc-------------------------------
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-------------------------------   51 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------------------------------   51 (285)
                      .+.|.+++.+|. +..|++|+.||+|+||.+.+++++..+..+..+...                               
T Consensus       400 tg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e  478 (733)
T KOG0650|consen  400 TGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE  478 (733)
T ss_pred             CCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhh
Confidence            567999999996 499999999999999999999876554432211110                               


Q ss_pred             ------------------------ccc---------ccCCCCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCC
Q 023246           52 ------------------------CPR---------HLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLG   94 (285)
Q Consensus        52 ------------------------~~~---------~~~~~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~   94 (285)
                                              ...         .+.-.|..+|+.+.|+..|.||++..    ...|.|+++.....
T Consensus       479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s  558 (733)
T KOG0650|consen  479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS  558 (733)
T ss_pred             hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence                                    000         01124677899999999999999832    46799999976663


Q ss_pred             CCCCCCC-------------------------CccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246           95 PSPLSLS-------------------------PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  149 (285)
Q Consensus        95 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd  149 (285)
                      ..+-..+                         ..++.+...++.+..  +...|..+++ +|.|..++.|+.|+.+..||
T Consensus       559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t--g~kwiS~msi-hp~GDnli~gs~d~k~~WfD  635 (733)
T KOG0650|consen  559 QSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT--GSKWISSMSI-HPNGDNLILGSYDKKMCWFD  635 (733)
T ss_pred             cCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc--CCeeeeeeee-cCCCCeEEEecCCCeeEEEE
Confidence            3221111                         111111122222222  2244788887 89999999999999999999


Q ss_pred             cCCC-ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC-------CCC---CCCCCCCccc----ceeecccc
Q 023246          150 KKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-------PTD---FPPLPDNAEK----IMKANKQG  214 (285)
Q Consensus       150 ~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-------~~~---~~~~~~~~~~----~~~~~~~~  214 (285)
                      +.-+ ++..++..|...+++|+|++.-.+|++|+.||++.++.-.       +..   +..+.+|...    +....| .
T Consensus       636 ldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w-H  714 (733)
T KOG0650|consen  636 LDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW-H  714 (733)
T ss_pred             cccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc-c
Confidence            8744 5778888899999999999999999999999999988531       111   3456666554    444433 3


Q ss_pred             CCCceEEEeCCCCeEEEE
Q 023246          215 REDHSRITLTPDVIMHVL  232 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vw  232 (285)
                      +....+++++.||+|++|
T Consensus       715 P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  715 PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCCceEEecCCCceEEee
Confidence            455688999999999998

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.5e-17  Score=132.33  Aligned_cols=219  Identities=11%  Similarity=0.165  Sum_probs=156.5

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .|..++|+|-. ..|++++.||++++|++..... .....-.|+.      .+.+|.++|.|++.+++++.+.+|. ||+
T Consensus       296 ~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~-s~~~~~epi~------tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  296 CIRALAFHPSE-PVLITASEDGTLKLWNLQKAKK-SAEKDVEPIL------TFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             hhhhhhcCCCC-CeEEEeccccchhhhhhcccCC-ccccceeeeE------EEecccCceEEEEecCCceEEEeeccCce
Confidence            46678888864 7999999999999999943211 1111112333      3389999999999999999999965 999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE-E-----
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-R-----  157 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~-----  157 (285)
                      |+.|++.....+    ...  ..+......+.+|...  +..+++ ++....|++++.||+++.|+.....+. .     
T Consensus       368 I~~w~~p~n~dp----~ds--~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e  438 (577)
T KOG0642|consen  368 IRCWNLPPNQDP----DDS--YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKE  438 (577)
T ss_pred             eeeeccCCCCCc----ccc--cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccCCccc
Confidence            999988622100    000  1111345678899987  999998 888888999999999999996543330 0     


Q ss_pred             --------------------------------------EEe-------cccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          158 --------------------------------------LMV-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       158 --------------------------------------~~~-------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                                                            .+.       .....+.-+.++|.....+++..|+.|+++|.
T Consensus       439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn  518 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN  518 (577)
T ss_pred             cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence                                                  000       00134667888999999999999999999999


Q ss_pred             CCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          193 MPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       193 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      ..+++ .....|...+..+. ..+.+.++++++.|+.+++|.+..+....
T Consensus       519 ~~~~~l~s~~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  519 KTGKILHSMVAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cccccchheeeccceeccee-ecCCCceEEeecCCceeehhhccchheee
Confidence            88774 55555555543332 24456699999999999999987765543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=3e-18  Score=143.51  Aligned_cols=231  Identities=16%  Similarity=0.298  Sum_probs=171.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++..|.|+.|...+ .++++|+.|..|+||.+.+..              |...+ .+|.+.|+.++.+....++++++ 
T Consensus       189 H~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~iaaaS~  252 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIAAASN  252 (1113)
T ss_pred             hhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhhhccc
Confidence            34579999999975 999999999999999999887              55555 89999999999999988888865 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE---
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR---  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~---  157 (285)
                      |..|++|.+..+                .++..+.+|++.  |++++| +|-.    +.+.||++++||.+-.-.+.   
T Consensus       253 D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~y~pr  309 (1113)
T KOG0644|consen  253 DKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRIYVPR  309 (1113)
T ss_pred             CceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccccCCC
Confidence            999999999988                789999999988  999998 8765    77899999999987110000   


Q ss_pred             -----------EE----------------ecccccceEeEEcCCCCeEEE-----------EecCCcEEEEcCCCCC-CC
Q 023246          158 -----------LM----------------VGDRHVVNQLEPHPHIPMFAT-----------CGIEKTVKLWAPMPTD-FP  198 (285)
Q Consensus       158 -----------~~----------------~~h~~~v~~~~~~p~~~~l~t-----------~~~d~~i~iwd~~~~~-~~  198 (285)
                                 .+                .+.......++|....-.+++           +-.+..+++|++..+. .+
T Consensus       310 p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H  389 (1113)
T KOG0644|consen  310 PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH  389 (1113)
T ss_pred             CCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence                       00                000111222333332222333           3344557778876664 45


Q ss_pred             CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee----------EeeeccccccCCCCCcCeEEEeecCC
Q 023246          199 PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      .+.+|...++.+..-..+.+...++..||...|||+-.+-.+..          ..++++++.++..++-|.+|+.++..
T Consensus       390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCC
Confidence            66667777666655555677888999999999999987644332          25788888999999999999999877


Q ss_pred             CCC
Q 023246          269 SDA  271 (285)
Q Consensus       269 ~~~  271 (285)
                      ++.
T Consensus       470 s~s  472 (1113)
T KOG0644|consen  470 SKS  472 (1113)
T ss_pred             Ccc
Confidence            654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.76  E-value=5.1e-16  Score=123.51  Aligned_cols=209  Identities=11%  Similarity=0.121  Sum_probs=155.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      |.-|.|++|.+++  -++||.++|.|.||+..+.+              ..+.. ..|.+.|.+++.-.+|.+|..+.|.
T Consensus       246 kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------~~k~~-~aH~ggv~~L~~lr~GtllSGgKDR  308 (626)
T KOG2106|consen  246 KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------ISKQV-HAHDGGVFSLCMLRDGTLLSGGKDR  308 (626)
T ss_pred             ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------EEeEe-eecCCceEEEEEecCccEeecCccc
Confidence            3679999999964  68899999999999997665              33344 3899999999999999998855699


Q ss_pred             cEEEEEcCCCCCCCCCCCCCcc--------------------------ccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPED--------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      .|..||-.... ..+.++....                          +.+ .......+|...  ...++. .|+.+.+
T Consensus       309 ki~~Wd~~y~k-~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~-~f~~~v~gh~de--lwgla~-hps~~q~  383 (626)
T KOG2106|consen  309 KIILWDDNYRK-LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN-GFTLTVQGHGDE--LWGLAT-HPSKNQL  383 (626)
T ss_pred             eEEeccccccc-cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC-CceEEEEecccc--eeeEEc-CCChhhe
Confidence            99999943221 1111111000                          000 112223456655  788886 8999999


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCC
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRE  216 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (285)
                      ++++.|+.+++|+  ..+++.+.. -..++.++.|+|.| .++.|...|...+.|.++..+.++... ...+.....+++
T Consensus       384 ~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~  458 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD  458 (626)
T ss_pred             eeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence            9999999999999  456665544 35789999999999 999999999999999988766555444 334455555777


Q ss_pred             CceEEEeCCCCeEEEEEecccc
Q 023246          217 DHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       217 ~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      +.+++.++.|+.|++|.+....
T Consensus       459 G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  459 GAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             CCEEEEecCCCeEEEEEECCCC
Confidence            8899999999999999987653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.76  E-value=1.5e-16  Score=124.88  Aligned_cols=233  Identities=13%  Similarity=0.056  Sum_probs=159.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      +.++|.++.|+|.+...+++.+.||+|++-|++.......            ..+ ......+..+.|+.+...++. ..
T Consensus       233 hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v------------~s~-~~d~~~fs~~d~~~e~~~vl~~~~  299 (498)
T KOG4328|consen  233 HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV------------LSL-DTDNIWFSSLDFSAESRSVLFGDN  299 (498)
T ss_pred             CCccccceEecCCChhheeeeccCceeeeeeecchhhHHH------------hhc-CccceeeeeccccCCCccEEEeec
Confidence            3578999999999989999999999999999997642111            111 123445677888887765555 45


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc----eE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK----LV  156 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----~~  156 (285)
                      =|.+.+||.++..               .....+.-|...  |.+++++.-...++++++.|++++|||++.-.    ++
T Consensus       300 ~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~  362 (498)
T KOG4328|consen  300 VGNFNVIDLRTDG---------------SEYENLRLHKKK--ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF  362 (498)
T ss_pred             ccceEEEEeecCC---------------ccchhhhhhhcc--cceeecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence            5699999999873               234455566654  99999833356788999999999999987522    23


Q ss_pred             EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC----CCCCCCCCCCc----cc--ceeeccccCCCceEEEeCCC
Q 023246          157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTDFPPLPDNA----EK--IMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~----~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~s~d  226 (285)
                      .....|...|.+..|+|++-.|+|.+.|..|+|||..    ..+......|.    ..  .+...| .++..+++.+.--
T Consensus       363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~vg~~~  441 (498)
T KOG4328|consen  363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVVGRYP  441 (498)
T ss_pred             eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhhee-CCCccEEEEeccC
Confidence            3344699999999999998889999999999999974    21221111122    11  123333 3455678888888


Q ss_pred             CeEEEEEecccccceeE------------eeecccc-ccCCCCCcCeEEEee
Q 023246          227 VIMHVLRLQRRQTLAYR------------ERRYNAA-DFESDEEEGETYLLG  265 (285)
Q Consensus       227 ~~i~vwd~~~~~~~~~~------------~~~~~~~-~~~~~~~~~~v~~~~  265 (285)
                      ..|-|+|-..++.+..+            +..|-.. .++++...|.+|++-
T Consensus       442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            88999987666533221            2233222 345556667777654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.9e-16  Score=122.75  Aligned_cols=231  Identities=11%  Similarity=0.147  Sum_probs=162.3

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCC-CcceEEEEEecCCCEEEE-
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLIS-   78 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s-   78 (285)
                      +.+.||.+..|.|+|...+++++....+..||+.+.+..+.            ... .++ ...+.....++++++|+. 
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~------------~~~-~g~e~~~~e~FeVShd~~fia~~  321 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL------------KPP-YGVEEKSMERFEVSHDSNFIAIA  321 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccccccccc------------cCC-CCcccchhheeEecCCCCeEEEc
Confidence            35678999999998755999999999999999998874321            111 222 346778889999998888 


Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      |..|.|++....++                +.+..++-..   .+..++| +.+++.|++.+.+|.|++||++...+++.
T Consensus       322 G~~G~I~lLhakT~----------------eli~s~KieG---~v~~~~f-sSdsk~l~~~~~~GeV~v~nl~~~~~~~r  381 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTK----------------ELITSFKIEG---VVSDFTF-SSDSKELLASGGTGEVYVWNLRQNSCLHR  381 (514)
T ss_pred             ccCceEEeehhhhh----------------hhhheeeecc---EEeeEEE-ecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence            67999999999888                6777776433   2899997 88999999999999999999999999998


Q ss_pred             Eecccccc--eEeEEcCCCCeEEEEecCCcEEEEcCCCCC-------CCCCCCCcccceeeccccCCCceEEEeCC----
Q 023246          159 MVGDRHVV--NQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNAEKIMKANKQGREDHSRITLTP----  225 (285)
Q Consensus       159 ~~~h~~~v--~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----  225 (285)
                      +.. .+.|  ++++.++++.+||+|+..|.|.|||.++..       +..+..-...+..+ ...++..+++.+|.    
T Consensus       382 f~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl-~Fn~d~qiLAiaS~~~kn  459 (514)
T KOG2055|consen  382 FVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL-QFNHDAQILAIASRVKKN  459 (514)
T ss_pred             Eee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee-eeCcchhhhhhhhhcccc
Confidence            874 3444  456777999999999999999999964321       12222111222111 11222233222222    


Q ss_pred             ---------CCeEEEEEeccc--ccceeEeeeccccccCCCCCcCeEEEeec
Q 023246          226 ---------DVIMHVLRLQRR--QTLAYRERRYNAADFESDEEEGETYLLGF  266 (285)
Q Consensus       226 ---------d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  266 (285)
                               -....-|-....  ..+..+.++|.+..++.+.+.|+|-++.+
T Consensus       460 alrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  460 ALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence                     122222443432  23344589999999999999988877643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.74  E-value=1.4e-16  Score=127.47  Aligned_cols=153  Identities=17%  Similarity=0.223  Sum_probs=115.3

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc--ccCCcCCCCCcccccc-----------cccCCCCCcceEEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCP-----------RHLIGKNNIHITGLA   68 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~i~   68 (285)
                      .+.+|+|+.|-|-+..+|+.+-.+|.+.+||..-.-  ....+...+.-..|.+           .....--.+.|...+
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            457899999999777889999999999999863211  0000000000001100           000012245788999


Q ss_pred             EecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEE
Q 023246           69 YSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI  147 (285)
Q Consensus        69 ~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~v  147 (285)
                      |+|||++||+ +.||.++|||..+.                +++..++..-..  ..|++| +|||+||++|++|--|.|
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~----------------eLlg~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtV  358 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQ----------------ELLGVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTV  358 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHH----------------HHHHHHHhhccc--eEEEEE-cCCccEEEecCCcceEEE
Confidence            9999999999 67999999999876                566666555544  899995 999999999999999999


Q ss_pred             EecCCCceEEEEecccccceEeEEcC
Q 023246          148 WKKKGGKLVRLMVGDRHVVNQLEPHP  173 (285)
Q Consensus       148 wd~~~~~~~~~~~~h~~~v~~~~~~p  173 (285)
                      |.+..++.+..-++|.+.|..|+|+|
T Consensus       359 wSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  359 WSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEeccceEEEeccccccceeeEeecc
Confidence            99999999999999999999999997

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=7.3e-17  Score=125.45  Aligned_cols=195  Identities=12%  Similarity=0.116  Sum_probs=137.9

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEE
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVY   85 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~   85 (285)
                      .+++|+++| ..+++|+.||++|||+......              .... ..|...|.++.|+|||++|++ +.| ..+
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t--------------~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~  210 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLT--------------ILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR  210 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchh--------------hhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence            578999986 8999999999999999776542              1222 678889999999999999999 567 999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-----cEEEEecCCCeEEEEecCCCce-----
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL-----  155 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~dg~v~vwd~~~~~~-----  155 (285)
                      ||+.+++                ..+..............+.| +.++     ..++.....+.|..|++.....     
T Consensus       211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~  273 (398)
T KOG0771|consen  211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR  273 (398)
T ss_pred             EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence            9999988                34444442222223556666 6555     3334445566777776542211     


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      .++.......|.+++.+++|++++.|+.||.|-|++....+. +..+. |.. .+......++.+++++.+.+....+..
T Consensus       274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEEE
Confidence            112222235799999999999999999999999999866543 33332 444 445545567888888888898888887


Q ss_pred             ecc
Q 023246          234 LQR  236 (285)
Q Consensus       234 ~~~  236 (285)
                      +.-
T Consensus       353 l~v  355 (398)
T KOG0771|consen  353 LAV  355 (398)
T ss_pred             Eee
Confidence            765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=5.9e-16  Score=114.66  Aligned_cols=154  Identities=12%  Similarity=0.154  Sum_probs=109.4

Q ss_pred             eEEEEcCCCCcEEEEeeC---------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            7 NAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      ..+.|+|+|..+++....         -+...||.++....             ....+.....++|.+++|+|+|+.|+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-------------~~~~i~l~~~~~I~~~~WsP~g~~fa   75 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-------------PVESIELKKEGPIHDVAWSPNGNEFA   75 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-------------ccceeeccCCCceEEEEECcCCCEEE
Confidence            358899987555555541         13466666643321             11112123345799999999998765


Q ss_pred             E--ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---CCeEEEEecC
Q 023246           78 S--YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKK  151 (285)
Q Consensus        78 s--~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~vwd~~  151 (285)
                      .  |. +..|.+||++.                 +.+..+..  ..  +..+.| +|+|+++++++.   .|.|.+||.+
T Consensus        76 vi~g~~~~~v~lyd~~~-----------------~~i~~~~~--~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   76 VIYGSMPAKVTLYDVKG-----------------KKIFSFGT--QP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             EEEccCCcccEEEcCcc-----------------cEeEeecC--CC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEECC
Confidence            4  43 78999999963                 35555543  22  778885 999999999864   4679999999


Q ss_pred             CCceEEEEecccccceEeEEcCCCCeEEEEec------CCcEEEEcCCCCCC
Q 023246          152 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF  197 (285)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~  197 (285)
                      +.+.+.... | ..++.++|+|+|++|+++..      |..++||+..+..+
T Consensus       134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            888887765 3 35789999999999998874      77899999876654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.7e-16  Score=116.46  Aligned_cols=169  Identities=11%  Similarity=0.115  Sum_probs=124.2

Q ss_pred             cceeEEEEcCCC--CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            4 IRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         4 ~~v~~~~~s~~~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      +.++|..+.-+.  ..++++|-.+|.|.+||+.++..+..+.  +   .+....-...|..+|.++.|.+....=++ +.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~---~~kv~~~~ash~qpvlsldyas~~~rGisgga  225 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--Q---SSKVESPNASHKQPVLSLDYASSCDRGISGGA  225 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--c---ccccccchhhccCcceeeeechhhcCCcCCCc
Confidence            456676654322  2467788899999999999874321111  1   11222222578999999999876554444 44


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      +..+..|.++...            ...+...........  +..+.+ -||++.+++++-|+.|+||..++.+++..++
T Consensus       226 ~dkl~~~Sl~~s~------------gslq~~~e~~lknpG--v~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAVLk  290 (323)
T KOG0322|consen  226 DDKLVMYSLNHST------------GSLQIRKEITLKNPG--VSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAVLK  290 (323)
T ss_pred             cccceeeeecccc------------CcccccceEEecCCC--ccceEE-ccCCcEEeecccCCcEEEEEeccCCchhhhh
Confidence            7788899887541            111222222222222  788887 8999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      .|...|++++|+|+...+|.++.|++|.+|++
T Consensus       291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.72  E-value=4.8e-15  Score=111.97  Aligned_cols=243  Identities=9%  Similarity=0.142  Sum_probs=166.6

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe-------cCCCEEEEe
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLISY   79 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-------~~~~~l~s~   79 (285)
                      ..+.|+||| ..|++-+.|..+++|++...-.....  +.++..-....+.......|...+|-       |+..+++++
T Consensus        53 kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~--~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   53 KGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKA--DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             ccceeCCCC-ceEEeecccCeeeEEecChhhcccCC--CCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            468899986 78889999999999998743211110  11111101111111224467777776       455677775


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc--cCc-eeeeeEEEecCCCcEEEEecCCCeEEEEec-CCCc
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KGGK  154 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~-~~~~  154 (285)
                       .+.-|++||.-++                +....++..  ... ....+++| +|+|.+|++|. ...|++||+ +.|.
T Consensus       130 sr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaGy-krcirvFdt~RpGr  191 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAGY-KRCIRVFDTSRPGR  191 (406)
T ss_pred             cccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeecc-cceEEEeeccCCCC
Confidence             5999999999988                455555432  222 11467887 99999998776 689999998 5554


Q ss_pred             eEE---EE----ecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCC
Q 023246          155 LVR---LM----VGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTP  225 (285)
Q Consensus       155 ~~~---~~----~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  225 (285)
                      -..   ++    .+..+-+.+++|+|... .++.++.-..+-||.-..+. +..+.+|...+..+.|....++++.-+-.
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence            322   11    12357789999999766 68888888888888765554 56677888888888776666655555555


Q ss_pred             CCeEEEEEecccc--------------cceeEeeeccccccCCCCCcCeEEEeecCC-CC
Q 023246          226 DVIMHVLRLQRRQ--------------TLAYRERRYNAADFESDEEEGETYLLGFSD-SD  270 (285)
Q Consensus       226 d~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  270 (285)
                      +..|..||++...              +...+...+.+..|++++.+|.|-+++..+ |+
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            8999999998642              223345677788899999999999999877 55

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=2.6e-15  Score=115.15  Aligned_cols=157  Identities=16%  Similarity=0.224  Sum_probs=124.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--C
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN--D   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~--d   81 (285)
                      +|.++.++.+   .|++.-. ..|.|||+++.+++..+...            ..+...+.++++++.+.++|- ++  .
T Consensus        89 ~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~------------~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   89 SILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETT------------PPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             ceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhcc------------CCCccceEeeccCCCCceEEecCCCCC
Confidence            5677777773   3444433 45999999998865443211            234556777777777788887 43  8


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe-EEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~  160 (285)
                      |.|.+||..+-                +.+..+..|...  +-+++| +++|.+++++++.|+ |+|+.+.+|+.+.+|+
T Consensus       153 GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  153 GDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             ceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            99999999877                788889999977  999998 999999999999887 6799999999999997


Q ss_pred             cc--cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          161 GD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       161 ~h--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      .-  -..|.+++|+|++++|+..+..++|+++.+....
T Consensus       214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            32  2468899999999999999999999999986543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.71  E-value=1.1e-15  Score=125.83  Aligned_cols=202  Identities=14%  Similarity=0.184  Sum_probs=144.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCC-----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .-.|.+++.+|++ +++|+++...     .|++|+..+-.              ... .+.+|.-.|+.++|||+|++|+
T Consensus       525 GyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~--------------~~~-~L~~HsLTVT~l~FSpdg~~LL  588 (764)
T KOG1063|consen  525 GYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL--------------QVQ-ELEGHSLTVTRLAFSPDGRYLL  588 (764)
T ss_pred             ceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh--------------hhh-eecccceEEEEEEECCCCcEEE
Confidence            3479999999975 9999998754     48899987553              222 2378999999999999999988


Q ss_pred             E-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--c
Q 023246           78 S-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--K  154 (285)
Q Consensus        78 s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~  154 (285)
                      + +.|.++.+|.......            ........+.|+.-  |.++.| +|++.+++|++.|.+|++|.....  +
T Consensus       589 svsRDRt~sl~~~~~~~~------------~e~~fa~~k~HtRI--IWdcsW-~pde~~FaTaSRDK~VkVW~~~~~~d~  653 (764)
T KOG1063|consen  589 SVSRDRTVSLYEVQEDIK------------DEFRFACLKAHTRI--IWDCSW-SPDEKYFATASRDKKVKVWEEPDLRDK  653 (764)
T ss_pred             EeecCceEEeeeeecccc------------hhhhhccccccceE--EEEccc-CcccceeEEecCCceEEEEeccCchhh
Confidence            8 5699999999865410            00112224567644  899995 999999999999999999998876  4


Q ss_pred             eEEE--EecccccceEeEEcCC----CC-eEEEEecCCcEEEEcCC-CCC------------CCCCCCCcccceeecccc
Q 023246          155 LVRL--MVGDRHVVNQLEPHPH----IP-MFATCGIEKTVKLWAPM-PTD------------FPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       155 ~~~~--~~~h~~~v~~~~~~p~----~~-~l~t~~~d~~i~iwd~~-~~~------------~~~~~~~~~~~~~~~~~~  214 (285)
                      .+..  ...+...|+++++.|-    .. .++.|-..|.|.+|... ..+            ......+...+..+.|..
T Consensus       654 ~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p  733 (764)
T KOG1063|consen  654 YISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRP  733 (764)
T ss_pred             hhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecc
Confidence            4433  2357789999999873    22 46677788999999853 111            112233555666666653


Q ss_pred             C---------CCceEEEeCCCCeEEEEEec
Q 023246          215 R---------EDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       215 ~---------~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .         ....+..++.|-.++++++.
T Consensus       734 ~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  734 TCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccccccccccceeEEeeecccceeEEeecc
Confidence            3         12256788889999998764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=1.4e-15  Score=113.14  Aligned_cols=209  Identities=11%  Similarity=0.145  Sum_probs=151.4

Q ss_pred             ceeEEEEcCCC----CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe
Q 023246            5 RLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~----~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~   79 (285)
                      +++.+-|.|+.    +.+|||.+  ..+|+|.+...+....      ............+..++++..|+.-. +++.++
T Consensus        98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~------~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS  169 (364)
T KOG0290|consen   98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE------LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS  169 (364)
T ss_pred             CccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee------hhhhhccCcccccCCcccccccccCCcceeEee
Confidence            67888999863    35777654  5899999874321000      00000111124567799999998855 566666


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEE
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      + |.+..|||++++.             .......+-.|..+  |..++| ... -+.|++.+.||.|++||++..+--.
T Consensus       170 SiDTTCTiWdie~~~-------------~~~vkTQLIAHDKE--V~DIaf-~~~s~~~FASvgaDGSvRmFDLR~leHST  233 (364)
T KOG0290|consen  170 SIDTTCTIWDIETGV-------------SGTVKTQLIAHDKE--VYDIAF-LKGSRDVFASVGADGSVRMFDLRSLEHST  233 (364)
T ss_pred             cccCeEEEEEEeecc-------------ccceeeEEEecCcc--eeEEEe-ccCccceEEEecCCCcEEEEEecccccce
Confidence            6 9999999998761             00234556678855  999998 553 4678999999999999998765433


Q ss_pred             EE---ecccccceEeEEcCCCC-eEEEEecC-CcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          158 LM---VGDRHVVNQLEPHPHIP-MFATCGIE-KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       158 ~~---~~h~~~v~~~~~~p~~~-~l~t~~~d-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      .+   .....+...++|++... ++||-..| ..|.|.|++..+  +.++.+|...+..+.|.......+++++.|.+..
T Consensus       234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal  313 (364)
T KOG0290|consen  234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL  313 (364)
T ss_pred             EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence            33   23245788899998655 47776655 479999998775  5789999999999999888888999999999999


Q ss_pred             EEEeccc
Q 023246          231 VLRLQRR  237 (285)
Q Consensus       231 vwd~~~~  237 (285)
                      +||+..-
T Consensus       314 iWDl~q~  320 (364)
T KOG0290|consen  314 IWDLQQM  320 (364)
T ss_pred             EEecccc
Confidence            9999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.7e-15  Score=113.22  Aligned_cols=161  Identities=14%  Similarity=0.147  Sum_probs=113.6

Q ss_pred             cceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCC-cceEEEEEecCCCEEEEec-
Q 023246            4 IRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         4 ~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ..++.++|... .+..+.+++.||+|++||+++.....             ......|. .+..+++..-.++.+++|. 
T Consensus        71 ~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-------------~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   71 ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-------------RISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-------------heeccCCCCCcceEeeccCcCCeEEeccc
Confidence            34667777553 67899999999999999999775321             11113333 4566666666777888863 


Q ss_pred             ----CCcEEEEEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-
Q 023246           81 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-  154 (285)
Q Consensus        81 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-  154 (285)
                          +..|.+||++...               +.+. -...|.+.  |++++|++.+.+.|++|+-||-|.+||+.... 
T Consensus       138 ~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             cccCceEEEEEEecccc---------------chhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence                6789999998762               2233 34567777  99999966678899999999999999987432 


Q ss_pred             --eEEEEecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCC
Q 023246          155 --LVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       155 --~~~~~~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~  194 (285)
                        .+...-.|...|..+.|...+ +.+.+-+...+..+|+++.
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence              122222366778888887765 2366677778888887653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2.6e-15  Score=120.92  Aligned_cols=188  Identities=20%  Similarity=0.274  Sum_probs=134.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ++++|.|+++.+. ...+++|+.||+|+.|++.... - .....   ........+.||++.|+.+++|+....|+++ .
T Consensus       343 H~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~-d-p~ds~---dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~  416 (577)
T KOG0642|consen  343 HEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQ-D-PDDSY---DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS  416 (577)
T ss_pred             ccCceEEEEecCC-ceEEEeeccCceeeeeccCCCC-C-ccccc---CcchhccceeccccceeeeeecccccceeeecC
Confidence            4689999999996 5999999999999999887322 0 00000   0113445557999999999999988888886 5


Q ss_pred             CCcEEEEEcCCCCC-----CC----CCCCCC----------------ccccCCCC---ceEeec-----ccCceeeeeEE
Q 023246           81 DELVYLFEKNMGLG-----PS----PLSLSP----------------EDLQKREE---PQVYSG-----HRNSQTVKGVN  127 (285)
Q Consensus        81 d~~i~iwd~~~~~~-----~~----~~~~~~----------------~~~~~~~~---~~~~~~-----~~~~~~i~~~~  127 (285)
                      ||++++|.......     +.    +.++..                ..+..+..   ...+..     ......+..+.
T Consensus       417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            99999999875531     00    000000                00111111   111111     10001255555


Q ss_pred             EecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          128 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       128 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                       +.|...+.+++..|+.|+++|..++++++....|...++++++.|+|.+|++++.|+.+++|.+....
T Consensus       497 -s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  497 -SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             -ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence             47888999999999999999999999999999999999999999999999999999999999986543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2e-14  Score=108.27  Aligned_cols=160  Identities=13%  Similarity=0.092  Sum_probs=117.8

Q ss_pred             eEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246           64 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  142 (285)
Q Consensus        64 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  142 (285)
                      ..|+.|++.|.+||.| .+|.|.|||+.+.                ...+.+.+|..+  |.+++| +++|++|++++.|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~----------------~iar~lsaH~~p--i~sl~W-S~dgr~LltsS~D   86 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF----------------RIARMLSAHVRP--ITSLCW-SRDGRKLLTSSRD   86 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc----------------chhhhhhccccc--eeEEEe-cCCCCEeeeecCC
Confidence            7799999999999996 5999999999887                677888999976  999995 9999999999999


Q ss_pred             CeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCccc----ceeeccccCCC
Q 023246          143 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEK----IMKANKQGRED  217 (285)
Q Consensus       143 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~  217 (285)
                      ..|.+||+..|.+++.+.- .++|..+.|+|.... ++.+-.+..-.+-++...+-.-++.....    .-........+
T Consensus        87 ~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g  165 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG  165 (405)
T ss_pred             ceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence            9999999999999988874 679999999996554 33333444444444443321112111111    10101122346


Q ss_pred             ceEEEeCCCCeEEEEEecccccceeE
Q 023246          218 HSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .++++|...|.+.++|..+.+.+..+
T Consensus       166 ~yIitGtsKGkllv~~a~t~e~vas~  191 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETLECVASF  191 (405)
T ss_pred             CEEEEecCcceEEEEecchheeeeee
Confidence            69999999999999998876554433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.66  E-value=7.1e-14  Score=116.51  Aligned_cols=200  Identities=20%  Similarity=0.339  Sum_probs=148.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeC-CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-   78 (285)
                      +...|.+++|+|++ ..+++++. |+.+++|++..+.              .. ....+|...|.+++|+|++. ++++ 
T Consensus       154 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         154 HSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK--------------PL-STLAGHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             CcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc--------------eE-EeeccCCCceEEEEEcCCcceEEEEe
Confidence            34678899999986 68888875 9999999998743              12 22255899999999999998 6666 


Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-E
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-V  156 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~  156 (285)
                      +.|+.|++||...+                .... .+..|.... +.  .| ++++.++++++.|+.+++|++..... +
T Consensus       218 ~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~  277 (466)
T COG2319         218 SSDGTIRLWDLSTG----------------KLLRSTLSGHSDSV-VS--SF-SPDGSLLASGSSDGTIRLWDLRSSSSLL  277 (466)
T ss_pred             cCCCcEEEEECCCC----------------cEEeeecCCCCcce-eE--eE-CCCCCEEEEecCCCcEEEeeecCCCcEE
Confidence            45999999988754                4445 577777542 22  55 88888899999999999999987665 5


Q ss_pred             EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC--CCCcccceeeccccCC-CceEEEeCCCCeEEEE
Q 023246          157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL--PDNAEKIMKANKQGRE-DHSRITLTPDVIMHVL  232 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~d~~i~vw  232 (285)
                      ..+..|...+.++.|+|++..+++++.|+.+++|+...... ...  ..|...+..+.+ ... ......+..|+.+.+|
T Consensus       278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~  356 (466)
T COG2319         278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLW  356 (466)
T ss_pred             EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEee
Confidence            55567889999999999888888888899999998876653 222  244444555544 322 2344444678999999


Q ss_pred             Eecccc
Q 023246          233 RLQRRQ  238 (285)
Q Consensus       233 d~~~~~  238 (285)
                      ++....
T Consensus       357 ~~~~~~  362 (466)
T COG2319         357 DLRTGK  362 (466)
T ss_pred             ecCCCc
Confidence            988776

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=4.2e-15  Score=112.04  Aligned_cols=206  Identities=11%  Similarity=0.166  Sum_probs=149.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|+|.+|++|. ..+|++.....|.||.....+..            ...+.+..|...|+.|.|+|....|+++ .|
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d   76 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD   76 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence            4689999999986 89999999999999998866521            4445558899999999999999888886 49


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE----E
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV----R  157 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----~  157 (285)
                      ..-++|....+             .+++..-.+..+...  .+++.| +|.++.|++|+....|.||-++..+--    +
T Consensus        77 rnayVw~~~~~-------------~~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh  140 (361)
T KOG1523|consen   77 RNAYVWTQPSG-------------GTWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH  140 (361)
T ss_pred             CCccccccCCC-------------CeeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence            99999998544             234455555556644  899995 999999999999999999987744321    1


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcC-----CCCCC--------------CCCCCCcccceeeccccCCCc
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP-----MPTDF--------------PPLPDNAEKIMKANKQGREDH  218 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~-----~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  218 (285)
                      .-+.+++.|.+++|+|++-+|+.|+.|+..|++..     +...-              .++....+.+....+ ++.+.
T Consensus       141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f-s~sG~  219 (361)
T KOG1523|consen  141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF-SPSGN  219 (361)
T ss_pred             hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe-CCCCC
Confidence            22356788999999999999999999999999974     11110              011112223333322 23334


Q ss_pred             eEEEeCCCCeEEEEEecccc
Q 023246          219 SRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .+.-.+.|+.+.+-|.....
T Consensus       220 ~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EeeEecCCCceEEeecCCCc
Confidence            55556677788777766553

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=8.8e-14  Score=106.90  Aligned_cols=193  Identities=10%  Similarity=0.172  Sum_probs=137.6

Q ss_pred             eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      |--+-|+.   .++|..+.+.  .+++++++.+..+            |...+    ..+|.++.++.+  .|+..-...
T Consensus        49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr~--RLvV~Lee~  107 (391)
T KOG2110|consen   49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNRK--RLVVCLEES  107 (391)
T ss_pred             EEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEccc--eEEEEEccc
Confidence            33445555   3555555443  4888888766532            22222    446788888654  666665555


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEEe--cCCCeEEEEecCCCceEEEEe
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~--~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |+|||++..                +.++++... .++..+.++++ ++.+.+++--  ...|.|.+||+.+-+.+..+.
T Consensus       108 IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~  170 (391)
T KOG2110|consen  108 IYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN  170 (391)
T ss_pred             EEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEEE
Confidence            999999877                677777654 33334677765 6666688763  347899999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCc-EEEEcCCCCC-CCCCCCC--cccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDN--AEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +|.+.+.+++|+|+|.+|||++..|+ ||++.+..+. +.++...  ...++.+. ..++..++.+.+..++|++|.+..
T Consensus       171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS-FSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE-ECCCCCeEEEecCCCeEEEEEecc
Confidence            99999999999999999999999986 6999986654 5555432  23344443 355667888888899999999875


Q ss_pred             c
Q 023246          237 R  237 (285)
Q Consensus       237 ~  237 (285)
                      .
T Consensus       250 ~  250 (391)
T KOG2110|consen  250 V  250 (391)
T ss_pred             c
Confidence            4

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=1.1e-14  Score=107.16  Aligned_cols=215  Identities=14%  Similarity=0.157  Sum_probs=140.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      .+.|+++.|..+  .+|.+|..-|.|++|++.+.+              ....+...|...|+.+.--|++.+..-+.|.
T Consensus        14 ~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r--------------~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~   77 (323)
T KOG0322|consen   14 SSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTER--------------DLPLIRLFGRLFITNLQSIPNDSLDTQGRDP   77 (323)
T ss_pred             cchheehhhccc--hhhhcccccceEEEEEeecCc--------------cchhhhhhccceeeceeecCCcchhhcCCCc
Confidence            356788888884  579999999999999999876              3333323677889999999986666668899


Q ss_pred             cEEEEEcCCCCCCCCCCC----------C-------C----------------ccccCCCCceEeecccCc--eeeeeEE
Q 023246           83 LVYLFEKNMGLGPSPLSL----------S-------P----------------EDLQKREEPQVYSGHRNS--QTVKGVN  127 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~----------~-------~----------------~~~~~~~~~~~~~~~~~~--~~i~~~~  127 (285)
                      .+.+|++....-....++          +       .                .+......+.........  ..+.+..
T Consensus        78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~  157 (323)
T KOG0322|consen   78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD  157 (323)
T ss_pred             eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence            999999986330000000          0       0                000000000110000000  0144443


Q ss_pred             EecCCC--cEEEEecCCCeEEEEecCCCceEEEE----------ecc---------------------------------
Q 023246          128 FFGPND--EYVMSGSDCGHLFIWKKKGGKLVRLM----------VGD---------------------------------  162 (285)
Q Consensus       128 ~~~~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~----------~~h---------------------------------  162 (285)
                      +-...+  -++++|.++|.+.+||+.++..+-.+          ..|                                 
T Consensus       158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s  237 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS  237 (323)
T ss_pred             ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence            211122  25677899999999999876221100          011                                 


Q ss_pred             -------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCe
Q 023246          163 -------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       163 -------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                                   +..|..+.+.||++.+||++.|+.||+|.-++.. +..+..|...+..+.. .++..++++++.|..
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf-spd~~lmAaaskD~r  316 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF-SPDCELMAAASKDAR  316 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe-CCCCchhhhccCCce
Confidence                         2356778888999999999999999999998876 4556668877766654 555678999999999


Q ss_pred             EEEEEe
Q 023246          229 MHVLRL  234 (285)
Q Consensus       229 i~vwd~  234 (285)
                      |.+|++
T Consensus       317 ISLWkL  322 (323)
T KOG0322|consen  317 ISLWKL  322 (323)
T ss_pred             EEeeec
Confidence            999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=5.9e-16  Score=121.96  Aligned_cols=209  Identities=15%  Similarity=0.181  Sum_probs=168.5

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY   85 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~   85 (285)
                      -..+.|+.+| ..++.|+..|.|-.+|..++++...+.                -...|.++.|-.+.+++|.+....++
T Consensus       132 PY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------v~Etv~Dv~~LHneq~~AVAQK~y~y  194 (545)
T KOG1272|consen  132 PYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN----------------VMETVRDVTFLHNEQFFAVAQKKYVY  194 (545)
T ss_pred             CeeeeecCCc-cEEEecCCccceeeeecccceeeeeee----------------hhhhhhhhhhhcchHHHHhhhhceEE
Confidence            3457888865 899999999999999999987542221                13467889999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccccc
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV  165 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  165 (285)
                      |||-...                 .++-++.+..   +..+.| -|..-+|++++..|.+..-|+.+|+.+..+..-.+.
T Consensus       195 vYD~~Gt-----------------ElHClk~~~~---v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~  253 (545)
T KOG1272|consen  195 VYDNNGT-----------------ELHCLKRHIR---VARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR  253 (545)
T ss_pred             EecCCCc-----------------EEeehhhcCc---hhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCCc
Confidence            9997643                 5555555433   888998 788889999999999999999999999999877889


Q ss_pred             ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +..++-+|-+..+-+|...|+|.+|.+.... +..+..|..++..+.. ...++++++.+.|..++|||++...++....
T Consensus       254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv-~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV-DRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE-CCCCcEEeecccccceeEeeeccccccceee
Confidence            9999999998899999999999999998776 4566667777755543 5677899999999999999999988776664


Q ss_pred             eeccccccC
Q 023246          245 RRYNAADFE  253 (285)
Q Consensus       245 ~~~~~~~~~  253 (285)
                      .......+.
T Consensus       333 tp~~a~~ls  341 (545)
T KOG1272|consen  333 TPHPASNLS  341 (545)
T ss_pred             cCCCccccc
Confidence            433333333

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=3.8e-15  Score=115.52  Aligned_cols=172  Identities=18%  Similarity=0.266  Sum_probs=130.6

Q ss_pred             CcceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           61 NIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        61 ~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      ..+|..+.|.++.. .|+++ .|..|++|-+........       ..+.+....+..|...  |+.+.| +|+|..+++
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLAS   82 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLAS   82 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeeee
Confidence            45789999999876 88885 699999999987631100       0122345667788866  999997 999999999


Q ss_pred             ecCCCeEEEEecC--------C--------CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCC
Q 023246          139 GSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP  201 (285)
Q Consensus       139 ~~~dg~v~vwd~~--------~--------~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~  201 (285)
                      |+++|.|.+|-..        +        ......+.+|...|..++|+|++.++++++.|..+++||+..+.+. .+.
T Consensus        83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~  162 (434)
T KOG1009|consen   83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD  162 (434)
T ss_pred             cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence            9999999999765        2        1123456689999999999999999999999999999999988864 444


Q ss_pred             CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          202 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .|...+.-.+| .+.+.++++-+.|...+.+.+...+.+...
T Consensus       163 dh~~yvqgvaw-Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~  203 (434)
T KOG1009|consen  163 DHEHYVQGVAW-DPLNQYVASKSSDRHPEGFSAKLKQVIKRH  203 (434)
T ss_pred             ccccccceeec-chhhhhhhhhccCcccceeeeeeeeeeeee
Confidence            55555544443 555668888888887788877766555444

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.65  E-value=1.2e-14  Score=116.84  Aligned_cols=206  Identities=9%  Similarity=0.105  Sum_probs=149.9

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP   95 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~   95 (285)
                      ..|+.++.||.+.|.+-. ++               +......|.+.+.+-.|+|+|.-|++ |.||.|++|.-...   
T Consensus        76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---  136 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---  136 (737)
T ss_pred             ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---
Confidence            578889999999888754 32               22223789999999999999986666 78999999997543   


Q ss_pred             CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCC
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  175 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  175 (285)
                                    ...++....  ..|+|++| .|+.+.++-+.. +.+.+=-+.....+-.+++|.+-|.++.|+|..
T Consensus       137 --------------LRStl~Q~~--~~v~c~~W-~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s  198 (737)
T KOG1524|consen  137 --------------LRSTVVQNE--ESIRCARW-APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS  198 (737)
T ss_pred             --------------HHHHHhhcC--ceeEEEEE-CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence                          333343334  34999996 888776655443 455555566556666789999999999999999


Q ss_pred             CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc--ceeEeeeccccccC
Q 023246          176 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT--LAYRERRYNAADFE  253 (285)
Q Consensus       176 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~  253 (285)
                      ..+++|++|-..++||..+..+..-..|.-++.++.|...  ..++.+| -.+++   +.+.+.  +.-+.+++++..++
T Consensus       199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd--~~~~v~S-~nt~R---~~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE--KDYLLWS-YNTAR---FSSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             cceeecCCceeEEeecccCcccccCChhccceeeeeeccc--cceeeee-eeeee---ecCCCccceEEEEEcCCCceee
Confidence            9999999999999999988887777667777777766433  3333333 23333   333332  33458899999999


Q ss_pred             CCCCcCeEEEee
Q 023246          254 SDEEEGETYLLG  265 (285)
Q Consensus       254 ~~~~~~~v~~~~  265 (285)
                      ++...|.+++.-
T Consensus       273 ~gt~~G~v~~A~  284 (737)
T KOG1524|consen  273 CGTSTGQLIVAY  284 (737)
T ss_pred             ccccCceEEEee
Confidence            998888776654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.64  E-value=5e-14  Score=116.19  Aligned_cols=240  Identities=13%  Similarity=0.113  Sum_probs=153.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ..|..++|-|||..+++++  +..+.+||...|..              ...+ ++|.+.|.+++|+.+|+.+++| .|+
T Consensus        13 hci~d~afkPDGsqL~lAA--g~rlliyD~ndG~l--------------lqtL-KgHKDtVycVAys~dGkrFASG~aDK   75 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAA--GSRLLVYDTSDGTL--------------LQPL-KGHKDTVYCVAYAKDGKRFASGSADK   75 (1081)
T ss_pred             cchheeEECCCCceEEEec--CCEEEEEeCCCccc--------------cccc-ccccceEEEEEEccCCceeccCCCce
Confidence            3688999999986665554  45799999998863              2333 8999999999999999999996 599


Q ss_pred             cEEEEEcCCCC---------------CCCCCCCC---CccccCCC-CceEeecccCceeeeeEEEecCCCcEEEEecCCC
Q 023246           83 LVYLFEKNMGL---------------GPSPLSLS---PEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  143 (285)
Q Consensus        83 ~i~iwd~~~~~---------------~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  143 (285)
                      .|.+|+.+-..               .|....+.   ..+..-|. ..+....++....+.+++| ..+|++++.|-.+|
T Consensus        76 ~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsW-tnDGqylalG~~nG  154 (1081)
T KOG1538|consen   76 SVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSW-TNDGQYLALGMFNG  154 (1081)
T ss_pred             eEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeee-cCCCcEEEEeccCc
Confidence            99999875331               00000000   00000000 0011122444445788885 99999999999999


Q ss_pred             eEEEEecCCCceEEEEe---cccccceEeEEcCCC-----CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccC
Q 023246          144 HLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR  215 (285)
Q Consensus       144 ~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  215 (285)
                      +|.+-+.. ++..-.+.   +.+++|.+++|+|..     ..++......++.++.+.+..+-.-....-...++.. ..
T Consensus       155 TIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY-f~  232 (1081)
T KOG1538|consen  155 TISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY-FT  232 (1081)
T ss_pred             eEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee-cc
Confidence            99998754 44333333   467899999999963     3577888888999999877654322111222223332 44


Q ss_pred             CCceEEEeCCCCeEEEEEeccccc------ce---eEeeeccccccCCCCCcCeEEE
Q 023246          216 EDHSRITLTPDVIMHVLRLQRRQT------LA---YRERRYNAADFESDEEEGETYL  263 (285)
Q Consensus       216 ~~~~~~~~s~d~~i~vwd~~~~~~------~~---~~~~~~~~~~~~~~~~~~~v~~  263 (285)
                      ++.+++.|+.|+.+++|-...-..      -.   .....|+.+..+.+..+|.+..
T Consensus       233 NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  233 NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC  289 (1081)
T ss_pred             CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence            667899999999999996432111      11   1134555555555555555543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=3.9e-15  Score=119.86  Aligned_cols=167  Identities=17%  Similarity=0.223  Sum_probs=123.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEEe-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISY-   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~-   79 (285)
                      .+-|+|+.|+.+| .+|++|+.|-.+.|||....+              ....+-.+|...|.++.|-|..  +++++| 
T Consensus        50 ~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   50 TGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             cceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            4679999999986 999999999999999998766              3444447999999999999965  477776 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceE--
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLV--  156 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~--  156 (285)
                      .|..|++||+....+..      .+-........+..|...  |..++- .|++ ..+.++++||+++-+|++.....  
T Consensus       115 gDk~i~lfdl~~~~~~~------~d~~~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGG------MDHGMEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CcceEEEEecccccccc------cccCccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCccCCc
Confidence            59999999998531000      000011344556778866  888885 7777 78899999999999999863211  


Q ss_pred             --------EEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCC
Q 023246          157 --------RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM  193 (285)
Q Consensus       157 --------~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~  193 (285)
                              ..+....-...++.++|...+ |+.|+.|-..++||.+
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence                    111112234678899997765 9999999999999953

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=4.4e-14  Score=114.38  Aligned_cols=239  Identities=15%  Similarity=0.175  Sum_probs=165.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccc--------------ccc-----CCCC-----C
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP--------------RHL-----IGKN-----N   61 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--------------~~~-----~~~h-----~   61 (285)
                      -+.|..+|||..++|+|.+.-.|++||+....+-.....+..+..|.+              ..+     ...|     .
T Consensus        54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP  133 (703)
T KOG2321|consen   54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP  133 (703)
T ss_pred             cceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC
Confidence            467899999988999999999999999975433211111111111110              000     0001     1


Q ss_pred             cceEEEEEec-CCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246           62 IHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        62 ~~v~~i~~s~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                      ..-..++++. ...+++.|+...|+-+++..+                ..+..|......  ++++.. ++...+|++|+
T Consensus       134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----------------rfL~P~~~~~~~--lN~v~i-n~~hgLla~Gt  194 (703)
T KOG2321|consen  134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----------------RFLNPFETDSGE--LNVVSI-NEEHGLLACGT  194 (703)
T ss_pred             cCCccccccCCCccEEEeecCcceEEEEcccc----------------cccccccccccc--ceeeee-cCccceEEecc
Confidence            1223444443 334677777888888899887                566667666555  889987 88889999999


Q ss_pred             CCCeEEEEecCCCceEEEEec------ccc-----cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCC--cccc
Q 023246          141 DCGHLFIWKKKGGKLVRLMVG------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--AEKI  207 (285)
Q Consensus       141 ~dg~v~vwd~~~~~~~~~~~~------h~~-----~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~  207 (285)
                      .+|.|-.||.++...+.++..      |.+     .|+++.|+.+|-.++.|..+|.+.|||++..+......|  .-++
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            999999999998877666542      333     499999999998899999999999999998876544444  4456


Q ss_pred             eeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEE
Q 023246          208 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYL  263 (285)
Q Consensus       208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  263 (285)
                      ..+.|...+....+.......++|||-..++....++...+..++-.-++.|-+|+
T Consensus       275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             eeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEE
Confidence            67766555444455556678899999999998888877776665555455544443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1.1e-14  Score=116.95  Aligned_cols=179  Identities=11%  Similarity=0.151  Sum_probs=133.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      .+.|.+-.|+|+| .-|++++.||.|++|.-. |-               .+..+.....+|+|++|.|+...++-+..+
T Consensus       104 ~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GM---------------LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~  166 (737)
T KOG1524|consen  104 AAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GM---------------LRSTVVQNEESIRCARWAPNSNSIVFCQGG  166 (737)
T ss_pred             hhhhhhcccCCCC-ceeeeecCCceEEEEecc-ch---------------HHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence            4567788999986 889999999999999854 31               111223446689999999999888878778


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      .+.|=.+...                ..+-..+.|.+-  |.++.| ++..+.+++|++|-..++||.. |+.+..-..|
T Consensus       167 h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~  226 (737)
T KOG1524|consen  167 HISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE  226 (737)
T ss_pred             eEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccCChh
Confidence            8888777655                456677889876  999995 9999999999999999999987 8888888889


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                      ..+|++++|.|+ +.++.++. .++|+=.++.+          .++.+.| +.++..+..|+..|.+.+
T Consensus       227 ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~G----------SifnlsW-S~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  227 EYAITSVAFNPE-KDYLLWSY-NTARFSSPRVG----------SIFNLSW-SADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccceeeeeeccc-cceeeeee-eeeeecCCCcc----------ceEEEEE-cCCCceeeccccCceEEE
Confidence            999999999999 56666664 46664333333          3444444 444444555555555444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=2.6e-13  Score=113.08  Aligned_cols=201  Identities=19%  Similarity=0.362  Sum_probs=153.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCC-CCcceEEEEE-ecCCC-EEEE-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAY-SNTSE-LLIS-   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~i~~-s~~~~-~l~s-   78 (285)
                      ...|.++.+.+.+ ..++.++.|+.+.+|+...+..             ....+ .. +...+..+.+ ++++. +++. 
T Consensus        65 ~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  129 (466)
T COG2319          65 EDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK-------------LIKSL-EGLHDSSVSKLALSSPDGNSILLAS  129 (466)
T ss_pred             cceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce-------------eEEEE-eccCCCceeeEEEECCCcceEEecc
Confidence            4578889999975 7888888999999999987640             11111 22 2236667777 77777 5554 


Q ss_pred             ec-CCcEEEEEcCC-CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCCCce
Q 023246           79 YN-DELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKL  155 (285)
Q Consensus        79 ~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~  155 (285)
                      +. |+.+.+|+... .                .....+..|...  +..++| +++++++++++. ++.+++|++..+..
T Consensus       130 ~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (466)
T COG2319         130 SSLDGTVKLWDLSTPG----------------KLIRTLEGHSES--VTSLAF-SPDGKLLASGSSLDGTIKLWDLRTGKP  190 (466)
T ss_pred             CCCCccEEEEEecCCC----------------eEEEEEecCccc--EEEEEE-CCCCCEEEecCCCCCceEEEEcCCCce
Confidence            44 89999999986 3                466778888866  889997 999998888885 99999999998889


Q ss_pred             EEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC-C-CCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          156 VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-P-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      +..+..|...|.+++|+|++. .+++++.|+.|++||...+.. . .+..|.... .. ........+++++.|+.+++|
T Consensus       191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~~~~~  268 (466)
T COG2319         191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-SFSPDGSLLASGSSDGTIRLW  268 (466)
T ss_pred             EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-eECCCCCEEEEecCCCcEEEe
Confidence            999999999999999999998 566668999999998875543 3 355555543 11 233344577799999999999


Q ss_pred             Eeccccc
Q 023246          233 RLQRRQT  239 (285)
Q Consensus       233 d~~~~~~  239 (285)
                      ++.....
T Consensus       269 ~~~~~~~  275 (466)
T COG2319         269 DLRSSSS  275 (466)
T ss_pred             eecCCCc
Confidence            9986654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=4.2e-13  Score=103.09  Aligned_cols=210  Identities=15%  Similarity=0.192  Sum_probs=140.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~d~   82 (285)
                      ..+..++|++. -.-+|++..|.+|++|+-.. +              ++..+.......|++++|-|.+. .|+.+.-+
T Consensus        99 ~dlr~~aWhqH-~~~fava~nddvVriy~kss-t--------------~pt~Lks~sQrnvtclawRPlsaselavgCr~  162 (445)
T KOG2139|consen   99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-T--------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA  162 (445)
T ss_pred             cceeeEeechh-hhhhhhhccCcEEEEeccCC-C--------------CCceecchhhcceeEEEeccCCcceeeeeecc
Confidence            35677999994 47899999999999999876 2              33333344566899999999764 67777777


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~  161 (285)
                      -|++|........    -...........+.++... ...|+++.| .++|..+++++. |..|.+||..++..+.....
T Consensus       163 gIciW~~s~tln~----~r~~~~~s~~~~qvl~~pg-h~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~  236 (445)
T KOG2139|consen  163 GICIWSDSRTLNA----NRNIRMMSTHHLQVLQDPG-HNPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK  236 (445)
T ss_pred             eeEEEEcCccccc----ccccccccccchhheeCCC-CceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence            8999988644100    0000011112233333222 245999996 999999998775 77899999999887765544


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ..+.+.-+.|+||+.+|+.+.-|+..++|...... .....-..+.+....|..-...++++.+....++-..+.
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            45789999999999999999999999999654432 222221223444444433344566666666655555443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=5.5e-14  Score=108.70  Aligned_cols=169  Identities=17%  Similarity=0.340  Sum_probs=130.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC--CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEec
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYN   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~   80 (285)
                      ++..+.-+|..+.++|+|+..  ..++|||+...+.+  +.........    +--.-.-.++++.|-+.  ...|+++.
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~----L~LrVPvW~tdi~Fl~g~~~~~fat~T  223 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDR----LGLRVPVWITDIRFLEGSPNYKFATIT  223 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCcc----ccceeeeeeccceecCCCCCceEEEEe
Confidence            445566677777899999999  89999999877432  2111110000    00011235678999887  66788865


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-  158 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-  158 (285)
                       -+++++||.+.+.               +++..|.-..++  +.++.- .|.++++++|..-|.+..||++.++.+.. 
T Consensus       224 ~~hqvR~YDt~~qR---------------RPV~~fd~~E~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  224 RYHQVRLYDTRHQR---------------RPVAQFDFLENP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             cceeEEEecCcccC---------------cceeEeccccCc--ceeeee-cCCCcEEEEecccchhheecccCceeeccc
Confidence             8999999998764               566666666655  899985 89999999999999999999999988766 


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      +.+-.+.|.++..+|.++++++||.|..+||+|+.+.++
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            788889999999999999999999999999999988553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.3e-13  Score=115.36  Aligned_cols=189  Identities=13%  Similarity=0.084  Sum_probs=120.1

Q ss_pred             cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      ..+.+.+|+|++ ..|+..+.+   ..|++||+.+++..            ..... .+|   ...++|+|+|+.|+.+ 
T Consensus       204 ~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~------------~l~~~-~g~---~~~~~wSPDG~~La~~~  266 (429)
T PRK01742        204 QPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK------------VVASF-RGH---NGAPAFSPDGSRLAFAS  266 (429)
T ss_pred             CccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE------------EEecC-CCc---cCceeECCCCCEEEEEE
Confidence            468899999986 677766543   36999999877521            11111 233   3368999999977763 


Q ss_pred             -cCCcEEEE--EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCC-c
Q 023246           80 -NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGG-K  154 (285)
Q Consensus        80 -~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~-~  154 (285)
                       .++.+.||  |+.++                 ....+..+...  +....| +|+++.++..+ .+|...+|++... .
T Consensus       267 ~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        267 SKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NTEPSW-SPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             ecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cCCEEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence             37765555  55443                 33445544443  677886 99999776554 5777788876432 2


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ....+ .+..  ....|+|++++++..+.++ +.+||+.++....+.... ...... +.+++++++.++.++...+|.+
T Consensus       327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-~~~~~~-~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        327 GASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-LDESPS-ISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-CCCCce-ECCCCCEEEEEEcCCCceEEEE
Confidence            22223 3433  4678999999988887765 556998877643322111 111122 3556778888888888888876


Q ss_pred             c
Q 023246          235 Q  235 (285)
Q Consensus       235 ~  235 (285)
                      .
T Consensus       401 ~  401 (429)
T PRK01742        401 V  401 (429)
T ss_pred             E
Confidence            4

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=3.1e-14  Score=114.36  Aligned_cols=179  Identities=15%  Similarity=0.166  Sum_probs=123.0

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEecCCcEEEEEcCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLG   94 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~d~~i~iwd~~~~~~   94 (285)
                      --+..|-..|.|.+.|....+..+.+..+.           .-....|+++.|-|.+.  +|++-.+|.+++||.....+
T Consensus       186 ~dllIGf~tGqvq~idp~~~~~sklfne~r-----------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~  254 (636)
T KOG2394|consen  186 LDLLIGFTTGQVQLIDPINFEVSKLFNEER-----------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG  254 (636)
T ss_pred             cceEEeeccCceEEecchhhHHHHhhhhcc-----------cccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence            567778888999998877533221111111           11236899999999664  44445699999998854432


Q ss_pred             CCCCCCCCcc------------ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           95 PSPLSLSPED------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        95 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      ........-.            .....++..+.-...  .|..++| +|+|++|++.++||.++|||..+-+++..++..
T Consensus       255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY  331 (636)
T KOG2394|consen  255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY  331 (636)
T ss_pred             CCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeeccHHHHHHHHHhh
Confidence            2211111110            001112222222222  3888998 999999999999999999999988888888877


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCccccee
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK  209 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~  209 (285)
                      -+...|++|+|||+++++|++|..|.+|.+..+++ ..-.+|..++..
T Consensus       332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            78999999999999999999999999999977764 444556655543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.9e-14  Score=109.83  Aligned_cols=176  Identities=14%  Similarity=0.180  Sum_probs=130.4

Q ss_pred             cccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE
Q 023246           50 TFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  128 (285)
Q Consensus        50 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  128 (285)
                      .+|.+.+ .+|.+.|.++.|+.++++|++| .|..+++|++...-          -.+..+++... +|.....|.+++|
T Consensus        46 ~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~----------~~k~~KPI~~~-~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   46 PFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM----------VRKTPKPIGVM-EHPHRSNIFSLEF  113 (609)
T ss_pred             chhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHH----------hhcCCCCceec-cCccccceEEEEE
Confidence            3455555 6899999999999999999996 58999999986430          00111333333 3333344999998


Q ss_pred             ecCCCcEEEEecCCCeEEEEecCCCceEEEEec--ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCC--CC-C
Q 023246          129 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPP--LP-D  202 (285)
Q Consensus       129 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~--~~-~  202 (285)
                       +...+++++|..+++|.+-|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.+|.|.+||.+... ...  +. .
T Consensus       114 -~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  114 -DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             -ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence             88899999999999999999999998887752  33689999999999999999999999999997654 111  11 2


Q ss_pred             CcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ................++++.+..+-+-+||++..+
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence            223333343333456688888999999999988654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-13  Score=120.54  Aligned_cols=229  Identities=12%  Similarity=0.135  Sum_probs=144.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      +..|..++.++....+|++|+.||+|++|+.+.-...        ...+.....+..-..++.++...+.++.+|.+ .|
T Consensus      1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             cccccceeecCCCCceEEEecCCceEEEeeehhhhcC--------cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            4566788888866689999999999999998754311        00001111112235678899999999888875 59


Q ss_pred             CcEEEEEcCCCCC--CCCC-----------------------------------CCCCccccCCCCceEeecccCceeee
Q 023246           82 ELVYLFEKNMGLG--PSPL-----------------------------------SLSPEDLQKREEPQVYSGHRNSQTVK  124 (285)
Q Consensus        82 ~~i~iwd~~~~~~--~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~  124 (285)
                      |.|++.++.....  ....                                   .+..++.+....+.+++.......|+
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            9999999976320  0000                                   00011111111122222211112389


Q ss_pred             eEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe-cccccceEeEEcCCCC---eEEEEe--cCCcEEEEcCCCCCCC
Q 023246          125 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---MFATCG--IEKTVKLWAPMPTDFP  198 (285)
Q Consensus       125 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~---~l~t~~--~d~~i~iwd~~~~~~~  198 (285)
                      +++. +|.++.+++|+..|.+.+||++-+.++..+. .+..++..+..+|..+   ..++++  ..+.|.+|++.++..+
T Consensus      1200 Si~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1200 SIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             EEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence            9997 9999999999999999999999888887765 4557888888887554   444443  4678999998766321


Q ss_pred             C-CCCC-cccc---------------eeec--cccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          199 P-LPDN-AEKI---------------MKAN--KQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       199 ~-~~~~-~~~~---------------~~~~--~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      + +... ..+.               ....  .....+..+++++.|..|+.||......-
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            1 1100 0000               0000  01113458899999999999998876544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.58  E-value=4.6e-12  Score=102.79  Aligned_cols=201  Identities=11%  Similarity=0.118  Sum_probs=122.1

Q ss_pred             ceeEEEEcCCCCcEEEEe-eCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--
Q 023246            5 RLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg-~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--   80 (285)
                      ....++++|++ ++|+++ ..++.|.+|++.. +++.            .....  ...+....++|+|++++|+++.  
T Consensus        36 ~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~------------~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         36 QVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT------------FAAES--PLPGSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE------------Eeeee--cCCCCceEEEECCCCCEEEEEEcC
Confidence            45678999986 565554 5689999999973 3210            00000  1123456899999999777753  


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCceEE--
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLVR--  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~~~--  157 (285)
                      ++.|.+|++......            .+.+..+.+..   ....+++ +|+++++++ ...++.|.+||+.+...+.  
T Consensus       101 ~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028        101 ANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSANI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             CCeEEEEEECCCCCC------------CCceeeccCCC---cccEeEe-CCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            899999999643100            01112222221   2566776 999988854 5567999999997633221  


Q ss_pred             -----EEecccccceEeEEcCCCCeEEEEec-CCcEEEEcCCC--CCC---CCCC---CC---cccceeeccccCCCceE
Q 023246          158 -----LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDF---PPLP---DN---AEKIMKANKQGREDHSR  220 (285)
Q Consensus       158 -----~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~---~~~~---~~---~~~~~~~~~~~~~~~~~  220 (285)
                           ... .......++|+|++++++++.. +++|.+|+++.  +.+   ..+.   ..   ......+ ...++++++
T Consensus       165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i-~~~pdg~~l  242 (330)
T PRK11028        165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI-HITPDGRHL  242 (330)
T ss_pred             CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE-EECCCCCEE
Confidence                 111 1345678999999999877765 89999999863  221   1111   10   0011111 123455556


Q ss_pred             EEe-CCCCeEEEEEecccc
Q 023246          221 ITL-TPDVIMHVLRLQRRQ  238 (285)
Q Consensus       221 ~~~-s~d~~i~vwd~~~~~  238 (285)
                      +++ ..++.|.+|++....
T Consensus       243 yv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        243 YACDRTASLISVFSVSEDG  261 (330)
T ss_pred             EEecCCCCeEEEEEEeCCC
Confidence            555 447899999996543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=8.5e-14  Score=119.68  Aligned_cols=189  Identities=16%  Similarity=0.138  Sum_probs=145.9

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGP   95 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~   95 (285)
                      ..++.++.++.+-+||...+.....+..+.-.           --....-+.++++.-++++|+ -+.|.+|.....   
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-----------~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d---  165 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-----------TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED---  165 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhcCCCceE-----------EEEeEEEEeccCcEEEEEeccccccEEEEecccc---
Confidence            68888999999999999866533222111100           001222334555556888876 899999999844   


Q ss_pred             CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-EEecccccceEeEEcCC
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPH  174 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~  174 (285)
                                   +....+.+|.+.  |..+.+ +.+|+++++.++|..+++|++++.+... +.-+|...|..+.|.|+
T Consensus       166 -------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  166 -------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             -------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence                         233368899987  999997 9999999999999999999999988776 67789999999999998


Q ss_pred             CCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          175 IPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       175 ~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                        .++|++.|.+.++|+.+...+..+.+|...-+............+++..|+.+++|++...
T Consensus       230 --~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 --RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             --eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence              8999999999999988777776777777665555445556668999999999999998654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=7.1e-13  Score=114.57  Aligned_cols=213  Identities=9%  Similarity=0.095  Sum_probs=136.3

Q ss_pred             cceeEEEE-cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccc-ccccCCCCCcceEEEEEecCC-CEEEEec
Q 023246            4 IRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC-PRHLIGKNNIHITGLAYSNTS-ELLISYN   80 (285)
Q Consensus         4 ~~v~~~~~-s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~i~~s~~~-~~l~s~~   80 (285)
                      ..|+.+.+ +.++..++++|+.||.||||+-.....    +..+.+..+. ......+-.+.-.-+.|..+. .++++|.
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC
Confidence            46777776 445557999999999999998543211    1111222221 111111222222345676654 4555577


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---eEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVR  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~  157 (285)
                      -..|+|||....                .....+....+ ..++++.-....|+.+++|..||.|++||.+...   .+.
T Consensus      1186 ~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeEEEEEecccc----------------eeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            889999999876                34444443222 2377776534568999999999999999987543   466


Q ss_pred             EEeccccc--ceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCC---CCc--ccceeeccccCCCceEEEeCCCCeE
Q 023246          158 LMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP---DNA--EKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       158 ~~~~h~~~--v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                      ..+.|+..  |..+.+-+.|-. |++|+.||.|++||++.....++.   .|-  +..............+++|+. +.|
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            67788876  999999987766 999999999999999884322211   111  111222222334557888888 999


Q ss_pred             EEEEecccc
Q 023246          230 HVLRLQRRQ  238 (285)
Q Consensus       230 ~vwd~~~~~  238 (285)
                      +||++...+
T Consensus      1328 kIy~~~G~~ 1336 (1387)
T KOG1517|consen 1328 KIYSLSGEQ 1336 (1387)
T ss_pred             EEEecChhh
Confidence            999987653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=2.7e-14  Score=116.10  Aligned_cols=154  Identities=19%  Similarity=0.318  Sum_probs=122.3

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +++-|.++.|+|.. .+|++++. ..|+|||+...++.              +.+ ......|..++.+|.|..|+.+ .
T Consensus       565 skG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelv--------------KkL-~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  565 SKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELV--------------KKL-LTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             cCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHH--------------HHH-hcCCeeeeeeeecCCCCeEEEecC
Confidence            46789999999975 56666654 78999999876632              222 2234578999999999766665 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC------CC-
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG-  153 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~------~~-  153 (285)
                      |+.++.||+.-..               +..+++..|...  +++++| ++.-.++++|+.||++.|+.-.      .. 
T Consensus       628 d~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp  689 (733)
T KOG0650|consen  628 DKKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNP  689 (733)
T ss_pred             CCeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence            9999999998653               577888888876  999998 8899999999999999988521      11 


Q ss_pred             --ceEEEEeccccc----ceEeEEcCCCCeEEEEecCCcEEEE
Q 023246          154 --KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLW  190 (285)
Q Consensus       154 --~~~~~~~~h~~~----v~~~~~~p~~~~l~t~~~d~~i~iw  190 (285)
                        -++..+.+|...    |..+.|+|...+|++++.||+|++|
T Consensus       690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence              245677788755    8888999999999999999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1e-14  Score=117.51  Aligned_cols=166  Identities=14%  Similarity=0.142  Sum_probs=123.7

Q ss_pred             cccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-ecccCceeeeeEEEe
Q 023246           52 CPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFF  129 (285)
Q Consensus        52 ~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~  129 (285)
                      .....+.+|++-|+++.|+.+|.+|++|+ |-.+.|||.-..                +.++.+ .+|...  |.++.|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFv  102 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFV  102 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeee
Confidence            33444589999999999999999999986 888999999765                555555 478766  9999984


Q ss_pred             cC-CCcEEEEecCCCeEEEEecCC----------CceEEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC
Q 023246          130 GP-NDEYVMSGSDCGHLFIWKKKG----------GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       130 ~~-~~~~l~~~~~dg~v~vwd~~~----------~~~~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      .. +.+.+++|..|..|+++|+..          .+..+.+..|...|..++-.|++. .+.++++||+|+-+|++....
T Consensus       103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence            32 567889999999999999874          234556667999999999999994 599999999999999986421


Q ss_pred             --CC------CCCCc---ccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          198 --PP------LPDNA---EKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       198 --~~------~~~~~---~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                        ..      +....   -...++........+++.|+.|-..++||.+
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence              11      11111   1122222233345688899999999999943

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=4.5e-15  Score=124.84  Aligned_cols=113  Identities=15%  Similarity=0.305  Sum_probs=104.8

Q ss_pred             CCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           58 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      .+|...|.|+.|...|+++++|+ |..++||...+.                .++...++|...  |+.++. +.+..++
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----------------~~lAs~rGhs~d--itdlav-s~~n~~i  247 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----------------RCLASCRGHSGD--ITDLAV-SSNNTMI  247 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccch----------------hhhccCCCCccc--cchhcc-chhhhhh
Confidence            58999999999999999999975 899999999888                788999999987  999996 8888899


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      ++++.|..|++|.+.++.++..+.+|++.|++++|+|-.    +.+.||++++||.+
T Consensus       248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            999999999999999999999999999999999999964    77889999999987

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.3e-12  Score=95.25  Aligned_cols=190  Identities=13%  Similarity=0.141  Sum_probs=126.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-ecCCCEEEEecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~~~l~s~~d~   82 (285)
                      -.|+++...|.. +-+++++.|+.++-||+++|+               ....+++|++.|.++.- +..++.|..+.||
T Consensus       115 PeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~---------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG  178 (325)
T KOG0649|consen  115 PEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGR---------------IQREYRGHTDYVHSVVGRNANGQILSGAEDG  178 (325)
T ss_pred             CccceeEeccCC-CcEEEecCCeEEEEEEecCCE---------------EEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence            468999999975 555555589999999999996               33334899999999988 4455566556799


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc--------eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      ++++||.++.                +.++.+.....+        ..|.+++   .+...+++|+ ...+.+|.++..+
T Consensus       179 tvRvWd~kt~----------------k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  179 TVRVWDTKTQ----------------KHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             cEEEEecccc----------------ceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCC
Confidence            9999999988                555555432221        2345554   3556777665 5779999999988


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      +...+.- ...|..+.|..  ..+++++.-..|.-|.+.+.-....+......+...+....-..+-.++....+.++
T Consensus       239 ~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  239 STCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceEEEec-ccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            8777763 45677778854  467788877889999886643333333333333333332233334444445555555

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.8e-12  Score=105.81  Aligned_cols=193  Identities=10%  Similarity=0.051  Sum_probs=119.0

Q ss_pred             cceeEEEEcCCCCcEEEEee---CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            4 IRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      ..+.+.+|+||+ ..|+..+   .+..+.+|++.+++..            ..    ....+.+..+.|+|+|+.|+.. 
T Consensus       199 ~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~------------~l----~~~~~~~~~~~~SPDG~~La~~~  261 (429)
T PRK03629        199 QPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVR------------QV----ASFPRHNGAPAFSPDGSKLAFAL  261 (429)
T ss_pred             CceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeE------------Ec----cCCCCCcCCeEECCCCCEEEEEE
Confidence            367889999987 5665543   2457899999877521            11    1112234468999999977653 


Q ss_pred             c-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC-C--eEEEEecCCC
Q 023246           80 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGG  153 (285)
Q Consensus        80 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~v~vwd~~~~  153 (285)
                      . ++  .|++||+.++                 ....+..+...  +....| +|+++.|+..+.+ +  .|+++|+.++
T Consensus       262 ~~~g~~~I~~~d~~tg-----------------~~~~lt~~~~~--~~~~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        262 SKTGSLNLYVMDLASG-----------------QIRQVTDGRSN--NTEPTW-FPDSQNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             cCCCCcEEEEEECCCC-----------------CEEEccCCCCC--cCceEE-CCCCCEEEEEeCCCCCceEEEEECCCC
Confidence            2 44  5889999775                 23333333322  667785 9999988776654 3  5666677766


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCe--
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI--  228 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~--  228 (285)
                      +. ..+..+........|+|+|++++..+.+   ..|.+||+.++....+.... ...... ++++++.++..+.++.  
T Consensus       322 ~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p~-~SpDG~~i~~~s~~~~~~  398 (429)
T PRK03629        322 AP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDETPS-IAPNGTMVIYSSSQGMGS  398 (429)
T ss_pred             Ce-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CCCCce-ECCCCCEEEEEEcCCCce
Confidence            54 3344344456678999999998776543   35888999877654443211 111222 3456666666665543  


Q ss_pred             -EEEEEecc
Q 023246          229 -MHVLRLQR  236 (285)
Q Consensus       229 -i~vwd~~~  236 (285)
                       +.++++..
T Consensus       399 ~l~~~~~~G  407 (429)
T PRK03629        399 VLNLVSTDG  407 (429)
T ss_pred             EEEEEECCC
Confidence             56666543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=3.1e-12  Score=96.73  Aligned_cols=177  Identities=12%  Similarity=0.124  Sum_probs=130.5

Q ss_pred             CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccc
Q 023246           26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDL  105 (285)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~  105 (285)
                      +.|.|||=...+              +..++  ....+|.++.++++  .++....+.|+||......            
T Consensus        75 NkviIWDD~k~~--------------~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~------------  124 (346)
T KOG2111|consen   75 NKVIIWDDLKER--------------CIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP------------  124 (346)
T ss_pred             ceEEEEecccCc--------------EEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCCh------------
Confidence            579999944333              22221  33568999999876  7888889999999997542            


Q ss_pred             cCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCce--EEEEecccccceEeEEcCCCCeEEEEe
Q 023246          106 QKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       106 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                         +.++.+....+++.+.+++ ...+..+|+. |-.-|.|.+-|+...+.  ...+.+|.+.|.+++.+.+|.++||+|
T Consensus       125 ---k~l~~~et~~NPkGlC~~~-~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS  200 (346)
T KOG2111|consen  125 ---KLLHVIETRSNPKGLCSLC-PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS  200 (346)
T ss_pred             ---hheeeeecccCCCceEeec-CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence               5667777666665566665 2444455554 66789999999876554  467889999999999999999999999


Q ss_pred             cCCc-EEEEcCCCCC-CCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          183 IEKT-VKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       183 ~d~~-i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ..|+ |||||...+. +.++..  ....+++++. +++..+++..|..|+++||.++..
T Consensus       201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEEEeecC
Confidence            9996 7999998776 455442  2344555544 667778888898999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.53  E-value=1.3e-13  Score=113.75  Aligned_cols=215  Identities=11%  Similarity=0.091  Sum_probs=142.3

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCC-------CCCcc---------ccc-----cccc-CCC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTPVD---------TFC-----PRHL-IGK   59 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-------~~~~~---------~~~-----~~~~-~~~   59 (285)
                      ++.-|.|++|+.+| .+||+|+.|+.|.+|+..-...++....       ..|+.         .|.     .+.+ ...
T Consensus        52 HKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k  130 (1081)
T KOG1538|consen   52 HKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK  130 (1081)
T ss_pred             ccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh
Confidence            46689999999986 9999999999999998763222211110       01110         000     0011 012


Q ss_pred             CCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-----
Q 023246           60 NNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----  133 (285)
Q Consensus        60 h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----  133 (285)
                      ....+.+++|..||++|+-|- +|+|.+-+....                +....-+......+|.+++| +|+.     
T Consensus       131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE----------------ek~~I~Rpgg~Nspiwsi~~-~p~sg~G~~  193 (1081)
T KOG1538|consen  131 SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE----------------EKVKIERPGGSNSPIWSICW-NPSSGEGRN  193 (1081)
T ss_pred             hheeEEEeeecCCCcEEEEeccCceEEeecCCCC----------------cceEEeCCCCCCCCceEEEe-cCCCCCCcc
Confidence            245678889999999999985 999998866543                22222222222245999997 7754     


Q ss_pred             cEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccc
Q 023246          134 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQ  213 (285)
Q Consensus       134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  213 (285)
                      ..++......++.++.+. |+.+..-+.-.-...|+.+.|+|.+++.|+.|+.+++|.-.+-.+-++.....++-.+. .
T Consensus       194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~-~  271 (1081)
T KOG1538|consen  194 DILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQ-A  271 (1081)
T ss_pred             ceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEE-E
Confidence            356666667777777775 55554333334456789999999999999999999999766655555544445554333 3


Q ss_pred             cCCCceEEEeCCCCeEEEEEecc
Q 023246          214 GREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .+++.+++.|+.||+|-.|++-.
T Consensus       272 ~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  272 KPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccCCceEEEEEccCeeehhhhHH
Confidence            45677889999999999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=5e-13  Score=99.06  Aligned_cols=116  Identities=15%  Similarity=0.302  Sum_probs=84.5

Q ss_pred             ccceeEEEEcCCCCcEEEE--eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246            3 SIRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~t--g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      .++|.+++|+|++ +.||+  |..++.|.+||++ ++              ....+   +...+..+.|+|+|++|+.+.
T Consensus        59 ~~~I~~~~WsP~g-~~favi~g~~~~~v~lyd~~-~~--------------~i~~~---~~~~~n~i~wsP~G~~l~~~g  119 (194)
T PF08662_consen   59 EGPIHDVAWSPNG-NEFAVIYGSMPAKVTLYDVK-GK--------------KIFSF---GTQPRNTISWSPDGRFLVLAG  119 (194)
T ss_pred             CCceEEEEECcCC-CEEEEEEccCCcccEEEcCc-cc--------------EeEee---cCCCceEEEECCCCCEEEEEE
Confidence            3579999999986 55433  4567899999997 32              11111   245678899999999888743


Q ss_pred             ----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------CCeEEEEec
Q 023246           81 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKK  150 (285)
Q Consensus        81 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~vwd~  150 (285)
                          .|.|.+||....                +.+..+...  .  +..++| +|+|++++++..      |..++||+.
T Consensus       120 ~~n~~G~l~~wd~~~~----------------~~i~~~~~~--~--~t~~~W-sPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  120 FGNLNGDLEFWDVRKK----------------KKISTFEHS--D--ATDVEW-SPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             ccCCCcEEEEEECCCC----------------EEeeccccC--c--EEEEEE-cCCCCEEEEEEeccceeccccEEEEEe
Confidence                578999999865                455444322  2  678885 999999999764      788999998


Q ss_pred             CCCceEEEE
Q 023246          151 KGGKLVRLM  159 (285)
Q Consensus       151 ~~~~~~~~~  159 (285)
                      . |+.+...
T Consensus       179 ~-G~~l~~~  186 (194)
T PF08662_consen  179 Q-GRLLYKK  186 (194)
T ss_pred             c-CeEeEec
Confidence            5 7766554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=5e-12  Score=98.36  Aligned_cols=166  Identities=14%  Similarity=0.160  Sum_probs=124.1

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      +-|+++.|+.. +.+|++|+.|..+++|++...-..   +.++|+.     .....|...|.|++|....+++.+| .++
T Consensus        57 GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~---k~~KPI~-----~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   57 GCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVR---KTPKPIG-----VMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             cccceeeeccC-CeEEeecCCcceeeeechHHHHhh---cCCCCce-----eccCccccceEEEEEccCCeeEecCCCcc
Confidence            56899999996 599999999999999998632110   1122221     1123566899999999998999996 599


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eE--EEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LV--RLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~--~~~  159 (285)
                      +|.+.|+.+.                +.+..+....+...|+.+.. +|..+.+++.+.++.|.+||.+..+ .+  ..+
T Consensus       128 ~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  128 TVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             eeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence            9999999987                45555544333334999986 8999999999999999999988655 22  122


Q ss_pred             ecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC
Q 023246          160 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~  195 (285)
                      .........+.|+|.... |++.+..+-+.+||.+..
T Consensus       191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             cCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            223456788899997765 788888889999998644

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=9.8e-12  Score=107.73  Aligned_cols=209  Identities=14%  Similarity=0.170  Sum_probs=138.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEE-ecC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLIS-YND   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s-~~d   81 (285)
                      +-..+.|+|-. ..++++.....|+|||.+.++....+....            .....|+.+.+-.+-  .++.+ ++|
T Consensus      1066 ~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGA------------FPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             CCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCC------------CCCCccceeeeecccchhheeeeccC
Confidence            34467899975 788888878899999999888654433222            123468888876643  35555 569


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc----eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS----QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      |.|+||+--....           .+.+.+..+.+-.+.    .....+.=|.....+|+++++-..|+|||+...+.+.
T Consensus      1133 GvIRIwk~y~~~~-----------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKW-----------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             ceEEEeccccccc-----------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            9999998543210           111222222211100    0012222256666777777778999999999777777


Q ss_pred             EEec-ccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC----CCCCCCCccc--ceeeccccCCCceEEEeCCCCeE
Q 023246          158 LMVG-DRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEK--IMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       158 ~~~~-h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                      .+.. ....|+++.-+- .|+.++.|..||.|++||.+...    +.....|...  ++........-+.+++++.+|.|
T Consensus      1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred             ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence            7653 345677776543 46889999999999999987543    3345556655  66665544444579999999999


Q ss_pred             EEEEeccc
Q 023246          230 HVLRLQRR  237 (285)
Q Consensus       230 ~vwd~~~~  237 (285)
                      ++||++..
T Consensus      1282 ~~~DlR~~ 1289 (1387)
T KOG1517|consen 1282 QLLDLRMS 1289 (1387)
T ss_pred             EEEecccC
Confidence            99999984

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1e-11  Score=104.26  Aligned_cols=193  Identities=10%  Similarity=0.051  Sum_probs=117.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      ..+.+.+|+|++ +.|+..+.+   ..|.+||+.+++..               .+ ..+.+....++|+|+|+.++. .
T Consensus       204 ~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~l~~~~  266 (433)
T PRK04922        204 EPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE---------------LV-ASFRGINGAPSFSPDGRRLALTL  266 (433)
T ss_pred             CccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE---------------Ee-ccCCCCccCceECCCCCEEEEEE
Confidence            467889999986 677666533   46999999877521               01 122334457899999986653 3


Q ss_pred             -cCC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCC
Q 023246           80 -NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGG  153 (285)
Q Consensus        80 -~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~  153 (285)
                       .++  .|++||+.++                 ....+..+...  ....+| +|++++++..+. +|  .|+++++.++
T Consensus       267 s~~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        267 SRDGNPEIYVMDLGSR-----------------QLTRLTNHFGI--DTEPTW-APDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             eCCCCceEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence             344  6999999876                 23444444322  456776 999998877654 44  4777788776


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCC---CC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP---DV  227 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---d~  227 (285)
                      +... +..+......++|+|++++++..+.++   .|.+||+.++....+... ....... +.++++.++..+.   .+
T Consensus       327 ~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~-~~~~~p~-~spdG~~i~~~s~~~g~~  403 (433)
T PRK04922        327 SAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG-SLDESPS-FAPNGSMVLYATREGGRG  403 (433)
T ss_pred             CeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC-CCCCCce-ECCCCCEEEEEEecCCce
Confidence            6433 322334455789999999987765433   699999987765444321 1111222 2444444443333   24


Q ss_pred             eEEEEEecc
Q 023246          228 IMHVLRLQR  236 (285)
Q Consensus       228 ~i~vwd~~~  236 (285)
                      .|+++++..
T Consensus       404 ~L~~~~~~g  412 (433)
T PRK04922        404 VLAAVSTDG  412 (433)
T ss_pred             EEEEEECCC
Confidence            566666643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=5.7e-12  Score=95.34  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=115.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      +.+|.++.+.++   .+++. ..+.|.||...+. +.+..+            .. ........+++-.....+||. |.
T Consensus        94 ~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~------------et-~~NPkGlC~~~~~~~k~~LafPg~  156 (346)
T KOG2111|consen   94 NSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVI------------ET-RSNPKGLCSLCPTSNKSLLAFPGF  156 (346)
T ss_pred             ccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeee------------ec-ccCCCceEeecCCCCceEEEcCCC
Confidence            457888888884   33333 3579999998743 321111            11 111222333333333346666 54


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe-EEEEecCCCceEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL  158 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~  158 (285)
                       -|.|.|-|+....              ......+..|...  |.+++. +.+|..+||++..|+ |++||..+|+.+.+
T Consensus       157 k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E  219 (346)
T KOG2111|consen  157 KTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQE  219 (346)
T ss_pred             ccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence             7999999998651              0134778899987  999996 999999999999987 78999999999998


Q ss_pred             Eec--ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          159 MVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       159 ~~~--h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +..  ....|.+++|+|+..+|+.+|..|+++|+.++...
T Consensus       220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            873  34679999999999999999999999999986543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=1.3e-13  Score=124.57  Aligned_cols=193  Identities=13%  Similarity=0.201  Sum_probs=145.6

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .|.++.=+|.. .+.+||+.||.|++|.-..++.+.           +...  .+ ...|+.+.|+.+|..+..+ .||.
T Consensus      2210 ~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~-----------~~rt--~g-~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVV-----------CFRT--AG-NSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred             ceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEE-----------Eeec--cC-cchhhhhhhcccCCceeeeccCCc
Confidence            45566668864 688899999999999988776321           1111  12 3789999999999887775 5999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEEecC-CCc--eEE
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK-GGK--LVR  157 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vwd~~-~~~--~~~  157 (285)
                      +.+|.+..                 +.....+.|.-.  ...+.|.   +..+++++   +++.+.+||.. .+.  +++
T Consensus      2275 l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2275 LSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             eeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccceee
Confidence            99999873                 455666777744  7888874   25666644   58899999943 222  344


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                        ..|.+.++++++-|..+.|++|+.+|.|++||++..++ +.++.           .....++++++..|.++||++..
T Consensus      2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LDTREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hhhhheeeccCcccceEEEEccc
Confidence              78999999999999999999999999999999988775 33332           11344899999999999999999


Q ss_pred             cccceeEeeec
Q 023246          237 RQTLAYRERRY  247 (285)
Q Consensus       237 ~~~~~~~~~~~  247 (285)
                      ...+..+.+..
T Consensus      2400 ~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2400 FGLLHTFPSEH 2410 (2439)
T ss_pred             cchhhcCchhh
Confidence            88877765444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=3.4e-12  Score=108.25  Aligned_cols=217  Identities=16%  Similarity=0.264  Sum_probs=149.9

Q ss_pred             ccceeEEEEcCCCC--cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccc---------------------------
Q 023246            3 SIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP---------------------------   53 (285)
Q Consensus         3 ~~~v~~~~~s~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---------------------------   53 (285)
                      ..+++++.+.|...  .++++.+.||.|++||...+.+++.+...-++.....                           
T Consensus        57 ~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~  136 (792)
T KOG1963|consen   57 TAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKK  136 (792)
T ss_pred             cCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccc
Confidence            45778888888654  5777999999999999998887665543322211100                           


Q ss_pred             -----------------cccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec
Q 023246           54 -----------------RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG  116 (285)
Q Consensus        54 -----------------~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (285)
                                       ..+...|.. -.+|.+++.|++.....+..+++|......            ........-..
T Consensus       137 ~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~------------~~~~~~~~~~~  203 (792)
T KOG1963|consen  137 LSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT------------KHTSSRDITVH  203 (792)
T ss_pred             cccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc------------eeeccchhhhh
Confidence                             000011111 345666666666666667778888887641            00000011112


Q ss_pred             ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC----CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       117 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      |.-.  +++.++ +|+++++++|..||.|.+|.--.    ......++-|...|.+++|+++|.+|++|+..|.+-+|.+
T Consensus       204 Htf~--~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  204 HTFN--ITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hccc--ceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence            4433  788897 99999999999999999997332    2235667778899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          193 MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .+++.+-++....++..+.. ++++.+......|.+|++....+
T Consensus       281 ~T~~kqfLPRLgs~I~~i~v-S~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  281 ETGKKQFLPRLGSPILHIVV-SPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             cCCCcccccccCCeeEEEEE-cCCCCeEEEEecCceEEEEeccc
Confidence            99885556656666666655 46677777778899999987643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.5e-11  Score=103.23  Aligned_cols=158  Identities=11%  Similarity=0.076  Sum_probs=106.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeC---CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-E
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-S   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s   78 (285)
                      ...+.+.+|+||+ ..|+..+.   +..|.+||+.+++..               .+ ..+.+.+...+|+|+|+.|+ +
T Consensus       201 ~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~~  263 (435)
T PRK05137        201 SSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVMS  263 (435)
T ss_pred             CCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEEE
Confidence            3578899999987 66666543   468999999877521               11 23455677889999998665 3


Q ss_pred             ec-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-C--CeEEEEecCC
Q 023246           79 YN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKG  152 (285)
Q Consensus        79 ~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~vwd~~~  152 (285)
                      .+ ++  .|++||+.++                 ....+..+...  .....| +|+++.++..+. +  ..|+++|+..
T Consensus       264 ~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~g  323 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNADG  323 (435)
T ss_pred             EecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECCC
Confidence            33 44  4778888765                 33444444432  556775 999998877664 3  3688889876


Q ss_pred             CceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCC
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFP  198 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~  198 (285)
                      ++. ..+..+...+....|+|++++++....+   ..|.+|++.++...
T Consensus       324 ~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~  371 (435)
T PRK05137        324 SNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER  371 (435)
T ss_pred             CCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence            554 3444345567778999999998776643   36888888665543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.49  E-value=4.8e-12  Score=106.33  Aligned_cols=219  Identities=14%  Similarity=0.122  Sum_probs=141.6

Q ss_pred             ccceeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCcc-cCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE
Q 023246            3 SIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHW-YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s   78 (285)
                      +.+|+.+.|-..- +.-|++++.||.|..|+++.-.. ......+    ..........-...+++++|.+...  +++.
T Consensus       291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~----~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG  366 (555)
T KOG1587|consen  291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE----SKKHKGQQSSKAVGATSLKFEPTDPNHFIVG  366 (555)
T ss_pred             CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc----cccccccccccccceeeEeeccCCCceEEEE
Confidence            5678888886531 14599999999999998764331 0000000    0000000012234688999988653  4444


Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceEE
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVR  157 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~  157 (285)
                      ...|.|.--+-.... +..       ....+....+..|..+  |..+.+ +|-+..++..+.|.+|++|... ...++.
T Consensus       367 Te~G~v~~~~r~g~~-~~~-------~~~~~~~~~~~~h~g~--v~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~  435 (555)
T KOG1587|consen  367 TEEGKVYKGCRKGYT-PAP-------EVSYKGHSTFITHIGP--VYAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLL  435 (555)
T ss_pred             cCCcEEEEEeccCCc-ccc-------cccccccccccccCcc--eEeeec-CCCccceeeeeccceeEeccccCCCCcch
Confidence            568988774433221 000       0111233455667766  999997 7876655554449999999987 677888


Q ss_pred             EEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          158 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      .+..+...|++++|||...- |+++..||.|.+||+....   ..+.... ..+.....+...++.++.|...|.+++|+
T Consensus       436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            88878888999999998776 8888889999999996543   2333223 44444444455678899999999999999


Q ss_pred             eccc
Q 023246          234 LQRR  237 (285)
Q Consensus       234 ~~~~  237 (285)
                      +...
T Consensus       515 l~~~  518 (555)
T KOG1587|consen  515 LSES  518 (555)
T ss_pred             cCch
Confidence            8643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.49  E-value=1.7e-11  Score=99.41  Aligned_cols=204  Identities=11%  Similarity=0.119  Sum_probs=119.2

Q ss_pred             eeEEEEcCCCCcEEEEee-CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCC
Q 023246            6 LNAIVIDPRNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE   82 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~   82 (285)
                      ...++|+|++ ++|++++ .++.|.+|++.+......          .....  .+......++++|+++++++ . .++
T Consensus        82 p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~  148 (330)
T PRK11028         82 PTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------PIQII--EGLEGCHSANIDPDNRTLWVPCLKED  148 (330)
T ss_pred             ceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------ceeec--cCCCcccEeEeCCCCCEEEEeeCCCC
Confidence            4579999987 5555554 589999999974321100          00001  12234667889999987755 4 389


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCC--Cc--eEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK--LVR  157 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~--~~--~~~  157 (285)
                      .|.+||+.....          +.. ........... .....+.| +|++++++++.. ++.|.+|++..  ++  .+.
T Consensus       149 ~v~v~d~~~~g~----------l~~-~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        149 RIRLFTLSDDGH----------LVA-QEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             EEEEEEECCCCc----------ccc-cCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence            999999975310          000 00011111111 12567887 999999988776 99999999873  33  233


Q ss_pred             EEecc------cccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC-CCCCCCCcc---cceeeccccCCCceEEE-eCC
Q 023246          158 LMVGD------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAE---KIMKANKQGREDHSRIT-LTP  225 (285)
Q Consensus       158 ~~~~h------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~-~s~  225 (285)
                      .+..+      ......+.++|++++++++. .++.|.+|++.... ...+.++..   ....+. ..++++++++ ...
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~-~~~dg~~l~va~~~  294 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFN-IDHSGKYLIAAGQK  294 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceE-ECCCCCEEEEEEcc
Confidence            33221      11233588999999988875 47899999985432 111111110   111111 2334545554 445


Q ss_pred             CCeEEEEEecc
Q 023246          226 DVIMHVLRLQR  236 (285)
Q Consensus       226 d~~i~vwd~~~  236 (285)
                      ++.|.+|++..
T Consensus       295 ~~~v~v~~~~~  305 (330)
T PRK11028        295 SHHISVYEIDG  305 (330)
T ss_pred             CCcEEEEEEcC
Confidence            89999998864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=5.9e-12  Score=102.50  Aligned_cols=193  Identities=13%  Similarity=0.124  Sum_probs=141.2

Q ss_pred             CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE------ec--------------CCC
Q 023246           15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN--------------TSE   74 (285)
Q Consensus        15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~------s~--------------~~~   74 (285)
                      ...++|....||.+++|+...++....+....            .-.+..++..|      +|              +..
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~   71 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS   71 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccch------------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence            45799999999999999999887532221111            11223333333      11              223


Q ss_pred             EEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC
Q 023246           75 LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus        75 ~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  153 (285)
                      +++-|. .|.|.+|+...+                +....+........|.++.+ +.+-..|.+++.|+.+..|+...+
T Consensus        72 ~lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             EEEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccc
Confidence            555565 899999999888                56666664333344888885 888899999999999999999999


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccC----CCceEE-EeCCCC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR----EDHSRI-TLTPDV  227 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~-~~s~d~  227 (285)
                      +.++.+......+.+++.+||+.++++++  ++|++||+++.++ ..+.+|..++.++.....    .+.+++ +...+.
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r  212 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER  212 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence            99999998889999999999999999998  7899999999884 789999998876654333    123443 344456


Q ss_pred             eEEEEEecccc
Q 023246          228 IMHVLRLQRRQ  238 (285)
Q Consensus       228 ~i~vwd~~~~~  238 (285)
                      -+.+|-+....
T Consensus       213 ~i~~w~v~~~~  223 (541)
T KOG4547|consen  213 GITVWVVEKED  223 (541)
T ss_pred             ceeEEEEEccc
Confidence            77888766543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=6e-11  Score=91.46  Aligned_cols=163  Identities=10%  Similarity=0.163  Sum_probs=108.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc-CCcCCCCCccccccccc-CCCCCcceEEEEEecCCCEEEEec-
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY-SPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ..|+|++|-|-+..-|+.|+. +-|.||.....-.. ..+...   .+.+...+ ..+| .+|++++|.+||..+++++ 
T Consensus       141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~---s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~  215 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMM---STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF  215 (445)
T ss_pred             cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccc---cccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence            468999999988788888887 45889987632211 111100   00011111 1344 6899999999999999864 


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRL  158 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~  158 (285)
                       |..|.|||..++                ..+........  .+.-+.| +|++.++++++-|+..++|+.. +....+.
T Consensus       216 gsssi~iWdpdtg----------------~~~pL~~~glg--g~slLkw-SPdgd~lfaAt~davfrlw~e~q~wt~erw  276 (445)
T KOG2139|consen  216 GSSSIMIWDPDTG----------------QKIPLIPKGLG--GFSLLKW-SPDGDVLFAATCDAVFRLWQENQSWTKERW  276 (445)
T ss_pred             CcceEEEEcCCCC----------------CcccccccCCC--ceeeEEE-cCCCCEEEEecccceeeeehhcccceecce
Confidence             899999999987                22222211222  2777885 9999999999999999999643 3334433


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      ..+ .+.|...+|+|+|++|+.++. |.=++|.+
T Consensus       277 ~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl  308 (445)
T KOG2139|consen  277 ILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSL  308 (445)
T ss_pred             ecc-CCceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence            333 458999999999998554432 33445543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.48  E-value=1.9e-12  Score=97.99  Aligned_cols=157  Identities=14%  Similarity=0.146  Sum_probs=125.4

Q ss_pred             CcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           61 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      ..+|+|.+|++++..+|.+ +...|.||.....             ..++..+++..|...  |+.++| +|..+.|+++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-------------~~w~~~htls~Hd~~--vtgvdW-ap~snrIvtc   73 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-------------DLWEPAHTLSEHDKI--VTGVDW-APKSNRIVTC   73 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCC-------------CCceeceehhhhCcc--eeEEee-cCCCCceeEc
Confidence            4589999999999999886 5789999998765             224677888889866  999995 9999999999


Q ss_pred             cCCCeEEEEecC-CC--ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC----CC-CCCcccceeec
Q 023246          140 SDCGHLFIWKKK-GG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP----PL-PDNAEKIMKAN  211 (285)
Q Consensus       140 ~~dg~v~vwd~~-~~--~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~----~~-~~~~~~~~~~~  211 (285)
                      +.|..-++|... .+  ++...+..++..++++.|+|.++.|++|+.-..|.+|-++...--    .+ +.....+.++.
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence            999999999984 33  355566678899999999999999999999999999988766521    12 12334455555


Q ss_pred             cccCCCceEEEeCCCCeEEEEEe
Q 023246          212 KQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      | .+++-++++|+.|+..+||..
T Consensus       154 W-hpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  154 W-HPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             c-cCCcceecccccCcceeEEEE
Confidence            5 445668889999999999965

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=1.7e-12  Score=101.50  Aligned_cols=163  Identities=13%  Similarity=0.160  Sum_probs=118.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---C-EEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E-LLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~-~l~s   78 (285)
                      ++.|.++.|+||+ .+|++-+.| ..+||+..++..+....         +    ..-......+.|+.++   . ++++
T Consensus       186 ~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t---------~----~~k~~~~~~cRF~~d~~~~~l~laa  250 (398)
T KOG0771|consen  186 HAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT---------P----FSKDEMFSSCRFSVDNAQETLRLAA  250 (398)
T ss_pred             cCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC---------C----cccchhhhhceecccCCCceEEEEE
Confidence            5789999999986 899999999 99999999985322111         0    2223455677888776   2 3344


Q ss_pred             e-c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE
Q 023246           79 Y-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        79 ~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  156 (285)
                      . . .+.|+.|++....+.          .-.+..+....+   +.|.+++. +++|++++.|+.||.|.+++..+-+.+
T Consensus       251 ~~~~~~~v~~~~~~~w~~~----------~~l~~~~~~~~~---~siSsl~V-S~dGkf~AlGT~dGsVai~~~~~lq~~  316 (398)
T KOG0771|consen  251 SQFPGGGVRLCDISLWSGS----------NFLRLRKKIKRF---KSISSLAV-SDDGKFLALGTMDGSVAIYDAKSLQRL  316 (398)
T ss_pred             ecCCCCceeEEEeeeeccc----------cccchhhhhhcc---CcceeEEE-cCCCcEEEEeccCCcEEEEEeceeeee
Confidence            3 3 677888777544110          000111112222   23899997 999999999999999999999888877


Q ss_pred             EEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          157 RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       157 ~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      +.. +.|...|+.+.|+|+.+++++.+.|.++.+..+..
T Consensus       317 ~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  317 QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            655 47999999999999999999999999999988755

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=7.9e-14  Score=110.19  Aligned_cols=186  Identities=13%  Similarity=0.243  Sum_probs=138.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .|.++.|-.. ..+|| ..+...+.|||-..-++-            |+.    . ...|..+.|-|..-+|+++ ..|.
T Consensus       172 tv~Dv~~LHn-eq~~A-VAQK~y~yvYD~~GtElH------------Clk----~-~~~v~rLeFLPyHfLL~~~~~~G~  232 (545)
T KOG1272|consen  172 TVRDVTFLHN-EQFFA-VAQKKYVYVYDNNGTELH------------CLK----R-HIRVARLEFLPYHFLLVAASEAGF  232 (545)
T ss_pred             hhhhhhhhcc-hHHHH-hhhhceEEEecCCCcEEe------------ehh----h-cCchhhhcccchhheeeecccCCc
Confidence            3556666663 24444 556788999997633321            222    1 2368889999988888885 4899


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  163 (285)
                      ++--|+..+                +.+..+......  +..++- +|-+-.+-+|...|+|.+|.....+++..+..|.
T Consensus       233 L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~  293 (545)
T KOG1272|consen  233 LKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR  293 (545)
T ss_pred             eEEEeechh----------------hhhHHHHccCCc--cchhhc-CCccceEEEcCCCceEEecCCCCcchHHHHHhcC
Confidence            999999998                788777766655  666774 8888889999999999999999999999999999


Q ss_pred             ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      ++|.++++.|+|+|++|.+.|..++|||++.-. +.++.. +...-.     ....+-+++.+....+.+|.
T Consensus       294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~l-----s~SqkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNL-----SLSQKGLLALSYGDHVQIWK  360 (545)
T ss_pred             CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccc-----ccccccceeeecCCeeeeeh
Confidence            999999999999999999999999999998765 333322 222211     22233566777788899994

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=9.4e-11  Score=98.52  Aligned_cols=158  Identities=9%  Similarity=0.080  Sum_probs=103.8

Q ss_pred             CCCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC
Q 023246           58 GKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND  133 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  133 (285)
                      ..|...+...+|+|+|+.|+..+    +..|++||+.++                 ....+..+...  +....| +|+|
T Consensus       198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-----------------~~~~l~~~~g~--~~~~~~-SPDG  257 (435)
T PRK05137        198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-----------------QRELVGNFPGM--TFAPRF-SPDG  257 (435)
T ss_pred             ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-----------------cEEEeecCCCc--ccCcEE-CCCC
Confidence            45677899999999999776632    568999999876                 22344444433  667775 9999


Q ss_pred             cEEE-EecCCCe--EEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccc
Q 023246          134 EYVM-SGSDCGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKI  207 (285)
Q Consensus       134 ~~l~-~~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~  207 (285)
                      +.++ +.+.++.  |++||+.+++. ..+..+........|+|+++.++..+. ++  .|.+||+.++....+.......
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            8775 5555554  88889987755 445556666778999999999877663 33  6888888777654443222222


Q ss_pred             eeeccccCCCceEEEeCCC---CeEEEEEeccc
Q 023246          208 MKANKQGREDHSRITLTPD---VIMHVLRLQRR  237 (285)
Q Consensus       208 ~~~~~~~~~~~~~~~~s~d---~~i~vwd~~~~  237 (285)
                      .... ++++++.++..+.+   ..|.+||+...
T Consensus       337 ~~~~-~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        337 STPV-WSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             cCeE-ECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            2222 34555555443332   46788887543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=3.8e-11  Score=102.01  Aligned_cols=207  Identities=14%  Similarity=0.173  Sum_probs=144.8

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYL   86 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~i   86 (285)
                      ++.+++.+ ++. .-..+..+.+|+..++..           ..........|.-.+++.+++|+++++|++. ||.|.+
T Consensus       165 ~I~~~~~g-e~~-~i~~~~~~~~~~v~~~~~-----------~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v  231 (792)
T KOG1963|consen  165 SIVDNNSG-EFK-GIVHMCKIHIYFVPKHTK-----------HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV  231 (792)
T ss_pred             cEEEcCCc-eEE-EEEEeeeEEEEEecccce-----------eeccchhhhhhcccceeEEeccccceEEEeccCCcEEE
Confidence            56777743 443 344567889999886531           1133333356777899999999999999985 999999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  166 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  166 (285)
                      |.--...            ......+.+.-|.++  |.+++| +++|.+|++|+.+|.+.+|.+.+++. .-+..-.++|
T Consensus       232 w~d~~~~------------~~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I  295 (792)
T KOG1963|consen  232 WRDFGSS------------DDSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPI  295 (792)
T ss_pred             Eeccccc------------cccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCCc-ccccccCCee
Confidence            9754310            011244667778776  999997 99999999999999999999998883 3334456899


Q ss_pred             eEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC---C-------cccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          167 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---N-------AEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~-------~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ..+.++||+.+.+....|..|.+-......+ ..+.+   .       ...........+..+.++-....|.|.+||+.
T Consensus       296 ~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~  375 (792)
T KOG1963|consen  296 LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY  375 (792)
T ss_pred             EEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence            9999999999999999999999987644322 11111   1       11111111122223356667788999999999


Q ss_pred             ccccceeE
Q 023246          236 RRQTLAYR  243 (285)
Q Consensus       236 ~~~~~~~~  243 (285)
                      +...+..+
T Consensus       376 td~~i~~~  383 (792)
T KOG1963|consen  376 TDSTIYKL  383 (792)
T ss_pred             ccceeeeE
Confidence            88777555

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=8.8e-12  Score=104.03  Aligned_cols=223  Identities=10%  Similarity=0.093  Sum_probs=154.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ++....|++|+.. ..++|+|+.||.+++..+.+.......+.-.....+...+.+.+|...|.-+.|+.+.+.|.++. 
T Consensus        13 nnvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            3567899999996 48999999999999999876543322222223344455666789999999999999999999875 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      +|.|.+|-+-.+                .-...+...+++..|.+++| +.+|..+.....||.|.+=.++ |..+.--.
T Consensus        92 ~GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvd-GNRIwgKe  153 (1189)
T KOG2041|consen   92 SGLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVD-GNRIWGKE  153 (1189)
T ss_pred             CceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeec-cceecchh
Confidence            999999999776                34445555555566899995 9999999999999999988876 44443221


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC------------CCCCcccceeeccc-------cCCCceEE
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP------------LPDNAEKIMKANKQ-------GREDHSRI  221 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~-------~~~~~~~~  221 (285)
                      -.......+.|++|.+.++.+-..|.+.++|..+.-...            +......+-.+.|.       .++...++
T Consensus       154 Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la  233 (1189)
T KOG2041|consen  154 LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA  233 (1189)
T ss_pred             cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence            112335578899999988888888999999975431111            01011112222221       12334666


Q ss_pred             EeCCCCeEEEEEecccccceeE
Q 023246          222 TLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .+-.+|.+.+..-.+...+..+
T Consensus       234 vcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  234 VCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             EEEcCceehhhhhcCCCCCeEE
Confidence            6777888888766555555444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=7.3e-11  Score=98.80  Aligned_cols=162  Identities=12%  Similarity=0.037  Sum_probs=100.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-   78 (285)
                      +..+.+.+|+|++ +.|+..+.+   ..|.+||+.+++..              . + ....+.+....|+|+|+.|+. 
T Consensus       195 ~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~--------------~-l-~~~~g~~~~~~~SPDG~~la~~  257 (427)
T PRK02889        195 PEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR--------------V-V-ANFKGSNSAPAWSPDGRTLAVA  257 (427)
T ss_pred             CCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE--------------E-e-ecCCCCccceEECCCCCEEEEE
Confidence            3567889999987 666665532   35999999877521              0 1 112334567899999987664 


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEE--ecCCCc
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIW--KKKGGK  154 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vw--d~~~~~  154 (285)
                      . .++...||.+....               .....+..+...  .....| +|+|+.++..+. +|...+|  ++.+++
T Consensus       258 ~~~~g~~~Iy~~d~~~---------------~~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        258 LSRDGNSQIYTVNADG---------------SGLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             EccCCCceEEEEECCC---------------CCcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            3 47766666543210               133444443322  455675 999998876554 4555555  455444


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPL  200 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~  200 (285)
                      .. .+..+.......+|+|+|++++..+.++   .|.+||+.++....+
T Consensus       320 ~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l  367 (427)
T PRK02889        320 AQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL  367 (427)
T ss_pred             eE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence            32 2222233345678999999988776554   699999987765444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.43  E-value=3.2e-11  Score=91.90  Aligned_cols=214  Identities=15%  Similarity=0.098  Sum_probs=126.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--   80 (285)
                      ..++.+++|||+|..+|.+...|-.|.+|.+.+.+....                ..-...+..++|+|+|++.+..+  
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~----------------~~pK~~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL----------------PHPKTNVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe----------------cccccCceeEEECCCCceeeeeecc
Confidence            357889999999878899999999999999987652111                11122346677777777655432  


Q ss_pred             CCc--EEE-----------EEcCCCC------CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           81 DEL--VYL-----------FEKNMGL------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        81 d~~--i~i-----------wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      |..  +.|           +++.+..      +|....+..++  +.-....+.-+. .-.+..++| +|.+++++.|+.
T Consensus       155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd--~~Leykv~aYe~-~lG~k~v~w-sP~~qflavGsy  230 (447)
T KOG4497|consen  155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD--NVLEYKVYAYER-GLGLKFVEW-SPCNQFLAVGSY  230 (447)
T ss_pred             cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec--chhhheeeeeee-ccceeEEEe-ccccceEEeecc
Confidence            321  111           1111110      00000000000  000001111111 122788885 999999999999


Q ss_pred             CCeEEEEecCCCceEE------------------------------------------------------------EEe-
Q 023246          142 CGHLFIWKKKGGKLVR------------------------------------------------------------LMV-  160 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~------------------------------------------------------------~~~-  160 (285)
                      |+.+++.+.-+-+...                                                            .++ 
T Consensus       231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp  310 (447)
T KOG4497|consen  231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP  310 (447)
T ss_pred             chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence            9999887643221110                                                            011 


Q ss_pred             -----cccccceEeEEcCCCCeEEEEecC--CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          161 -----GDRHVVNQLEPHPHIPMFATCGIE--KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       161 -----~h~~~v~~~~~~p~~~~l~t~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                           .....+.-++|++|..+++|-...  ..+-+||++..++........++....|..... .++.......+++|.
T Consensus       311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~  389 (447)
T KOG4497|consen  311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWA  389 (447)
T ss_pred             CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEc
Confidence                 012346678999999999887632  478999999988877666677777776644434 444455556699998


Q ss_pred             eccc
Q 023246          234 LQRR  237 (285)
Q Consensus       234 ~~~~  237 (285)
                      ....
T Consensus       390 psg~  393 (447)
T KOG4497|consen  390 PSGP  393 (447)
T ss_pred             CCCc
Confidence            6653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=3.9e-12  Score=103.31  Aligned_cols=167  Identities=16%  Similarity=0.218  Sum_probs=124.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .+++++|..++-+ .+|++|+.+|.|..||.++......+.....+...    ........|+++.|+.+|-.++.| +.
T Consensus       175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence            4689999999976 79999999999999999987654443322221110    001123359999999999888887 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      |.+.|||+++.                ++ .....|....+|..+.|...+++-.+...+...+++||-.+|+....+..
T Consensus       250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence            99999999986                23 34456766667999996333333344445578899999999999988875


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                       ...++.+++-|++-+++++-.+..+..|-+
T Consensus       313 -t~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  313 -TSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             -cCCcCceeeecCCceEEEecCCCcceeEEc
Confidence             456999999999999999998887766643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=1.4e-11  Score=103.13  Aligned_cols=166  Identities=11%  Similarity=0.050  Sum_probs=107.1

Q ss_pred             eeEEEEcCCCCcEEEEe-eCCCcEEEEE--ccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-c
Q 023246            6 LNAIVIDPRNPNYFAVG-GSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N   80 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg-~~dg~v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~   80 (285)
                      ..+++|+|++ ..|+.+ +.+|.+.||.  +.+++               ...+ ..+...+....|+|+|+.|+. + .
T Consensus       250 ~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~---------------~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~  312 (429)
T PRK01742        250 NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGT---------------PSQL-TSGAGNNTEPSWSPDGQSILFTSDR  312 (429)
T ss_pred             cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCC---------------eEee-ccCCCCcCCEEECCCCCEEEEEECC
Confidence            4468999987 555554 5788877765  44443               1112 345556788999999996665 4 3


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++...||++....               .....+ .+..    ....| +|++++++..+.++ +.+||+.+++......
T Consensus       313 ~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~  370 (429)
T PRK01742        313 SGSPQVYRMSASG---------------GGASLV-GGRG----YSAQI-SADGKTLVMINGDN-VVKQDLTSGSTEVLSS  370 (429)
T ss_pred             CCCceEEEEECCC---------------CCeEEe-cCCC----CCccC-CCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence            6788888875431               122222 2221    34565 99999998887765 5569998887543222


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcC---CCCCCCCCCCCcccceeecc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKIMKANK  212 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~  212 (285)
                      .  .....+.|+|++++|+.++.++.+.+|.+   .+.....+..+...+....|
T Consensus       371 ~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~w  423 (429)
T PRK01742        371 T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAW  423 (429)
T ss_pred             C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCccc
Confidence            2  23456889999999999998998887765   34445556555555544444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=1.4e-10  Score=97.29  Aligned_cols=156  Identities=12%  Similarity=0.065  Sum_probs=105.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      .+.+.+|+|++ .+|+.+..+   ..|++||+.+++..               .+ ..+...+.+++|+|+|+.|+. ..
T Consensus       191 ~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~~~~  253 (417)
T TIGR02800       191 PILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAVSLS  253 (417)
T ss_pred             ceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEEEEC
Confidence            57788999986 667666543   47999999877521               11 223445667899999986654 32


Q ss_pred             -C--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCCc
Q 023246           81 -D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK  154 (285)
Q Consensus        81 -d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~~  154 (285)
                       +  ..|++|++.++                 ....+..+...  .....| +++++.|+..+. .+  .|+++|+.+++
T Consensus       254 ~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       254 KDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence             3  46888998765                 22333333322  345665 899998876554 33  68888988766


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFP  198 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~  198 (285)
                      .. .+..+...+..+.|+|++++++.++.++   .|.+||+.++...
T Consensus       314 ~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       314 VR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             EE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            43 3444456677889999999988887765   7889998776543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=6.5e-12  Score=108.41  Aligned_cols=147  Identities=16%  Similarity=0.139  Sum_probs=120.7

Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEE
Q 023246           10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE   88 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd   88 (285)
                      .++++ .-++++|+.-+.|.+|+....+              . ...+.+|.+.|..+.|+.+|+++++. .|.++++|+
T Consensus       140 g~s~~-~~~i~~gsv~~~iivW~~~~dn--------------~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~  203 (967)
T KOG0974|consen  140 GDSAE-ELYIASGSVFGEIIVWKPHEDN--------------K-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWP  203 (967)
T ss_pred             eccCc-EEEEEeccccccEEEEeccccC--------------C-cceecccCCceEEEEEccCCcEEEEEecCcceeeee
Confidence            34564 4789999999999999988222              1 11338999999999999999999995 599999999


Q ss_pred             cCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc-ccc
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVV  166 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v  166 (285)
                      +.+.                +... ..-+|...  +..++| .|+  ++++++.|.+.++|+.+ ++.+..+..|. ..+
T Consensus       204 i~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~i  261 (967)
T KOG0974|consen  204 IDSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGI  261 (967)
T ss_pred             cccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhcce
Confidence            9987                3333 55678866  999997 666  99999999999999776 66666888876 568


Q ss_pred             eEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          167 NQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      ..++..+.....+|++.|+.+++|++.+
T Consensus       262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  262 WKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999988999999999999999754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=5.7e-11  Score=99.39  Aligned_cols=169  Identities=12%  Similarity=0.074  Sum_probs=107.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c-C
Q 023246            6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-D   81 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~-d   81 (285)
                      +...+|+||+..++++.+.+|  .|.+||+.+++..               .+ ..+...+....|+|+|+.|+.. . +
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~~  308 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQA  308 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCCC
Confidence            456899998744444555555  4888898876521               11 2223456789999999977654 3 3


Q ss_pred             Cc--EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---CeEEEEecCCCceE
Q 023246           82 EL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKLV  156 (285)
Q Consensus        82 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~~  156 (285)
                      +.  |+++++.++                 ....+......  .....| +|+|++++..+.+   ..|++||+.+++..
T Consensus       309 g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        309 GRPQVYKVNINGG-----------------APQRITWEGSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             CCceEEEEECCCC-----------------CeEEeecCCCC--ccCEEE-CCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            44  445565544                 22333333222  456775 9999998775543   45889999877643


Q ss_pred             EEEecccccceEeEEcCCCCeEEEEecCCc---EEEEcCCCCCCCCCCCCcccceeecc
Q 023246          157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPPLPDNAEKIMKANK  212 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~---i~iwd~~~~~~~~~~~~~~~~~~~~~  212 (285)
                       .+.. ........|+|+|++|+.++.++.   +.++++.+.....+..+...+....|
T Consensus       369 -~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~W  425 (429)
T PRK03629        369 -VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW  425 (429)
T ss_pred             -EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCccc
Confidence             3432 223456789999999998887764   67788877666666655555544433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=5.4e-11  Score=92.43  Aligned_cols=203  Identities=8%  Similarity=0.011  Sum_probs=137.7

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEEec-C--CcEEEEEcCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISYN-D--ELVYLFEKNMG   92 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s~~-d--~~i~iwd~~~~   92 (285)
                      ..|++|-.+|.+.+|....+....     .     .+..+  .-...+..+.-++.... +++|. .  ..+.+||+...
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hs-----s-----~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~  183 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHS-----S-----KLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS  183 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCcccc-----c-----cceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence            477888899999999998664210     0     00111  11234556666666554 44454 5  78999999864


Q ss_pred             CCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCC-ceEEEEecccccceEe
Q 023246           93 LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQL  169 (285)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~~  169 (285)
                      .    ..++...+++-     .-+-.-+..++++.| -+.  ...|++++.-+.|++||.+.+ +++..+..-..+++++
T Consensus       184 ~----qiw~aKNvpnD-----~L~LrVPvW~tdi~F-l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~  253 (412)
T KOG3881|consen  184 K----QIWSAKNVPND-----RLGLRVPVWITDIRF-LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST  253 (412)
T ss_pred             e----eeeeccCCCCc-----cccceeeeeecccee-cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence            1    00000001000     001112233677887 444  678999999999999998864 4678887778899999


Q ss_pred             EEcCCCCeEEEEecCCcEEEEcCCCCCC--CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246          170 EPHPHIPMFATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       170 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                      ...|.++.+.+|..-+.+..+|++.+++  ..+.+..+.+..+. +.+..+++++++-|+.++|+|+++.+.+..
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih-~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH-CHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE-EcCCCceEEeeccceeEEEeecccchhhhh
Confidence            9999999999999999999999999885  23555555554443 344556899999999999999999765543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.9e-10  Score=96.56  Aligned_cols=176  Identities=12%  Similarity=0.093  Sum_probs=109.5

Q ss_pred             CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCC
Q 023246           26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLS  101 (285)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~  101 (285)
                      ..|.+||.....               +..+ ..+...+...+|+|+|+.|+..+    ...|++||+.++         
T Consensus       184 ~~l~i~D~~g~~---------------~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g---------  238 (433)
T PRK04922        184 YALQVADSDGYN---------------PQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG---------  238 (433)
T ss_pred             EEEEEECCCCCC---------------ceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---------
Confidence            358888876432               2222 34566789999999999777642    346999999766         


Q ss_pred             CccccCCCCceEeecccCceeeeeEEEecCCCcEEE-EecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeE
Q 023246          102 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF  178 (285)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  178 (285)
                              ....+......  .....| +|+|+.++ +.+.+|  .|++||+.+++. ..+..+.......+|+|+++.|
T Consensus       239 --------~~~~l~~~~g~--~~~~~~-SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l  306 (433)
T PRK04922        239 --------QRELVASFRGI--NGAPSF-SPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSI  306 (433)
T ss_pred             --------CEEEeccCCCC--ccCceE-CCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEE
Confidence                    22233333322  446775 99998775 444444  699999987764 3455555556788999999988


Q ss_pred             EEEec-CCc--EEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC---CeEEEEEeccccc
Q 023246          179 ATCGI-EKT--VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQT  239 (285)
Q Consensus       179 ~t~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~i~vwd~~~~~~  239 (285)
                      +..+. ++.  |.++++.++....+........... ++++++.++..+.+   ..|.+||+.+++.
T Consensus       307 ~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~-~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        307 YFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARAS-VSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             EEEECCCCCceEEEEECCCCCeEEeecCCCCccCEE-ECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence            77663 444  6666776665433322221222222 34555555544333   3689999876543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=6.6e-10  Score=93.11  Aligned_cols=159  Identities=12%  Similarity=0.078  Sum_probs=98.0

Q ss_pred             CCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           59 KNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      .+...+.+.+|+|+|+.|+..+    ...|++||+.++                +. ..+......  +....| +|+++
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g----------------~~-~~l~~~~g~--~~~~~~-SPDG~  252 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG----------------RR-RVVANFKGS--NSAPAW-SPDGR  252 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC----------------CE-EEeecCCCC--ccceEE-CCCCC
Confidence            4566788999999999777642    346999999876                22 333333322  556775 99998


Q ss_pred             EEE-EecCCCeEEEE--ecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CCcEEEEcC--CCCCCCCCCCCcccce
Q 023246          135 YVM-SGSDCGHLFIW--KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAP--MPTDFPPLPDNAEKIM  208 (285)
Q Consensus       135 ~l~-~~~~dg~v~vw--d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~  208 (285)
                      .++ +.+.+|...+|  |+..++ +..+..+........|+|+|+.|+..+. ++...+|.+  .++....+........
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~  331 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT  331 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC
Confidence            876 56777765555  555443 4555555556677899999998776653 456666654  4444322221111111


Q ss_pred             eeccccCCCceEEEeCCCC---eEEEEEeccccc
Q 023246          209 KANKQGREDHSRITLTPDV---IMHVLRLQRRQT  239 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~---~i~vwd~~~~~~  239 (285)
                      ... ++++++.++..+.++   .|++||+.+++.
T Consensus       332 ~~~-~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        332 SPR-ISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             ceE-ECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            222 345566665544443   699999877643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.2e-09  Score=91.98  Aligned_cols=159  Identities=12%  Similarity=0.021  Sum_probs=96.6

Q ss_pred             cceeEEEEcCCCCcEEEEee-CCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            4 IRLNAIVIDPRNPNYFAVGG-SDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      ..+.+..|+||+ ..|+..+ .++  .|.+||+.+++..            ...    ...+.....+|+|+|+.|+. .
T Consensus       218 ~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~------------~lt----~~~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        218 EPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVRE------------KVT----SFPGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             CcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeE------------Eec----CCCCCcCCeeECCCCCEEEEEE
Confidence            356788999987 5555544 333  4778888776521            011    11122346799999997664 3


Q ss_pred             -cCCc--EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-C--CeEEEEecCCC
Q 023246           80 -NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKGG  153 (285)
Q Consensus        80 -~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~vwd~~~~  153 (285)
                       .++.  |+++|+.++                 ....+..+...  .....| +|+++.++..+. +  ..|+++|+.++
T Consensus       281 ~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        281 SKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             eCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence             3554  777888765                 23334433322  556775 999998866543 3  35777788877


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPL  200 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~  200 (285)
                      +... +..+.......+|+|++++++..+. ++  .|.++|+.++....+
T Consensus       341 ~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l  389 (448)
T PRK04792        341 KVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL  389 (448)
T ss_pred             CEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc
Confidence            6543 2222223445789999999776654 34  455567777654333

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=4.2e-11  Score=91.73  Aligned_cols=224  Identities=15%  Similarity=0.157  Sum_probs=143.2

Q ss_pred             cceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccC-Cc--------------------CCCCCcccccccccCCCCC
Q 023246            4 IRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYS-PI--------------------SSDTPVDTFCPRHLIGKNN   61 (285)
Q Consensus         4 ~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~-~~--------------------~~~~~~~~~~~~~~~~~h~   61 (285)
                      .+|+.+.|.++ +...++..+.|.+|++|-+....... .+                    ..+..+...+.+....+|+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            36788899775 44578888999999999987543211 00                    0011112223445557899


Q ss_pred             cceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           62 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      ..|.+|.++.|++.+.++.|-.|.+|++....    .++.+-++++.    .+..-..  .|++..|+....+.++-.+.
T Consensus       165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d----~sFnIVDIKP~----nmEeLte--VITsaEFhp~~cn~f~YSSS  234 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSADDLRINLWNLEIID----QSFNIVDIKPA----NMEELTE--VITSAEFHPHHCNVFVYSSS  234 (433)
T ss_pred             eEeeeeeecCccceEeeccceeeeeccccccC----CceeEEEcccc----CHHHHHH--HHhhhccCHhHccEEEEecC
Confidence            99999999999999999999999999997542    11111111111    0111111  27788884445677888888


Q ss_pred             CCeEEEEecCCCceE------EEE----------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCC--CCCCCCCCCC
Q 023246          142 CGHLFIWKKKGGKLV------RLM----------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPDN  203 (285)
Q Consensus       142 dg~v~vwd~~~~~~~------~~~----------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~~  203 (285)
                      .|+|++.|++...+.      ...          ..--..|..+.|+++|+++++-.. -+|++||+.  .+.+.+.+.|
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            999999999854321      111          111246888999999999987753 589999984  3333333322


Q ss_pred             c------------ccce---eeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          204 A------------EKIM---KANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       204 ~------------~~~~---~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      .            ..++   ... ++.++.++++|+.....+++++.++..
T Consensus       314 ~~lr~kLc~lYEnD~IfdKFec~-~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  314 EYLRSKLCSLYENDAIFDKFECS-WSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HhHHHHHHHHhhccchhheeEEE-EcCCcceEecccccceEEEecCCCCcc
Confidence            2            1111   111 233455889999999999999766543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=9.3e-11  Score=93.68  Aligned_cols=245  Identities=10%  Similarity=0.089  Sum_probs=159.3

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccc------------------------------
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF------------------------------   51 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------------------------   51 (285)
                      +.+-|+.+.|+..| ..|++|+.|..|.+||...+.....+........|                              
T Consensus       141 H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            45789999999986 89999999999999998776543332211100000                              


Q ss_pred             --cc-cccCCCCCcceEEEEEecCCC-EEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccC-cee
Q 023246           52 --CP-RHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRN-SQT  122 (285)
Q Consensus        52 --~~-~~~~~~h~~~v~~i~~s~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~  122 (285)
                        +. ...+..|.++|..++.-|+.. -|.+ |.|+.+.-+|++...                ....+.   .+.. ...
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~----------------pa~~~~cr~~~~~~~v~  283 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV----------------PAEKFVCREADEKERVG  283 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC----------------ccceeeeeccCCcccee
Confidence              00 112246888899999888774 3444 679999989987662                212221   1111 123


Q ss_pred             eeeEEEecCCC-cEEEEecCCCeEEEEecCCCc------eEEEEec------ccccceEeEEcCCCCeEEEEecCCcEEE
Q 023246          123 VKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK------LVRLMVG------DRHVVNQLEPHPHIPMFATCGIEKTVKL  189 (285)
Q Consensus       123 i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~------~~~~~~~------h~~~v~~~~~~p~~~~l~t~~~d~~i~i  189 (285)
                      ...++. +|.. .++++++.|-.+++||.+.-.      .+..+..      ..-.|++++++.++.-++++-.|-.|++
T Consensus       284 L~~Ia~-~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  284 LYTIAV-DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeEec-CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            677886 6654 488999999999999976422      1233322      1246899999988777777777889999


Q ss_pred             EcCCCC-------------CCCC-CCCCc--ccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE----------
Q 023246          190 WAPMPT-------------DFPP-LPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------  243 (285)
Q Consensus       190 wd~~~~-------------~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~----------  243 (285)
                      +...-+             .... +++|.  ..+...+.+.+...++++||.-|.|.+|+-.+.+.+..+          
T Consensus       363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL  442 (559)
T KOG1334|consen  363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL  442 (559)
T ss_pred             eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence            964311             1122 45554  336677777777889999999999999998877666554          


Q ss_pred             eeeccccccCCCCCcCeEEEe
Q 023246          244 ERRYNAADFESDEEEGETYLL  264 (285)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~  264 (285)
                      +.-|-...|++..-+-.|-++
T Consensus       443 EpHP~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  443 EPHPHLPVLASSGIDHDVKIW  463 (559)
T ss_pred             CCCCCCchhhccCCccceeee
Confidence            333444455555444445444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.9e-09  Score=90.71  Aligned_cols=159  Identities=11%  Similarity=0.007  Sum_probs=100.4

Q ss_pred             cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      ..+...+|+|++ ..|+..+.+   ..|.+||+.+++...               + ....+.+....|+|+|+.|+. .
T Consensus       199 ~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~---------------l-~~~~g~~~~~~~SpDG~~la~~~  261 (430)
T PRK00178        199 EPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ---------------I-TNFEGLNGAPAWSPDGSKLAFVL  261 (430)
T ss_pred             CceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE---------------c-cCCCCCcCCeEECCCCCEEEEEE
Confidence            457788999987 666555433   358888998775211               1 111233456899999987764 3


Q ss_pred             c-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-C--CeEEEEecCCC
Q 023246           80 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKKGG  153 (285)
Q Consensus        80 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~v~vwd~~~~  153 (285)
                      . ++  .|++||+.++                 ....+..+...  .....| +|+++.++..+. +  ..|+++++.++
T Consensus       262 ~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        262 SKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             ccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECCCC
Confidence            2 43  6888898775                 23334433322  455665 999988766553 3  36888888877


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecC-C--cEEEEcCCCCCCCCC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPL  200 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~  200 (285)
                      +... +...........|+|++++++..+.+ +  .|.+||+.++....+
T Consensus       322 ~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l  370 (430)
T PRK00178        322 RAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL  370 (430)
T ss_pred             CEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence            6433 22122234457899999998776643 3  578889887764433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.3e-09  Score=89.58  Aligned_cols=201  Identities=11%  Similarity=0.029  Sum_probs=112.1

Q ss_pred             ceeEEEEcCCCCc--EEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246            5 RLNAIVIDPRNPN--YFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~--~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      .+.+-+|+||+..  ++++...+|  .|.+.++.+++..            .+    ....+.....+|||||+.|+...
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~------------~l----t~~~g~~~~p~wSPDG~~Laf~s  249 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK------------KI----LALQGNQLMPTFSPRKKLLAFIS  249 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce------------Ee----ecCCCCccceEECCCCCEEEEEE
Confidence            4456689998744  333554444  4666677766421            11    11233345689999998776532


Q ss_pred             --CC--c--EEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEec-CCCe--EEEEec
Q 023246           81 --DE--L--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS-DCGH--LFIWKK  150 (285)
Q Consensus        81 --d~--~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~--v~vwd~  150 (285)
                        +|  .  +.+|++..+.              ......+. .....  ....+| +|+|+.|+..+ .+|.  |+++++
T Consensus       250 ~~~g~~di~~~~~~~~~g~--------------~g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        250 DRYGNPDLFIQSFSLETGA--------------IGKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             CCCCCcceeEEEeecccCC--------------CCcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEEC
Confidence              23  2  3346655420              01122222 22111  355675 99999877655 4564  555555


Q ss_pred             CC-CceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEE-EeCC
Q 023246          151 KG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRI-TLTP  225 (285)
Q Consensus       151 ~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~  225 (285)
                      .. +.....+..+...+....|+|+|++|+..+.+   ..|.+||+.+++...+...........| .++++.++ +...
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~w-SpDG~~L~f~~~~  391 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSW-AIDSLHLVYSAGN  391 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEE-CCCCCEEEEEECC
Confidence            42 23344455445567789999999998776543   3689999988876554432222223333 34444443 3333


Q ss_pred             --CCeEEEEEeccccc
Q 023246          226 --DVIMHVLRLQRRQT  239 (285)
Q Consensus       226 --d~~i~vwd~~~~~~  239 (285)
                        ...|+++|+..++.
T Consensus       392 ~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        392 SNESELYLISLITKKT  407 (428)
T ss_pred             CCCceEEEEECCCCCE
Confidence              35677778766543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.27  E-value=3.4e-09  Score=88.94  Aligned_cols=157  Identities=11%  Similarity=0.094  Sum_probs=100.0

Q ss_pred             CCCcceEEEEEecCCCEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           59 KNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      .+...+...+|+|+|++|+...    ...|++||+.++                 ....+..+...  +..++| +|+++
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-----------------~~~~~~~~~~~--~~~~~~-spDg~  246 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-----------------QREKVASFPGM--NGAPAF-SPDGS  246 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-----------------CEEEeecCCCC--ccceEE-CCCCC
Confidence            4555788899999999877642    257999999876                 22233333332  556775 99998


Q ss_pred             EEE-EecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC-C--cEEEEcCCCCCCCCCCCCcccce
Q 023246          135 YVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIM  208 (285)
Q Consensus       135 ~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~  208 (285)
                      .|+ +.+.++  .|++||+.+++. ..+..+........|+|++++|+..+.. +  .|.++++.+++...+..+.....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~  325 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA  325 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence            775 444444  588999987654 3444455555678999999987766543 3  57788887766443332222222


Q ss_pred             eeccccCCCceEEEeCCCC---eEEEEEeccc
Q 023246          209 KANKQGREDHSRITLTPDV---IMHVLRLQRR  237 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~---~i~vwd~~~~  237 (285)
                      ...+ .+++++++..+.++   .|.+||+.++
T Consensus       326 ~~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       326 SPSW-SPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CeEE-CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            2322 44555665555554   7888888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.25  E-value=3.4e-11  Score=100.87  Aligned_cols=203  Identities=15%  Similarity=0.208  Sum_probs=143.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~d   81 (285)
                      ...|+.+.|+|+++..+++++.|-.|..||+++...        ++..+      ..-......++|+- ++..+|++..
T Consensus       114 sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------p~ys~------~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  114 SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------PFYST------SSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             ccceeccccCCCCCcceeeccccccceeeeccCCCc--------ceeee------ecccccCceeeecccCcchhhhccC
Confidence            346889999999999999999999999999997651        22222      22233456788886 4567888889


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce--EEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~  159 (285)
                      +.|.+||.+.+.               ..+..+++|...  ++.+.|.......+.+.+.||+|+.||......  -+..
T Consensus       180 ~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v  242 (1081)
T KOG0309|consen  180 NDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV  242 (1081)
T ss_pred             CceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence            999999998773               567788887765  888887444556788999999999999875432  2222


Q ss_pred             ecccccceEeEEcCCCCe--EEEEecCCcEEEEcCC---------CC--CCCCCCCCcccceeeccccCC---------C
Q 023246          160 VGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAPM---------PT--DFPPLPDNAEKIMKANKQGRE---------D  217 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~---------~~--~~~~~~~~~~~~~~~~~~~~~---------~  217 (285)
                      . ...+|..-.+-|-|.-  +.-.-.+..+.+++.+         ..  .+.++.+|...++...|+...         +
T Consensus       243 t-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd  321 (1081)
T KOG0309|consen  243 T-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD  321 (1081)
T ss_pred             c-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence            2 3456666666665543  2222222344444332         22  357788999999888887652         2


Q ss_pred             ceEEEeCCCCeEEEEEeccc
Q 023246          218 HSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ..+++.|.|-.+++|.+...
T Consensus       322 fQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  322 FQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             eeEEEeecCCceEeeeccHH
Confidence            37899999999999998653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.23  E-value=9.6e-10  Score=84.42  Aligned_cols=201  Identities=17%  Similarity=0.208  Sum_probs=132.9

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEcc-CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      |++...-|. .+-+++.+.|.++|||--+ .++..              +.+...-..+++++.+.++...|..+. .|+
T Consensus        27 vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~w--------------psI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   27 VNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYW--------------PSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             hhhheeccC-CCCeEEccccceeeeEEeccccccC--------------chhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            444444553 3678899999999999644 34421              112123456889999999998888875 888


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC--------------------
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG--------------------  143 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--------------------  143 (285)
                      +.-+.+...            ..+...++.+..|...  +..+-| +...+.+++.+.|.                    
T Consensus        92 vtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~  156 (404)
T KOG1409|consen   92 VTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET  156 (404)
T ss_pred             EEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCcccceEeec
Confidence            888877543            2222334444455544  555554 44444444444433                    


Q ss_pred             -------------------eEEEEec--CCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCC
Q 023246          144 -------------------HLFIWKK--KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPL  200 (285)
Q Consensus       144 -------------------~v~vwd~--~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~  200 (285)
                                         .|....+  ....++.++.+|.+.+.+++|.|....|.+|..|..+.+||+-..+  ...+
T Consensus       157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el  236 (404)
T KOG1409|consen  157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL  236 (404)
T ss_pred             cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence                               2222221  1233466778999999999999999999999999999999986554  4556


Q ss_pred             CCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          201 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      .+|...+..+.. ..-.+.+++...||.|-+|++...
T Consensus       237 ~gh~~kV~~l~~-~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  237 QGHNDKVQALSY-AQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ccchhhhhhhhh-hhhheeeeeccCCCeEEEEeccce
Confidence            667666644432 223446889999999999998764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.21  E-value=7.4e-10  Score=90.33  Aligned_cols=223  Identities=11%  Similarity=0.055  Sum_probs=125.9

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--CCcEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DELVY   85 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--d~~i~   85 (285)
                      .+.|+||+ +++++.+.||.|.++|+.+.+.+.              .+..  ......+++|++|+++++++  ++.+.
T Consensus        41 ~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~--------------~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   41 GLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA--------------TIKV--GGNPRGIAVSPDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             EEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE--------------EEE---SSEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred             EEEecCCC-CEEEEEcCCCeEEEEECCcccEEE--------------EEec--CCCcceEEEcCCCCEEEEEecCCCcee
Confidence            46789986 788888999999999999987432              2211  23467899999999888753  99999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccC-----ceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceEE-E
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR-L  158 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~-~  158 (285)
                      ++|..+.                +.++.+.....     ...+.++.. ++... ++++--+.+.|.+.|....+.+. .
T Consensus       104 v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen  104 VIDAETL----------------EPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             EEETTT------------------EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             Eeccccc----------------cceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            9999887                56666654321     113666664 66666 55566667999999987655442 2


Q ss_pred             EecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCCC-----CCcccce-------eeccccC-CCceEEEeC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLP-----DNAEKIM-------KANKQGR-EDHSRITLT  224 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~-----~~~~~~~-------~~~~~~~-~~~~~~~~s  224 (285)
                      ............|+|++++++.+ ..+..|-++|...+++....     .|..+..       ...|... .....++.-
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i  246 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI  246 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence            22234567789999999996554 56678999998876532211     1111111       0111111 111222333


Q ss_pred             CCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEEe
Q 023246          225 PDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLL  264 (285)
Q Consensus       225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  264 (285)
                      ....+.+||....+.+..+.....+..+..+++...+|+-
T Consensus       247 g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd  286 (369)
T PF02239_consen  247 GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD  286 (369)
T ss_dssp             E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred             cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence            3345556777777777776655444444556655555553

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.6e-08  Score=85.19  Aligned_cols=158  Identities=7%  Similarity=0.004  Sum_probs=97.0

Q ss_pred             CCCcceEEEEEecCCCEEEE-ec---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           59 KNNIHITGLAYSNTSELLIS-YN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      .+...+....|+|+|+.|+. +.   ...|.+|++.++                 ....+......  +....| +|+|+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-----------------~~~~l~~~~g~--~~~~~~-SpDG~  255 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-----------------RREQITNFEGL--NGAPAW-SPDGS  255 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-----------------CEEEccCCCCC--cCCeEE-CCCCC
Confidence            45667889999999997765 32   246899999776                 22223222222  445775 99998


Q ss_pred             EEE-EecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccce
Q 023246          135 YVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIM  208 (285)
Q Consensus       135 ~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~  208 (285)
                      .++ +.+.+|  .|++||+.+++.. .+..+........|+|+++.++..+. ++  .|.++++.++....+........
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~  334 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA  334 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence            876 444444  6888999877654 45555556677899999998766553 33  57777887766433321111111


Q ss_pred             eeccccCCCceEEEeC-CCC--eEEEEEecccc
Q 023246          209 KANKQGREDHSRITLT-PDV--IMHVLRLQRRQ  238 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s-~d~--~i~vwd~~~~~  238 (285)
                      .. .++++++.++..+ .++  .|.++|+.+++
T Consensus       335 ~~-~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        335 RP-RLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             ce-EECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            11 2344445544433 333  57888887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.21  E-value=6.5e-10  Score=86.89  Aligned_cols=165  Identities=8%  Similarity=0.038  Sum_probs=108.4

Q ss_pred             ceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           63 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      ....+..++.++++|.+. +....+++.....            +..+.+..+.....+..+..+.. +.........++
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~------------~~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD  130 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENP------------KGAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGD  130 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCC------------CcceeeeEeecccCcceeeeeec-cceEEEEeecCC
Confidence            344566788889999864 7777788877652            01233444443333322333332 222223333455


Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCC-CCcccceeeccccCCCce
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLP-DNAEKIMKANKQGREDHS  219 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  219 (285)
                      ...+.+|....+ +...+.+|-+.+..++|+||+++++++..|..|++-..... .+..+. +|..-+-.+.  -.++..
T Consensus       131 ~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is--l~~~~~  207 (390)
T KOG3914|consen  131 VYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS--LTDNYL  207 (390)
T ss_pred             ceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee--eccCce
Confidence            566666666654 34455689999999999999999999999999999665443 344443 4666554442  234556


Q ss_pred             EEEeCCCCeEEEEEecccccceeE
Q 023246          220 RITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      +++++.|+++++||+.+++.+..+
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             eeecCCCCcEEEEecccCCccccc
Confidence            899999999999999999887665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=1.7e-09  Score=83.11  Aligned_cols=183  Identities=16%  Similarity=0.198  Sum_probs=111.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc----ccc-ccccCCCCCcceEEEEEecCCC---EE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD----TFC-PRHLIGKNNIHITGLAYSNTSE---LL   76 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~-~~~~~~~h~~~v~~i~~s~~~~---~l   76 (285)
                      -|.++.|...| ++||||..+|.|.++.-...... .+......+    .|. +..  -.-...|..+.|.+++.   +|
T Consensus        27 iis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkS--leieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   27 IISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKS--LEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             ceeeEEeeccc-ceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhh--hhhhhhhhhceecCCCCccEEE
Confidence            46789999976 99999999999999975432210 000000000    000 000  01245788999999875   77


Q ss_pred             EEecCCcEEEEEcCCCCCCCC-------------CCCCCccccCC------CCceEee-cccCceeeeeEEEecCCCcEE
Q 023246           77 ISYNDELVYLFEKNMGLGPSP-------------LSLSPEDLQKR------EEPQVYS-GHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        77 ~s~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~~-~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      ++++|.+|++|-+........             .+++...+.+.      .+.+.+. .|.  -.|+++.+ +.+.+.+
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt--yhiNSIS~-NsD~Et~  179 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT--YHINSISV-NSDKETF  179 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce--eEeeeeee-cCccceE
Confidence            778999999999875531110             00000001111      1111111 344  34899997 7888888


Q ss_pred             EEecCCCeEEEEecCCCce---EEEEecc-----cccceEeEEcCC-CCeEEEEecCCcEEEEcCCCC
Q 023246          137 MSGSDCGHLFIWKKKGGKL---VRLMVGD-----RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      +++. |=.|.+|+++-...   +-.++.+     ..-|++..|+|. .++|+-.+..|+|++.|++..
T Consensus       180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence            7755 78899999874332   2223333     245889999995 455888888999999999854

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.20  E-value=1.3e-10  Score=88.72  Aligned_cols=184  Identities=16%  Similarity=0.164  Sum_probs=116.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-CC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d~   82 (285)
                      +|.-+.|..+...+|.....|+.|.+|++...+....+               ..-..++.+++|||+|+ +|.+++ +-
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI---------------deg~agls~~~WSPdgrhiL~tseF~l  114 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI---------------DEGQAGLSSISWSPDGRHILLTSEFDL  114 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe---------------ccCCCcceeeeECCCcceEeeeeccee
Confidence            34557788876566777788999999999876532211               34466889999999996 444555 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec---CCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK---KGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~---~~~~~~~~~  159 (285)
                      .|.+|.+.+.                 ....++..+..  +..++| +++|++.+..+.-...-.+.+   ..-..+..+
T Consensus       115 riTVWSL~t~-----------------~~~~~~~pK~~--~kg~~f-~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f  174 (447)
T KOG4497|consen  115 RITVWSLNTQ-----------------KGYLLPHPKTN--VKGYAF-HPDGQFCAILSRRDCKDYVQISSCKAWILLKEF  174 (447)
T ss_pred             EEEEEEeccc-----------------eeEEecccccC--ceeEEE-CCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence            9999999875                 22333333333  788998 999999988775322111222   122345555


Q ss_pred             ecccccceEeEEcCCCCeEEEEec--CCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ...+-..+.+.|+|||..++.-..  +..|..|.            .+--+....+++.++++..|+.|+.+++.+--
T Consensus       175 ~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  175 KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             CCCcccccCceECCCCcEEEEecchhhheeeeee------------eccceeEEEeccccceEEeeccchhhhhhcee
Confidence            555667788899999887664321  12222221            11112222335556788889999888887643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=1.9e-10  Score=93.66  Aligned_cols=193  Identities=10%  Similarity=0.128  Sum_probs=129.1

Q ss_pred             CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc-cccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCC
Q 023246           15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD-TFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGL   93 (285)
Q Consensus        15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~   93 (285)
                      +.+-+++++.|++|++|.++..-        ..+. +.|..+. ..|+.+|.++.|-.+-++++++ |+-|++||.-.+ 
T Consensus       746 NENSFiSASkDKTVKLWSik~Eg--------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFig-  814 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEG--------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIG-  814 (1034)
T ss_pred             cccceeeccCCceEEEEEecccc--------CccccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeeccccc-
Confidence            45789999999999999997431        0111 1133333 7899999999999987777654 677999998665 


Q ss_pred             CCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEe-cCCCeEEEEecCCCceEEEEe-----cccc
Q 023246           94 GPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMV-----GDRH  164 (285)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~-----~h~~  164 (285)
                                     +.+..+.   .+.....|.++.  +-+...++.| +...+|+++|.+.++....++     +.+.
T Consensus       815 ---------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  815 ---------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA  877 (1034)
T ss_pred             ---------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence                           3333221   222222255553  3344555444 789999999999888766554     3456


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEE-EEeccc
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV-LRLQRR  237 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v-wd~~~~  237 (285)
                      .+.+++..|.|++++.+-..|+|.+.|.+++++ ..+.........+.  .+.+..++....|.++.+ |-.-.+
T Consensus       878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcCC
Confidence            789999999999999999999999999999984 44544333333332  223334555555666666 654433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=2.9e-09  Score=87.13  Aligned_cols=145  Identities=10%  Similarity=0.144  Sum_probs=118.4

Q ss_pred             CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCC
Q 023246           16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG   94 (285)
Q Consensus        16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~   94 (285)
                      ...++-|...|.|.+|++..++.             ........|.+.|.++.++.+-..|.+ +.|..+..|+....  
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~i-------------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--  134 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEI-------------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--  134 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeE-------------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--
Confidence            36888899999999999998874             222233689999999999988877877 56999999999887  


Q ss_pred             CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH  174 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  174 (285)
                                    .....+...+..  +.++++ +|++..+++++  +.|++||+++++.+..|.+|.++|.++.|--.
T Consensus       135 --------------~~~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  135 --------------VIIRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             --------------eeeeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence                          567777766644  889997 99999999887  78999999999999999999999999999776


Q ss_pred             -----CCeEEE-EecCCcEEEEcCCC
Q 023246          175 -----IPMFAT-CGIEKTVKLWAPMP  194 (285)
Q Consensus       175 -----~~~l~t-~~~d~~i~iwd~~~  194 (285)
                           |.++++ ...+.-+.+|-...
T Consensus       196 ~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  196 IDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ccccccceeeeccccccceeEEEEEc
Confidence                 667554 44566677886643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.17  E-value=3.9e-09  Score=93.36  Aligned_cols=178  Identities=13%  Similarity=0.050  Sum_probs=115.9

Q ss_pred             ccccCCCCCcceEEEEEecCC-CEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec
Q 023246           53 PRHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  130 (285)
Q Consensus        53 ~~~~~~~h~~~v~~i~~s~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  130 (285)
                      +.++ ..|...+..++.++.. .+|++|+ ||+|++|+...-.+..         ...+...++....  ..+.++.+ .
T Consensus      1041 VAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------~s~rS~ltys~~~--sr~~~vt~-~ 1107 (1431)
T KOG1240|consen 1041 VAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------GSARSELTYSPEG--SRVEKVTM-C 1107 (1431)
T ss_pred             eehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------ceeeeeEEEeccC--CceEEEEe-c
Confidence            3444 6788888899888766 7999965 9999999997652110         0112222333223  33777876 7


Q ss_pred             CCCcEEEEecCCCeEEEEecCCC--ce-----EE----------------------------------------------
Q 023246          131 PNDEYVMSGSDCGHLFIWKKKGG--KL-----VR----------------------------------------------  157 (285)
Q Consensus       131 ~~~~~l~~~~~dg~v~vwd~~~~--~~-----~~----------------------------------------------  157 (285)
                      +.+..+|.++.||.|.+.++...  +.     .+                                              
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            88999999999999999987641  00     00                                              


Q ss_pred             --EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC-CCcccceeeccccCCC--c-eEEEeC-CCCeE
Q 023246          158 --LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQGRED--H-SRITLT-PDVIM  229 (285)
Q Consensus       158 --~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~-~~~~~s-~d~~i  229 (285)
                        ......+.|++++.+|.+.++++|...|.+-+||++-+.+ ..+. .+..++..+..+....  . .+.+++ ..+.|
T Consensus      1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence              0001136799999999999999999999999999987653 2222 1223333333232222  3 334444 57999


Q ss_pred             EEEEecccccceeE
Q 023246          230 HVLRLQRRQTLAYR  243 (285)
Q Consensus       230 ~vwd~~~~~~~~~~  243 (285)
                      .+|++.++.....+
T Consensus      1268 s~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVL 1281 (1431)
T ss_pred             eeeecccCcceEEE
Confidence            99999988554444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.15  E-value=3.7e-08  Score=73.51  Aligned_cols=209  Identities=10%  Similarity=-0.013  Sum_probs=128.7

Q ss_pred             EEEEcCC----CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEecC
Q 023246            8 AIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISYND   81 (285)
Q Consensus         8 ~~~~s~~----~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~~d   81 (285)
                      .+.|-|.    ...+||.|+..|...+|...+.+..             .+.. ..|...|+-+.=.-+  ...+.++.|
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h-------------~~~c-d~snn~v~~~~r~cd~~~~~~i~snd  137 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH-------------LYQC-DVSNNDVTLVKRYCDLKFPLNIASND  137 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccc-------------eeee-cccccchhhhhhhcccccceeeccCC
Confidence            3556551    2358999999999999999877521             1111 223332222211111  236666778


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ce-EE-E
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KL-VR-L  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~-~~-~  158 (285)
                      .+++++++...                ...  +..|.....+.++++ +++++++++.++...|..|.+... +. +. .
T Consensus       138 ht~k~~~~~~~----------------s~~--~~~h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~  198 (344)
T KOG4532|consen  138 HTGKTMVVSGD----------------SNK--FAVHNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIY  198 (344)
T ss_pred             cceeEEEEecC----------------ccc--ceeeccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeE
Confidence            89998888755                111  122322223778887 999999999999999999987643 32 23 1


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCC--CceEEEeCCCCeEEE
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHV  231 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~s~d~~i~v  231 (285)
                      .......-.+..|+.....+|++..||++.|||++....     .....+....+........  ..+++-.-.-+.+++
T Consensus       199 ~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv  278 (344)
T KOG4532|consen  199 EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV  278 (344)
T ss_pred             ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence            223344556788999999999999999999999976532     1122233333333222322  223443344588999


Q ss_pred             EEecccccceeEeeeccc
Q 023246          232 LRLQRRQTLAYRERRYNA  249 (285)
Q Consensus       232 wd~~~~~~~~~~~~~~~~  249 (285)
                      .|+++....+.+...++.
T Consensus       279 ~D~R~~~~~q~I~i~~d~  296 (344)
T KOG4532|consen  279 VDTRNYVNHQVIVIPDDV  296 (344)
T ss_pred             EEcccCceeeEEecCccc
Confidence            999988766666444433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.14  E-value=1.7e-08  Score=82.41  Aligned_cols=192  Identities=13%  Similarity=0.121  Sum_probs=118.2

Q ss_pred             cEE-EEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCC
Q 023246           17 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLG   94 (285)
Q Consensus        17 ~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~   94 (285)
                      +++ ++-..++.|.+.|..+.+.+              ..+ ......-..+.|+|||+++.. +.|+.|.++|+.+.  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~--------------~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--   68 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVV--------------ARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--   68 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEE--------------EEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred             cEEEEEecCCCEEEEEECCCCeEE--------------EEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence            455 45567899999999988732              222 211222345789999997776 45999999999988  


Q ss_pred             CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEEEEecc-------cccc
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV  166 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~h-------~~~v  166 (285)
                                    +.+.+++....   ..++++ +++|++++++. ..+.+.++|.++.+++..+...       ...+
T Consensus        69 --------------~~v~~i~~G~~---~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv  130 (369)
T PF02239_consen   69 --------------KVVATIKVGGN---PRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV  130 (369)
T ss_dssp             --------------SEEEEEE-SSE---EEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred             --------------cEEEEEecCCC---cceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence                          67777765443   677887 99999998765 6899999999999999887643       2456


Q ss_pred             eEeEEcCCCCeEEEEec-CCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceE-EEeCCCCeEEEEEecccccceeE
Q 023246          167 NQLEPHPHIPMFATCGI-EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~~-d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .++..+|....++..-. -+.|.+-|....+..... ........-....++.+++ ++...+..|-++|..+++....+
T Consensus       131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            77888888886655544 478888787654321100 0111111112224445554 55566789999998887666554

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=1.2e-09  Score=80.88  Aligned_cols=204  Identities=15%  Similarity=0.202  Sum_probs=117.0

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec------CCcEEEEEcC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------DELVYLFEKN   90 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~------d~~i~iwd~~   90 (285)
                      +.++++..||.+.+.+.+.-.              ............-.+.+....++++.++.      -+..+.|+++
T Consensus       102 t~V~~~~~dg~~~v~s~~~~~--------------~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDKDL--------------ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             CceEecCCCceEEEEechHHH--------------hhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc
Confidence            688999999999999987521              00000011011112233344555555532      3445666664


Q ss_pred             CCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCc-eEEEEecccccce
Q 023246           91 MGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVN  167 (285)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~  167 (285)
                      ..                   .++. .+.....+.+++- +|. .+.+++|++||.+-+||.+... +...++.|+.++.
T Consensus       168 p~-------------------~t~~~~~~~~~~v~~l~~-hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~  227 (319)
T KOG4714|consen  168 PI-------------------KTLIPSKKALDAVTALCS-HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW  227 (319)
T ss_pred             cc-------------------ccccccccccccchhhhC-CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence            32                   2211 1222223777775 554 5567889999999999998765 3456678999999


Q ss_pred             EeEEcCCCC-eEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC-CeEEEEEecccccceeEee
Q 023246          168 QLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRLQRRQTLAYRER  245 (285)
Q Consensus       168 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~i~vwd~~~~~~~~~~~~  245 (285)
                      .+-|+|... .|+++++||.+..||..+..+. .. ....+..         ..+++..- ..|.+=.+.....+..-.+
T Consensus       228 eV~FHpk~p~~Lft~sedGslw~wdas~~~l~-i~-~~~s~~s---------~WLsgD~v~s~i~i~~ll~~~~~Sinsf  296 (319)
T KOG4714|consen  228 EVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS-IS-NQASVIS---------SWLSGDPVKSRIEITSLLPSRSLSINSF  296 (319)
T ss_pred             heeccCCCchheeEecCCCcEEEEcCCCceEE-ec-Ccccccc---------ccccCCcccceEeeeccccccceeeeee
Confidence            999999654 5999999999999998763321 11 1111111         11222211 2233333333333333344


Q ss_pred             eccccccCCCCCcCeEEEee
Q 023246          246 RYNAADFESDEEEGETYLLG  265 (285)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~  265 (285)
                      ...+..+.++.+.+.+|++.
T Consensus       297 DV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  297 DVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             eccCceEEeccccceEEEec
Confidence            44466677777777788764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=1e-08  Score=85.69  Aligned_cols=163  Identities=9%  Similarity=0.079  Sum_probs=95.0

Q ss_pred             eEEEEcCCCCcEEEEeeCCC----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-
Q 023246            7 NAIVIDPRNPNYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-   80 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-   80 (285)
                      ...+|||||..++++...+|    .+.+|++..+...            ....+...+.......+|+|||+.|+. +. 
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~  301 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK  301 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEEECC
Confidence            45789999744444443333    3444666543100            111111222233456799999997665 32 


Q ss_pred             CCcEEEE--EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---CeEEEEecCCCce
Q 023246           81 DELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL  155 (285)
Q Consensus        81 d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~v~vwd~~~~~~  155 (285)
                      ++...+|  ++....               .....+......  +....| +|+|+.|+..+.+   ..|++||+.+++.
T Consensus       302 ~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        302 DGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            5654555  443210               122333333322  566775 9999988765542   4799999998876


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCCCCCC
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPL  200 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~  200 (285)
                      .. +......+....|+|++++|+....   ...|.++++.+++...+
T Consensus       364 ~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        364 YQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             EE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            43 3333345778999999998765432   34688888877765444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.11  E-value=2e-09  Score=84.16  Aligned_cols=156  Identities=14%  Similarity=0.247  Sum_probs=107.4

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEE---ecCC
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LIS---YNDE   82 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s---~~d~   82 (285)
                      ..+..+|. +.++|.+..+....++++......     .+.+..++.       ...-+++.|..+... ++.   |...
T Consensus        66 ~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~-----~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD~~  132 (390)
T KOG3914|consen   66 ALVLTSDS-GRLVAVATSSKQRAVFDYRENPKG-----AKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGDVY  132 (390)
T ss_pred             cccccCCC-ceEEEEEeCCCceEEEEEecCCCc-----ceeeeEeec-------ccCcceeeeeeccceEEEEeecCCce
Confidence            34556775 589999999999888888755310     011111111       123345555554442 333   2245


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE-ec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~  161 (285)
                      .+.+|....+                 ....+-+|-..  +.++++ +||+++++++..|..|++-.......+..+ .+
T Consensus       133 ~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~IesfclG  192 (390)
T KOG3914|consen  133 SFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFCLG  192 (390)
T ss_pred             eeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhccc
Confidence            5566665433                 33445578766  999997 999999999999999999888766666655 47


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      |...|..++.-++. .|+++|.|+++++||+++++
T Consensus       193 H~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  193 HKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             cHhheeeeeeccCc-eeeecCCCCcEEEEecccCC
Confidence            99999999987754 48999999999999998876

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=9.6e-08  Score=80.53  Aligned_cols=158  Identities=10%  Similarity=0.050  Sum_probs=93.9

Q ss_pred             CCCcceEEEEEecCCCEEEEe-c-C--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           59 KNNIHITGLAYSNTSELLISY-N-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s~-~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      .+...+....|+|+|+.|+.. . +  ..|++||+.++                +. ..+......  .....| +|+++
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg----------------~~-~~lt~~~g~--~~~~~w-SPDG~  274 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ----------------VR-EKVTSFPGI--NGAPRF-SPDGK  274 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC----------------Ce-EEecCCCCC--cCCeeE-CCCCC
Confidence            345678899999999977663 2 3  35888998765                22 222222221  345675 99999


Q ss_pred             EEEE-ecCCC--eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccce
Q 023246          135 YVMS-GSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIM  208 (285)
Q Consensus       135 ~l~~-~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~  208 (285)
                      .|+. .+.+|  .|+++|+.+++. ..+..+.......+|+|+++.++..+. ++  .|.++++.+++...+........
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~  353 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNL  353 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCc
Confidence            7764 45556  488889887764 344545556778899999998766553 34  46666777666433321111111


Q ss_pred             eeccccCCCceEEE-eCCCC--eEEEEEecccc
Q 023246          209 KANKQGREDHSRIT-LTPDV--IMHVLRLQRRQ  238 (285)
Q Consensus       209 ~~~~~~~~~~~~~~-~s~d~--~i~vwd~~~~~  238 (285)
                      ... ++++++.++. ...++  .|.++|+.+++
T Consensus       354 ~~~-~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        354 GGS-ITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             Cee-ECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            222 2445444443 33344  45556766553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.6e-08  Score=82.47  Aligned_cols=113  Identities=13%  Similarity=0.197  Sum_probs=87.4

Q ss_pred             CcceEEEEEecCCCEEEE--ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246           61 NIHITGLAYSNTSELLIS--YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  137 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s--~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  137 (285)
                      .++|.++.|+|+++-++.  |- -..+.|||++..                 .+..|.  .++  =+++-| +|.|++++
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~  327 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIIL  327 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEE
Confidence            679999999999986655  32 788999999653                 444443  332  445655 99999998


Q ss_pred             EecC---CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec------CCcEEEEcCCCCCC
Q 023246          138 SGSD---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF  197 (285)
Q Consensus       138 ~~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~  197 (285)
                      .++-   -|.|-+||+.+.+++..+..-.  -+-..|+|+|++|+|+..      |..++||+..+..+
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l  394 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL  394 (566)
T ss_pred             EeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence            8664   6889999999999998887643  445799999999998874      67899999987765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.06  E-value=1.9e-08  Score=75.90  Aligned_cols=117  Identities=14%  Similarity=0.118  Sum_probs=88.4

Q ss_pred             eEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246           64 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  142 (285)
Q Consensus        64 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  142 (285)
                      ..++.|++.+..++++ ++|.+.+-+....              ..+..+.++.|..+  .....|...+.+.+.+|++|
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD  187 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDD  187 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEeccee--------------eeeeccccccccee--eeeeecccCCCceEEecCCC
Confidence            4577888888877776 5888885554433              11344577888866  77777744566899999999


Q ss_pred             CeEEEEecC-CCceEEE-EecccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC
Q 023246          143 GHLFIWKKK-GGKLVRL-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       143 g~v~vwd~~-~~~~~~~-~~~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +.+..||++ .++.+.. .+.|...|.++.-+|. ..+++||+.|..|++||.+...
T Consensus       188 ~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  188 GSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            999999998 4555544 5678899999988874 5579999999999999998543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.06  E-value=5e-10  Score=60.00  Aligned_cols=39  Identities=26%  Similarity=0.491  Sum_probs=36.8

Q ss_pred             CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  191 (285)
                      ++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=1.2e-07  Score=87.36  Aligned_cols=215  Identities=10%  Similarity=0.124  Sum_probs=124.6

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccC-CCCCcceEEEEEec-CCCEEEE-ecCC
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSN-TSELLIS-YNDE   82 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~-~~~~l~s-~~d~   82 (285)
                      -..+++++++..++++-...+.|+++|+.++..............+.-.... ...-.....++|+| ++.++++ ..++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~  705 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH  705 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence            3578899875334444455678999998765421110000000000000000 00012346899999 4556666 4589


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-------------cCceeeeeEEEecCCCc-EEEEecCCCeEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-------------RNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIW  148 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vw  148 (285)
                      .|++||...+.                 +..+.+.             ........+++ +|+++ .+++-+.++.|++|
T Consensus       706 ~I~v~d~~~g~-----------------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Irv~  767 (1057)
T PLN02919        706 QIWEYNISDGV-----------------TRVFSGDGYERNLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIRAL  767 (1057)
T ss_pred             eEEEEECCCCe-----------------EEEEecCCccccCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEEEE
Confidence            99999987651                 1111100             00012567887 88887 45566678999999


Q ss_pred             ecCCCceEEEEec---------------------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCc---
Q 023246          149 KKKGGKLVRLMVG---------------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA---  204 (285)
Q Consensus       149 d~~~~~~~~~~~~---------------------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~---  204 (285)
                      |+.++.......+                     .-.....++++++|..+++-..++.|++||+.++.+..+.+..   
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G  847 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG  847 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence            9987653211100                     0113468899999998888888999999999876543322111   


Q ss_pred             -----------ccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          205 -----------EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       205 -----------~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                                 .....+. ...+++++++-+.++.|++||+.++..
T Consensus       848 ~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                       0111111 123456788888999999999988754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.03  E-value=3.4e-08  Score=74.54  Aligned_cols=192  Identities=10%  Similarity=0.084  Sum_probs=129.4

Q ss_pred             cEEEEeeC------------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec---CCC-EEEEe-
Q 023246           17 NYFAVGGS------------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSE-LLISY-   79 (285)
Q Consensus        17 ~~l~tg~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~~-~l~s~-   79 (285)
                      ++||+|++            .|.+.+|++...+...            ...+...-+..+..+.|..   +|. .++-. 
T Consensus        25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~------------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~   92 (339)
T KOG0280|consen   25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP------------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAH   92 (339)
T ss_pred             ceEEEeeEEecCCCCchheeccceEEEeecccccCc------------cceeeeecccccceeeeeeccCCccceeeecc
Confidence            47777753            3677888887665432            1111122344566777764   344 23333 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCce----eeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ----TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      ..|.|.++.....                .....+++-....    ...++.| ++.+..++++..+|.+.+-+......
T Consensus        93 a~G~i~~~r~~~~----------------~ss~~L~~ls~~ki~~~~~lslD~-~~~~~~i~vs~s~G~~~~v~~t~~~l  155 (339)
T KOG0280|consen   93 ARGQIQLYRNDED----------------ESSVHLRGLSSKKISVVEALSLDI-STSGTKIFVSDSRGSISGVYETEMVL  155 (339)
T ss_pred             ccceEEEEeeccc----------------eeeeeecccchhhhhheeeeEEEe-eccCceEEEEcCCCcEEEEecceeee
Confidence            4888988887654                2222232221110    1345665 88899999999999998655444443


Q ss_pred             --EEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246          156 --VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       156 --~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                        +..++.|.-++.-.+|+...+ .+.+|+.|+.+..||++..+   ....+.|...+.++....+...++++|+.|-.|
T Consensus       156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i  235 (339)
T KOG0280|consen  156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECI  235 (339)
T ss_pred             eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccce
Confidence              347889999999999976544 68899999999999998433   233556888888887777778899999999999


Q ss_pred             EEEEeccc
Q 023246          230 HVLRLQRR  237 (285)
Q Consensus       230 ~vwd~~~~  237 (285)
                      ++||.++-
T Consensus       236 ~~~DtRnm  243 (339)
T KOG0280|consen  236 RVLDTRNM  243 (339)
T ss_pred             eeeehhcc
Confidence            99999853

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=1.4e-09  Score=83.57  Aligned_cols=153  Identities=15%  Similarity=0.177  Sum_probs=113.5

Q ss_pred             EEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-
Q 023246           75 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-  153 (285)
Q Consensus        75 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-  153 (285)
                      .+++|.+..|-+-++.++                 ..+.|. ....  |.++.| ...++++..|...|.|..+|++.+ 
T Consensus       227 hfs~G~sqqv~L~nvetg-----------------~~qsf~-sksD--VfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETG-----------------HQQSFQ-SKSD--VFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             eecccccceeEEEEeecc-----------------cccccc-cchh--HHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence            344567888888888876                 444454 3333  888887 777899999999999999999865 


Q ss_pred             ----ceEEEEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeecc-ccCCCceEEEe
Q 023246          154 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANK-QGREDHSRITL  223 (285)
Q Consensus       154 ----~~~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~  223 (285)
                          .+...+. |.+.|+++..-. ++++|++.+.+|+|++||++.-+    +.+..+|....-.+-. ...+.+.++++
T Consensus       286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence                3444444 889999998776 77889999999999999997543    4666666654322211 22356688999


Q ss_pred             CCCCeEEEEEecccccceeEeeeccc
Q 023246          224 TPDVIMHVLRLQRRQTLAYRERRYNA  249 (285)
Q Consensus       224 s~d~~i~vwd~~~~~~~~~~~~~~~~  249 (285)
                      +.|-..++|.+..++.+..+.+....
T Consensus       365 GdDcytRiWsl~~ghLl~tipf~~s~  390 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIPFPYSA  390 (425)
T ss_pred             cCeeEEEEEecccCceeeccCCCCcc
Confidence            99999999999999988777655433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=1.3e-09  Score=83.87  Aligned_cols=134  Identities=16%  Similarity=0.150  Sum_probs=98.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~   80 (285)
                      +..|.++.|...+ +++..|+..|.|..+|++.+..-..+         +...  -.|...|+++..-. ++++|.++ -
T Consensus       252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~---------~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M  319 (425)
T KOG2695|consen  252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGW---------CAQR--LYHDSSVTSLQILQFSQQKLMASDM  319 (425)
T ss_pred             chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCc---------ceEE--EEcCcchhhhhhhccccceEeeccC
Confidence            5567788888854 89999999999999999976321111         2222  35788899988766 56666664 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      +|+|.+||.+...             ..+.+..+.+|.+...-.-+.. .+....++++++|...++|.++.+.++.+++
T Consensus       320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence            9999999998761             1123888999987533333333 6777889999999999999999999998886


Q ss_pred             cc
Q 023246          161 GD  162 (285)
Q Consensus       161 ~h  162 (285)
                      ..
T Consensus       386 f~  387 (425)
T KOG2695|consen  386 FP  387 (425)
T ss_pred             CC
Confidence            43

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.98  E-value=1.7e-07  Score=75.44  Aligned_cols=150  Identities=15%  Similarity=0.117  Sum_probs=116.7

Q ss_pred             EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC-cEEEEE
Q 023246           11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE-LVYLFE   88 (285)
Q Consensus        11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~-~i~iwd   88 (285)
                      |++-++++++..+. |+..|.+.-.+-.                 +.-+|.+.|.-..+..+++-++.| .|| .+-|+|
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd  388 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD  388 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-----------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence            45545688888875 6777766554421                 114677789888888888866666 476 899999


Q ss_pred             cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceE
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ  168 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  168 (285)
                      ..++                 .++.+...-..  |.++.. +++|++++.+.+...+.+.|+.+++....-+...+-|+.
T Consensus       389 ~~~~-----------------e~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItd  448 (668)
T COG4946         389 KDGG-----------------EVKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITD  448 (668)
T ss_pred             cCCc-----------------eEEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEE
Confidence            9887                 55566655544  999996 999999999999999999999999876655666788999


Q ss_pred             eEEcCCCCeEEEEecCC----cEEEEcCCCCCCC
Q 023246          169 LEPHPHIPMFATCGIEK----TVKLWAPMPTDFP  198 (285)
Q Consensus       169 ~~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~  198 (285)
                      .+|||+++++|-+=-+|    .|+++|+.++++.
T Consensus       449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             EEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            99999999999876665    6899999988753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=5.6e-07  Score=75.00  Aligned_cols=158  Identities=13%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeC---CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            5 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      .+..-.|+|++..+++..+.   +..|.++|+.+++..               .+ ....+......|+|||+.++. ..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------~l-t~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------KI-ASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------EE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence            55678999987444554433   356888888877521               11 112344566789999985554 22


Q ss_pred             ---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCCc
Q 023246           81 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK  154 (285)
Q Consensus        81 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~~  154 (285)
                         +..|.++++.++                 ....+..+...  .....| +|+|+.|+-.+. .+  .|+++|+.+++
T Consensus       253 ~~g~~~Iy~~dl~~g-----------------~~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        253 PKGQPDIYLYDTNTK-----------------TLTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cCCCcEEEEEECCCC-----------------cEEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence               467888888765                 23334333321  223454 999987766553 22  68888998776


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecC---------CcEEEEcCCCCCCCCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLP  201 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~  201 (285)
                      ....... ..  ....|+|+|++++.....         ..|.+.|+.++....+.
T Consensus       313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT  365 (419)
T PRK04043        313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT  365 (419)
T ss_pred             eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC
Confidence            6433321 11  224899999997766543         26778888777654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=1.2e-07  Score=87.32  Aligned_cols=186  Identities=9%  Similarity=0.018  Sum_probs=111.0

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCCcE
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELV   84 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~~i   84 (285)
                      ..++|+|+++.++++.+.++.|++||..++........ ...............-.....|+++|++. ++++. .++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC-CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            46899996667888888899999999877643211000 00000000000001123467899999998 44443 48999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccC------ceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      ++||+.++.......  ...... .....+.....      -....++++ +++|+.+++-..++.|++||..++.....
T Consensus       765 rv~D~~tg~~~~~~g--g~~~~~-~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        765 RALDLKTGGSRLLAG--GDPTFS-DNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             EEEECCCCcEEEEEe--cccccC-cccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            999987652000000  000000 00000000000      011457886 89999889989999999999987765432


Q ss_pred             Ee-------------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          159 MV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       159 ~~-------------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      ..             ++-.....++++++|+.+++-+.++.|++||++++..
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            21             1123577899999999888888999999999987653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.95  E-value=1.3e-09  Score=99.54  Aligned_cols=146  Identities=14%  Similarity=0.240  Sum_probs=114.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e--c
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y--N   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~--~   80 (285)
                      .+|+.+.|+.+| +.+..+..||.+.+|.+..                .+......|........|-.  ..+++ |  .
T Consensus      2252 s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------KPYTSWQCHNKALSDFRFIG--SLLATAGRSS 2312 (2439)
T ss_pred             chhhhhhhcccC-CceeeeccCCceeecccCC----------------cceeccccCCccccceeeee--hhhhccccCC
Confidence            578889999976 8999999999999999872                22222377888888888876  45555 3  2


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                       ++.+.+||.....             ....++  ..|...  +++++| .|..+.+++|+.+|.|++||++..++.+++
T Consensus      2313 d~~n~~lwDtl~~~-------------~~s~v~--~~H~~g--aT~l~~-~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPP-------------MNSLVH--TCHDGG--ATVLAY-APKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             CCCcccchhcccCc-------------ccceee--eecCCC--ceEEEE-cCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence             7889999986541             012333  678766  999998 999999999999999999999988888776


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +.         ++ ...+|++++..|.++||++....
T Consensus      2375 ~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2375 QA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             hh---------hh-hhheeeccCcccceEEEEccccc
Confidence            64         44 56789999999999999997654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.92  E-value=2.7e-06  Score=69.48  Aligned_cols=237  Identities=13%  Similarity=0.123  Sum_probs=130.3

Q ss_pred             eEEEEcCCCCcEEEEeeC----CCcEEEEEccCC--cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            7 NAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      .-++++|++ .+|++...    ++.|..|.+...  ++.            ..... .........++++|++++|+++ 
T Consensus        40 s~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~-~~~g~~p~~i~~~~~g~~l~van  105 (345)
T PF10282_consen   40 SWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSV-PSGGSSPCHIAVDPDGRFLYVAN  105 (345)
T ss_dssp             CCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEE-EESSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeee-ccCCCCcEEEEEecCCCEEEEEE
Confidence            457889976 66666655    578999998754  321            11111 1123455679999999988886 


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee--c------ccCceeeeeEEEecCCCcEEEEec-CCCeEEEEe
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWK  149 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd  149 (285)
                       .++.|.++++.....          +.  .....+.  +      .+......++.+ +|+++++++.. ....|++|+
T Consensus       106 y~~g~v~v~~l~~~g~----------l~--~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen  106 YGGGSVSVFPLDDDGS----------LG--EVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             TTTTEEEEEEECTTSE----------EE--EEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEEccCCcc----------cc--eeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCEEEEEE
Confidence             399999999976310          00  0111111  0      011123677887 99999887753 355799999


Q ss_pred             cCCCc--eE--EEEe-cccccceEeEEcCCCCeEEE-EecCCcEEEEcCC--CCCCC------CCCC-Cc-c-cceeecc
Q 023246          150 KKGGK--LV--RLMV-GDRHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPM--PTDFP------PLPD-NA-E-KIMKANK  212 (285)
Q Consensus       150 ~~~~~--~~--~~~~-~h~~~v~~~~~~p~~~~l~t-~~~d~~i~iwd~~--~~~~~------~~~~-~~-~-~~~~~~~  212 (285)
                      +....  +.  ..+. ........++|+|+++++.. ...+++|.++++.  .+.+.      .+.. .. . ..-.+ .
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~  251 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI-A  251 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE-E
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE-E
Confidence            87654  32  2222 23456789999999998544 4567889999886  33211      1111 00 0 11111 1


Q ss_pred             ccCCCc-eEEEeCCCCeEEEEEecc-cccceeEeeecc----ccccCCCCCcCeEEEeecCCCCC
Q 023246          213 QGREDH-SRITLTPDVIMHVLRLQR-RQTLAYRERRYN----AADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       213 ~~~~~~-~~~~~s~d~~i~vwd~~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      ..++++ ++++-...+.|.+|++.. ...+..+..-+.    ...+....+...+|+.+..++..
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTV  316 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeE
Confidence            233444 455556678999999943 223333322111    23344444555566655555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.91  E-value=1e-07  Score=73.58  Aligned_cols=176  Identities=14%  Similarity=0.233  Sum_probs=126.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      .++++++++++ ...|++|-..|++.-+.+...-           ...........|..++..+-|+...+.+++. .|.
T Consensus        69 ~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedf-----------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk  136 (404)
T KOG1409|consen   69 SPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDF-----------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK  136 (404)
T ss_pred             CCceEeeeecc-ceEEEEEEecceEEEEEhhhhh-----------hhcchhhhhhhhhcceeeEEecCCceeEEEecccc
Confidence            36788999996 4899999999999988775321           0002222236788899999998887777774 466


Q ss_pred             cEEEEEcCCCCCCCCCCCCCcc-------------------------ccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPED-------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  137 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  137 (285)
                      .+.-.-.+.+...+...+....                         ......+.++.+|...  +.+++| .+..+.+.
T Consensus       137 ~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~Lf  213 (404)
T KOG1409|consen  137 QFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRLLF  213 (404)
T ss_pred             ceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcEEE
Confidence            6544444444322211111100                         2233566778888877  999995 99999999


Q ss_pred             EecCCCeEEEEecCCCc-eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          138 SGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       138 ~~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      +|..|..+.+||+--.+ ....+.+|...|..+..-+.-+.+.+++.||.|.+|+.+.
T Consensus       214 Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  214 SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999999986443 4567788999999998888888899999999999999754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.90  E-value=5.1e-07  Score=68.27  Aligned_cols=168  Identities=16%  Similarity=0.242  Sum_probs=103.6

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-------CEEEEe
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLISY   79 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-------~~l~s~   79 (285)
                      .-++||||+ .+||.+...|+|+++|+...++. .+...   ..     ....-...|..+.|.+..       ++|+..
T Consensus        47 Rkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf-~I~p~---~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~  116 (282)
T PF15492_consen   47 RKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF-VIPPA---MS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN  116 (282)
T ss_pred             eEEEECCCC-cEEEEEcCCCeEEEEecccceeE-EcCcc---cc-----cCCccccceeeeEeeccccccccceeEEEEe
Confidence            358999986 89999999999999999854432 11100   00     112234567777776533       356666


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-CceeeeeEEEecCCCcEEEEecC----CC-------eEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGSD----CG-------HLFI  147 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~----dg-------~v~v  147 (285)
                      -.|.++-|-+..+.           .+..+..+.|.... .+..|.++.| +|..++|+.|+.    ++       -+..
T Consensus       117 Y~G~L~Sy~vs~gt-----------~q~y~e~hsfsf~~~yp~Gi~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~GLta  184 (282)
T PF15492_consen  117 YRGQLRSYLVSVGT-----------NQGYQENHSFSFSSHYPHGINSAVY-HPKHRLLLVGGCEQNQDGMSKASSCGLTA  184 (282)
T ss_pred             ccceeeeEEEEccc-----------CCcceeeEEEEecccCCCceeEEEE-cCCCCEEEEeccCCCCCccccccccCceE
Confidence            78777766653220           00112334433211 1123999997 888888777653    11       2556


Q ss_pred             EecCCCceEE-----------------------E---E---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          148 WKKKGGKLVR-----------------------L---M---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       148 wd~~~~~~~~-----------------------~---~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      |.+-++.+-.                       .   +   ......|..|..+|+|..||+...+|.|.+|++-.-+
T Consensus       185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            6543221100                       0   0   1124678999999999999999999999999986544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.1e-06  Score=72.04  Aligned_cols=197  Identities=15%  Similarity=0.210  Sum_probs=126.0

Q ss_pred             CccceeEEEEcCCCC-cEEEE-----eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-
Q 023246            2 NSIRLNAIVIDPRNP-NYFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-   74 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~-~~l~t-----g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-   74 (285)
                      ...+|+.+.+||... ..+|+     ++.-..|+||.+.......      ++   ..+.++   ...=-.+.|++-|. 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~------~~---a~ksFF---kadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ------PV---ANKSFF---KADKVQMKWNKLGTA  231 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc------hh---hhcccc---ccceeEEEeccCCce
Confidence            456788899999522 34443     3455689999887322110      00   111111   11223567888776 


Q ss_pred             E--EEEec-CC---------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEE--e
Q 023246           75 L--LISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMS--G  139 (285)
Q Consensus        75 ~--l~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~--~  139 (285)
                      +  |++.. |.         ++++.+++..                .  ..+... .++  |.++.| +++++.++.  |
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s--~~V~L~k~GP--Vhdv~W-~~s~~EF~VvyG  290 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGE----------------S--VSVPLLKEGP--VHDVTW-SPSGREFAVVYG  290 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCc----------------e--EEEecCCCCC--ceEEEE-CCCCCEEEEEEe
Confidence            2  23332 44         4888888732                1  222322 344  999996 999976654  6


Q ss_pred             cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCCC-CCCCCCcccceeeccccC
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR  215 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~  215 (285)
                      -.=..+.+||++ ++++..+.  .++=+++-|+|.|++++.+|.   .|.|-+||....+. ..+.....   ....+.+
T Consensus       291 fMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t---t~~eW~P  364 (566)
T KOG2315|consen  291 FMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT---TVFEWSP  364 (566)
T ss_pred             cccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc---eEEEEcC
Confidence            667889999998 88887775  577888999999999888885   47899999987654 33322222   2223567


Q ss_pred             CCceEEEeCC------CCeEEEEEeccc
Q 023246          216 EDHSRITLTP------DVIMHVLRLQRR  237 (285)
Q Consensus       216 ~~~~~~~~s~------d~~i~vwd~~~~  237 (285)
                      +++++++++.      |..++||+....
T Consensus       365 dGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  365 DGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CCcEEEEEeccccEEecCCeEEEEecCc
Confidence            7778777655      588999997654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.87  E-value=3.2e-08  Score=73.51  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=122.9

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      |..+.+.-+  ..|+++..++.+......++.+...++-...+..+   ..+..|+++-.+-+.+-.+.-++++ .||.+
T Consensus        39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~---~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~  113 (319)
T KOG4714|consen   39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPF---KVLAKNSEIDPNDACTMTDNRVCIGYADGSL  113 (319)
T ss_pred             EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCce---eeeeccCCCCCcccccccCCceEecCCCceE
Confidence            667777774  68999999888888877666554443322222211   1112333333333333344566664 59999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-----CCeEEEEecCCCceEEEE
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~  159 (285)
                      .+++.+.-.               ...+........  ..+.++ -..++++.++.-     -+..+.|+++..+.+..-
T Consensus       114 ~v~s~~~~~---------------~~~~~i~~~~~~--~as~~~-~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen  114 AVFSTDKDL---------------ALMSRIPSIHSG--SASRKI-CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             EEEechHHH---------------hhhhhccccccc--ccccce-eecccEEecCCcceEeeccceeeeccccccccccc
Confidence            999986431               111111111111  122222 234555554432     234556666543322211


Q ss_pred             ecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          160 VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ......|.+++-+|..+. +++|+.||.+.+||.+...  ...+..|..++..+..-......+++.+.||.+..||..+
T Consensus       176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            112244999999997666 6777789999999998764  2345667777777766666777899999999999999664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.85  E-value=4.9e-06  Score=67.96  Aligned_cols=212  Identities=10%  Similarity=0.169  Sum_probs=117.8

Q ss_pred             eEEEEcCCCCcEEEEee-CCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--cCC
Q 023246            7 NAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE   82 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~--~d~   82 (285)
                      ..++++|++ .+|+++. .+|+|.++++.. +........... ....+. ....-.....++.|+|+++++++.  ...
T Consensus        90 ~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~-~g~g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   90 CHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH-EGSGPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             EEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEES-EEEESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             EEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeeccc-CCCCCc-ccccccccceeEEECCCCCEEEEEecCCC
Confidence            358899986 5655555 689999999986 332111000000 000000 001223457789999999977774  366


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecC--CCce--EE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKK--GGKL--VR  157 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~--~~~~--~~  157 (285)
                      .|.+|++.....            .......+..... .....+.| +|++++++. .-.++.|.++++.  +++.  +.
T Consensus       167 ~v~~~~~~~~~~------------~l~~~~~~~~~~G-~GPRh~~f-~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  167 RVYVYDIDDDTG------------KLTPVDSIKVPPG-SGPRHLAF-SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             EEEEEEE-TTS-------------TEEEEEEEECSTT-SSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEEeCCCc------------eEEEeeccccccC-CCCcEEEE-cCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            899999976510            0011222322221 23678997 999988855 4568889999988  4432  22


Q ss_pred             EEec----c--cccceEeEEcCCCCeEEEEe-cCCcEEEEcCCC--CCCCC---CCCCcccceeeccccCCCc-eEEEeC
Q 023246          158 LMVG----D--RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFPP---LPDNAEKIMKANKQGREDH-SRITLT  224 (285)
Q Consensus       158 ~~~~----h--~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~s  224 (285)
                      .+..    .  ......++++|++++|.++. ....|.+|++..  +.+..   +.........+.. .++++ ++++.-
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-s~~g~~l~Va~~  311 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-SPDGRYLYVANQ  311 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE--TTSSEEEEEET
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-eCCCCEEEEEec
Confidence            2221    1  12577899999999966655 567899999843  34322   1111111222222 33444 445556


Q ss_pred             CCCeEEEEEecc
Q 023246          225 PDVIMHVLRLQR  236 (285)
Q Consensus       225 ~d~~i~vwd~~~  236 (285)
                      .++.|.+|++..
T Consensus       312 ~s~~v~vf~~d~  323 (345)
T PF10282_consen  312 DSNTVSVFDIDP  323 (345)
T ss_dssp             TTTEEEEEEEET
T ss_pred             CCCeEEEEEEeC
Confidence            778999998863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.84  E-value=3.5e-06  Score=65.48  Aligned_cols=217  Identities=11%  Similarity=0.048  Sum_probs=129.2

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe-cCCCEEEEecCCcEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL   86 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~~d~~i~i   86 (285)
                      +..|.+..+.++++-...+.|..|+..+++..              ...    ......+++. +++.++++.. +.+.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~~~----~~~~~G~~~~~~~g~l~v~~~-~~~~~   64 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------VID----LPGPNGMAFDRPDGRLYVADS-GGIAV   64 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------EEE----SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------EEe----cCCCceEEEEccCCEEEEEEc-CceEE
Confidence            57899855578888878999999999877521              111    1126677887 6666666554 44555


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeec--cc-CceeeeeEEEecCCCcEEEEecCC--------CeEEEEecCCCce
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL  155 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g~v~vwd~~~~~~  155 (285)
                      +|..++                +....+..  .. .....+.+++ +++|++.++....        |.|+.++.. ++.
T Consensus        65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~  126 (246)
T PF08450_consen   65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV  126 (246)
T ss_dssp             EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred             EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence            688765                22222221  11 2244889997 9999987775543        668888887 554


Q ss_pred             EEEEecccccceEeEEcCCCCeEE-EEecCCcEEEEcCCCCC--C------CCCCCCcccceeeccccCCCceEEEeCCC
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTD--F------PPLPDNAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      ..... .-...+.++|+|+++.|. +-+..+.|..+++....  +      ..+..... ...-.....++.+.++....
T Consensus       127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-YPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-EEEEEEEBTTS-EEEEEETT
T ss_pred             EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCc-CCCcceEcCCCCEEEEEcCC
Confidence            43333 356678999999999765 55677888888885322  1      11111110 01111123345577777788


Q ss_pred             CeEEEEEecccccceeEeee-ccccccCC-CCCcCeEEEe
Q 023246          227 VIMHVLRLQRRQTLAYRERR-YNAADFES-DEEEGETYLL  264 (285)
Q Consensus       227 ~~i~vwd~~~~~~~~~~~~~-~~~~~~~~-~~~~~~v~~~  264 (285)
                      +.|.+++-+ ++.+..+... +....++. +++.+.+|+.
T Consensus       205 ~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  205 GRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             TEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            999999866 6666555433 33444444 3455667764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.83  E-value=4e-08  Score=74.89  Aligned_cols=182  Identities=16%  Similarity=0.209  Sum_probs=116.2

Q ss_pred             ceeEEEEcC-CCCcEEEEeeCCCcEEEEEccCCcccC--------CcCC--CCCccc-----------------cccccc
Q 023246            5 RLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYS--------PISS--DTPVDT-----------------FCPRHL   56 (285)
Q Consensus         5 ~v~~~~~s~-~~~~~l~tg~~dg~v~iwd~~~~~~~~--------~~~~--~~~~~~-----------------~~~~~~   56 (285)
                      +|+.+.|-. .+...++..+.|.+|++|.+....+..        .+..  .+|+.+                 ..+..+
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv  166 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV  166 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence            567788754 444677888899999999987552110        0000  111111                 112222


Q ss_pred             -CCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc---eeeeeEEEecC-
Q 023246           57 -IGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGP-  131 (285)
Q Consensus        57 -~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~-  131 (285)
                       ...|...+.++.|..+.+.+.++.|-.|.+|++....    .++.         +..++.|...   ..|++..| +| 
T Consensus       167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D----~sFn---------IVDiKP~nmeeLteVItSaeF-hp~  232 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIID----GSFN---------IVDIKPHNMEELTEVITSAEF-HPE  232 (460)
T ss_pred             ccccceeEeeeeeecCchheeeeccceeeeeccccccC----CceE---------EEeccCccHHHHHHHHhhccc-CHh
Confidence             2578889999999999999999999999999997542    1111         1112222211   12677777 54 


Q ss_pred             CCcEEEEecCCCeEEEEecCCCce------EEE----------EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          132 NDEYVMSGSDCGHLFIWKKKGGKL------VRL----------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~~~~------~~~----------~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      ..+.+.-.+..|.|++-|++...+      +..          +.+-...|..+.|+|+|+++++-.. -++++||.+..
T Consensus       233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            456677778899999999984332      111          1122356888999999999987764 58999998755


Q ss_pred             C--CCCCC
Q 023246          196 D--FPPLP  201 (285)
Q Consensus       196 ~--~~~~~  201 (285)
                      +  +.+++
T Consensus       312 k~pikTi~  319 (460)
T COG5170         312 KNPIKTIP  319 (460)
T ss_pred             cCCceeec
Confidence            4  44443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.80  E-value=3e-08  Score=83.74  Aligned_cols=205  Identities=11%  Similarity=0.139  Sum_probs=136.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC---EEEEe
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~---~l~s~   79 (285)
                      .+++.++.++|-+ +-+|.++.-| +.+-|+...-.             .+..+..-..-.|-.+.|+|...   .+++.
T Consensus        24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~-------------ppr~l~h~tpw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFT-------------PPRWLHHITPWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             cCcccceeecccc-chhhhhhhcC-eEEEeccCCCC-------------CceeeeccCcchhcceecccCCCCceeEEec
Confidence            4577889999975 6666666654 34556553320             11111111233466788988653   56666


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL  158 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~  158 (285)
                      +...-.+|++....               .....|..|.....|+.+.|.......+++++.|-.+..||+++.. ++..
T Consensus        89 s~qkaiiwnlA~ss---------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys  153 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSS---------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS  153 (1081)
T ss_pred             CcchhhhhhhhcCC---------------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence            77777889987542               2223333333334499999743455678999999999999998754 5666


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +..-......|+|+.....++..+..+.|++||++.+.  +..+++|...+..+.....-...+++.+.|++|+.||...
T Consensus       154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            65545667889999876666666677889999998664  4667777766655544443444678899999999999765


Q ss_pred             c
Q 023246          237 R  237 (285)
Q Consensus       237 ~  237 (285)
                      .
T Consensus       234 S  234 (1081)
T KOG0309|consen  234 S  234 (1081)
T ss_pred             c
Confidence            4

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.80  E-value=5e-06  Score=67.29  Aligned_cols=225  Identities=11%  Similarity=0.066  Sum_probs=139.0

Q ss_pred             cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcc-cccccccCCCCCcceEEEE-Eec-CCCEEEEecCCcEEEEE
Q 023246           12 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD-TFCPRHLIGKNNIHITGLA-YSN-TSELLISYNDELVYLFE   88 (285)
Q Consensus        12 s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~i~-~s~-~~~~l~s~~d~~i~iwd   88 (285)
                      +.||.++++  +.-|.|.+||..+.++.+. +..-|+. .-...    ..-.+..-+. |++ +|.+++.-+-|+..|.+
T Consensus       275 nsDGkrIvF--q~~GdIylydP~td~lekl-dI~lpl~rk~k~~----k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~  347 (668)
T COG4946         275 NSDGKRIVF--QNAGDIYLYDPETDSLEKL-DIGLPLDRKKKQP----KFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR  347 (668)
T ss_pred             CCCCcEEEE--ecCCcEEEeCCCcCcceee-ecCCccccccccc----cccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence            345534444  3458899999887654321 1111111 00000    0011111122 443 57888888888888888


Q ss_pred             cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC-eEEEEecCCCceEEEEecccccce
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVN  167 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~h~~~v~  167 (285)
                      ...+                ..++  -++...  |.-..+ ..+++-++.|..|| .+-++|.++++. ..+...-+.|.
T Consensus       348 ~~~~----------------~~iq--v~~~~~--VrY~r~-~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~  405 (668)
T COG4946         348 PWDG----------------YSIQ--VGKKGG--VRYRRI-QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIE  405 (668)
T ss_pred             CCCC----------------eeEE--cCCCCc--eEEEEE-ccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceE
Confidence            7654                1222  234444  666665 66777888899999 899999997654 44555678999


Q ss_pred             EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC----CeEEEEEecccccceeE
Q 023246          168 QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----~~i~vwd~~~~~~~~~~  243 (285)
                      ++..+|+|++++.+.....+.+.|+.++.++.+.......+.-..+.++++.++-+-++    ..|+++|+..++.....
T Consensus       406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            99999999999999988899999999998766654444444444446677777666666    46899999887655443


Q ss_pred             eeeccccccCCCCCcCeEEEee
Q 023246          244 ERRYNAADFESDEEEGETYLLG  265 (285)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~  265 (285)
                      .....--.-+.+++...+|.+.
T Consensus       486 T~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CCcccccCcccCCCCcEEEEEe
Confidence            2222122223344444455553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.4e-05  Score=62.52  Aligned_cols=162  Identities=15%  Similarity=0.168  Sum_probs=103.4

Q ss_pred             ceeEEEEcCCCCcEEEEeeC---CCcEEEEEccC--CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      ..+=++|+|++ +.|+++-.   +|.|..|.+..  |++..           .-.....  ..+...++++++|++++++
T Consensus        41 nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~~~~~--g~~p~yvsvd~~g~~vf~A  106 (346)
T COG2706          41 NPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNRQTLP--GSPPCYVSVDEDGRFVFVA  106 (346)
T ss_pred             CCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eeccccC--CCCCeEEEECCCCCEEEEE
Confidence            34568999975 67777754   47788887764  44211           1111112  2233789999999998886


Q ss_pred             c--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc--------eeeeeEEEecCCCcEEEEecC-CCeEEEE
Q 023246           80 N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSD-CGHLFIW  148 (285)
Q Consensus        80 ~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~l~~~~~-dg~v~vw  148 (285)
                      +  .|.|.++-++......            ..+..+. |...        ..+....+ .|+++++++..- --.|.+|
T Consensus       107 nY~~g~v~v~p~~~dG~l~------------~~v~~~~-h~g~~p~~rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706         107 NYHSGSVSVYPLQADGSLQ------------PVVQVVK-HTGSGPHERQESPHVHSANF-TPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EccCceEEEEEcccCCccc------------cceeeee-cCCCCCCccccCCccceeee-CCCCCEEEEeecCCceEEEE
Confidence            4  8999999997641110            0111111 1110        11455665 999999988654 4468999


Q ss_pred             ecCCCceEEEEe---cccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCC
Q 023246          149 KKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP  194 (285)
Q Consensus       149 d~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~  194 (285)
                      ++..|++...-.   ........|+|+|++++.... -.+++|-+|..+.
T Consensus       173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            999876532211   234677899999999995544 4789999998765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.76  E-value=7.7e-06  Score=74.50  Aligned_cols=213  Identities=11%  Similarity=0.106  Sum_probs=131.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEE----EccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ...|.++.|-++. ..++.+..+|.|.+.    +......                .....-...|.+++||||+++|+.
T Consensus        75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~----------------E~VG~vd~GI~a~~WSPD~Ella~  137 (928)
T PF04762_consen   75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEI----------------EIVGSVDSGILAASWSPDEELLAL  137 (928)
T ss_pred             CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCcee----------------EEEEEEcCcEEEEEECCCcCEEEE
Confidence            4678899999975 788889999999999    4443321                111233668999999999998877


Q ss_pred             e-cCCcEEEEEcCCCC---------------------CCCCCCCCCccc-------cCCCCc----eEeecccCceeeee
Q 023246           79 Y-NDELVYLFEKNMGL---------------------GPSPLSLSPEDL-------QKREEP----QVYSGHRNSQTVKG  125 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~i~~  125 (285)
                      . .++++.+.+..-..                     +.....++...-       +.....    ..+. ..+.  -..
T Consensus       138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~  214 (928)
T PF04762_consen  138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR  214 (928)
T ss_pred             EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence            4 57888777543111                     000001110000       000000    1111 2222  456


Q ss_pred             EEEecCCCcEEEEecC------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCC
Q 023246          126 VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD  196 (285)
Q Consensus       126 ~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~  196 (285)
                      ++| -.||+|+++.+-      -..++||+.+ |++..+.+.-.+--.+++|.|.|+++|+...   ...|.+|.-++.+
T Consensus       215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr  292 (928)
T PF04762_consen  215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR  292 (928)
T ss_pred             EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence            774 999999988764      3579999987 7766555544455567899999999998874   3468888866544


Q ss_pred             CC----CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          197 FP----PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       197 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      -.    .+......+..+.| ..++..++....|. |.+|-..+.+-
T Consensus       293 hgeF~l~~~~~~~~v~~l~W-n~ds~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAW-NSDSEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             eeeEecCCCCCCceeeEEEE-CCCCCEEEEEecCC-ceEEEeeCCEE
Confidence            21    22233445556655 55555555544444 99998877543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1.7e-05  Score=62.03  Aligned_cols=200  Identities=10%  Similarity=0.161  Sum_probs=119.4

Q ss_pred             eEEEEcCCCCcEEEEee-CCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCc----------ceEEEEEecCCC
Q 023246            7 NAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNI----------HITGLAYSNTSE   74 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~----------~v~~i~~s~~~~   74 (285)
                      .-+++++++ ++++++. .-|.|.++-+.. |.+.....            . ..|.+          .+....+.|+++
T Consensus        92 ~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~------------~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~  157 (346)
T COG2706          92 CYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQ------------V-VKHTGSGPHERQESPHVHSANFTPDGR  157 (346)
T ss_pred             eEEEECCCC-CEEEEEEccCceEEEEEcccCCcccccee------------e-eecCCCCCCccccCCccceeeeCCCCC
Confidence            568899986 6666665 468999999975 43221111            0 12222          277899999999


Q ss_pred             EEEEec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecC
Q 023246           75 LLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKK  151 (285)
Q Consensus        75 ~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~  151 (285)
                      +|++..  -..|.+|++..+.           +... ....++ ..  ..-..+.| +|++++.....+ +++|.+|..+
T Consensus       158 ~l~v~DLG~Dri~~y~~~dg~-----------L~~~-~~~~v~-~G--~GPRHi~F-Hpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         158 YLVVPDLGTDRIFLYDLDDGK-----------LTPA-DPAEVK-PG--AGPRHIVF-HPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             EEEEeecCCceEEEEEcccCc-----------cccc-cccccC-CC--CCcceEEE-cCCCcEEEEEeccCCEEEEEEEc
Confidence            988854  5679999998651           1111 111121 12  22678998 999999977665 8999999987


Q ss_pred             CC-ceEEEEec---------ccccceEeEEcCCCCeEEEEec-CCcEEEEcCC--CCCCC---CCCCCcccceeeccccC
Q 023246          152 GG-KLVRLMVG---------DRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPM--PTDFP---PLPDNAEKIMKANKQGR  215 (285)
Q Consensus       152 ~~-~~~~~~~~---------h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~--~~~~~---~~~~~~~~~~~~~~~~~  215 (285)
                      .. ..+..++.         ......++.++|+|++|..+.. ...|-++.+.  ++++.   ....+.......+. .+
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i-~~  300 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI-NP  300 (346)
T ss_pred             CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee-CC
Confidence            63 23333321         1345678899999999887752 3367777653  33321   11111111111211 22


Q ss_pred             CCceEEEeCC-CCeEEEEEeccc
Q 023246          216 EDHSRITLTP-DVIMHVLRLQRR  237 (285)
Q Consensus       216 ~~~~~~~~s~-d~~i~vwd~~~~  237 (285)
                      .+++++++.. +..|.+|.+...
T Consensus       301 ~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         301 SGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCCEEEEEccCCCcEEEEEEcCC
Confidence            3445555544 477888876653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.73  E-value=1.9e-05  Score=63.63  Aligned_cols=230  Identities=11%  Similarity=0.001  Sum_probs=120.3

Q ss_pred             EcCCCCcEEEEee---------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--
Q 023246           11 IDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--   79 (285)
Q Consensus        11 ~s~~~~~~l~tg~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~--   79 (285)
                      ++|++..+.++.+         .+..|.+||..+.+....+..+...     ...   .......++++|+|++|...  
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p-----~~~---~~~~~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP-----RFL---VGTYPWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc-----hhh---ccCccceEEECCCCCEEEEecC
Confidence            8998755666666         6899999999999865444332210     000   12234478999999977764  


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceE-
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLV-  156 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~-  156 (285)
                      + +..|.+.|+.++                +.+..+......   .-..  ..+..+++- +.||......+. +++.. 
T Consensus       125 ~p~~~V~VvD~~~~----------------kvv~ei~vp~~~---~vy~--t~e~~~~~~-~~Dg~~~~v~~d~~g~~~~  182 (352)
T TIGR02658       125 SPSPAVGVVDLEGK----------------AFVRMMDVPDCY---HIFP--TANDTFFMH-CRDGSLAKVGYGTKGNPKI  182 (352)
T ss_pred             CCCCEEEEEECCCC----------------cEEEEEeCCCCc---EEEE--ecCCccEEE-eecCceEEEEecCCCceEE
Confidence            3 899999999987                555555532211   1111  122222222 234444433322 12211 


Q ss_pred             EE---Eecccccce-EeEEcC-CCCeEEEEecCCcEEEEcCCCCCCCC-----CCCCc-------ccceeeccccCC-Cc
Q 023246          157 RL---MVGDRHVVN-QLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNA-------EKIMKANKQGRE-DH  218 (285)
Q Consensus       157 ~~---~~~h~~~v~-~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~-------~~~~~~~~~~~~-~~  218 (285)
                      ..   +.....++. .-.+.+ +++++....+ |+|.+.|+.......     +....       ..-........+ .+
T Consensus       183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~  261 (352)
T TIGR02658       183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR  261 (352)
T ss_pred             eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence            11   111001110 003455 7777655555 999999975443211     10000       000011111223 33


Q ss_pred             eEEEe---------CCCCeEEEEEecccccceeEeeeccccccCCCCCcC-eEEEeecCCCCC
Q 023246          219 SRITL---------TPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEG-ETYLLGFSDSDA  271 (285)
Q Consensus       219 ~~~~~---------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  271 (285)
                      +++..         ...+.|.++|..+++.+.++........++...++. .+|+....+++.
T Consensus       262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence            44433         223689999999998888876555555555555555 566655444433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=1.9e-06  Score=71.92  Aligned_cols=155  Identities=7%  Similarity=-0.009  Sum_probs=90.8

Q ss_pred             eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--C
Q 023246            6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D   81 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--d   81 (285)
                      +...+|+||+..++++.+.++  .|.++|+.+++..               .+ ..+........|+|||+.|+-.+  .
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~---------------~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~  298 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT---------------QI-TNYPGIDVNGNFVEDDKRIVFVSDRL  298 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE---------------Ec-ccCCCccCccEECCCCCEEEEEECCC
Confidence            456789999755666665554  4666677666421               11 11122223457999998555432  2


Q ss_pred             --CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---------CeEEEEec
Q 023246           82 --ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIWKK  150 (285)
Q Consensus        82 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~v~vwd~  150 (285)
                        ..|+++|+.++                +. +.+.....    .... |+|+|++++.....         ..|++.|+
T Consensus       299 g~~~Iy~~dl~~g----------------~~-~rlt~~g~----~~~~-~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        299 GYPNIFMKKLNSG----------------SV-EQVVFHGK----NNSS-VSTYKNYIVYSSRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             CCceEEEEECCCC----------------Ce-EeCccCCC----cCce-ECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence              26888888765                22 22221111    1135 49999988765543         37888899


Q ss_pred             CCCceEEEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCCCCC
Q 023246          151 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPL  200 (285)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~  200 (285)
                      .+++. ..+... .......|+|+|++++....++   .+.+.++.+.....+
T Consensus       357 ~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l  407 (419)
T PRK04043        357 NSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF  407 (419)
T ss_pred             CCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence            87764 344432 2334688999999876655332   366667766544333

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.70  E-value=6.6e-09  Score=86.22  Aligned_cols=201  Identities=13%  Similarity=0.182  Sum_probs=132.4

Q ss_pred             eeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEec---
Q 023246            6 LNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISYN---   80 (285)
Q Consensus         6 v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~~---   80 (285)
                      +.|+++.-+. ..+++.|..+|.|.+-.++...-             .......+|....++++|++- ...||.|-   
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkh  125 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKH  125 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhhhh
Confidence            4566665533 26899999999999988875431             123344778889999999995 45777762   


Q ss_pred             --CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           81 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        81 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                        |..+.|||+.+...            ..+....|.+ ....  ..+++| ..+.+++++|.....+.++|++.. +..
T Consensus       126 rnds~~~Iwdi~s~lt------------vPke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs-~~~  189 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLLT------------VPKESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQS-LDS  189 (783)
T ss_pred             cccCCccceecccccC------------CCccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhh-hhh
Confidence              66799999987631            0011112222 2222  557775 788899999999999999999832 222


Q ss_pred             EEecccccceEeEEcC-CCCeEEEEecCCcEEEEc-CCCCC--CCCCC----CCcccceeeccccCCCceEEEeCCC-Ce
Q 023246          158 LMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWA-PMPTD--FPPLP----DNAEKIMKANKQGREDHSRITLTPD-VI  228 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~d-~~  228 (285)
                      ...-.+..+..+..+| ...++++-. |+.|-+|| .+.-+  ++.+.    .....+..+.|++.....+++.+.| ++
T Consensus       190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            2222344566777888 677777666 99999999 43322  12221    1223477888877766677766665 88


Q ss_pred             EEEEEecc
Q 023246          229 MHVLRLQR  236 (285)
Q Consensus       229 i~vwd~~~  236 (285)
                      |+.+|+..
T Consensus       269 Irlydi~~  276 (783)
T KOG1008|consen  269 IRLYDICV  276 (783)
T ss_pred             EEEecccc
Confidence            99998864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.69  E-value=3.7e-06  Score=76.49  Aligned_cols=208  Identities=9%  Similarity=0.084  Sum_probs=120.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEcc----CCcccCCcC--CCCCc--------ccc---------------ccc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIR----KCHWYSPIS--SDTPV--------DTF---------------CPR   54 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~----~~~~~~~~~--~~~~~--------~~~---------------~~~   54 (285)
                      .+|.+++||||. ++|+..+.++++.+.+-.    ....+....  ..+++        ..|               ...
T Consensus       121 ~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  121 SGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            579999999985 899999989998886421    111000000  00000        000               000


Q ss_pred             ----ccCCCCCcceEEEEEecCCCEEEEec----C---CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceee
Q 023246           55 ----HLIGKNNIHITGLAYSNTSELLISYN----D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV  123 (285)
Q Consensus        55 ----~~~~~h~~~v~~i~~s~~~~~l~s~~----d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  123 (285)
                          ..+. +...-..|+|-.||+++|++.    .   ..++||+-...                 ...+-. .... --
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-----------------L~stSE-~v~g-Le  259 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-----------------LQSTSE-PVDG-LE  259 (928)
T ss_pred             ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-----------------EEeccc-cCCC-cc
Confidence                1112 444667899999999998842    2   46899997621                 211111 1111 12


Q ss_pred             eeEEEecCCCcEEEEecC---CCeEEEEecCCCceEEEE----ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          124 KGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLM----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       124 ~~~~~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      ..++ |-|.|+++++.-.   ...|.+|..+ |-.-..|    ......|..++|++++..||..-.|. |.+|-..+..
T Consensus       260 ~~l~-WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  260 GALS-WRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             CCcc-CCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            3567 5999999988654   4567777754 3332222    23456899999999999999887665 9999887654


Q ss_pred             C---CCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          197 F---PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       197 ~---~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .   +.+.- ....+....|-......+..++.++.+..+++.
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            1   12211 112222244433344456666666766655543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=3e-06  Score=71.97  Aligned_cols=219  Identities=12%  Similarity=0.171  Sum_probs=137.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      +++.|.-+.|+..+ ..|-|...+|.|.+|-+..+..             +...+-.....-|.+++|..+|..++. ..
T Consensus        70 H~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW-------------~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe  135 (1189)
T KOG2041|consen   70 HNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSW-------------CEEMINNRNKSVVVSMSWNLDGTKICIVYE  135 (1189)
T ss_pred             CcceEEEEEecccc-ccccccCCCceEEEEeeecccH-------------HHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence            46788999999965 7888999999999999998864             433343455677899999999987776 46


Q ss_pred             CCcEEEEEcCCCC------CCCC-------------------CCCCCcc-----ccCCC--C----ceEeecccCceeee
Q 023246           81 DELVYLFEKNMGL------GPSP-------------------LSLSPED-----LQKRE--E----PQVYSGHRNSQTVK  124 (285)
Q Consensus        81 d~~i~iwd~~~~~------~~~~-------------------~~~~~~~-----~~~~~--~----~~~~~~~~~~~~i~  124 (285)
                      ||.|.+=.+....      ....                   ......+     ..+.+  +    ...+......  |.
T Consensus       136 DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k--ia  213 (1189)
T KOG2041|consen  136 DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK--IA  213 (1189)
T ss_pred             cCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc--cc
Confidence            8887665554332      0000                   0000000     00000  0    0011111111  44


Q ss_pred             eEEEe-------cCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCC---------cEE
Q 023246          125 GVNFF-------GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------TVK  188 (285)
Q Consensus       125 ~~~~~-------~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---------~i~  188 (285)
                      .+.|+       .|+...++.+...|.+.+..-.+......+. ..-.+....|+++|..|+.|+.|.         .|.
T Consensus       214 ~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  214 EIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             ceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence            45432       4577889999999999887654333222222 235788899999999999998753         577


Q ss_pred             EEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          189 LWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      +|.+-+..+.+++.....+..+.|...  .+.++...|+.|++-+++....
T Consensus       293 Fysp~G~i~gtlkvpg~~It~lsWEg~--gLriA~AvdsfiyfanIRP~yk  341 (1189)
T KOG2041|consen  293 FYSPYGHIVGTLKVPGSCITGLSWEGT--GLRIAIAVDSFIYFANIRPEYK  341 (1189)
T ss_pred             EeccchhheEEEecCCceeeeeEEcCC--ceEEEEEecceEEEEeecccce
Confidence            887766666666666666666665443  3555666677777777665433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1.1e-05  Score=69.07  Aligned_cols=154  Identities=14%  Similarity=0.204  Sum_probs=110.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---------
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---------   73 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---------   73 (285)
                      +..-.++.|+|.|  +||-|+. ..|.+-|..+-+.+              ..+ ..|...|+.+.|.|..         
T Consensus        15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~i--------------qsi-e~h~s~V~~VrWap~~~p~~llS~~   76 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLI--------------QSI-ELHQSAVTSVRWAPAPSPRDLLSPS   76 (1062)
T ss_pred             cccccccccCccc--eEEEecC-ceEEEEehhhhhhh--------------hcc-ccCccceeEEEeccCCCchhccCcc
Confidence            3345678999964  8887775 57888898877632              222 6788899999997731         


Q ss_pred             --C-EEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe--cCCC-cEEEEecCCCeEE
Q 023246           74 --E-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHLF  146 (285)
Q Consensus        74 --~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~l~~~~~dg~v~  146 (285)
                        + +||++. .|.|.+||....                ..+..+..+..+  +..++|.  -++. ..+++-.....+.
T Consensus        77 ~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~lv  138 (1062)
T KOG1912|consen   77 SSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTLV  138 (1062)
T ss_pred             ccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEEE
Confidence              2 455565 899999999877                455566666655  7888752  2344 4566667778999


Q ss_pred             EEecCCCceEEEEecccccceEeEEcCC-CCeEEEEecCCcEEEEcC
Q 023246          147 IWKKKGGKLVRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       147 vwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~  192 (285)
                      +|+..+|+.+.....-.....++.+.|- .+.+..-+..|.+.+-+.
T Consensus       139 LwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  139 LWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             EEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            9999999999887655566777899884 445666666777777664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.66  E-value=1.9e-06  Score=65.96  Aligned_cols=186  Identities=18%  Similarity=0.233  Sum_probs=110.8

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccc--c-CCCCCcceEEEEEecCC---CEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH--L-IGKNNIHITGLAYSNTS---ELLI   77 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-~~~h~~~v~~i~~s~~~---~~l~   77 (285)
                      ..|+++.|...| .+|+||...|.|.+|.-.... ....+.-...+.+.+..  + .-.-...|..|.|-.++   ++|+
T Consensus        27 d~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          27 DKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            468999999975 899999999999999765332 11111000010000000  0 00113468889988765   3888


Q ss_pred             EecCCcEEEEEcCCCC--------------CCCCCCC-CCcc--ccCC---------CCceEe-ecccCceeeeeEEEec
Q 023246           78 SYNDELVYLFEKNMGL--------------GPSPLSL-SPED--LQKR---------EEPQVY-SGHRNSQTVKGVNFFG  130 (285)
Q Consensus        78 s~~d~~i~iwd~~~~~--------------~~~~~~~-~~~~--~~~~---------~~~~~~-~~~~~~~~i~~~~~~~  130 (285)
                      ++.|.+|++|-+...+              .+....+ +...  +++.         ++.+.+ ..|.  -.|.++.+ +
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~--yhiNSiS~-N  181 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP--YHINSISF-N  181 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce--eEeeeeee-c
Confidence            8999999999987553              0111000 0000  1110         011111 2344  33889997 7


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCce---EEEEeccc-----ccceEeEEcCCCC-eEEEEecCCcEEEEcCCCC
Q 023246          131 PNDEYVMSGSDCGHLFIWKKKGGKL---VRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       131 ~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~h~-----~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~  195 (285)
                      .+.+.++++ +|-.|.+|+++-...   +-.++.|.     .-|++..|+|..- .+.-.+..|.|++-|+++.
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            777777665 478899999764332   33334443     4588899999644 4677777899999999843

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.65  E-value=1.4e-05  Score=62.35  Aligned_cols=203  Identities=14%  Similarity=0.146  Sum_probs=129.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCc-EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec---
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---   80 (285)
                      +...++.+|..+..++.+-.-|+ ..+||..+++....+..+      .-.++ .+|      -.||++|++|.+..   
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yGH------g~fs~dG~~LytTEnd~   72 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YGH------GVFSPDGRLLYTTENDY   72 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ecC------EEEcCCCCEEEEecccc
Confidence            44578899976778888887776 567999998754332211      11111 344      47999999888753   


Q ss_pred             ---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC----------------
Q 023246           81 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------------  141 (285)
Q Consensus        81 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----------------  141 (285)
                         .|.|-|||.....               +.+..|..+.-.  -..+.+ .|+++.|+.+..                
T Consensus        73 ~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecChh
Confidence               4789999998432               566677766543  566775 899977766532                


Q ss_pred             --CCeEEEEecCCCceEEEEe----cccccceEeEEcCCCCeEEEEecCC-------cEEEEcCCCC-CC--------CC
Q 023246          142 --CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEK-------TVKLWAPMPT-DF--------PP  199 (285)
Q Consensus       142 --dg~v~vwd~~~~~~~~~~~----~h~~~v~~~~~~p~~~~l~t~~~d~-------~i~iwd~~~~-~~--------~~  199 (285)
                        +-.+.+.|..+|+.+.+..    -|+..|..|++.++|..++..-..|       .|-+++.... ..        ..
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR  214 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence              3357777888899887643    3778899999999987766655444       2444443321 11        11


Q ss_pred             CCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEeccccccee
Q 023246          200 LPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                      +.++...|   .. ..+.. ..++.-..+.+.+||..+++.+..
T Consensus       215 l~~Y~gSI---a~-~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  215 LNGYIGSI---AA-DRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             hCCceEEE---EE-eCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence            22222222   21 22333 445666679999999988866544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.2e-06  Score=73.40  Aligned_cols=142  Identities=13%  Similarity=0.170  Sum_probs=101.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..+.|++++.   ..|+-|+.+|.|++++....-                ... ..|...      ..+|+++++++ ||
T Consensus        40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~----------------~~~-~~~s~~------~~~Gey~asCS~DG   93 (846)
T KOG2066|consen   40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGNP----------------KTN-FDHSSS------ILEGEYVASCSDDG   93 (846)
T ss_pred             hHHHHHHhhc---ceeeeccccceEEEEecCCcc----------------ccc-cccccc------ccCCceEEEecCCC
Confidence            4456666655   689999999999999986331                111 223332      56789999976 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-----CcEEEEecCCCeEEEEecC---CCc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GGK  154 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~vwd~~---~~~  154 (285)
                      +|.|..+-+.                +...++.-+   .++.++++ +|+     .+.+++|+..| +.++.-+   ...
T Consensus        94 kv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~  152 (846)
T KOG2066|consen   94 KVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD  152 (846)
T ss_pred             cEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence            9999998776                454544433   33899997 887     56899999998 7777633   122


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      .+ .+..-.++|.++.|.  |+++|-++.+| |++||...++
T Consensus       153 ~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~  190 (846)
T KOG2066|consen  153 SV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ  190 (846)
T ss_pred             ce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence            22 455567899999995  67888888776 8999987765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.64  E-value=3.4e-06  Score=63.31  Aligned_cols=146  Identities=10%  Similarity=-0.036  Sum_probs=97.1

Q ss_pred             EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc--ceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCC
Q 023246           18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI--HITGLAYSNTSELLIS-YNDELVYLFEKNMGLG   94 (285)
Q Consensus        18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~   94 (285)
                      -+..++.|.++++.++..+...              .   .-|..  .+.+++++++++++++ |....|..|.+.... 
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~--------------~---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s-  191 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNK--------------F---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES-  191 (344)
T ss_pred             ceeeccCCcceeEEEEecCccc--------------c---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc-
Confidence            4455666777777776644210              0   11222  3788999999999888 678889999887541 


Q ss_pred             CCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EE----EEecccccceEe
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR----LMVGDRHVVNQL  169 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~----~~~~h~~~v~~~  169 (285)
                                   .....+....+. ..-.+..| +.....+|++.+||.+.|||++.-.. ..    +-..|.+.+..+
T Consensus       192 -------------ey~~~~~~a~t~-D~gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c  256 (344)
T KOG4532|consen  192 -------------EYIENIYEAPTS-DHGFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVC  256 (344)
T ss_pred             -------------ceeeeeEecccC-CCceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEE
Confidence                         012222222221 11455665 88899999999999999999886432 22    223588999999


Q ss_pred             EEcCCCCe--EEEEecCCcEEEEcCCCCC
Q 023246          170 EPHPHIPM--FATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       170 ~~~p~~~~--l~t~~~d~~i~iwd~~~~~  196 (285)
                      .|+|-|..  |+..-.-+.+.+.|++...
T Consensus       257 ~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  257 RFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EecCCCcceEEEEecCcceEEEEEcccCc
Confidence            99987765  4444445789999998775

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=5.5e-07  Score=72.06  Aligned_cols=212  Identities=13%  Similarity=0.066  Sum_probs=140.4

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      |++..|+-+....  ..++.+++.||.++.|--..-.-.          . -..+. ..|...|.+++.+-++.++++ +
T Consensus         7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGv----------E-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~   72 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGV----------E-FVKHF-RAHLGVILSLAVSYDGWLFRSVE   72 (558)
T ss_pred             cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccce----------e-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence            7888898887777  379999999999999976531110          0 12222 578888999999999999999 5


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC---CcEEEEecCCCeEEEEecCCC--
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGG--  153 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~--  153 (285)
                      . |..++++|+..-                ..+..++...-+..+..+.  ++.   ....++.-.++.+.++|-...  
T Consensus        73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv~--skGd~~s~IAVs~~~sg~i~VvD~~~d~~  134 (558)
T KOG0882|consen   73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWVT--SKGDKISLIAVSLFKSGKIFVVDGFGDFC  134 (558)
T ss_pred             CcccceeEEEeecc----------------chhhhcccccCCCceEEec--CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence            5 899999999765                2222222211111122111  222   133344567899999996533  


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC------CC-CCCCC--------CcccceeeccccCCCc
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------DF-PPLPD--------NAEKIMKANKQGREDH  218 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~------~~-~~~~~--------~~~~~~~~~~~~~~~~  218 (285)
                      +....-.-|..+|..+.+.|.+..+++....|.|..|.....      ++ ..++.        ...........++.+.
T Consensus       135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~  214 (558)
T KOG0882|consen  135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA  214 (558)
T ss_pred             ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence            344444569999999999999999999999999999998741      11 11110        0111111222234455


Q ss_pred             eEEEeCCCCeEEEEEecccccceeEe
Q 023246          219 SRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      .+.+.++|..|+++++.++...+.++
T Consensus       215 qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  215 QISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             cccccCcccEEEEEEeccchhhhhhh
Confidence            77788899999999999998777664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=8.6e-08  Score=51.12  Aligned_cols=38  Identities=24%  Similarity=0.688  Sum_probs=34.8

Q ss_pred             CCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246          109 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  149 (285)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd  149 (285)
                      +++.++.+|...  |.+++| +|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence            467889999977  999997 99999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.58  E-value=1.8e-05  Score=65.68  Aligned_cols=214  Identities=8%  Similarity=-0.009  Sum_probs=119.0

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..+++++.+|.|..+|..+++..........+            ..   .+.. .++..++.+.++.++.+|..++    
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~------------~~---~p~v-~~~~v~v~~~~g~l~ald~~tG----  125 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERL------------SG---GVGA-DGGLVFVGTEKGEVIALDAEDG----  125 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCc------------cc---ceEE-cCCEEEEEcCCCEEEEEECCCC----
Confidence            57888889999999999999854332222110            11   1111 1334444456999999999877    


Q ss_pred             CCCCCCccccCCCCceEeecccCceeeee-EEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc-----eEeE
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-----NQLE  170 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~~~  170 (285)
                                  +.+........   +.+ ...   .+..++.++.+|.|+.||.++|+.+..+.......     ....
T Consensus       126 ------------~~~W~~~~~~~---~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~  187 (377)
T TIGR03300       126 ------------KELWRAKLSSE---VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV  187 (377)
T ss_pred             ------------cEeeeeccCce---eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence                        34333322111   221 111   24466777889999999999999887765432211     1111


Q ss_pred             EcCCCCeEEEEecCCcEEEEcCCCCCCC-CCC--CCc--c---cceeeccc-cCCCceEEEeCCCCeEEEEEecccccce
Q 023246          171 PHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP--DNA--E---KIMKANKQ-GREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       171 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~--~~~--~---~~~~~~~~-~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      ..  +..++.+..++.+..+|+++++.. +..  ...  .   ........ ...+..++..+.++.++.||..+++.+-
T Consensus       188 ~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W  265 (377)
T TIGR03300       188 IA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW  265 (377)
T ss_pred             EE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence            11  246677778899999999877531 111  000  0   00000000 0123467777889999999988775543


Q ss_pred             eEeee------ccccccCCCCCcCeEEEeecCCCC
Q 023246          242 YRERR------YNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       242 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .....      .....+-....++.+++++..+|+
T Consensus       266 ~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       266 KRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             eeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence            32211      011122222345667777776664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.57  E-value=1.1e-05  Score=66.78  Aligned_cols=215  Identities=12%  Similarity=0.044  Sum_probs=118.9

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..++.++.++.+..+|..+++........                ..+.+.-...++..++...++.|+.||..++    
T Consensus       106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~----------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG----  165 (377)
T TIGR03300       106 GLVFVGTEKGEVIALDAEDGKELWRAKLS----------------SEVLSPPLVANGLVVVRTNDGRLTALDAATG----  165 (377)
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeeeeccC----------------ceeecCCEEECCEEEEECCCCeEEEEEcCCC----
Confidence            57778888999999999988754322111                1111111112344555566999999999887    


Q ss_pred             CCCCCCccccCCCCceEeecccCceee---eeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc----c---c
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTV---KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH----V---V  166 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~----~---v  166 (285)
                                  +.+-.+.........   .....   .+..++.+..++.+..+|.++|+.+........    .   .
T Consensus       166 ------------~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~  230 (377)
T TIGR03300       166 ------------ERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL  230 (377)
T ss_pred             ------------ceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence                        343333322211000   11111   124677788899999999999988765431100    0   0


Q ss_pred             eEeEEcC--CCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          167 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       167 ~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ..+.-+|  .+..+..++.+|.+..||+++++.. ... ... ...   ....+..++.++.+|.++.+|..+++.+-..
T Consensus       231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~-~~~---p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS-YQG---PAVDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC-ccC---ceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence            0111111  2456777888999999999877632 111 100 000   0113446777889999999999877554322


Q ss_pred             ee-e--------ccccccCCCCCcCeEEEeecCCCCC
Q 023246          244 ER-R--------YNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       244 ~~-~--------~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      .. .        .....+...+.+|.+++++..+|+.
T Consensus       306 ~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       306 DELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             ccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence            11 0        0111222334556677777665543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=2.7e-05  Score=64.33  Aligned_cols=139  Identities=8%  Similarity=0.096  Sum_probs=95.3

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-----
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-----   80 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-----   80 (285)
                      +-+.|||.| .+|+|--.-| |.+|--.+-..              ...  ..|. .|.-+.|||..++|++ +.     
T Consensus       214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r--------------~~R--F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~  274 (698)
T KOG2314|consen  214 TYVRWSPKG-TYLVTFHKQG-IALWGGESFDR--------------IQR--FYHP-GVQFIDFSPNEKYLVTYSPEPIIV  274 (698)
T ss_pred             eeEEecCCc-eEEEEEeccc-eeeecCccHHH--------------HHh--ccCC-CceeeecCCccceEEEecCCcccc
Confidence            458899975 8999877654 68896554321              111  2344 5889999999999998 41     


Q ss_pred             C------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           81 D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        81 d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      +      ..++|||+.++                ...+.|.....+..+.-+--|+.+++|++.-.. ..|.||+...-.
T Consensus       275 ~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~  337 (698)
T KOG2314|consen  275 EEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM  337 (698)
T ss_pred             CcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee
Confidence            1      56999999999                577777764443334444336999999988765 678899987644


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEE
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATC  181 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~  181 (285)
                      ++..-.-.-..|....|+|.+..||--
T Consensus       338 lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  338 LLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             eecccccCCccccCcccCCCcceEEEE
Confidence            432222234678899999997776643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=4.7e-06  Score=65.98  Aligned_cols=75  Identities=7%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-   80 (285)
                      ..-|..++|+|.+.-++..++.+.+|+|.|+++...              .... ..| ..+++++|.-+.. ++.+|. 
T Consensus       193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--------------vssy-~a~-~~~wSC~wDlde~h~IYaGl~  256 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--------------VSSY-IAY-NQIWSCCWDLDERHVIYAGLQ  256 (463)
T ss_pred             chhhhhhccCccccceeeeeccCceEEEEeccccee--------------eehe-ecc-CCceeeeeccCCcceeEEecc
Confidence            446889999998745899999999999999998752              2222 344 6899999998775 666664 


Q ss_pred             CCcEEEEEcCCCC
Q 023246           81 DELVYLFEKNMGL   93 (285)
Q Consensus        81 d~~i~iwd~~~~~   93 (285)
                      .|.|.|||++...
T Consensus       257 nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  257 NGMVLVYDMRQPE  269 (463)
T ss_pred             CceEEEEEccCCC
Confidence            9999999998763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.53  E-value=0.00018  Score=54.82  Aligned_cols=208  Identities=12%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEE
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF   87 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iw   87 (285)
                      ++.+++| .+|| .-+|..|.|-..+..-..       .+   ....+.+.-...-+.++||||+.+||.+ +.|+|++|
T Consensus         3 ~~~~~~G-k~lA-i~qd~~iEiRsa~Ddf~s-------i~---~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf   70 (282)
T PF15492_consen    3 LALSSDG-KLLA-ILQDQCIEIRSAKDDFSS-------II---GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF   70 (282)
T ss_pred             eeecCCC-cEEE-EEeccEEEEEeccCCchh-------ee---EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence            5566754 5555 456777877766543110       00   0111112223345789999999999986 59999999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-----CcEEEEecCCCeEEEEecCCC-----ceEE
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR  157 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~v~vwd~~~~-----~~~~  157 (285)
                      |+....           +-.......+.+. ....|.++.|..+.     ...|+.-..+|.++-|-+..+     +..+
T Consensus        71 dl~g~~-----------lf~I~p~~~~~~d-~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h  138 (282)
T PF15492_consen   71 DLMGSE-----------LFVIPPAMSFPGD-LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH  138 (282)
T ss_pred             ecccce-----------eEEcCcccccCCc-cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence            997541           0000000111111 11226666663322     224666667788776665322     2233


Q ss_pred             EEe--c-ccccceEeEEcCCCCeEEEEe-cCC----------cEEEEcCCCCCC---------------------CCCC-
Q 023246          158 LMV--G-DRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTDF---------------------PPLP-  201 (285)
Q Consensus       158 ~~~--~-h~~~v~~~~~~p~~~~l~t~~-~d~----------~i~iwd~~~~~~---------------------~~~~-  201 (285)
                      ++.  . +...|.++.++|..+.|+.|| ...          -+.-|.+-.+..                     ..+. 
T Consensus       139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence            332  2 357899999999988866665 222          245565422110                     0000 


Q ss_pred             -------CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          202 -------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       202 -------~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                             ......+-....++++..+++..-+|.|.+|++.+-.+.
T Consensus       219 ~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  219 FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence                   001111122223556778889999999999998876554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.52  E-value=0.00021  Score=57.76  Aligned_cols=102  Identities=8%  Similarity=-0.028  Sum_probs=70.6

Q ss_pred             CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--e---------cCCcEEEEEcCCCCC
Q 023246           26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--Y---------NDELVYLFEKNMGLG   94 (285)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~---------~d~~i~iwd~~~~~~   94 (285)
                      ++|.+.|..+++.+..              +..+....  .+ ++|+++.|..  .         .+..|.+||..+.  
T Consensus        27 ~~v~ViD~~~~~v~g~--------------i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--   87 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGM--------------TDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--   87 (352)
T ss_pred             ceEEEEECCCCEEEEE--------------EEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--
Confidence            8999999998874322              21222222  34 9999985444  4         4688999999987  


Q ss_pred             CCCCCCCCccccCCCCceEeecccCc-----eeeeeEEEecCCCcEEEEec-C-CCeEEEEecCCCceEEEEec
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNS-----QTVKGVNFFGPNDEYVMSGS-D-CGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~-~-dg~v~vwd~~~~~~~~~~~~  161 (285)
                                    +.+..+.....+     .....+++ +|+|++++... . +..|.+.|+.+++.+.++..
T Consensus        88 --------------~~~~~i~~p~~p~~~~~~~~~~~~l-s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        88 --------------LPIADIELPEGPRFLVGTYPWMTSL-TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             --------------cEEeEEccCCCchhhccCccceEEE-CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence                          566555532211     11335665 99999998766 3 79999999999999988874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.51  E-value=2e-05  Score=60.87  Aligned_cols=183  Identities=10%  Similarity=0.060  Sum_probs=108.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..+++++.++.|..||..+|+.......+.++.            ..    ....++.+++...++.|+.+|..++    
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~------------~~----~~~~~~~v~v~~~~~~l~~~d~~tG----   96 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS------------GA----PVVDGGRVYVGTSDGSLYALDAKTG----   96 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSSCGG------------SG----EEEETTEEEEEETTSEEEEEETTTS----
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeecccccc------------ce----eeecccccccccceeeeEecccCCc----
Confidence            567777899999999999998543332221111            11    2333445555567889999998887    


Q ss_pred             CCCCCCccccCCCCceEe-ecccCce---eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc------
Q 023246           97 PLSLSPEDLQKREEPQVY-SGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV------  166 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~-~~~~~~~---~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v------  166 (285)
                                  +.+... .......   ......+   .+..++.+..++.|..+|+++|+.+..........      
T Consensus        97 ------------~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen   97 ------------KVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS  161 (238)
T ss_dssp             ------------CEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred             ------------ceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence                        454442 2221110   1222322   37778888889999999999999988886543221      


Q ss_pred             -----eEeEEcCCCCeEEEEecCCc-EEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          167 -----NQLEPHPHIPMFATCGIEKT-VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       167 -----~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                           ..+.+. ++ .+..++.++. +.+ |+.+++.. +..........  ....+..++..+.++.|..||+.+++..
T Consensus       162 ~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  162 FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             ecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence                 222222 34 6666666775 555 98887632 11111111111  1223446666668999999999988653

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=2.9e-06  Score=72.57  Aligned_cols=185  Identities=16%  Similarity=0.199  Sum_probs=118.5

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c---C------CcEEE
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N---D------ELVYL   86 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~---d------~~i~i   86 (285)
                      .++|.|...|+|.++|+.++..               ..-+.-|+..|.++.|-....++..+ +   +      +.+.+
T Consensus       438 pLvAvGT~sGTV~vvdvst~~v---------------~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~v  502 (1062)
T KOG1912|consen  438 PLVAVGTNSGTVDVVDVSTNAV---------------AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVV  502 (1062)
T ss_pred             eeEEeecCCceEEEEEecchhh---------------hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEE
Confidence            4889999999999999998852               22226789999999998877655433 1   2      34678


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeec--ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      -|++++                 .-+.|++  .....+|..+.. +..++|++..-.+.-+-+||+++..+++.+...-.
T Consensus       503 tdLrtG-----------------lsk~fR~l~~~despI~~irv-S~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P  564 (1062)
T KOG1912|consen  503 TDLRTG-----------------LSKRFRGLQKPDESPIRAIRV-SSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP  564 (1062)
T ss_pred             EEcccc-----------------cccccccCCCCCcCcceeeee-cccCceEEEEecccchHHHhhccchHHHHHhhcCC
Confidence            888887                 3334442  222345999996 89999999999999999999988777655543333


Q ss_pred             cceEeEEc-CCCC----------------eEEEEecCCcEEEEcCCCCC--CC-------CCCCCcccceeeccccCCCc
Q 023246          165 VVNQLEPH-PHIP----------------MFATCGIEKTVKLWAPMPTD--FP-------PLPDNAEKIMKANKQGREDH  218 (285)
Q Consensus       165 ~v~~~~~~-p~~~----------------~l~t~~~d~~i~iwd~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~  218 (285)
                      .++.+.|+ |.-+                ..++.+.  ..+++.+....  ..       .............|.   +.
T Consensus       565 ~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~--es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk---~d  639 (1062)
T KOG1912|consen  565 LITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSV--ESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK---DD  639 (1062)
T ss_pred             cEEEEeecccCCCCcccccchhhhhhhhceeeeccc--cchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc---CC
Confidence            48888887 4322                2333331  22233221110  00       011111112233332   34


Q ss_pred             eEEEeCCCCeEEEEEeccccc
Q 023246          219 SRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      .++.|..+|.+.+||+..++.
T Consensus       640 ~lv~GD~~GNl~~WDlg~R~S  660 (1062)
T KOG1912|consen  640 ILVVGDVEGNLVVWDLGRRQS  660 (1062)
T ss_pred             eeEeecccCceeEEecccccc
Confidence            889999999999999876643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=8.9e-06  Score=69.85  Aligned_cols=149  Identities=20%  Similarity=0.151  Sum_probs=108.3

Q ss_pred             ceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           63 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      .+++++++  +++|+-|. +|.|++++.+..                 . .+...|...         +.+|.++++|+.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------~-~~~~~~s~~---------~~~Gey~asCS~   91 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------P-KTNFDHSSS---------ILEGEYVASCSD   91 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCc-----------------c-ccccccccc---------ccCCceEEEecC
Confidence            45555554  35777776 999999998754                 2 232333321         568999999999


Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCC-----CCeEEEEecCCcEEEEcCC---CCCCCCCCCCcccceeeccc
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH-----IPMFATCGIEKTVKLWAPM---PTDFPPLPDNAEKIMKANKQ  213 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~t~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~  213 (285)
                      ||.|.+..+-+.+...++.- ..++.+++++|+     .+++++||..| +.++.-+   ......+....+.+.++.|.
T Consensus        92 DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen   92 DGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             CCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            99999999988887776664 358999999998     45799999888 7777632   11222345566778888886


Q ss_pred             cCCCceEEEeCCCCeEEEEEecccccceeEeee
Q 023246          214 GREDHSRITLTPDVIMHVLRLQRRQTLAYRERR  246 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~  246 (285)
                      ..    +++...|--++|+|...++.+..+++.
T Consensus       170 g~----lIAWand~Gv~vyd~~~~~~l~~i~~p  198 (846)
T KOG2066|consen  170 GN----LIAWANDDGVKVYDTPTRQRLTNIPPP  198 (846)
T ss_pred             Cc----EEEEecCCCcEEEeccccceeeccCCC
Confidence            64    778888888999999998887776443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=1.5e-07  Score=81.40  Aligned_cols=150  Identities=11%  Similarity=0.160  Sum_probs=107.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN--   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~--   80 (285)
                      ..-+|++|+-+ .+.|+.|+..|.|++|++.+|..              .... .+|..+|+-+.=+.+|.+..+ ++  
T Consensus      1102 ~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~--------------e~s~-ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSM--------------EESV-NCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             cceeeEEeecC-CceEEeeeccceEEEEEccCccc--------------cccc-cccccccccccccCCcceeeeecccc
Confidence            35689999996 59999999999999999999962              2222 789999999999999985554 32  


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      .-...+|++....               ...+.|..      -.++.| +...++-+.|.......+||+.++.++.++.
T Consensus      1166 ~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1166 SPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred             CchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence            4467899987542               34455543      345666 5555555666666788999999998776632


Q ss_pred             ----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          161 ----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       161 ----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                          +.+-.-+...|+|+...++   .||  .+||.+...
T Consensus      1224 t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPE 1258 (1516)
T ss_pred             CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHH
Confidence                1122336788999988765   355  489987653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=0.00017  Score=65.16  Aligned_cols=216  Identities=11%  Similarity=0.133  Sum_probs=126.1

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..|.++.|.-+. +.++.+..+|.|.+-|..+....                +...-...|.+++||||++.++-.+ .+
T Consensus        69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e----------------ivg~vd~GI~aaswS~Dee~l~liT~~~  131 (1265)
T KOG1920|consen   69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE----------------IVGNVDNGISAASWSPDEELLALITGRQ  131 (1265)
T ss_pred             cceEEEEEeccc-ceEEEEecCCcEEEEccccccee----------------eeeeccCceEEEeecCCCcEEEEEeCCc
Confidence            468888888864 78888899999999988776531                1133466899999999999887754 56


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCC--------CCceEeecccC-------------------ceeeeeEEEecCCCcE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKR--------EEPQVYSGHRN-------------------SQTVKGVNFFGPNDEY  135 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~~  135 (285)
                      ++.+.+-. -.......+.....+..        +.-..|++...                   ...=..++| --+|++
T Consensus       132 tll~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~  209 (1265)
T KOG1920|consen  132 TLLFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEY  209 (1265)
T ss_pred             EEEEEecc-ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcE
Confidence            66655441 11000011100000000        00111221110                   001234774 889999


Q ss_pred             EEE-----ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe---cCCcEEEEcCCCCCC----CCCCCC
Q 023246          136 VMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF----PPLPDN  203 (285)
Q Consensus       136 l~~-----~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~----~~~~~~  203 (285)
                      +++     ......+++||.+ |.+-..-....+.=.+++|-|.|..+++-.   .|..|.++..++-.-    ..++..
T Consensus       210 fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             EEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence            988     3334899999988 544333333334456799999999988774   456799998765432    223333


Q ss_pred             cccceeeccccCCCceEEE---eCCCCeEEEEEecccccc
Q 023246          204 AEKIMKANKQGREDHSRIT---LTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~---~s~d~~i~vwd~~~~~~~  240 (285)
                      ...+..+.|.. ++..++.   ......|++|-+.+.+-.
T Consensus       289 e~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  289 EKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             ccchheeeecC-CCCceeeeecccccceEEEEEecCeEEE
Confidence            33355555533 3444433   334455999988775433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=1.4e-06  Score=71.77  Aligned_cols=155  Identities=11%  Similarity=0.186  Sum_probs=101.1

Q ss_pred             ceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-------CceEEEEecccccceEeEEcCCCCeEEEEec
Q 023246          111 PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~  183 (285)
                      +..|.+|+..  |..+.- -.+.+.+++++.|.+|++|.++.       ..+..++..|..+|.++.|-.+.++++++  
T Consensus       728 L~nf~GH~~~--iRai~A-idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGHQEK--IRAIAA-IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCcHHH--hHHHHh-cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence            4567788876  877764 45677899999999999999763       33667888999999999999988888766  


Q ss_pred             CCcEEEEcCCCCC-CCCCCC--CcccceeeccccC-CCceEEEe-CCCCeEEEEEecccccceeE---------------
Q 023246          184 EKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGR-EDHSRITL-TPDVIMHVLRLQRRQTLAYR---------------  243 (285)
Q Consensus       184 d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-s~d~~i~vwd~~~~~~~~~~---------------  243 (285)
                      |+-|++||+--+. +.++..  .....-.+.+... +..+++++ +...+++++|.+...-....               
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            7899999985444 222211  1112222222233 34455666 67899999998875433222               


Q ss_pred             eeeccccccCCCCCcCeEEEeecCCCC
Q 023246          244 ERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ...+.+..++..-..|.+..++...|.
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCc
Confidence            222334444444445566666666655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.36  E-value=8.9e-05  Score=57.20  Aligned_cols=181  Identities=12%  Similarity=0.085  Sum_probs=99.8

Q ss_pred             CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCcc
Q 023246           25 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED  104 (285)
Q Consensus        25 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~  104 (285)
                      +|+|..||..+++.+......            .... ...+.....++.+++...++.|+.||..++            
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~------------~~~~-~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------   56 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG------------PGIG-GPVATAVPDGGRVYVASGDGNLYALDAKTG------------   56 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS------------SSCS-SEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred             CCEEEEEECCCCCEEEEEECC------------CCCC-CccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence            678888998888744332110            0111 122223334445555567999999999888            


Q ss_pred             ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE-ecccc---cceEeEEcCCCCeEEE
Q 023246          105 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDRH---VVNQLEPHPHIPMFAT  180 (285)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~h~~---~v~~~~~~p~~~~l~t  180 (285)
                          +.+..+......  .....   ..+..++.++.++.++.+|..+|+.+... .....   ..........+..++.
T Consensus        57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (238)
T PF13360_consen   57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV  127 (238)
T ss_dssp             ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred             ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence                565555542211  11111   23445566667889999999999999884 32211   1122223334777888


Q ss_pred             EecCCcEEEEcCCCCCC---CCCCCCc--ccc-----eeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          181 CGIEKTVKLWAPMPTDF---PPLPDNA--EKI-----MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       181 ~~~d~~i~iwd~~~~~~---~~~~~~~--~~~-----~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      +..++.|..+|++++++   .......  ..+     ........++ .++..+.++.+..+|+.+++.+
T Consensus       128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~  196 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL  196 (238)
T ss_dssp             EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE
T ss_pred             EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE
Confidence            88899999999988764   1121111  000     0011111122 5666666765333388887744

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.34  E-value=1.7e-05  Score=66.26  Aligned_cols=139  Identities=13%  Similarity=0.132  Sum_probs=79.3

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY   85 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~   85 (285)
                      ...++++|.+ +.++. +.||.-.||.....+                    ....+......|.+.+++.+--...+|.
T Consensus        35 p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I~   92 (443)
T PF04053_consen   35 PQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTIK   92 (443)
T ss_dssp             -SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-EE
T ss_pred             CeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeEE
Confidence            4679999965 66666 667888888843322                    1223455578899966655545688899


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccccc
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV  165 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  165 (285)
                      |+.--..                .....+.... .  +..+  +.  |..|...+. +.|.+||..+++.++.+...  +
T Consensus        93 I~kn~~~----------------~~~k~i~~~~-~--~~~I--f~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~  146 (443)
T PF04053_consen   93 IYKNFKN----------------EVVKSIKLPF-S--VEKI--FG--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--A  146 (443)
T ss_dssp             EEETTEE-----------------TT-----SS----EEEE--E---SSSEEEEET-TEEEEE-TTT--EEEEESS---E
T ss_pred             EEEcCcc----------------ccceEEcCCc-c--cceE--Ec--CcEEEEECC-CCEEEEEhhHcceeeEEecC--C
Confidence            9743222                2223333221 1  4444  23  777766654 48999999999999998743  4


Q ss_pred             ceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          166 VNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      |..+.|++++.+++..+.+ .+.+++.+
T Consensus       147 vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             CcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            8999999999999888855 67777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.33  E-value=9.1e-05  Score=63.04  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEc
Q 023246           11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEK   89 (285)
Q Consensus        11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~   89 (285)
                      ++.. ..+++.|+.-|.+.+|+-..++....              ...+-.+.+..+..+++..++|.|. .|.|.++.+
T Consensus        41 ~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~--------------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   41 VDAT-EEYLAMGSSAGSVYLYNRHTGEMRKL--------------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             eecC-CceEEEecccceEEEEecCchhhhcc--------------cccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence            3443 37999999999999999887763211              1122344566677888877777764 899999988


Q ss_pred             CCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246           90 NMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~  152 (285)
                      +....+             .....-.   .|..  .|++++| ++++..+++|...|.|.+-.+.+
T Consensus       106 ~~~~p~-------------~~~~~t~~d~~~~~--rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  106 NKELPR-------------DLDYVTPCDKSHKC--RVTALEW-SKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hccCCC-------------cceeeccccccCCc--eEEEEEe-cccccEEeecCCCceEEEEEech
Confidence            764210             1111111   1343  4999995 99999999999999998887765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.32  E-value=1.3e-05  Score=69.86  Aligned_cols=180  Identities=10%  Similarity=0.043  Sum_probs=119.6

Q ss_pred             CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCC
Q 023246           15 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGL   93 (285)
Q Consensus        15 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~   93 (285)
                      ++..++.|+.-..+..+|+.+.+....            .   .-....|+-++  .+++++.+|. .|+|.+-|.++. 
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~-  207 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRT------------T---NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF-  207 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeee------------e---eccCCceEEEE--ecCcEEEeecccceEEeecCCcC-
Confidence            345677777777788888887653211            0   11122233333  4567888875 999999999887 


Q ss_pred             CCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---------CCeEEEEecCCCceEEEEecccc
Q 023246           94 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                                     +.++++..|.+.  |.++   +-.|+.|++++.         |..|+|||++.-+.+.-+.-+.+
T Consensus       208 ---------------~~iht~~aHs~s--iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~  267 (1118)
T KOG1275|consen  208 ---------------ETIHTFDAHSGS--ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG  267 (1118)
T ss_pred             ---------------ceeeeeeccccc--eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC
Confidence                           789999999976  7765   457889988875         66789999987766655554444


Q ss_pred             cceEeEEcCCCCe-EEEEecCCcEEEEcC---CCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          165 VVNQLEPHPHIPM-FATCGIEKTVKLWAP---MPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       165 ~v~~~~~~p~~~~-l~t~~~d~~i~iwd~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      + .-+.|+|.-.. ++.++..|...+-|.   ......... ......+.....++.+..++.+..+|.|.+|.
T Consensus       268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             c-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            3 55778886544 788888899999994   333221111 11122122223345566788899999999997

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.29  E-value=8.5e-05  Score=60.81  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=105.7

Q ss_pred             CCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           60 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        60 h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      -.-++..++|||.|.+|++..-..|.+|.-...                ..+..+....    |..+.| +|+++||.+=
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~~~~----V~~~~f-SP~~kYL~tw   89 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFRHPD----VKYLDF-SPNEKYLVTW   89 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccch----------------hheeeeecCC----ceeccc-Ccccceeeee
Confidence            456889999999999999988888999998766                4445554332    888997 9999999985


Q ss_pred             cCC---------------CeEEEEecCCCceEEEEeccccc--ce-EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC
Q 023246          140 SDC---------------GHLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP  201 (285)
Q Consensus       140 ~~d---------------g~v~vwd~~~~~~~~~~~~h~~~--v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~  201 (285)
                      +..               ..+.+||..++..+..+.....+  .. -+.|+-+.+++|=.. ...++|+++ +..+...+
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p  167 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHP  167 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCc
Confidence            543               35999999999999998865554  44 678888888755442 346899997 33322111


Q ss_pred             CC---cccceeeccccC-CCceEEEe-----CCCCeEEEEEecccccce
Q 023246          202 DN---AEKIMKANKQGR-EDHSRITL-----TPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       202 ~~---~~~~~~~~~~~~-~~~~~~~~-----s~d~~i~vwd~~~~~~~~  241 (285)
                      -+   ...+....++.. +...++..     ...+++++|.+.....+.
T Consensus       168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~  216 (561)
T COG5354         168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV  216 (561)
T ss_pred             hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee
Confidence            11   122223322222 22223433     345888888887654443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.28  E-value=0.00039  Score=57.13  Aligned_cols=204  Identities=10%  Similarity=-0.010  Sum_probs=123.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCC---------------cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceE-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-   65 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-   65 (285)
                      +...|.-+.|+|. +.+|.+-+..+               .+.+||+.++..+..+..         .    ......+ 
T Consensus        70 ~~~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~---------~----~q~~~~Wp  135 (561)
T COG5354          70 RHPDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNG---------I----SQPYLGWP  135 (561)
T ss_pred             ecCCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccc---------c----CCcccccc
Confidence            4456778899996 48998876544               489999998875332211         0    0111133 


Q ss_pred             EEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc--EEEE-----
Q 023246           66 GLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMS-----  138 (285)
Q Consensus        66 ~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~-----  138 (285)
                      -+.|+-+..++|=-....++|+++.....             ....+.++  .  ..|....+ +|.++  .|+.     
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~-------------~~p~~~lr--~--~gi~dFsi-sP~~n~~~la~~tPEk  197 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEITDNIE-------------EHPFKNLR--P--VGILDFSI-SPEGNHDELAYWTPEK  197 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEecCCccc-------------cCchhhcc--c--cceeeEEe-cCCCCCceEEEEcccc
Confidence            67888888776655566789999722200             01111221  1  22666665 66532  2222     


Q ss_pred             ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-----------cCCcEEEEcCCCCCCCCCCCCcccc
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-----------IEKTVKLWAPMPTDFPPLPDNAEKI  207 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~  207 (285)
                      .+..+++++|.+..+..+.+-.--.-.=..+.|.+.|++++.--           ....+.+++++...+.......+++
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pV  277 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPV  277 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccc
Confidence            56788999999987666554332233334688999998844221           1235788888765554433456777


Q ss_pred             eeeccccCCCce-EEEeCCCCeEEEEEeccc
Q 023246          208 MKANKQGREDHS-RITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       208 ~~~~~~~~~~~~-~~~~s~d~~i~vwd~~~~  237 (285)
                      ....|.....+. +++|..+..+.++|++..
T Consensus       278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             eeeeecccCCceeEEecccccceeecccccc
Confidence            777775555443 455677888999998776

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=1e-05  Score=67.31  Aligned_cols=71  Identities=11%  Similarity=0.253  Sum_probs=59.4

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +.++++ +|+...++.|+.||.|.+||...+...  +....-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       262 v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  262 VICCAR-SPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ceEEec-CcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            888886 999999999999999999998755333  22334567889999999999999999999999986443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=0.00011  Score=60.88  Aligned_cols=110  Identities=18%  Similarity=0.266  Sum_probs=83.7

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-  141 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-  141 (285)
                      .-+-+.|||.|.+|++-...-|.+|--.+-                ..++.|. |.+   +.-+.| +|+.+||++=+. 
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f----------------~r~~RF~-Hp~---Vq~idf-SP~EkYLVT~s~~  270 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQGIALWGGESF----------------DRIQRFY-HPG---VQFIDF-SPNEKYLVTYSPE  270 (698)
T ss_pred             eeeeEEecCCceEEEEEeccceeeecCccH----------------HHHHhcc-CCC---ceeeec-CCccceEEEecCC
Confidence            456789999999999988777999987655                5666665 443   777887 999999998542 


Q ss_pred             ----------CCeEEEEecCCCceEEEEeccc--ccc-eEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          142 ----------CGHLFIWKKKGGKLVRLMVGDR--HVV-NQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       142 ----------dg~v~vwd~~~~~~~~~~~~h~--~~v-~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                                ...+.|||+.+|...+.+....  ..+ .-..||.|++++|--.. ..|.||+...
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps  335 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS  335 (698)
T ss_pred             ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence                      3579999999999988886522  222 33689999999887765 4688887543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00032  Score=61.20  Aligned_cols=198  Identities=11%  Similarity=0.101  Sum_probs=115.0

Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcc-eEEEEEecCCCEEEE-ecC-C----
Q 023246           10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH-ITGLAYSNTSELLIS-YND-E----   82 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~s~~~~~l~s-~~d-~----   82 (285)
                      +|++. +..++.|+.+|.|.+.+-.-..          +..|      ..+... |+.+....+..+|++ +.| +    
T Consensus        30 c~~s~-~~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~   92 (933)
T KOG2114|consen   30 CCSSS-TGSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV   92 (933)
T ss_pred             EEcCC-CceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence            46674 4799999999999888754221          1111      344444 444444444467777 653 3    


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCc---eEee--cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---C-C
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---G-G  153 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~-~  153 (285)
                      .++||++....+..+          ..++   +.+.  ...++.++..++. +.+-+.+|+|-.+|.|..+.-+   . +
T Consensus        93 llkiw~lek~~~n~s----------P~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNS----------PQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EEEEecccccCCCCC----------cceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence            599999976522111          1233   2221  1222344777876 7888999999999999998522   1 2


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                      ....-...-..+|+.+++..+++.++.+.....|.+|.+.+..  ...+..+...+.+......... ++++ .+..+.+
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca-~~e~l~f  239 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICA-GSEFLYF  239 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEe-cCceEEE
Confidence            2121122235799999999888874444455789999997555  2224444444444433222222 3332 3445777


Q ss_pred             EEeccc
Q 023246          232 LRLQRR  237 (285)
Q Consensus       232 wd~~~~  237 (285)
                      |+....
T Consensus       240 Y~sd~~  245 (933)
T KOG2114|consen  240 YDSDGR  245 (933)
T ss_pred             EcCCCc
Confidence            776544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.25  E-value=3.1e-05  Score=64.62  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=57.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      +.+|.|++++|+. ..|+.|+.||+|.+||...+...           +      ..+.-.++.++|+|+|.++++++ .
T Consensus       259 ~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~-----------~------~ka~~~P~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  259 PSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL-----------L------AKAEFIPTLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             CCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee-----------e------eeecccceEEEEcCCCcEEEEEcCC
Confidence            3578899999975 89999999999999999765311           0      12233578899999999998876 6


Q ss_pred             CcEEEEEcCCC
Q 023246           82 ELVYLFEKNMG   92 (285)
Q Consensus        82 ~~i~iwd~~~~   92 (285)
                      |.+.+||+.-.
T Consensus       321 GelQ~FD~ALs  331 (545)
T PF11768_consen  321 GELQCFDMALS  331 (545)
T ss_pred             ceEEEEEeecC
Confidence            99999999754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.23  E-value=4.4e-05  Score=66.74  Aligned_cols=162  Identities=12%  Similarity=0.142  Sum_probs=105.2

Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      |--..+..+|+++.                +..+...-....  +.-++   .+++++.+|...|+|.+-|.++.+.+++
T Consensus       154 g~Q~~li~~Dl~~~----------------~e~r~~~v~a~~--v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht  212 (1118)
T KOG1275|consen  154 GLQEKLIHIDLNTE----------------KETRTTNVSASG--VTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHT  212 (1118)
T ss_pred             chhhheeeeecccc----------------eeeeeeeccCCc--eEEEE---ecCcEEEeecccceEEeecCCcCceeee
Confidence            34555667777665                344433333222  55444   4789999999999999999999999999


Q ss_pred             EecccccceEeEEcCCCCeEEEEec---------CCcEEEEcCCCCCC-CCCCCCcccc-eeeccccCCCceEEEeCCCC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGI---------EKTVKLWAPMPTDF-PPLPDNAEKI-MKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~---------d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~s~d~  227 (285)
                      +.+|++.|.++.  -.|+.|++||.         |..|++||++..+. ..+.-+..+- +..  -+.-...++..+..|
T Consensus       213 ~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf--~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  213 FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF--HPSLTTRLAVTSQSG  288 (1118)
T ss_pred             eeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh--cccccceEEEEeccc
Confidence            999999997654  47889999985         45689999987652 2222122221 111  111223455667777


Q ss_pred             eEEEEE---eccc-----------ccceeEeeeccccccCCCCCcCeEEEee
Q 023246          228 IMHVLR---LQRR-----------QTLAYRERRYNAADFESDEEEGETYLLG  265 (285)
Q Consensus       228 ~i~vwd---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~  265 (285)
                      +..+-|   +.+.           ..+..+..++++..++.++.+|.|-++.
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            777766   2222           2244556777777777777777776665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.21  E-value=1.8e-05  Score=67.08  Aligned_cols=135  Identities=13%  Similarity=0.089  Sum_probs=93.1

Q ss_pred             CCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEE
Q 023246           59 KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l  136 (285)
                      .|...|.--+++..+++++-| +-|.+++|+-..+                 ....++. -...  +.++...+++..++
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-----------------~~~~~~~~~~~~--~~~~~~vs~~e~lv   91 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-----------------EMRKLKNEGATG--ITCVRSVSSVEYLV   91 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecCch-----------------hhhcccccCccc--eEEEEEecchhHhh
Confidence            355667777788888899887 5899999998776                 2222222 1211  33333348889999


Q ss_pred             EEecCCCeEEEEecCCCceE-----EEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-----CCCCCCCCcc
Q 023246          137 MSGSDCGHLFIWKKKGGKLV-----RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLPDNAE  205 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~-----~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~~~~~  205 (285)
                      +.|+..|.|.++-+..+.+-     ... +.|...|++++|++++..+.+|...|+|.+-.+...     +.+.+.....
T Consensus        92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds  171 (726)
T KOG3621|consen   92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS  171 (726)
T ss_pred             hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence            99999999999987764331     111 247789999999999999999999999998887662     1233333445


Q ss_pred             cceeecc
Q 023246          206 KIMKANK  212 (285)
Q Consensus       206 ~~~~~~~  212 (285)
                      .++.+..
T Consensus       172 ~IVQlD~  178 (726)
T KOG3621|consen  172 EIVQLDY  178 (726)
T ss_pred             ceEEeec
Confidence            5555533

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=3.8e-05  Score=61.90  Aligned_cols=159  Identities=12%  Similarity=0.142  Sum_probs=108.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeC-CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-ecCC---CEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTS---ELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~---~~l~s~   79 (285)
                      .|.+++.+-++ .++.+++. |..++++|+..-....-++...         +    .+   .+.| ...|   ..++.+
T Consensus        55 ~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~---------l----Pg---~a~wv~skGd~~s~IAVs  117 (558)
T KOG0882|consen   55 VILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVD---------L----PG---FAEWVTSKGDKISLIAVS  117 (558)
T ss_pred             HHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhccccc---------C----CC---ceEEecCCCCeeeeEEee
Confidence            45667777875 88999787 9999999998765432222111         1    11   1222 2233   144444


Q ss_pred             --cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-----
Q 023246           80 --NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-----  152 (285)
Q Consensus        80 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-----  152 (285)
                        .++.+.++|-....              .+....-.-|.++  |..+.+ .+.+..+++....|.|..|..+.     
T Consensus       118 ~~~sg~i~VvD~~~d~--------------~q~~~fkklH~sP--V~~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qfP  180 (558)
T KOG0882|consen  118 LFKSGKIFVVDGFGDF--------------CQDGYFKKLHFSP--VKKIRY-NQAGDSAVSIDISGMVEYWSAEGPFQFP  180 (558)
T ss_pred             cccCCCcEEECCcCCc--------------CccceecccccCc--eEEEEe-eccccceeeccccceeEeecCCCcccCc
Confidence              48999999987652              0222333456655  999997 89999999999999999999872     


Q ss_pred             -CceEEEE---------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          153 -GKLVRLM---------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       153 -~~~~~~~---------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                       .+....+         ........++.|+|++..+.+-+.|..|+++..+++++
T Consensus       181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence             1111111         22345678999999999999999999999999988764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.17  E-value=0.00089  Score=52.01  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             EEEEec-CCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC
Q 023246           66 GLAYSN-TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  143 (285)
Q Consensus        66 ~i~~s~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  143 (285)
                      ++.|.+ ++.++++. ..+.|+.|+..++                 ....+....    ...+.+..+++.++++. .. 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~-----------------~~~~~~~~~----~~G~~~~~~~g~l~v~~-~~-   60 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG-----------------EVEVIDLPG----PNGMAFDRPDGRLYVAD-SG-   60 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT-----------------EEEEEESSS----EEEEEEECTTSEEEEEE-TT-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC-----------------eEEEEecCC----CceEEEEccCCEEEEEE-cC-
Confidence            678988 66777775 5899999999875                 333333222    55666623666655554 33 


Q ss_pred             eEEEEecCCCceEEEEec-----ccccceEeEEcCCCCeEEEEecC--------CcEEEEcCCCCCCCCCCCCcccceee
Q 023246          144 HLFIWKKKGGKLVRLMVG-----DRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPTDFPPLPDNAEKIMKA  210 (285)
Q Consensus       144 ~v~vwd~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~  210 (285)
                      .+.++|..+++.......     .....+.+++.|+|+..++....        |.|..++.. ++...+.........+
T Consensus        61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi  139 (246)
T PF08450_consen   61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI  139 (246)
T ss_dssp             CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE
T ss_pred             ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce
Confidence            345559888865433332     34568899999999987776643        446666666 3332221111222223


Q ss_pred             ccccCCC-ceEEEeCCCCeEEEEEecccc
Q 023246          211 NKQGRED-HSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       211 ~~~~~~~-~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .+ .+++ .++++-+..+.|..+++....
T Consensus       140 ~~-s~dg~~lyv~ds~~~~i~~~~~~~~~  167 (246)
T PF08450_consen  140 AF-SPDGKTLYVADSFNGRIWRFDLDADG  167 (246)
T ss_dssp             EE-ETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             EE-CCcchheeecccccceeEEEeccccc
Confidence            22 3334 356688888999999987543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>smart00320 WD40 WD40 repeats

Probab=98.11  E-value=1.2e-05  Score=41.88  Aligned_cols=39  Identities=26%  Similarity=0.476  Sum_probs=34.5

Q ss_pred             CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  191 (285)
                      ++++..+..|...|.++.|+|.+.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.10  E-value=0.00073  Score=56.43  Aligned_cols=214  Identities=7%  Similarity=-0.027  Sum_probs=114.7

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..++.++.+|.+..+|..+++.....+...++           ...+    .. .++..++...++.++-+|..++    
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP----~v-~~~~v~v~~~~g~l~ald~~tG----  180 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRP----VV-SDGLVLVHTSNGMLQALNESDG----  180 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCC----EE-ECCEEEEECCCCEEEEEEccCC----
Confidence            46677888999999999999865443222110           0111    11 1444555556889999999887    


Q ss_pred             CCCCCCccccCCCCceEeecccCcee---eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc-------cc
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV  166 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~-------~v  166 (285)
                                  +.+-.+........   ......   .+..++.++.+|.+..+|..+|+.+........       ..
T Consensus       181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence                        34433332110000   011111   123466677889999999999987765431110       01


Q ss_pred             eEeEEcC--CCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          167 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       167 ~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ..+.-+|  .+..++.++.++.+..+|+.+++.. +.. .. .....   ...+..++.++.++.++.+|..+++.+-..
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~~~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-SVNDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-CccCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            1111122  2456666778899999999877631 111 00 00000   112346677788899999988776543211


Q ss_pred             ee-------ec--cccccCCCCCcCeEEEeecCCCC
Q 023246          244 ER-------RY--NAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       244 ~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ..       +|  ....+...+.+|.+++++..+|+
T Consensus       321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~  356 (394)
T PRK11138        321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR  356 (394)
T ss_pred             cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence            10       00  01112223445667777766654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.09  E-value=0.0016  Score=54.36  Aligned_cols=194  Identities=11%  Similarity=0.001  Sum_probs=106.7

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..++.++.++.+..+|..+++.........+...     . .+...++    .. ++..++...++.+..+|..++    
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----~-~~~~sP~----v~-~~~v~~~~~~g~v~a~d~~~G----  225 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----L-RGESAPA----TA-FGGAIVGGDNGRVSAVLMEQG----  225 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----c-cCCCCCE----EE-CCEEEEEcCCCEEEEEEccCC----
Confidence            4566778889999999999986544332211000     0 1111121    11 334555556888888888776    


Q ss_pred             CCCCCCccccCCCCceEeecccC--ce---eeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEe
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRN--SQ---TVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL  169 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~  169 (285)
                                  +..-.+.....  ..   ....+.. +|  .+..++.++.+|.+..+|..+|+.+.....  .....+
T Consensus       226 ------------~~~W~~~~~~~~~~~~~~~~~~~~~-sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~  290 (394)
T PRK11138        226 ------------QLIWQQRISQPTGATEIDRLVDVDT-TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDF  290 (394)
T ss_pred             ------------hhhheeccccCCCccchhcccccCC-CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCc
Confidence                        22222110000  00   0000110 11  245666777889999999999988765532  112222


Q ss_pred             EEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          170 EPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       170 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ..  .+..+..++.++.+..+|..+++. -+........... . ...+..++.++.+|.++.+|..+++.+....
T Consensus       291 ~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~s-p-~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        291 AV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTA-P-VLYNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             EE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccC-C-EEECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            22  355677778899999999987753 1111101111000 0 0124467888999999999998887665443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.02  E-value=0.00043  Score=62.65  Aligned_cols=171  Identities=11%  Similarity=0.132  Sum_probs=98.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEc----cCCcccC--------Cc--CCCCCccccc---c----ccc------
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDI----RKCHWYS--------PI--SSDTPVDTFC---P----RHL------   56 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~----~~~~~~~--------~~--~~~~~~~~~~---~----~~~------   56 (285)
                      .+|.+++||||. ..++..+.++++.+-+-    -.-+.+.        ..  .-...-..|.   -    ...      
T Consensus       110 ~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  110 NGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             CceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            578999999985 88888888888777543    1111110        00  0000000000   0    000      


Q ss_pred             CC--CCCcceEEEEEecCCCEEEEe-----cC-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE
Q 023246           57 IG--KNNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  128 (285)
Q Consensus        57 ~~--~h~~~v~~i~~s~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  128 (285)
                      ..  .-...=+.|.|-.||+++|++     .+ ..|+|||....                  +........ ..-.+++ 
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~------------------Lns~se~~~-~l~~~Ls-  248 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA------------------LNSTSEPVE-GLQHSLS-  248 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch------------------hhcccCccc-cccccee-
Confidence            00  011223469999999998873     35 78999998722                  111111111 1134566 


Q ss_pred             ecCCCcEEEEec---CCCeEEEEecC---CCceEEEEecccccceEeEEcCCCCeEEE---EecCCcEEEEcCCCC
Q 023246          129 FGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPT  195 (285)
Q Consensus       129 ~~~~~~~l~~~~---~dg~v~vwd~~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~t---~~~d~~i~iwd~~~~  195 (285)
                      |-|.|..+++-.   .|+.|.+|..+   .|+....+.....+|..++|+.++..|+.   ......|++|-+.+.
T Consensus       249 WkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  249 WKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            489998888743   35678888754   23333333444455999999999998777   344445999987654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.00  E-value=0.0041  Score=48.91  Aligned_cols=165  Identities=15%  Similarity=0.136  Sum_probs=91.9

Q ss_pred             EEEcCCCCcEEEEee-----CCCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            9 IVIDPRNPNYFAVGG-----SDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~-----~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      -.||||+ ++|++.-     ..|.|-|||...+ +              ....+ ..|.-....+.+.|+|+.|+.++.|
T Consensus        56 g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~--------------ri~E~-~s~GIGPHel~l~pDG~tLvVANGG  119 (305)
T PF07433_consen   56 GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYR--------------RIGEF-PSHGIGPHELLLMPDGETLVVANGG  119 (305)
T ss_pred             EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcE--------------EEeEe-cCCCcChhhEEEcCCCCEEEEEcCC
Confidence            4689986 6777653     3589999999832 2              11111 4455556678899999877765433


Q ss_pred             c--------EEEEEcCCCCCCCCCCCCCccccCCCCceE--e--ecccCceeeeeEEEecCCCcEEEEecCCCe------
Q 023246           83 L--------VYLFEKNMGLGPSPLSLSPEDLQKREEPQV--Y--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGH------  144 (285)
Q Consensus        83 ~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~------  144 (285)
                      .        .++ ++.+.    ..++..-+..+.+.+..  +  ..|+..  |..+++ ..+|..++..-..|.      
T Consensus       120 I~Thpd~GR~kL-Nl~tM----~psL~~ld~~sG~ll~q~~Lp~~~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~P  191 (305)
T PF07433_consen  120 IETHPDSGRAKL-NLDTM----QPSLVYLDARSGALLEQVELPPDLHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPP  191 (305)
T ss_pred             CccCcccCceec-Chhhc----CCceEEEecCCCceeeeeecCccccccc--eeeEEe-cCCCcEEEEEecCCCCCccCC
Confidence            2        111 11111    01111111111234444  3  124434  888885 777765554433221      


Q ss_pred             -EEEEecCCCceEEEEe-------cccccceEeEEcCCCCeEE-EEecCCcEEEEcCCCCCCCC
Q 023246          145 -LFIWKKKGGKLVRLMV-------GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPP  199 (285)
Q Consensus       145 -v~vwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~~~  199 (285)
                       |.+++.  ++.+..+.       .-.+.+-+|++++++.+++ |+-.-+.+.+||..++.+..
T Consensus       192 Lva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  192 LVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             eEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence             333332  33232222       1235788999999998865 44467799999998887533

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.0017  Score=56.91  Aligned_cols=167  Identities=12%  Similarity=0.164  Sum_probs=102.7

Q ss_pred             CcEEEEeeCCC-----cEEEEEccCCcccCCcCCCCCcccccccc-cCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEE
Q 023246           16 PNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRH-LIGKNNIHITGLAYSNTSELLISY-NDELVYLFE   88 (285)
Q Consensus        16 ~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd   88 (285)
                      .++|++.+.|+     .|+||++...+....   +..+....... .......++.+++.+.+-+.+|+| .+|.|..+.
T Consensus        77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~s---P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen   77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS---PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             ceEEEEEeecCCCCceEEEEecccccCCCCC---cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            36777766654     489999986531110   11111111111 112246688999999998888888 599998885


Q ss_pred             cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EEEEecccccce
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVN  167 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~  167 (285)
                      -.-.             +. +..+.-..|....+|+++.+ ..+++.++-+..-..|.+|.+....+ ...+..|...++
T Consensus       154 GDi~-------------RD-rgsr~~~~~~~~~pITgL~~-~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln  218 (933)
T KOG2114|consen  154 GDIL-------------RD-RGSRQDYSHRGKEPITGLAL-RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLN  218 (933)
T ss_pred             Ccch-------------hc-cccceeeeccCCCCceeeEE-ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccce
Confidence            4321             11 12233334555566999998 55665523333346788999884432 344667888999


Q ss_pred             EeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCC
Q 023246          168 QLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP  201 (285)
Q Consensus       168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~  201 (285)
                      |..+++....|+.++ +..+.+|+..... ..++.
T Consensus       219 Css~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  219 CSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            999998666555555 4579999987654 34454

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.85  E-value=4.4e-06  Score=70.00  Aligned_cols=158  Identities=16%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             ceeEEEEcCCCCcEEEEee----CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246            5 RLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      +.++++|++-+.+.||+|-    .|-.+.|||+.++-..       |.......   .+-.....+++|-.+.+++.+|.
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke~~~fs---~~~l~gqns~cwlrd~klvlaGm  173 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKESPLFS---SSTLDGQNSVCWLRDTKLVLAGM  173 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Cccccccc---cccccCccccccccCcchhhccc
Confidence            5678999997667888884    3678999999877321       11111111   11233455888988888888875


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEe-cCCCc-eE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWK-KKGGK-LV  156 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd-~~~~~-~~  156 (285)
                       ...++++|++...               .....+.  +  +.+..+.. +| .++++++-. ||.|.+|| .+.-+ ++
T Consensus       174 ~sr~~~ifdlRqs~---------------~~~~svn--T--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rnienpl  232 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSL---------------DSVSSVN--T--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRNIENPL  232 (783)
T ss_pred             ccchhhhhhhhhhh---------------hhhhhhh--h--hhccccee-cCCCCCceeccc-cCceeeccchhhhccHH
Confidence             7799999997431               1112221  1  12555665 66 677777655 99999999 43322 33


Q ss_pred             EEEeccc----ccceEeEEcCCCCe-EEEEecC-CcEEEEcCC
Q 023246          157 RLMVGDR----HVVNQLEPHPHIPM-FATCGIE-KTVKLWAPM  193 (285)
Q Consensus       157 ~~~~~h~----~~v~~~~~~p~~~~-l~t~~~d-~~i~iwd~~  193 (285)
                      ..+....    ..+..++|+|...- +++...| ++|+++++.
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            3332222    24899999997654 6666644 689999974

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.84  E-value=0.0032  Score=52.18  Aligned_cols=223  Identities=13%  Similarity=0.191  Sum_probs=111.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccC------CcC----------------------CCCCcccccccc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS------PIS----------------------SDTPVDTFCPRH   55 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~------~~~----------------------~~~~~~~~~~~~   55 (285)
                      -.|+.+.|+++. .-|++|...|.|.||.....+...      ...                      .+..-..|.+..
T Consensus         2 ~~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    2 VSVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             --EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             ceEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            468999999975 788899999999999876554322      000                      000012344455


Q ss_pred             cCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee------cccCceeeeeEEEe
Q 023246           56 LIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFF  129 (285)
Q Consensus        56 ~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~  129 (285)
                      ++....++|++++.|.=|-..+...+|.+.|.|++.+                ..+..-.      .+.....++++.|.
T Consensus        81 l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             EE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEE
T ss_pred             heeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEE
Confidence            5556688999999985554444456999999999765                2222211      11112236666651


Q ss_pred             ----cCCC---cEEEEecCCCeEEEEecCC---Cce----EEEEecccccceEeE-EcCC--------------------
Q 023246          130 ----GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH--------------------  174 (285)
Q Consensus       130 ----~~~~---~~l~~~~~dg~v~vwd~~~---~~~----~~~~~~h~~~v~~~~-~~p~--------------------  174 (285)
                          ..++   -.+++|+..|.+.+|.+..   +..    ......+.++|..+. ++.+                    
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence                2232   5788899999999998641   211    111123455655554 2211                    


Q ss_pred             CCeEEEEecCCcEEEEcCCCCCC--CCCCCC-cccceeeccc--cCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          175 IPMFATCGIEKTVKLWAPMPTDF--PPLPDN-AEKIMKANKQ--GREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       175 ~~~l~t~~~d~~i~iwd~~~~~~--~~~~~~-~~~~~~~~~~--~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      -+.++....+..+|++.+-..+.  +.+... ..........  ......+++...+|.++++.+..-+.+...
T Consensus       225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            12234444477899998865542  222110 0011111000  123447888999999999998876655544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00019  Score=57.22  Aligned_cols=84  Identities=11%  Similarity=0.054  Sum_probs=68.0

Q ss_pred             CCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecCCc
Q 023246          109 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT  186 (285)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~  186 (285)
                      +....+..+..  .|.+++| +|..+ ++..++.+..|++.|+++...+..+..| ..+.+++|+-+... +..|-..|.
T Consensus       184 kssq~lp~~g~--~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  184 KSSQILPGEGS--FIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             chhhcccccch--hhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence            33444555553  4999998 88776 7888999999999999999888888887 78999999988766 666778899


Q ss_pred             EEEEcCCCCC
Q 023246          187 VKLWAPMPTD  196 (285)
Q Consensus       187 i~iwd~~~~~  196 (285)
                      |.+||++..+
T Consensus       260 VlvyD~R~~~  269 (463)
T KOG1645|consen  260 VLVYDMRQPE  269 (463)
T ss_pred             EEEEEccCCC
Confidence            9999997654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.82  E-value=0.0035  Score=48.28  Aligned_cols=165  Identities=13%  Similarity=0.156  Sum_probs=91.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .+.+++|+|++..++++....+.|..++.. |+.+..+.            + .+ .+..-.|++..++.++++.. ++.
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~------------l-~g-~~D~EgI~y~g~~~~vl~~Er~~~   87 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP------------L-DG-FGDYEGITYLGNGRYVLSEERDQR   87 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------------SS--SSEEEEEE-STTEEEEEETTTTE
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe------------C-CC-CCCceeEEEECCCEEEEEEcCCCc
Confidence            488999999876788888888888888864 55322211            1 22 34577899988888888764 899


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEee--cc-cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC---CceEE
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKLVR  157 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~---~~~~~  157 (285)
                      +.++++.......    ..      .....+.  .. .....+-.++| ++.++.++.+-+..-..+|.++.   ...+.
T Consensus        88 L~~~~~~~~~~~~----~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~  156 (248)
T PF06977_consen   88 LYIFTIDDDTTSL----DR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFDLF  156 (248)
T ss_dssp             EEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred             EEEEEEecccccc----ch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence            9999985431000    00      0111222  11 12233889997 88877777776666666666543   22222


Q ss_pred             EE--e------cccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCC
Q 023246          158 LM--V------GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       158 ~~--~------~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~  195 (285)
                      ..  .      .....+.+++++|... +++.......|..+|..+.
T Consensus       157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence            11  1      1234578899999654 5666777888888986554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.0034  Score=52.52  Aligned_cols=156  Identities=10%  Similarity=0.023  Sum_probs=89.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCC---CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      ..+..-+|+|++..+.+..-..   ..+.++++.+++......                ..+.-...+|+|+|+.|+-+ 
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----------------~~g~~~~P~fspDG~~l~f~~  256 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----------------FNGNNGAPAFSPDGSKLAFSS  256 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec----------------cCCccCCccCCCCCCEEEEEE
Confidence            3455667888875544443333   348888888876321111                12233357899999866653 


Q ss_pred             -cCC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCCC
Q 023246           80 -NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGG  153 (285)
Q Consensus        80 -~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~~  153 (285)
                       .|+  .|+++|+...                . ...+.....   +..--.|+|+|++++-.++ .|  .|++++++.+
T Consensus       257 ~rdg~~~iy~~dl~~~----------------~-~~~Lt~~~g---i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         257 SRDGSPDIYLMDLDGK----------------N-LPRLTNGFG---INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CCCCCccEEEEcCCCC----------------c-ceecccCCc---cccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence             355  4677777765                2 222332222   2222236999999877654 33  4777777755


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEec-CCc--EEEEcCCCCC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD  196 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~--i~iwd~~~~~  196 (285)
                      +. ..+......-..-.|+|+|++++..+. +|.  |.+.++..+.
T Consensus       317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            54 333322222236789999999877764 344  5556654443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.79  E-value=0.0021  Score=42.22  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             eeEEEEc---CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            6 LNAIVID---PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         6 v~~~~~s---~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      |+++++.   -++.+-|++|+.|..||+|+-..--                ..+  .-+..|+.++-...+++..+-.+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~Ei--~e~~~v~~L~~~~~~~F~Y~l~NG   63 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AEI--TETDKVTSLCSLGGGRFAYALANG   63 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EEE--ecccceEEEEEcCCCEEEEEecCC
Confidence            5666654   4566899999999999999865221                111  124568888877776655556799


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC---cEEEEecCCCeEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF  146 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~v~  146 (285)
                      +|-+|+-...                 ..+.-..+.    +.++.+.+.++   ..|++|=.+|.|-
T Consensus        64 TVGvY~~~~R-----------------lWRiKSK~~----~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   64 TVGVYDRSQR-----------------LWRIKSKNQ----VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEeCcce-----------------eeeeccCCC----eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9999986432                 222222222    55665444443   3677787777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.00044  Score=60.52  Aligned_cols=70  Identities=16%  Similarity=0.256  Sum_probs=58.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .+++++|+|.. ..|+.|-.-|.+.+|...+.+               ..+....|..+|..+.||++|..+.++. -|.
T Consensus        61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~  124 (1416)
T KOG3617|consen   61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGS  124 (1416)
T ss_pred             ehhhhccChHH-HHHhhccccceeEEEecCCce---------------eeeeccCCCCCceeEEecCCCCeEEEcCCCce
Confidence            45689999964 788889889999999987664               3334467999999999999999999975 899


Q ss_pred             EEEEEcC
Q 023246           84 VYLFEKN   90 (285)
Q Consensus        84 i~iwd~~   90 (285)
                      +.+|...
T Consensus       125 v~lwr~d  131 (1416)
T KOG3617|consen  125 VHLWRYD  131 (1416)
T ss_pred             eEEEEee
Confidence            9999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.78  E-value=0.0089  Score=45.42  Aligned_cols=149  Identities=10%  Similarity=0.014  Sum_probs=95.8

Q ss_pred             EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEc
Q 023246           11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEK   89 (285)
Q Consensus        11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~   89 (285)
                      .-++...+++.|+..+.+.--|..+|++...-.                -..++.+-+.- -|.+++.| ..|.+++.+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i----------------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~   80 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI----------------LGVRIECSAIV-VGDFVVLGCYSGGLYFLCV   80 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh----------------hCceeeeeeEE-ECCEEEEEEccCcEEEEEe
Confidence            344555799999999999999999987532211                11223332222 35566664 6999999999


Q ss_pred             CCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEe
Q 023246           90 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL  169 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~  169 (285)
                      +++                .....|..-.. ..+...  .++++..+..|+.|+..+..|.++..++...+...+.-.+-
T Consensus        81 ~tG----------------s~~w~f~~~~~-vk~~a~--~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   81 KTG----------------SQIWNFVILET-VKVRAQ--CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             cch----------------hheeeeeehhh-hccceE--EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            988                45555543332 113333  37899999999999999999999999998877544444445


Q ss_pred             EEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          170 EPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       170 ~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      ++.|-...|..+...|.+.--..+..
T Consensus       142 ~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             eecCCCceEEEEeccceEEEEccCCC
Confidence            56663333444444565555555444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.0074  Score=50.55  Aligned_cols=190  Identities=11%  Similarity=0.082  Sum_probs=89.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      +.++|.++.|+.+  ..|++-..||.+++||+. |+.  .+.....+...      .-....+....+...|-.+.+ .+
T Consensus        79 ~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~------~v~e~~i~~~~~~~~GivvLt-~~  146 (410)
T PF04841_consen   79 DSGRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEE------KVLECRIFAIWFYKNGIVVLT-GN  146 (410)
T ss_pred             CCCCEEEEEECCC--CeEEEEEcCCEEEEEeCC-Cce--eechhhhcccc------CcccccccccccCCCCEEEEC-CC
Confidence            3468889999884  566677899999999987 332  11111111110      111222333344444533333 34


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.+.+..-...  +....... .++  .....+........+  ..+ +.+....+....++.+.+.+....+.   +. 
T Consensus       147 ~~~~~v~n~~~--~~~~~~~~-~~p--~~~~~~~~~~~~~~i--~~l-~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-  214 (410)
T PF04841_consen  147 NRFYVVNNIDE--PVKLRRLP-EIP--GLWTKFHWWPSWTVI--PLL-SSDRVVEILLANGETIYIIDENSFKQ---ID-  214 (410)
T ss_pred             CeEEEEeCccc--cchhhccc-cCC--Ccccccccccccccc--eEe-ecCcceEEEEecCCEEEEEEcccccc---cc-
Confidence            44443322111  00000000 000  000001111110001  122 34444444445555666444332211   22 


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCC-CcccceeeccccC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD-NAEKIMKANKQGR  215 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~  215 (285)
                      ..+++..++.||+++++|.-..+|.+.+....-.+ +..+.. .........|+..
T Consensus       215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            24689999999999999999999999888754332 222211 2233445556554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00024  Score=59.88  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=65.1

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccce-EeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +.-+.| +|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.+|.|=.||+|++.|...+.
T Consensus        23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            677774 9999999999999999999998 889999987777777 99999999999999999999999997765

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.66  E-value=0.017  Score=49.95  Aligned_cols=92  Identities=11%  Similarity=0.033  Sum_probs=58.1

Q ss_pred             CCeEEEEecCC-----CceEEEEecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCC-------------CCCCC
Q 023246          142 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDF-------------PPLPD  202 (285)
Q Consensus       142 dg~v~vwd~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~-------------~~~~~  202 (285)
                      ++.|.+.|..+     .+.+..+.. ......++++|||++++.+ ..+.++.+.|++..+.             .+...
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            46688888877     345555543 4567889999999995554 5689999999876431             01111


Q ss_pred             CcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ...++ ...+ ...+....+.--|.+|-.|++..
T Consensus       374 GlGPL-HTaF-Dg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPL-HTAF-DGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcc-eEEE-CCCCCEEEeEeecceeEEEehHH
Confidence            11111 1111 12234667778899999999887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.64  E-value=0.017  Score=48.40  Aligned_cols=156  Identities=11%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             CcceEEEEEecCCCEEEEe---c-C-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246           61 NIHITGLAYSNTSELLISY---N-D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s~---~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      ...+..-+|+|+++.++-.   . . ..+.++++..+                +....+. ....  -..-+| +|+|+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g----------------~~~~i~~-~~g~--~~~P~f-spDG~~  251 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG----------------KRPVILN-FNGN--NGAPAF-SPDGSK  251 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCC----------------ccceeec-cCCc--cCCccC-CCCCCE
Confidence            3456677899999855442   2 3 46999999887                2222222 1111  233454 999987


Q ss_pred             EEE-ecCCCe--EEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCccccee
Q 023246          136 VMS-GSDCGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMK  209 (285)
Q Consensus       136 l~~-~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~  209 (285)
                      ++- ...||.  |+++|+..++ +..+..-.+.-..-.|+|+|++++-.+. .|  .|.++++++.....+......-..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~  330 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN  330 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC
Confidence            755 444554  7777888666 3334433333336689999999776653 34  567777777655333222211112


Q ss_pred             eccccCCCceEEEeC-CCCe--EEEEEecccc
Q 023246          210 ANKQGREDHSRITLT-PDVI--MHVLRLQRRQ  238 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s-~d~~--i~vwd~~~~~  238 (285)
                      .. +++++++++..+ .+|.  |.+.++.+..
T Consensus       331 p~-~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         331 PV-WSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             cc-CCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            22 344444444333 3454  5555554443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.64  E-value=0.0034  Score=54.09  Aligned_cols=113  Identities=7%  Similarity=-0.049  Sum_probs=68.8

Q ss_pred             cceEEEEEecCCCEEEEec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           62 IHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      .....+.++|||++++.++  +.+|.|.|+.+........+...    ........-..   .....+| +++|+...+-
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~----~~vvaevevGl---GPLHTaF-Dg~G~aytsl  392 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR----DAVVAEPELGL---GPLHTAF-DGRGNAYTTL  392 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc----ceEEEeeccCC---CcceEEE-CCCCCEEEeE
Confidence            3566889999999887743  99999999987521111110000    00122222211   1445676 8899888888


Q ss_pred             cCCCeEEEEecCC----------CceEEEEecccccceE-----eEEcCCCCeEEEEe
Q 023246          140 SDCGHLFIWKKKG----------GKLVRLMVGDRHVVNQ-----LEPHPHIPMFATCG  182 (285)
Q Consensus       140 ~~dg~v~vwd~~~----------~~~~~~~~~h~~~v~~-----~~~~p~~~~l~t~~  182 (285)
                      .-|..|..|++..          ...+..+..|.++-.-     =.-.|+|++|++..
T Consensus       393 f~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        393 FLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            8999999999875          2344445444333221     12367888888775

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.62  E-value=0.012  Score=45.49  Aligned_cols=186  Identities=14%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             CCCcceEEEEEecCCCEEE-Eec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           59 KNNIHITGLAYSNTSELLI-SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      +-...+..++|.|+...|+ ... .+.|..++.. +                +.++.+.-... .-.-++++ -.++.++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G----------------~vlr~i~l~g~-~D~EgI~y-~g~~~~v   79 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G----------------KVLRRIPLDGF-GDYEGITY-LGNGRYV   79 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------------EEEEEE-SS--SSEEEEEE--STTEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C----------------CEEEEEeCCCC-CCceeEEE-ECCCEEE
Confidence            3344699999999876444 454 7888888865 3                35555543221 12678887 6778888


Q ss_pred             EEecCCCeEEEEecCCCc------eEEEEe-----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCC--C-C-CC---
Q 023246          137 MSGSDCGHLFIWKKKGGK------LVRLMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--T-D-FP---  198 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~------~~~~~~-----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~--~-~-~~---  198 (285)
                      ++--.++.+.++++....      ....+.     .++..+-.++|+|.++.|+.+-+..-.++|.++.  . . +.   
T Consensus        80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            877779999999884321      112221     2456689999999988877777776677776644  1 1 10   


Q ss_pred             --CCC---CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeec----------cccccCCCCCcCeEEE
Q 023246          199 --PLP---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY----------NAADFESDEEEGETYL  263 (285)
Q Consensus       199 --~~~---~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~  263 (285)
                        .+.   .....+-.+......+.+++....+..|..+| ..++.+..+....          ....++.+ .+|.+|+
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYI  237 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYI  237 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEE
Confidence              000   01111111211222345666666777777777 4444444432221          12233333 3567888


Q ss_pred             ee
Q 023246          264 LG  265 (285)
Q Consensus       264 ~~  265 (285)
                      ++
T Consensus       238 vs  239 (248)
T PF06977_consen  238 VS  239 (248)
T ss_dssp             EE
T ss_pred             Ec
Confidence            76

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.51  E-value=0.00014  Score=63.88  Aligned_cols=126  Identities=14%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             CCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC--Cc
Q 023246          109 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KT  186 (285)
Q Consensus       109 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d--~~  186 (285)
                      +.++.|..+...  .++++| +-..++++.|+..|.|++|++.+|........|++.|+.+.-+.+|.++++.+.-  -.
T Consensus      1092 r~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            456777777755  899998 8999999999999999999999999999999999999999999999986665532  25


Q ss_pred             EEEEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246          187 VKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       187 i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                      ..+|++...  ..+++.....  +.   .+......+.|.......+||+++.+.+.+
T Consensus      1169 saLW~~~s~~~~~Hsf~ed~~--vk---Fsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDEDKA--VK---FSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             HHHhccccccCccccccccce--ee---hhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            678998542  2334432111  11   111222345566667788999998877655

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.49  E-value=0.0032  Score=56.18  Aligned_cols=140  Identities=11%  Similarity=0.189  Sum_probs=85.0

Q ss_pred             eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec------CCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           23 GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN------TSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        23 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~------~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      .....|+-.|+..|+.+..|+....              .+|..++=..      ....|+.-+++.+..||.+...   
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~--------------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---  563 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDD--------------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---  563 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCC--------------cceeEecccccccccCCCceEEEECCCceEEeccCCCC---
Confidence            4567888889998886655543321              1233322111      1235566678999999998541   


Q ss_pred             CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCC
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP  176 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  176 (285)
                            ..+. ....+.+. ..  ....|++  .....+||.|+.+|.|++||.-..+....+.+-..+|..|..+.||+
T Consensus       564 ------~k~v-~~~~k~Y~-~~--~~Fs~~a--Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk  631 (794)
T PF08553_consen  564 ------NKLV-DSQSKQYS-SK--NNFSCFA--TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK  631 (794)
T ss_pred             ------Ccee-eccccccc-cC--CCceEEE--ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc
Confidence                  0000 00111221 11  2266666  34555899999999999999543333344556678999999999999


Q ss_pred             eEEEEecCCcEEEEcC
Q 023246          177 MFATCGIEKTVKLWAP  192 (285)
Q Consensus       177 ~l~t~~~d~~i~iwd~  192 (285)
                      +++..+ +..+.+++.
T Consensus       632 wilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  632 WILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEEee-cceEEEEEE
Confidence            966555 356667664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.46  E-value=0.013  Score=38.65  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             eeeEEEecCC---CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC
Q 023246          123 VKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP  199 (285)
Q Consensus       123 i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~  199 (285)
                      |.++++.+-+   .+.|+.|++|..|++|+-.  +.+..+.. ...|.+++-... ..|+.+-.+|+|.+|+-..... .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-R   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-R   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee-e
Confidence            4555543322   3689999999999999864  67777775 457888877665 5688899999999997644332 2


Q ss_pred             CCCCcccceeeccccC---CCceEEEeCCCCeEE
Q 023246          200 LPDNAEKIMKANKQGR---EDHSRITLTPDVIMH  230 (285)
Q Consensus       200 ~~~~~~~~~~~~~~~~---~~~~~~~~s~d~~i~  230 (285)
                      .+.... +.++.....   ...-+++|-.+|.|-
T Consensus        77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            222222 333322222   223577787787764

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.0012  Score=59.25  Aligned_cols=101  Identities=19%  Similarity=0.238  Sum_probs=71.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP   95 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~   95 (285)
                      ..++.|+..|.+-..|+...-              ++.+.-..-.++|++++|+.+|.+++.| .+|.|.+||+..+   
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---  162 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---  162 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence            578888888888888876431              2222213346799999999999999988 5999999999987   


Q ss_pred             CCCCCCCccccCCCCceEeecccCcee-eeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                                   +.++.+..+..+.. +..+.+ ...+..++++...|.  +|.+
T Consensus       163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEEE
Confidence                         67777776665421 344443 445557888888786  4543

>smart00320 WD40 WD40 repeats

Probab=97.44  E-value=0.00046  Score=35.48  Aligned_cols=37  Identities=32%  Similarity=0.665  Sum_probs=30.9

Q ss_pred             CceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe
Q 023246          110 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK  149 (285)
Q Consensus       110 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd  149 (285)
                      ....+..|...  +.++.| .+.++++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGP--VTSVAF-SPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCc--eeEEEE-CCCCCEEEEecCCCeEEEcC
Confidence            45666667755  999997 88889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.001  Score=56.26  Aligned_cols=93  Identities=10%  Similarity=0.124  Sum_probs=73.6

Q ss_pred             CcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeee-eEEEecCCCcEEEE
Q 023246           61 NIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS  138 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~  138 (285)
                      ...+.-+.|+|.-.++|... +|.|.+..++-                 +.+.++..+...  ++ +++| .|+|+.++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV   79 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV   79 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc-----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence            34677899999999999964 99999998873                 466777655543  55 8885 999999999


Q ss_pred             ecCCCeEEEEecCCCceEEEEe-cccccceEeEEcC
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP  173 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~p  173 (285)
                      |-.||+|++.|.+++..+.... .....|.++-|.|
T Consensus        80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999999998877632 2346788888874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.056  Score=44.99  Aligned_cols=200  Identities=10%  Similarity=0.075  Sum_probs=120.7

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--e--cCC
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--Y--NDE   82 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~--~d~   82 (285)
                      ..+++++.+.+.+++...++.|.+.|..+.+..              .....+.  ....++++++++.+..  .  .++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~  140 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------GSIPVGL--GPVGLAVDPDGKYVYVANAGNGNN  140 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------eEeeecc--CCceEEECCCCCEEEEEecccCCc
Confidence            357788877567777777899999997665522              1111121  5668999999975444  3  268


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEE-E--
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVR-L--  158 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~-~--  158 (285)
                      ++.+.|..+.                +..........   -..+++ +|+++.++... .++.|.+.|........ .  
T Consensus       141 ~vsvid~~t~----------------~~~~~~~vG~~---P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~  200 (381)
T COG3391         141 TVSVIDAATN----------------KVTATIPVGNT---PTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVG  200 (381)
T ss_pred             eEEEEeCCCC----------------eEEEEEecCCC---cceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceeccccc
Confidence            8999998876                45555333222   267887 99999766554 78999999977555553 1  


Q ss_pred             --EecccccceEeEEcCCCCeEEEEec-C--CcEEEEcCCCCCCCCC--CCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          159 --MVGDRHVVNQLEPHPHIPMFATCGI-E--KTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       159 --~~~h~~~v~~~~~~p~~~~l~t~~~-d--~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                        .. -......+.++|++.++..... +  +.+...|.........  ....................++-+..+.+.+
T Consensus       201 ~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         201 SLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             cccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence              11 1234567899999997544433 3  5888888877664322  1111011111111222223333344577888


Q ss_pred             EEecccccceeE
Q 023246          232 LRLQRRQTLAYR  243 (285)
Q Consensus       232 wd~~~~~~~~~~  243 (285)
                      -|..+.......
T Consensus       280 id~~~~~v~~~~  291 (381)
T COG3391         280 IDGATDRVVKTG  291 (381)
T ss_pred             EeCCCCceeeee
Confidence            877766554443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.40  E-value=0.019  Score=50.22  Aligned_cols=220  Identities=15%  Similarity=0.098  Sum_probs=109.5

Q ss_pred             CcEEEEeeCCC------cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC------C
Q 023246           16 PNYFAVGGSDE------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND------E   82 (285)
Q Consensus        16 ~~~l~tg~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d------~   82 (285)
                      +.+++.|+.++      .+..||..+++....-..             . +...-.++++.. +.+.++ |.+      .
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~-~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~  349 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------P-SPRCRVGVAVLN-GKLYVVGGYDSGSDRLS  349 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------C-cccccccEEEEC-CEEEEEccccCCCcccc
Confidence            46888888774      677888887753211110             1 111223344443 354444 446      3


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe-----EEEEecCCCce--
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKL--  155 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----v~vwd~~~~~~--  155 (285)
                      .+..||....              .|..+..+...+..  . +++  .-+|...+.|+.||.     +-.||..+.+-  
T Consensus       350 ~ve~YD~~~~--------------~W~~~a~M~~~R~~--~-~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  350 SVERYDPRTN--------------QWTPVAPMNTKRSD--F-GVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             eEEEecCCCC--------------ceeccCCccCcccc--c-eeE--EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            4777887765              12222233322222  2 222  236778888888864     66777665442  


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCC------cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCC--
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV--  227 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--  227 (285)
                      +..+.........+.+  ++...+.||.++      ++..||+.+...........+-.........+.+.+.|+.|+  
T Consensus       411 va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~  488 (571)
T KOG4441|consen  411 VAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS  488 (571)
T ss_pred             cCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC
Confidence            2222221222222222  567777777554      578899988764433322222111111223455667777665  


Q ss_pred             ---eEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCCCC
Q 023246          228 ---IMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       228 ---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                         ++..+|..+.+-.....-............++.+|++|-.++..
T Consensus       489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~  535 (571)
T KOG4441|consen  489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN  535 (571)
T ss_pred             ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence               25556655543222211111222222223456699998755543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.35  E-value=0.02  Score=47.52  Aligned_cols=174  Identities=12%  Similarity=0.078  Sum_probs=86.9

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCC-
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSE-   74 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~-   74 (285)
                      |++++|++++.|.-  -++|.|..+|.+.|.|++....+....    +..   ..........|+++.|+.     |+. 
T Consensus        84 ~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~----i~~---~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   84 AKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNEN----IRE---SFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             --S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEE----GGG-----T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             ccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeecc----ccc---cccccccccCeeEEEEEEEecCCCccc
Confidence            46899999999865  499999999999999998665432210    000   112123455788898873     332 


Q ss_pred             --EEEEe-cCCcEEEEEcCC-CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-C----------------
Q 023246           75 --LLISY-NDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D----------------  133 (285)
Q Consensus        75 --~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~----------------  133 (285)
                        .+.+| +.|.+.+|.+.- ..+    .+.      .+.......+..+  +..+...+.+ +                
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g----~f~------v~~~~~~~~~~~~--i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNG----RFS------VQFAGATTNHDSP--ILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-----EE------EEEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCC----ceE------EEEeeccccCCCc--eEEEEEEECCCCCcccCchhHhhccccC
Confidence              44444 589999998752 100    000      0000111112222  4443322111 1                


Q ss_pred             ----cEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEc-----CCCCeEEEEecCCcEEEEcCCCCC
Q 023246          134 ----EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       134 ----~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                          .+++. ..+..++++...+.+..+......-....+.+-     ..+..|++-..+|.|+++.+-.-+
T Consensus       223 ~~i~g~vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  223 ISIPGYVVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             ----EEEEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             CCcCcEEEE-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence                13444 346789999988877766554222233334442     244558888899999999975543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0032  Score=52.43  Aligned_cols=143  Identities=12%  Similarity=0.165  Sum_probs=90.6

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--------EEEEecCCcEEEEE
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFE   88 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--------~l~s~~d~~i~iwd   88 (285)
                      -+|.++..-..++-.|+..|+.+..|+....                |+-+.+.|+.+        .|+.-++..|+-||
T Consensus       347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD  410 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRID  410 (644)
T ss_pred             eEeeCCCCcCcceeeecccceeeeEeeccCC----------------cceeeccCCcchhcccccccEEeecCCceEEec
Confidence            3555666667788889998886655544332                44555555442        44555689999999


Q ss_pred             cCCCCCCCCCCCCCccccCCCCceEeecccCc--eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  166 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  166 (285)
                      .+-..              ...+..-+.|...  ....|.+  .....+++.|+.+|.|++||.-.......+.+-..+|
T Consensus       411 pRv~~--------------~~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I  474 (644)
T KOG2395|consen  411 PRVQG--------------KNKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI  474 (644)
T ss_pred             ccccC--------------cceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence            87441              0112222222221  1144444  4556699999999999999974333344566777899


Q ss_pred             eEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          167 NQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      ..+..+.+|++++..+ +..+.+.++
T Consensus       475 ~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  475 KHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eeEEeeccCcEEEEec-ccEEEEEEE
Confidence            9999999999966555 345555554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.00066  Score=59.46  Aligned_cols=108  Identities=12%  Similarity=0.097  Sum_probs=81.8

Q ss_pred             EEEEEecCCCEEEEe-----cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           65 TGLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        65 ~~i~~s~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      +-..|+|...+|+.+     ..|.|.||--...                 +-+...   .+..+.+++| +|..-.++.|
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGE-----------------Pqr~Vt---~P~hatSLCW-Hpe~~vLa~g   77 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGE-----------------PQRDVT---YPVHATSLCW-HPEEFVLAQG   77 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCC-----------------CCcccc---cceehhhhcc-ChHHHHHhhc
Confidence            345788888877764     2688888853322                 111111   1122667885 9988888999


Q ss_pred             cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      =.-|.+.+|...+.+.-.....|..+|..+.|+|+|..++|+..-|.+.+|...
T Consensus        78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            999999999998776666666799999999999999999999999999999864

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.29  E-value=0.00097  Score=49.42  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             CEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246           74 ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        74 ~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~  152 (285)
                      ..+++ +.+|.|.+|......               .....+...... ....+.- ..++.+..++..+|.|+.|++..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g---------------~~~d~~~s~~e~-i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEG---------------AHSDRVCSGEES-IDLGIPN-GRDSSLGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             ceEEeecccceEEEecCCccc---------------hHHHhhhccccc-ceecccc-ccccceeEEeccCCceeeecccc
Confidence            34555 569999999986321               111111111111 1222321 34556888999999999999998


Q ss_pred             CceEEEEeccc-ccceEeEEcCCCCeEEEE--ecCCcEEEEcCC
Q 023246          153 GKLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPM  193 (285)
Q Consensus       153 ~~~~~~~~~h~-~~v~~~~~~p~~~~l~t~--~~d~~i~iwd~~  193 (285)
                      .+.+-....|. .++..+..+..++.++.+  |.|..++.|++.
T Consensus       134 ~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  134 NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            88877666676 444444444444455544  555555555543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.03  Score=50.24  Aligned_cols=70  Identities=14%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      ...+|++-+.+|  +||+|+.+|.||+||- .+.              ..++.+.+-..+|..|..+.||+++++..+..
T Consensus       578 ~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~--------------~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  578 NNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK--------------RAKTALPGLGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             CCceEEEecCCc--eEEEEeCCCcEEeecc-cch--------------hhhhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence            345677777754  9999999999999993 233              34445567788999999999999999988888


Q ss_pred             EEEEEcC
Q 023246           84 VYLFEKN   90 (285)
Q Consensus        84 i~iwd~~   90 (285)
                      |.+++..
T Consensus       641 LlLi~t~  647 (794)
T PF08553_consen  641 LLLIDTL  647 (794)
T ss_pred             EEEEEEe
Confidence            9998875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.27  E-value=0.0011  Score=36.33  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=28.2

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH   37 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~   37 (285)
                      .+|.+++|+|+. .++|.|+.+|.|.+|.+ +++
T Consensus        12 ~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence            478999999985 89999999999999999 443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.27  E-value=0.014  Score=47.33  Aligned_cols=136  Identities=15%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~  160 (285)
                      |.|.++++....            .....+..+..+..+.+|++++-+  ++.++++.  .+.|++|++...+ ....-.
T Consensus        62 Gri~v~~i~~~~------------~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~  125 (321)
T PF03178_consen   62 GRILVFEISESP------------ENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAF  125 (321)
T ss_dssp             EEEEEEEECSS-----------------EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEE
T ss_pred             cEEEEEEEEccc------------ccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhhe
Confidence            889999998620            000122322222223348888853  55544433  4889999998777 443332


Q ss_pred             c-ccccceEeEEcCCCCeEEEEecCCcEEEEcCC--CCCCCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          161 G-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM--PTDFPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       161 ~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      . ....+.++..  .+++++.|..-+.+.++..+  ...+..+..  ....+........+ ..++.+..+|.+.++...
T Consensus       126 ~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  126 YDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred             ecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence            2 1224455544  46688889888888877443  332222211  12223333222123 488889999999999887


Q ss_pred             c
Q 023246          236 R  236 (285)
Q Consensus       236 ~  236 (285)
                      .
T Consensus       203 ~  203 (321)
T PF03178_consen  203 P  203 (321)
T ss_dssp             S
T ss_pred             C
Confidence            3

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.22  E-value=0.12  Score=45.53  Aligned_cols=66  Identities=8%  Similarity=0.109  Sum_probs=40.9

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEE---EecCCCce-E---EEEec-ccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFI---WKKKGGKL-V---RLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~v---wd~~~~~~-~---~~~~~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  191 (285)
                      |..+.| +|+|..++... +|.|++   -....|+. +   ..+.. -...+.++.|.+++..+ .+..++...+|.
T Consensus       450 Issl~w-SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        450 ISELQL-SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             cCeEEE-CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            999996 99999887765 478877   44444541 1   11222 22346889999998854 444444444454

>PHA02713 hypothetical protein; Provisional

Probab=97.22  E-value=0.028  Score=49.23  Aligned_cols=92  Identities=2%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             eEEEEecCCCce--EEEEecccccceEeEEcCCCCeEEEEecC------CcEEEEcCCC-CCCCCCCCCcccceeecccc
Q 023246          144 HLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       144 ~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~  214 (285)
                      .+..||..+.+-  +..+.........+++  +++..+.|+.+      ..+..||+.+ ...........+........
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            477788776543  2222211112112222  45666667654      2467899987 55432222221211121222


Q ss_pred             CCCceEEEeCCCC--eEEEEEeccc
Q 023246          215 REDHSRITLTPDV--IMHVLRLQRR  237 (285)
Q Consensus       215 ~~~~~~~~~s~d~--~i~vwd~~~~  237 (285)
                      .++.+.+.|+.++  .+..||..+.
T Consensus       511 ~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ECCEEEEEeeecceeehhhcCcccc
Confidence            3556777887777  5555555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.21  E-value=0.047  Score=44.29  Aligned_cols=147  Identities=10%  Similarity=0.071  Sum_probs=89.2

Q ss_pred             CcEEEEeeC----------CCcEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246           16 PNYFAVGGS----------DEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV   84 (285)
Q Consensus        16 ~~~l~tg~~----------dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i   84 (285)
                      ..+|+.|+.          .|.|.++++... ...      ..+   ..... ....++|++++--  +.+|+.+.++.|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~------~~l---~~i~~-~~~~g~V~ai~~~--~~~lv~~~g~~l  109 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN------FKL---KLIHS-TEVKGPVTAICSF--NGRLVVAVGNKL  109 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------EE---EEEEE-EEESS-EEEEEEE--TTEEEEEETTEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccc------eEE---EEEEE-EeecCcceEhhhh--CCEEEEeecCEE
Confidence            468887764          288999999874 100      000   11111 2346788888766  335777778999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEEEec--
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVG--  161 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~--  161 (285)
                      .+|++...                +.+.....+.....+.++..   .+++++.|..-..+.++..+. .+.+..+..  
T Consensus       110 ~v~~l~~~----------------~~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~  170 (321)
T PF03178_consen  110 YVYDLDNS----------------KTLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDY  170 (321)
T ss_dssp             EEEEEETT----------------SSEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEES
T ss_pred             EEEEccCc----------------ccchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecC
Confidence            99999876                31222222222223666654   366899998888888775443 332333322  


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      ....++++.+-++++.++.+..+|.+.++...
T Consensus       171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            23458888888676789999999999998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.17  E-value=0.0016  Score=35.78  Aligned_cols=34  Identities=12%  Similarity=0.022  Sum_probs=30.0

Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      ...|..++|+|...++|.+..+|.|.++.++..+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            3569999999999999999999999999986554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.12  E-value=0.15  Score=44.05  Aligned_cols=199  Identities=12%  Similarity=0.113  Sum_probs=107.2

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcce--EEEEEecCCCEEEEecCCcEEEEEcCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG   94 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~   94 (285)
                      ..++.++.++.|.-.|..+++............         .+...+  ..+....++..++...++.|+-+|..++  
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~---------~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG--  130 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD---------RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG--  130 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc---------ccccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence            466778888999999999998654433222100         000000  0111211244555556999999999887  


Q ss_pred             CCCCCCCCccccCCCCceEeecccCc---eee-eeEEEecCCCcEEEEec---------CCCeEEEEecCCCceEEEEec
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNS---QTV-KGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i-~~~~~~~~~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~  161 (285)
                                    +.+-.+......   ..+ ....+ .  +..++.++         .+|.++.+|..+|+.+.....
T Consensus       131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence                          444443322110   001 11122 1  23344443         468899999999999877653


Q ss_pred             cccc--------------------c-eEeEEcCCCCeEEEEecCC------------------cEEEEcCCCCCCC---C
Q 023246          162 DRHV--------------------V-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDFP---P  199 (285)
Q Consensus       162 h~~~--------------------v-~~~~~~p~~~~l~t~~~d~------------------~i~iwd~~~~~~~---~  199 (285)
                      ....                    + ...++.+.+..++.++.++                  .|.-.|+++++..   +
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence            2110                    1 1234455556666666554                  6888888877631   1


Q ss_pred             CCCC--------cccceeecc--ccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          200 LPDN--------AEKIMKANK--QGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       200 ~~~~--------~~~~~~~~~--~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ...+        ..+++....  .......++.++.+|.++.+|.++++.+-..
T Consensus       274 ~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         274 TTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             CCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence            1111        111111100  0001125778889999999999998766444

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.09  E-value=0.11  Score=41.82  Aligned_cols=158  Identities=10%  Similarity=-0.022  Sum_probs=87.2

Q ss_pred             EEEEcCCCCcEEEEe----------eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            8 AIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .+..+|++ ..+++.          -..-.|.+||..+......+..+..-     +..   .......++++.+++++.
T Consensus        40 ~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~-----R~~---~~~~~~~~~ls~dgk~~~  110 (342)
T PF06433_consen   40 NVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP-----RAQ---VVPYKNMFALSADGKFLY  110 (342)
T ss_dssp             EEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------B-----BS--GGGEEE-TTSSEEE
T ss_pred             ceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc-----hhe---ecccccceEEccCCcEEE
Confidence            46788986 555543          33567999999987644332222100     000   011223467889998776


Q ss_pred             Ee--c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CC
Q 023246           78 SY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GG  153 (285)
Q Consensus        78 s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~  153 (285)
                      ..  + -..|.|.|+...                +.+..+....     +...| ....+-+.+-+.||.+.-..+. .|
T Consensus       111 V~N~TPa~SVtVVDl~~~----------------kvv~ei~~PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~G  168 (342)
T PF06433_consen  111 VQNFTPATSVTVVDLAAK----------------KVVGEIDTPG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDADG  168 (342)
T ss_dssp             EEEESSSEEEEEEETTTT----------------EEEEEEEGTS-----EEEEE-EEETTEEEEEETTSCEEEEEETSTS
T ss_pred             EEccCCCCeEEEEECCCC----------------ceeeeecCCC-----EEEEE-ecCCCceEEEecCCceEEEEECCCC
Confidence            64  3 678999999876                4555554332     12223 2223456677778999888877 56


Q ss_pred             ceEEEEe----ccccc-ceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          154 KLVRLMV----GDRHV-VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       154 ~~~~~~~----~h~~~-v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +...+..    ....+ ...-++...+..++-.+.+|.|+--|+....
T Consensus       169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred             CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence            6543221    11122 2233444455556667788888888876654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.09  E-value=0.037  Score=41.58  Aligned_cols=96  Identities=11%  Similarity=0.055  Sum_probs=64.4

Q ss_pred             EEEEEecCCCEEE-E-ecCCcEEEEE--cCCCCCCCCCCCCCccccCCCCceEeecccC--ceeeeeEEEecCCCcEEEE
Q 023246           65 TGLAYSNTSELLI-S-YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        65 ~~i~~s~~~~~l~-s-~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~  138 (285)
                      +.++|+.+.+.+. . +.+-.|.-||  ..++.  .+         +.+.+..++..+.  ....-.+++ +.+|++.++
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~--~s---------nr~~i~dlrk~~~~e~~~PDGm~I-D~eG~L~Va  228 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD--LS---------NRKVIFDLRKSQPFESLEPDGMTI-DTEGNLYVA  228 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCccc--cc---------CcceeEEeccCCCcCCCCCCcceE-ccCCcEEEE
Confidence            4688988776443 3 4588887788  44442  11         1112222221100  011234555 778999999


Q ss_pred             ecCCCeEEEEecCCCceEEEEecccccceEeEEc
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH  172 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~  172 (285)
                      .-..++|...|..+|+.+.+++-....|++++|-
T Consensus       229 ~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            9999999999999999999998888899999995

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.05  E-value=0.026  Score=47.58  Aligned_cols=139  Identities=15%  Similarity=0.080  Sum_probs=72.0

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV   84 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i   84 (285)
                      .-....|.+.  +.+|+-...++|+|+.--+.+....         +.     .  ...+..|-.   |.+|...+++.|
T Consensus        70 ~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~---------i~-----~--~~~~~~If~---G~LL~~~~~~~i  128 (443)
T PF04053_consen   70 SGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKS---------IK-----L--PFSVEKIFG---GNLLGVKSSDFI  128 (443)
T ss_dssp             E-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT---------------------SS-EEEEE----SSSEEEEETTEE
T ss_pred             ceeEEEEecC--ccEEEEECCCeEEEEEcCccccceE---------Ec-----C--CcccceEEc---CcEEEEECCCCE
Confidence            4456789884  4677777789999963222221000         00     1  112333322   888888777799


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-----------
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-----------  153 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-----------  153 (285)
                      .+||..++                +.++.+....    |..+. |++++++++..+.+ .+++++....           
T Consensus       129 ~~yDw~~~----------------~~i~~i~v~~----vk~V~-Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e  186 (443)
T PF04053_consen  129 CFYDWETG----------------KLIRRIDVSA----VKYVI-WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVE  186 (443)
T ss_dssp             EEE-TTT------------------EEEEESS-E-----EEEE-E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-G
T ss_pred             EEEEhhHc----------------ceeeEEecCC----CcEEE-EECCCCEEEEEeCC-eEEEEEecchhcccccccCch
Confidence            99999987                5666665332    77787 59999999988755 5666664422           


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEE
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  189 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~i  189 (285)
                      ..+..+..-...|.+.+|.-+  .|+-.... .++.
T Consensus       187 ~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  187 DAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             GGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             hceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            133333332467888899765  43333333 5655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.01  E-value=0.039  Score=42.12  Aligned_cols=111  Identities=8%  Similarity=-0.074  Sum_probs=78.5

Q ss_pred             cCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccce
Q 023246          130 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIM  208 (285)
Q Consensus       130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~  208 (285)
                      .....+++.|+..+.+.--|..+|+....-.- ...+.+-+.- -|.+++.|+..|.+++.+.+++.. ..+. ....+.
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~-~~~~vk   96 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV-ILETVK   96 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee-ehhhhc
Confidence            34467889999999999999999988754331 2233332222 467899999999999999988853 3332 333343


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .......+..++..++.|+..+..|.++...+.+.
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            34345567779999999999999999887665543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.18  Score=42.05  Aligned_cols=115  Identities=10%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             ceEEEEEecCCCEE-EEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246           63 HITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        63 ~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                      ....++.++.+..+ +.. .++.|.+.|....                +..........   ...+++ +++++.+..+.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~----------------~~~~~~~vG~~---P~~~~~-~~~~~~vYV~n  134 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN----------------TVLGSIPVGLG---PVGLAV-DPDGKYVYVAN  134 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCccc----------------ceeeEeeeccC---CceEEE-CCCCCEEEEEe
Confidence            34577888888744 443 4799999997655                34444332222   567886 89987776655


Q ss_pred             C---CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCC
Q 023246          141 D---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFP  198 (285)
Q Consensus       141 ~---dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~  198 (285)
                      .   ++.+.+.|..+.+.+.....-..+ ..++++|++..+..+ ..++.|.+.|.+...+.
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            4   789999999999888876543334 889999999975544 47889999998766554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.15  Score=40.93  Aligned_cols=221  Identities=13%  Similarity=0.083  Sum_probs=112.6

Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEc
Q 023246           10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEK   89 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~   89 (285)
                      .|.++...++.+--..+.|.-|+..+++.          ..+       .+...+.++..-..+..|+++..+ +.+++.
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----------~~~-------~~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~   92 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK----------RVF-------PSPGGFSSGALIDAGGRLIACEHG-VRLLDP   92 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce----------EEE-------ECCCCcccceeecCCCeEEEEccc-cEEEec
Confidence            46676555677777778888888876642          111       122233444444444455554433 444554


Q ss_pred             CCCCCCCCCCCCCccccCCCCceEee----cccCceeeeeEEEecCCCcEEEEecC-----------CCeEEEEecCCCc
Q 023246           90 NMGLGPSPLSLSPEDLQKREEPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKGGK  154 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~  154 (285)
                      ..+                ..+..+.    +... ...+.... .|+|.+.++...           -|.|+.+|. .+.
T Consensus        93 ~~~----------------~~~t~~~~~~~~~~~-~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~  153 (307)
T COG3386          93 DTG----------------GKITLLAEPEDGLPL-NRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG  153 (307)
T ss_pred             cCC----------------ceeEEeccccCCCCc-CCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC
Confidence            433                1111111    1111 12556665 788887766443           234555554 466


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEec-CCcEEEEcCCC--CCCCC-----CCCCcccceeeccccCCCceEEEeCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDFPP-----LPDNAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      .+..+..+-..-+.|+|||+++.|..+.. .+.|.-|++..  ..+..     ........-.-.....++.+.+++..+
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            66666666667789999999988766654 47787777653  11100     000000000000011123344344444


Q ss_pred             C-eEEEEEecccccceeEeee-ccccccCCC-CCcCeEEEeecCC
Q 023246          227 V-IMHVLRLQRRQTLAYRERR-YNAADFESD-EEEGETYLLGFSD  268 (285)
Q Consensus       227 ~-~i~vwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~  268 (285)
                      | .|.+|+-. ++++..+... +........ .+-..+|+..-..
T Consensus       234 g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         234 GGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             CceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            3 88888877 5565555433 333333333 3344577765443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.87  E-value=0.23  Score=41.95  Aligned_cols=195  Identities=12%  Similarity=0.140  Sum_probs=95.2

Q ss_pred             eEEEEcCCCCcEEEEe-eCCCc----EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            7 NAIVIDPRNPNYFAVG-GSDEY----ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg-~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      ..++++|++ +++|.+ +..|.    ++++|+.+++.+              ...+.  ......+.|.++++.|+. ..
T Consensus       127 ~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l--------------~d~i~--~~~~~~~~W~~d~~~~~y~~~  189 (414)
T PF02897_consen  127 GGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL--------------PDGIE--NPKFSSVSWSDDGKGFFYTRF  189 (414)
T ss_dssp             EEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE--------------EEEEE--EEESEEEEECTTSSEEEEEEC
T ss_pred             eeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc--------------CCccc--ccccceEEEeCCCCEEEEEEe
Confidence            357899987 555544 55554    999999998632              11101  111224999999885444 32


Q ss_pred             -----------CCcEEEEEcCCCCCCCCCCCCCccccCCCC-ceEeecccCceeeeeEEEecCCCcEEEEecC---C-Ce
Q 023246           81 -----------DELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-GH  144 (285)
Q Consensus        81 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d-g~  144 (285)
                                 ...|+.|.+.+..               .. ...|...........+.. ++++++++....   + ..
T Consensus       190 ~~~~~~~~~~~~~~v~~~~~gt~~---------------~~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s~  253 (414)
T PF02897_consen  190 DEDQRTSDSGYPRQVYRHKLGTPQ---------------SEDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSESE  253 (414)
T ss_dssp             STTTSS-CCGCCEEEEEEETTS-G---------------GG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEE
T ss_pred             CcccccccCCCCcEEEEEECCCCh---------------HhCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCCe
Confidence                       2237788877651               11 234444333211445665 899998765322   3 56


Q ss_pred             EEEEecCCC----ceEEEEecccccce-EeEEcCCCCeEEEEec---CCcEEEEcCCCCCC---C-CCCCCcccceeecc
Q 023246          145 LFIWKKKGG----KLVRLMVGDRHVVN-QLEPHPHIPMFATCGI---EKTVKLWAPMPTDF---P-PLPDNAEKIMKANK  212 (285)
Q Consensus       145 v~vwd~~~~----~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~---~-~~~~~~~~~~~~~~  212 (285)
                      +++.++..+    .....+..+...+. .+... .+.+++....   .+.|...++.....   . .+..+.....-...
T Consensus       254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~  332 (414)
T PF02897_consen  254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV  332 (414)
T ss_dssp             EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred             EEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence            888888764    23334433333443 33333 3434333322   24555556554432   1 22222221111111


Q ss_pred             ccCCCceEEEeCCC--CeEEEEEec
Q 023246          213 QGREDHSRITLTPD--VIMHVLRLQ  235 (285)
Q Consensus       213 ~~~~~~~~~~~s~d--~~i~vwd~~  235 (285)
                      ....+.+++....+  ..|+++++.
T Consensus       333 ~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  333 SLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEECCEEEEEEEECCccEEEEEECC
Confidence            11233455555555  457777777

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.0059  Score=55.12  Aligned_cols=101  Identities=15%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           72 TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        72 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                      .+..++.+ +.|.+-..|.....               ..  ...+.....+|++++| +.+|..++.|-.+|.|.+||+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL---------------~~--~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~  159 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL---------------GP--LHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDM  159 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc---------------ch--hhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEc
Confidence            33455555 57888888876531               11  1122222234999998 999999999999999999999


Q ss_pred             CCCceEEEEecccccceEeE---EcCCCCeEEEEecCCcEEEEcC
Q 023246          151 KGGKLVRLMVGDRHVVNQLE---PHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~---~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      ..++.++.+..|..+.+.+-   +..++..++++..-|.  +|.+
T Consensus       160 ~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  160 HRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            99999998887776665543   4445556777776665  5654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.80  E-value=0.18  Score=39.82  Aligned_cols=158  Identities=15%  Similarity=0.079  Sum_probs=87.7

Q ss_pred             CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCC
Q 023246           16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP   95 (285)
Q Consensus        16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~   95 (285)
                      ++.|+.|+.+| +.+++.....              .....  .+..+|..+...++-+.|+.-.|+.++++++..-...
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~--------------~~~~i--~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPS--------------KPTRI--LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPV   69 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCc--------------cceeE--eecceEEEEEEecccCEEEEEcCCccEEEEchhhccc
Confidence            37888999988 8999983221              11111  1233499999999888888877899999999765211


Q ss_pred             CCCCCCCccccCCCCceEeecccCceeeeeEE-EecCCCcEEEEecCCCeEEEEecCCC-----ceEEEEecccccceEe
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQL  169 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~~  169 (285)
                      .... .............+....   .+..++ .....+...+.......|.+|.....     +....+.- ...+..+
T Consensus        70 ~~~~-~~~~~~~~~~~~~~~~~~---~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i  144 (275)
T PF00780_consen   70 STSA-PLAFPKSRSLPTKLPETK---GVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI  144 (275)
T ss_pred             cccc-cccccccccccccccccC---CeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence            1000 000000000000111111   122222 11233444444444568888886542     34555553 3688999


Q ss_pred             EEcCCCCeEEEEecCCcEEEEcCCCCCCC
Q 023246          170 EPHPHIPMFATCGIEKTVKLWAPMPTDFP  198 (285)
Q Consensus       170 ~~~p~~~~l~t~~~d~~i~iwd~~~~~~~  198 (285)
                      +|.  ++.++.+.. +...+.|+.++...
T Consensus       145 ~~~--~~~i~v~~~-~~f~~idl~~~~~~  170 (275)
T PF00780_consen  145 AFL--GNKICVGTS-KGFYLIDLNTGSPS  170 (275)
T ss_pred             EEe--CCEEEEEeC-CceEEEecCCCCce
Confidence            998  456666664 45778888765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.19  Score=39.04  Aligned_cols=148  Identities=14%  Similarity=0.189  Sum_probs=89.7

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcE-EEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-----
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYA-RVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----   80 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-----   80 (285)
                      ..|+|+|.-+.-++.+-.-|+. .++|....+....+.      .....++ .+|.      .|||+|.+|....     
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~------s~~~RHf-yGHG------vfs~dG~~LYATEndfd~  137 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV------SQEGRHF-YGHG------VFSPDGRLLYATENDFDP  137 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe------cccCcee-eccc------ccCCCCcEEEeecCCCCC
Confidence            3566777655556666555553 457776654321111      1111222 2333      6999999887652     


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------------------
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------------------  141 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------------  141 (285)
                       -|.|-|||...+.               +.+..+..|.-.  ...+.+ .+||+.++.+..                  
T Consensus       138 ~rGViGvYd~r~~f---------------qrvgE~~t~GiG--pHev~l-m~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         138 NRGVIGVYDAREGF---------------QRVGEFSTHGIG--PHEVTL-MADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             CCceEEEEeccccc---------------ceecccccCCcC--cceeEE-ecCCcEEEEeCCceecccccCccccchhhc
Confidence             3679999998653               456667777644  667774 899998887553                  


Q ss_pred             CCeEEEEecCCCceEEE--Ee--cccccceEeEEcCCCCeEEEEecCC
Q 023246          142 CGHLFIWKKKGGKLVRL--MV--GDRHVVNQLEPHPHIPMFATCGIEK  185 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~--~~--~h~~~v~~~~~~p~~~~l~t~~~d~  185 (285)
                      .-.+.+.|..+|+++.+  +.  .+.-.|..++..+++..++.|-..|
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G  247 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG  247 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence            12355666666666533  22  3455788888888887766665443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.67  E-value=0.37  Score=41.70  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=43.5

Q ss_pred             cCCCcEEEEecCCC------------------eEEEEecCCCceEEEEecccccc------eEeEEc----CCCC---eE
Q 023246          130 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVGDRHVV------NQLEPH----PHIP---MF  178 (285)
Q Consensus       130 ~~~~~~l~~~~~dg------------------~v~vwd~~~~~~~~~~~~h~~~v------~~~~~~----p~~~---~l  178 (285)
                      ++.+..++.++.++                  .|.-+|+.+|+.+...+.-....      ....+.    -++.   .+
T Consensus       225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V  304 (488)
T cd00216         225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI  304 (488)
T ss_pred             eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence            44566677776554                  79999999999988765211111      111111    1232   47


Q ss_pred             EEEecCCcEEEEcCCCCCC
Q 023246          179 ATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       179 ~t~~~d~~i~iwd~~~~~~  197 (285)
                      +.++.+|.+...|.+++++
T Consensus       305 ~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         305 VHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             EEECCCceEEEEECCCCcE
Confidence            7788899999999988764

The alignment model contains an 8-bladed beta-propeller.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.66  E-value=0.25  Score=39.62  Aligned_cols=108  Identities=13%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             CCCCcceEEEEEecCCCEEEEe--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246           58 GKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      ..|-..-+.|+|||+++.|..+  ..+.|+-|+.......         .........+.....  ..-.++. +.+|.+
T Consensus       159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~---------~~~~~~~~~~~~~~G--~PDG~~v-DadG~l  226 (307)
T COG3386         159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP---------IGGRRGFVDFDEEPG--LPDGMAV-DADGNL  226 (307)
T ss_pred             cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc---------cCCcceEEEccCCCC--CCCceEE-eCCCCE
Confidence            3344456789999999865554  3688888877531000         000001111111111  1445665 788888


Q ss_pred             EEEecCCC-eEEEEecCCCceEEEEecccccceEeEEc-CCCCeE
Q 023246          136 VMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMF  178 (285)
Q Consensus       136 l~~~~~dg-~v~vwd~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l  178 (285)
                      .+++...| .|.+|+.. ++++..+.-+...+++++|- |+.+.|
T Consensus       227 w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L  270 (307)
T COG3386         227 WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL  270 (307)
T ss_pred             EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence            86555554 99999998 99998888776778888873 444543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.63  E-value=0.34  Score=40.77  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=27.2

Q ss_pred             cceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246           62 IHITGLAYSNTSELLISYNDELVYLFEKNMG   92 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~   92 (285)
                      +.+.++.|+.+.++++...||.+++||+...
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            6899999999888888899999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.61  E-value=0.25  Score=38.99  Aligned_cols=209  Identities=11%  Similarity=0.039  Sum_probs=107.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCC-CCCcccccccccCCCCCcceEEEE---EecCCCEEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-DTPVDTFCPRHLIGKNNIHITGLA---YSNTSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~i~---~s~~~~~l~s   78 (285)
                      ..+|..+..-|+- +.|++-+ |+.+.++++..-........ ..+-.. ..... ......+...+   -......|+.
T Consensus        35 ~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~f~~~~~~~~~~~L~v  110 (275)
T PF00780_consen   35 LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR-SLPTK-LPETKGVSFFAVNGGHEGSRRLCV  110 (275)
T ss_pred             cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccc-ccccc-ccccCCeeEEeeccccccceEEEE
Confidence            3458889988863 4544443 59999999986543211000 000000 00000 11223344444   1122346777


Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCC-CCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      +...+|.+|......            ... +..+.+...   ..+..++| .  ++.++.|.. ....+.|+.++....
T Consensus       111 a~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~-~~f~~idl~~~~~~~  171 (275)
T PF00780_consen  111 AVKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTS-KGFYLIDLNTGSPSE  171 (275)
T ss_pred             EECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeC-CceEEEecCCCCceE
Confidence            777799999887531            011 233334333   33788887 4  556666664 447788988776544


Q ss_pred             EEecc------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC----CCCCCcccceeeccccCCCceEE
Q 023246          158 LMVGD------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP----PLPDNAEKIMKANKQGREDHSRI  221 (285)
Q Consensus       158 ~~~~h------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  221 (285)
                      .+...            ..++..+.. +++.+|++  .|..-.+.+..+...+    .+..   .+.......+   +++
T Consensus       172 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~---~p~~~~~~~p---yli  242 (275)
T PF00780_consen  172 LLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSS---APQSVAYSSP---YLI  242 (275)
T ss_pred             EeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcCCCCcCcccEEEcCC---chhEEEEECC---EEE
Confidence            33211            122333333 34455543  2444455555544322    1211   1122222222   777


Q ss_pred             EeCCCCeEEEEEecccccceeEe
Q 023246          222 TLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +..+++ |.||++.+++.++.+.
T Consensus       243 ~~~~~~-iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  243 AFSSNS-IEVRSLETGELVQTIP  264 (275)
T ss_pred             EECCCE-EEEEECcCCcEEEEEE
Confidence            777755 9999999998877665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.52  E-value=0.021  Score=47.03  Aligned_cols=93  Identities=12%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             ecCCCEEEE----------ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           70 SNTSELLIS----------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        70 s~~~~~l~s----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      |||+++++.          +..+.+.++|+.++                 ....+......  +....| +|+|+.++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-----------------~~~~l~~~~~~--~~~~~~-sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-----------------EITPLTPPPPK--LQDAKW-SPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-----------------EEEESS-EETT--BSEEEE--SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-----------------ceEECcCCccc--ccccee-ecCCCeeEEE
Confidence            567775554          22467899999876                 23333322222  667775 9999999887


Q ss_pred             cCCCeEEEEecCCCceEEEEecc------------------cccceEeEEcCCCCeEEEEecC
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGD------------------RHVVNQLEPHPHIPMFATCGIE  184 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~p~~~~l~t~~~d  184 (285)
                      . ++.|+++++.+++..+ +...                  -+.-..+-|+|++++|+....|
T Consensus        61 ~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             E-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             e-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            6 5889999988774432 2211                  1123568899999998877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA03098 kelch-like protein; Provisional

Probab=96.44  E-value=0.42  Score=41.87  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             CCcEEEEecCC------CeEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecC--------CcEEEEcCCCC
Q 023246          132 NDEYVMSGSDC------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT  195 (285)
Q Consensus       132 ~~~~l~~~~~d------g~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~  195 (285)
                      +++..+.|+.+      ..+..||..+.+-..  .+....... +++ ..++..++.|+.+        ..+..||+.+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            56666777632      457888887654321  111111111 122 2245566666543        13888998876


Q ss_pred             CCCC
Q 023246          196 DFPP  199 (285)
Q Consensus       196 ~~~~  199 (285)
                      +...
T Consensus       467 ~W~~  470 (534)
T PHA03098        467 KWTE  470 (534)
T ss_pred             ceee
Confidence            6433

>PHA02713 hypothetical protein; Provisional

Probab=96.42  E-value=0.35  Score=42.51  Aligned_cols=136  Identities=9%  Similarity=0.039  Sum_probs=63.6

Q ss_pred             CCcEEEEecCCC-----eEEEEecCCCceE--EEEecccccceEeEEcCCCCeEEEEecCC-------------------
Q 023246          132 NDEYVMSGSDCG-----HLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEK-------------------  185 (285)
Q Consensus       132 ~~~~l~~~~~dg-----~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~t~~~d~-------------------  185 (285)
                      +++..+.|+.++     .+..||..+.+-.  ..+.........++.  +++..+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            577777777654     4788998765322  222211111222222  566677776542                   


Q ss_pred             ----cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC------CeEEEEEecccccceeEeeec-cccccCC
Q 023246          186 ----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYRERRY-NAADFES  254 (285)
Q Consensus       186 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~  254 (285)
                          .+..||+.+...........+.........++.+.+.|+.+      ..+..||..+......+..-+ .......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence                47778887765432221111111111112234455666543      245677766521222221111 1111112


Q ss_pred             CCCcCeEEEeecCCC
Q 023246          255 DEEEGETYLLGFSDS  269 (285)
Q Consensus       255 ~~~~~~v~~~~~~~~  269 (285)
                      ..-++.||++|-.++
T Consensus       509 ~~~~~~iyv~Gg~~~  523 (557)
T PHA02713        509 ILHDNTIMMLHCYES  523 (557)
T ss_pred             EEECCEEEEEeeecc
Confidence            223567999975555

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.41  E-value=0.47  Score=39.79  Aligned_cols=161  Identities=14%  Similarity=0.126  Sum_probs=93.3

Q ss_pred             CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCCEEEEecCCcEEEE
Q 023246           13 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYNDELVYLF   87 (285)
Q Consensus        13 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~s~~d~~i~iw   87 (285)
                      +++...+++|+..|.++||+........       -    ...+...-..+|-.+..-+     +...||.-.-..+.||
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~-------~----~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY  102 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQP-------E----DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVY  102 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCC-------c----cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEE
Confidence            4456799999999999999985443110       0    0001112245666665432     2236777778889999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE---ecCC-CcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  163 (285)
                      .+....+....       ...-.+..+..|.-......+++   -... ..++..-+.||.+.+|+-+.......+.. -
T Consensus       103 ~v~~~~g~~~~-------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen  103 SVSLVDGTVEH-------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             EEEecCCCccc-------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            88433111000       00012222333332222333332   1222 35778889999999999875443344433 3


Q ss_pred             ccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          164 HVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      --...+.++|....|++++.+..+.-|..
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            33445788888888999998888888864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.34  E-value=0.056  Score=44.53  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             cCCCcEEEEec---------CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          130 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       130 ~~~~~~l~~~~---------~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      ||++++++...         ..+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            45666665532         256789999998765543332 57889999999999988876 67899998866543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.31  E-value=0.48  Score=41.86  Aligned_cols=102  Identities=17%  Similarity=0.063  Sum_probs=59.3

Q ss_pred             cceEEEEEecCCCEEEEec-------CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC
Q 023246           62 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  132 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (285)
                      ..+...+++|+|+.++...       |.  .|.+++....                 ......+.    ....-.| +|+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----------------~~~lt~g~----~~t~PsW-spD  407 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----------------AVQVLEGH----SLTRPSW-SLD  407 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----------------ceeeecCC----CCCCceE-CCC
Confidence            3677899999998766522       43  3444454221                 21112222    1556664 999


Q ss_pred             CcEEEEecCC------------CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEE
Q 023246          133 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL  189 (285)
Q Consensus       133 ~~~l~~~~~d------------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~i  189 (285)
                      |+.+.+....            +.+.+.++..++...   ...+.|..+.|+|||..++... ++.|.+
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            8877665432            233333443332222   2245799999999999977665 477776

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.30  E-value=0.54  Score=41.42  Aligned_cols=182  Identities=12%  Similarity=0.095  Sum_probs=89.9

Q ss_pred             EEEEcCCCCcEEEEeeCC------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            8 AIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      ++++.. | .+.++|+.|      .++..||..+++....           .......+...+..    -+|.+.+. |.
T Consensus       327 ~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~-----------a~M~~~R~~~~v~~----l~g~iYavGG~  389 (571)
T KOG4441|consen  327 GVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPV-----------APMNTKRSDFGVAV----LDGKLYAVGGF  389 (571)
T ss_pred             cEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceecc-----------CCccCccccceeEE----ECCEEEEEecc
Confidence            344444 3 789999998      3566788877763211           01110111112222    24555555 44


Q ss_pred             CC-----cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC------eEEEEe
Q 023246           81 DE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG------HLFIWK  149 (285)
Q Consensus        81 d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~v~vwd  149 (285)
                      ||     ++-.||..+.              .|..+..+......  ...+   .-++...++|+.++      .+..||
T Consensus       390 dg~~~l~svE~YDp~~~--------------~W~~va~m~~~r~~--~gv~---~~~g~iYi~GG~~~~~~~l~sve~YD  450 (571)
T KOG4441|consen  390 DGEKSLNSVECYDPVTN--------------KWTPVAPMLTRRSG--HGVA---VLGGKLYIIGGGDGSSNCLNSVECYD  450 (571)
T ss_pred             ccccccccEEEecCCCC--------------cccccCCCCcceee--eEEE---EECCEEEEEcCcCCCccccceEEEEc
Confidence            54     3777887665              22222222221111  2222   23677778887554      467888


Q ss_pred             cCCCce--EEEEecccccceEeEEcCCCCeEEEEecCC-----cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE
Q 023246          150 KKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       150 ~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                      ..+.+-  +..+..-..... ++. -++...+.||.|+     +|..||+.+.....+.....+.........++.+.+.
T Consensus       451 P~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v  528 (571)
T KOG4441|consen  451 PETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV  528 (571)
T ss_pred             CCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE
Confidence            776543  333332222222 222 2566777888776     3778998877654332222111111112234456677


Q ss_pred             eCCCC
Q 023246          223 LTPDV  227 (285)
Q Consensus       223 ~s~d~  227 (285)
                      |..|+
T Consensus       529 GG~~~  533 (571)
T KOG4441|consen  529 GGFDG  533 (571)
T ss_pred             ecccC
Confidence            77663

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.25  E-value=0.2  Score=40.00  Aligned_cols=154  Identities=14%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      +.+..+.-++++ .+++++..-....-|+.-....             .+..  .....+|..+.|.|++.+.+.+..+.
T Consensus       145 gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  145 GSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             --EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTTE
T ss_pred             ceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCcE
Confidence            457778888875 7888776655556677542211             1111  22457899999999998877778888


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec--
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--  161 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--  161 (285)
                      |+.=+.....            ..+.. ...........+..++| .++++..++|+. |.+ +.....|+.=.....  
T Consensus       209 ~~~s~~~~~~------------~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~  272 (302)
T PF14870_consen  209 IQFSDDPDDG------------ETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE  272 (302)
T ss_dssp             EEEEE-TTEE------------EEE----B-TTSS--S-EEEEEE-SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT
T ss_pred             EEEccCCCCc------------ccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeCC-ccE-EEeCCCCccceECcccc
Confidence            8877621110            00000 00111112223788997 777777776664 444 334555655443332  


Q ss_pred             -ccccceEeEEcCCCCeEEEEecCCcEEEE
Q 023246          162 -DRHVVNQLEPHPHIPMFATCGIEKTVKLW  190 (285)
Q Consensus       162 -h~~~v~~~~~~p~~~~l~t~~~d~~i~iw  190 (285)
                       -...++.+.|.+..+-++.| .+|.|.-|
T Consensus       273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence             23457788887665556554 57776544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.20  E-value=0.35  Score=41.56  Aligned_cols=124  Identities=8%  Similarity=0.043  Sum_probs=72.9

Q ss_pred             CCcceEEEEEecCC-----CEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCcee--eeeEEEecC
Q 023246           60 NNIHITGLAYSNTS-----ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQT--VKGVNFFGP  131 (285)
Q Consensus        60 h~~~v~~i~~s~~~-----~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--i~~~~~~~~  131 (285)
                      .-..|..+.|.|-+     .+||.-..+.|.||.+....         .+-.  +.+..-.. ...+-+  -.++. |+|
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~---------~e~~--K~l~sQtcEi~e~~pvLpQGCV-WHP  122 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST---------TERN--KLLMSQTCEIREPFPVLPQGCV-WHP  122 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc---------cccc--cceeeeeeeccCCcccCCCccc-ccC
Confidence            34578999999964     37777889999999996331         0000  11111111 111011  12344 689


Q ss_pred             CCcEEEEecCCCeEEEEecCC--CceEEEEecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC
Q 023246          132 NDEYVMSGSDCGHLFIWKKKG--GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD  196 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~  196 (285)
                      ....++.-.....-.+++++.  ......++ ..+.|.|.+|.+||+.|+.+- ..=.-++||-....
T Consensus       123 k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  123 KKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             CCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence            888876655444444555442  33334454 467899999999999966553 33356789865543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.16  E-value=0.025  Score=30.13  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=27.9

Q ss_pred             cceeEEEEcCCCC--cEEEEeeCCCcEEEEEccCC
Q 023246            4 IRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKC   36 (285)
Q Consensus         4 ~~v~~~~~s~~~~--~~l~tg~~dg~v~iwd~~~~   36 (285)
                      +.|.++.|+|.+.  .+|+..-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998665  69999989999999999853

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.00  E-value=0.49  Score=39.26  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=37.3

Q ss_pred             eeeEEEecCCCcEEEEecC-------------------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec
Q 023246          123 VKGVNFFGPNDEYVMSGSD-------------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~-------------------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~  183 (285)
                      ...+.+ .|+|.+.++-+.                   .|.|.-++...++......++ .....++|+|+++++++-..
T Consensus       126 ~~~l~~-gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       126 LNSLAW-GPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             ccCceE-CCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence            677886 899887665441                   145666666644432222232 34578999999988776553


Q ss_pred             C
Q 023246          184 E  184 (285)
Q Consensus       184 d  184 (285)
                      +
T Consensus       204 ~  204 (367)
T TIGR02604       204 D  204 (367)
T ss_pred             C
Confidence            3

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.95  E-value=0.59  Score=36.65  Aligned_cols=166  Identities=11%  Similarity=0.100  Sum_probs=97.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .|.++.|+|+. +.|++......-.|+=-..|+++..+.         ...     -.....|.+..++++.++-. +..
T Consensus        87 nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiP---------L~g-----~~DpE~Ieyig~n~fvi~dER~~~  151 (316)
T COG3204          87 NVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIP---------LTG-----FSDPETIEYIGGNQFVIVDERDRA  151 (316)
T ss_pred             cccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEec---------ccc-----cCChhHeEEecCCEEEEEehhcce
Confidence            48899999986 666666666666666666676543321         111     12344678888888888875 899


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEee--cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce---EEE
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VRL  158 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---~~~  158 (285)
                      +.++.+........       ..  ...-.+.  .+. ......++| ++..+.+..+-+..-+.+|....+..   ++.
T Consensus       152 l~~~~vd~~t~~~~-------~~--~~~i~L~~~~k~-N~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~  220 (316)
T COG3204         152 LYLFTVDADTTVIS-------AK--VQKIPLGTTNKK-NKGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA  220 (316)
T ss_pred             EEEEEEcCCccEEe-------cc--ceEEeccccCCC-CcCceeeec-CCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence            99988875521000       00  0001111  111 134788996 99888888888777777776653321   111


Q ss_pred             Eecc-------cccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC
Q 023246          159 MVGD-------RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       159 ~~~h-------~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      ...+       -..|.++.|++. +..++-+.+++.+.-.|..+..
T Consensus       221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            1111       134677788764 4456666677777777766553

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.78  E-value=0.025  Score=42.23  Aligned_cols=66  Identities=8%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             CCcEEEEecCCCeEEEEecCC-CceEEEEecccccce-EeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          132 NDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      -+..+++|+.+|.|++|.... ++.......-...|. .+.--.++.+..+++.|+.|+.|+....+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce
Confidence            456788999999999998762 221111111112222 222233455788899999999999877664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.73  E-value=0.099  Score=39.74  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=52.0

Q ss_pred             EcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcC
Q 023246           11 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKN   90 (285)
Q Consensus        11 ~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~   90 (285)
                      +...+ .+|++-+.+|.+++||+.+++....-..-.|+-.... .........|..+.++.+|.-+++-++|..+.|+..
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-cccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            33443 6788899999999999998875432211111100000 000145678999999999988888777889999976


Q ss_pred             CC
Q 023246           91 MG   92 (285)
Q Consensus        91 ~~   92 (285)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.71  E-value=0.76  Score=36.08  Aligned_cols=118  Identities=8%  Similarity=0.111  Sum_probs=77.4

Q ss_pred             CCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246           59 KNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  137 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  137 (285)
                      +-...+.++.|+|+.+.|++ .+...-.|+=...+                +.++++.-..- .....+.| -.++++++
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fvi  144 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFVI  144 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEEE
Confidence            33445999999999987766 45444444444444                45555542211 11455776 67788888


Q ss_pred             EecCCCeEEEEecCCCceEEE-------Ee--cc-cccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          138 SGSDCGHLFIWKKKGGKLVRL-------MV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       138 ~~~~dg~v~vwd~~~~~~~~~-------~~--~h-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      +--.++.++++.+.....+..       +.  .+ +.....++|+|..+.|..+-+-.=++||....
T Consensus       145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            888899999988765432211       11  12 45678899999999988888777777776643

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=1.1  Score=37.42  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=72.3

Q ss_pred             CCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           58 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      ....++|.+|.||+|.+.+|.- .+.+|.+++.....            ......++.+...  ..|.+..| ..+ .-+
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~------------~~l~~~~~ck~k~--~~IlGF~W-~~s-~e~  126 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN------------SQLEYTQECKTKN--ANILGFCW-TSS-TEI  126 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc------------hhhHHHHHhccCc--ceeEEEEE-ecC-eeE
Confidence            3446699999999999999994 69999999985431            0001111112222  23888875 555 444


Q ss_pred             EEecCCCeEEEEecC-CCceEEEEecccccceEeEEcCCCCeEEEE-e-cCCcEEEEcCCCC
Q 023246          137 MSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATC-G-IEKTVKLWAPMPT  195 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~-~d~~i~iwd~~~~  195 (285)
                      +..+..| +-+|-.. ....++..+.|.-.|+-..|+|+-+.++-+ + ..+++.=+.++++
T Consensus       127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            4444333 4444432 244566667788889999999988873333 3 3344444444443

>PHA02790 Kelch-like protein; Provisional

Probab=95.33  E-value=1.7  Score=37.60  Aligned_cols=61  Identities=7%  Similarity=-0.051  Sum_probs=31.9

Q ss_pred             CCcEEEEecCCC---eEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          132 NDEYVMSGSDCG---HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       132 ~~~~l~~~~~dg---~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      +++..+.|+.++   .+..||.++.+-..  .+.........++  -+++..+.|+   .+.+||+++...
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W  427 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTW  427 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcE
Confidence            577777777543   46678876543222  1111111112222  2455555553   577899877654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.20  E-value=0.57  Score=39.20  Aligned_cols=87  Identities=16%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             CCCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC----
Q 023246           58 GKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----  132 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  132 (285)
                      ......+.+|+.+|.+++.|+.. =|.|.++|+..+                ..++.+++.++... .-+......    
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAqc-~wi~~~~~~~~~~  366 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQC-GWIEVPEEGDRDR  366 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccceE-EEEEeeccccccc
Confidence            34456788999999998888864 699999999988                56666776665321 111100111    


Q ss_pred             ------------CcE-EEEecCCCeEEEEecCCCceEEEEec
Q 023246          133 ------------DEY-VMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus       133 ------------~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                                  ..+ ++-+-.-|.|-||.+++|..+..+..
T Consensus       367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence                        112 33466789999999999988877764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.19  E-value=0.4  Score=36.27  Aligned_cols=108  Identities=12%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEE--ccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCc
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDEL   83 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~   83 (285)
                      ++++|+.+...+.++-+.+-+|.-||  ..+|...+....    .  .++..........-.++...+|.+.++ -+.++
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i----~--dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI----F--DLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCccee----E--EeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence            46888876545556667778887787  667764432110    0  000000000011123444567776555 47899


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      |...|..++                +.+..+.-....  +++++|-.++-..+++
T Consensus       235 V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  235 VQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV  271 (310)
T ss_pred             EEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence            999999998                788888877755  9999985454444443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.14  E-value=1.3  Score=39.14  Aligned_cols=110  Identities=7%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             eEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe-cCCCcEEEEecC
Q 023246           64 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSD  141 (285)
Q Consensus        64 v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~  141 (285)
                      .+-+.-+.-++..+.. +...+.|||...+.              .+.-..| ...  ..|.++.|. .|+++.+++.+.
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--------------lE~~~~f-~~~--~~I~dLDWtst~d~qsiLaVGf   94 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV--------------LEYEESF-SED--DPIRDLDWTSTPDGQSILAVGF   94 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcE--------------EEEeeee-cCC--CceeeceeeecCCCCEEEEEEc
Confidence            3344444444544443 46789999998761              0111222 122  338999863 478999999999


Q ss_pred             CCeEEEEecC---------CCceEEEE--eccc-ccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          142 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       142 dg~v~vwd~~---------~~~~~~~~--~~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      .+.|.+|.-.         ...++..+  ..|+ .+|.+..|.++|..++.++  ..+.+++-
T Consensus        95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            9999998631         11233333  2344 6799999999998766554  57888875

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.11  E-value=1.2  Score=34.82  Aligned_cols=101  Identities=11%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             EEEEEecCCCE-EEEe-c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           65 TGLAYSNTSEL-LISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        65 ~~i~~s~~~~~-l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      ..++|+|.... ++-+ . .....++|.+..                +.+.++...++....-.=.| +++|.+|+..-.
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATEn  133 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATEN  133 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeecC
Confidence            35777776643 3334 3 344678888776                44444443333222222234 999999987543


Q ss_pred             -----CCeEEEEecCCC-ceEEEEecccccceEeEEcCCCCeEEEEe
Q 023246          142 -----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       142 -----dg~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                           -|.|=+||.+.+ +.+.++..|.-....+.|.+||+.++.+.
T Consensus       134 dfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         134 DFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence                 478999998743 45677888887888899999999987765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.14  Score=43.21  Aligned_cols=60  Identities=13%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM   91 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~   91 (285)
                      -++|+|+.+|.||+||- .+.              ..++.+.+-..+|..|..+.+|+++++..+..+.+.++.-
T Consensus       442 G~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  442 GYIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ceEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            48999999999999997 444              4445557778899999999999999988888888888754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.98  E-value=1.6  Score=35.37  Aligned_cols=160  Identities=9%  Similarity=0.053  Sum_probs=87.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEEcc-CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEecCCcEEEEEcC
Q 023246           13 PRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKN   90 (285)
Q Consensus        13 ~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~~d~~i~iwd~~   90 (285)
                      |.++.-|.+-|.||++.-..+. .|+....          ....+...+...+..-+++..+ .++..+-+|.|+--|+.
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~----------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQK----------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEEEE----------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEeEe----------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence            4344678888999999999887 3442100          0011111112122233445443 46666778888888886


Q ss_pred             CCCCCCCCCCCCccccCCCCceEeecc------cCc--eeeeeEEEecCCCcEEEEecC--C-------CeEEEEecCCC
Q 023246           91 MGLGPSPLSLSPEDLQKREEPQVYSGH------RNS--QTVKGVNFFGPNDEYVMSGSD--C-------GHLFIWKKKGG  153 (285)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~i~~~~~~~~~~~~l~~~~~--d-------g~v~vwd~~~~  153 (285)
                      ....              +....+...      ...  ....-++++.+.+++.+....  +       ..|.++|+.++
T Consensus       214 g~~~--------------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~  279 (342)
T PF06433_consen  214 GDSA--------------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH  279 (342)
T ss_dssp             TSSE--------------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred             CCcc--------------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC
Confidence            5410              011111100      000  013345653334444433211  1       25888899999


Q ss_pred             ceEEEEecccccceEeEEcCCCC-eEEEE-ecCCcEEEEcCCCCCC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIP-MFATC-GIEKTVKLWAPMPTDF  197 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~-~l~t~-~~d~~i~iwd~~~~~~  197 (285)
                      +.+..+.. ..++.+|+.+.+.+ +|++. ..++.+.+||..++++
T Consensus       280 krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  280 KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            99998874 34688999998766 45544 4578999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.87  E-value=1.9  Score=39.60  Aligned_cols=151  Identities=9%  Similarity=0.071  Sum_probs=91.2

Q ss_pred             ceEEEEEecC-CCEEEEec-----------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec
Q 023246           63 HITGLAYSNT-SELLISYN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  130 (285)
Q Consensus        63 ~v~~i~~s~~-~~~l~s~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  130 (285)
                      .+.++.|..| +.+++.|.           .|.|.+|.....                +.++....+.-...+.++.-  
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----------------~~L~~v~e~~v~Gav~aL~~--  837 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----------------NSLELVAETVVKGAVYALVE--  837 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC----------------Cceeeeeeeeeccceeehhh--
Confidence            4556668777 45665542           256778877653                34444433332223555542  


Q ss_pred             CCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CCCCCC--Cccc
Q 023246          131 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD--NAEK  206 (285)
Q Consensus       131 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~--~~~~  206 (285)
                      -+|+++|.-  ...|++|++.+.+.++.-..|..++..+...-.+..++.|..-+.+.+...+..+  +..+..  +..+
T Consensus       838 fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~W  915 (1096)
T KOG1897|consen  838 FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNW  915 (1096)
T ss_pred             hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccc
Confidence            467777644  4789999998887777777788899999988889999999888877776554333  322211  2222


Q ss_pred             ceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          207 IMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       207 ~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ....  ...+.+.++-+..+|.+++....
T Consensus       916 mtav--eil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  916 MTAV--EILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eeeE--EEecCceEEeecccccEEEEEec
Confidence            2221  11233445555666777776544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.86  E-value=1.3  Score=35.48  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             CcceEEEEEecCCCEEEEecCCcEE-EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           61 NIHITGLAYSNTSELLISYNDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      .+.+..+..+++|++++.+..|.+. -|+....                 ....+... ....|..+.| .+++.+.+.+
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-----------------~w~~~~r~-~~~riq~~gf-~~~~~lw~~~  204 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-----------------TWQPHNRN-SSRRIQSMGF-SPDGNLWMLA  204 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-----------------S-EEEE---SSS-EEEEEE--TTS-EEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCc-----------------cceEEccC-ccceehhcee-cCCCCEEEEe
Confidence            4568888889999999998866654 6665422                 22222221 2244999998 8998776655


Q ss_pred             cCCCeEEEEecCCCceEEEEec-------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                       ..|.|++=+..  .....+..       ..-.+..++|.+++...++|+ .|.+ +.....++
T Consensus       205 -~Gg~~~~s~~~--~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  205 -RGGQIQFSDDP--DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             -TTTEEEEEE-T--TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred             -CCcEEEEccCC--CCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence             78888887721  12222221       223478899999887777666 4544 33444444

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.72  E-value=0.0042  Score=51.38  Aligned_cols=143  Identities=15%  Similarity=0.182  Sum_probs=96.0

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCCcEEE
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYL   86 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~~i~i   86 (285)
                      ..|-|.+.+ ++.++.+..|..||-......                 ....++..-.++|..++..++. + ..+.+.+
T Consensus        40 ~~w~~e~~n-lavaca~tiv~~YD~agq~~l-----------------e~n~tg~aldm~wDkegdvlavlAek~~piyl  101 (615)
T KOG2247|consen   40 HRWRPEGHN-LAVACANTIVIYYDKAGQVIL-----------------ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYL  101 (615)
T ss_pred             eeEecCCCc-eehhhhhhHHHhhhhhcceec-----------------ccCCchhHhhhhhccccchhhhhhhcCCCeee
Confidence            567787644 777777888888886533211                 0122445567888888876555 4 4899999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  166 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  166 (285)
                      ||+.+.                 ..+.+......  -.++.-|++....++.+...|.+.+++..+...+..+-.|...+
T Consensus       102 wd~n~e-----------------ytqqLE~gg~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRg  162 (615)
T KOG2247|consen  102 WDVNSE-----------------YTQQLESGGTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRG  162 (615)
T ss_pred             chhhhh-----------------hHHHHhccCcc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccce
Confidence            999875                 33333322211  22222258888899999999999999998777766666688999


Q ss_pred             eEeEEcCCCCeEEEEecCCcEEE
Q 023246          167 NQLEPHPHIPMFATCGIEKTVKL  189 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~~d~~i~i  189 (285)
                      .+++|.+.+. .+.++.|..+.+
T Consensus       163 tq~av~lEd~-vil~dcd~~L~v  184 (615)
T KOG2247|consen  163 TQIAVTLEDY-VILCDCDNTLSV  184 (615)
T ss_pred             eEEEecccce-eeecCcHHHHHH
Confidence            9999998764 455555654443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.53  E-value=0.041  Score=49.19  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=66.7

Q ss_pred             cCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeE-----------EcCCCCeEEEEecCCcEEEEcCC--C--
Q 023246          130 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE-----------PHPHIPMFATCGIEKTVKLWAPM--P--  194 (285)
Q Consensus       130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~-----------~~p~~~~l~t~~~d~~i~iwd~~--~--  194 (285)
                      -++.-++..+-.++.+++........ ..+.+|...+..++           .+|||..|++++.||.+++|.+-  +  
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~  270 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI  270 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence            34566777788888888877654332 33345665554443           68999999999999999999862  2  


Q ss_pred             --CCCCCCCCCcc-cceeeccccCC--------CceEEEeCC-CCeEEEEEecccccc
Q 023246          195 --TDFPPLPDNAE-KIMKANKQGRE--------DHSRITLTP-DVIMHVLRLQRRQTL  240 (285)
Q Consensus       195 --~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~s~-d~~i~vwd~~~~~~~  240 (285)
                        .+++.++.|.+ +.++..+....        -.++++++. +..+++|.....+.+
T Consensus       271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence              12455665652 22222211110        123444443 477899987665554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.51  E-value=0.33  Score=36.92  Aligned_cols=67  Identities=16%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             cCCCcEEEEecCCCeEEEEecCCCceEEEE-------e-------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          130 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       130 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-------~-------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      ..++.++++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|....|+..-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            446888999999999999999987764322       1       2446788888998888777766 578899987765


Q ss_pred             CC
Q 023246          196 DF  197 (285)
Q Consensus       196 ~~  197 (285)
                      ..
T Consensus        98 ~W   99 (219)
T PF07569_consen   98 CW   99 (219)
T ss_pred             ee
Confidence            53

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.48  E-value=0.15  Score=27.21  Aligned_cols=31  Identities=13%  Similarity=0.043  Sum_probs=25.4

Q ss_pred             ccceEeEEcCCCC---eEEEEecCCcEEEEcCCC
Q 023246          164 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       164 ~~v~~~~~~p~~~---~l~t~~~d~~i~iwd~~~  194 (285)
                      +.|.++.|+|...   +|+.+-..+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998554   677777889999999985

It contains a characteristic DLL sequence motif.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.32  E-value=3  Score=39.65  Aligned_cols=148  Identities=10%  Similarity=0.103  Sum_probs=84.5

Q ss_pred             EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE--------ecCCC-EEEEecCCcEEEEEcCC
Q 023246           21 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY--------SNTSE-LLISYNDELVYLFEKNM   91 (285)
Q Consensus        21 tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~--------s~~~~-~l~s~~d~~i~iwd~~~   91 (285)
                      --+.|+.+.+|++.++.....+               .+-...|..+..        .|.=+ +|+.+.--.|.++-+.-
T Consensus        94 WiTiDn~L~lWny~~~~e~~~~---------------d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~  158 (1311)
T KOG1900|consen   94 WITIDNNLFLWNYESDNELAEY---------------DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF  158 (1311)
T ss_pred             EEEeCCeEEEEEcCCCCccccc---------------cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence            3466899999999985422111               222333433332        22222 45556666777776654


Q ss_pred             CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEE--EEecCCC---c-e----------
Q 023246           92 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF--IWKKKGG---K-L----------  155 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~--vwd~~~~---~-~----------  155 (285)
                      ...+....+         ....+.-..++..|.++.+ ..+|+.+++|-++ .|+  +|....+   + +          
T Consensus       159 ~~~~~~~~~---------f~~~~~i~~dg~~V~~I~~-t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~l  227 (1311)
T KOG1900|consen  159 DEFTGELSI---------FNTSFKISVDGVSVNCITY-TENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVL  227 (1311)
T ss_pred             ccccCcccc---------cccceeeecCCceEEEEEe-ccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHH
Confidence            321111110         1111232344455889986 7888888776654 443  2222211   1 0          


Q ss_pred             ------EEEEe-cccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          156 ------VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       156 ------~~~~~-~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                            +..+. .+..+|..+++......+.+-+..++|.+|++..
T Consensus       228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence                  11223 4567999999988888899999999999999854

>PRK13684 Ycf48-like protein; Provisional

Probab=94.20  E-value=2.6  Score=34.49  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEE-EEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARV-YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      +.+.++.+.|++ .++++|. .|.+.. ++- .++.            +...  ...-...++++.+.++++.++.+..|
T Consensus       173 g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~~-gg~t------------W~~~--~~~~~~~l~~i~~~~~g~~~~vg~~G  235 (334)
T PRK13684        173 GVVRNLRRSPDG-KYVAVSS-RGNFYSTWEP-GQTA------------WTPH--QRNSSRRLQSMGFQPDGNLWMLARGG  235 (334)
T ss_pred             ceEEEEEECCCC-eEEEEeC-CceEEEEcCC-CCCe------------EEEe--eCCCcccceeeeEcCCCCEEEEecCC
Confidence            457788888864 5555544 454432 121 1110            0111  12234578899999999988888888


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec-
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-  161 (285)
                      .+.+=....+.             .++.+. .........+.++.+ .++++.++++ .+|.+.. ....++.-..... 
T Consensus       236 ~~~~~s~d~G~-------------sW~~~~-~~~~~~~~~l~~v~~-~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~  298 (334)
T PRK13684        236 QIRFNDPDDLE-------------SWSKPI-IPEITNGYGYLDLAY-RTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVG  298 (334)
T ss_pred             EEEEccCCCCC-------------cccccc-CCccccccceeeEEE-cCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcC
Confidence            76532233330             111111 110001123777886 7777655544 5676653 3444443333321 


Q ss_pred             --ccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          162 --DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       162 --h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                        -....+.+.|..+++.++ .+..|.|--|+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        299 EEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             CCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence              123466777776666655 445788877764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.16  E-value=2.2  Score=33.38  Aligned_cols=161  Identities=11%  Similarity=0.011  Sum_probs=88.5

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .+.+.++++++..+.+....++.-.||-...+.              .......  ...+....|++++...+.. .+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~   88 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG   88 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence            577899999874444444344444555544333              1111111  2367788999998766664 3555


Q ss_pred             EEEEE-cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEEecC---CC---
Q 023246           84 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG---  153 (285)
Q Consensus        84 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vwd~~---~~---  153 (285)
                      .+++. ...+.               .....+........|..+.+ +|+|..++...   .++.|.+--+.   .+   
T Consensus        89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~  152 (253)
T PF10647_consen   89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR  152 (253)
T ss_pred             eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence            55553 22220               11111111111014999997 99999887654   45777776533   23   


Q ss_pred             ---ceEEEEecccccceEeEEcCCCCeEEEEe-cCCcEEE-EcCCCCCC
Q 023246          154 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTDF  197 (285)
Q Consensus       154 ---~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~i-wd~~~~~~  197 (285)
                         ..+.........+..++|.+++.+++.+. .+..+.. ........
T Consensus       153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~  201 (253)
T PF10647_consen  153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPS  201 (253)
T ss_pred             eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCcc
Confidence               11222223346889999999998855554 3443444 44444443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.11  E-value=0.59  Score=43.40  Aligned_cols=153  Identities=8%  Similarity=0.017  Sum_probs=89.3

Q ss_pred             ccceeEEEEcCCCCcEEEEee--CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s   78 (285)
                      ..+|..+...+|. ...++..  .+-.|..||+++-....... ..++   +...+......-..++.|.|.=.  .++.
T Consensus       100 ~~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl---~~s~ts~ek~vf~~~~~wnP~vp~n~av~  174 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPL---KNSATSFEKPVFQLKNVWNPLVPLNSAVD  174 (1405)
T ss_pred             cccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh-cccc---ccccchhccccccccccccCCccchhhhh
Confidence            3456667777764 4433332  33367889988654322111 1111   11112122234456788888643  4444


Q ss_pred             ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           79 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        79 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      ..|+.|++..+....               .....+.- .  ...++++| +|.|+.++.|-..|++.-|... ++....
T Consensus       175 l~dlsl~V~~~~~~~---------------~~v~s~p~-t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~  234 (1405)
T KOG3630|consen  175 LSDLSLRVKSTKQLA---------------QNVTSFPV-T--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSE  234 (1405)
T ss_pred             ccccchhhhhhhhhh---------------hhhcccCc-c--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeec
Confidence            569999888775431               12222222 2  22788885 9999999999999999988654 444443


Q ss_pred             Eec----ccccceEeEEcCCCCeEEE
Q 023246          159 MVG----DRHVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       159 ~~~----h~~~v~~~~~~p~~~~l~t  180 (285)
                      +..    ....|.+|.|--...+++.
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEE
Confidence            332    1367999999877666543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.03  E-value=3.9  Score=35.86  Aligned_cols=48  Identities=10%  Similarity=0.013  Sum_probs=30.4

Q ss_pred             ceEEEeCCCCeEEEEEecccccceeEeeeccccc-cCCCCCcCeEEEee
Q 023246          218 HSRITLTPDVIMHVLRLQRRQTLAYRERRYNAAD-FESDEEEGETYLLG  265 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~  265 (285)
                      .+++.++.+|.++.+|.++++.+-.......... ......+|++|++.
T Consensus       473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~  521 (527)
T TIGR03075       473 DLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAV  521 (527)
T ss_pred             cEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEE
Confidence            4667788899999999999988765543221111 11112456788764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA03098 kelch-like protein; Provisional

Probab=94.00  E-value=2.9  Score=36.70  Aligned_cols=64  Identities=17%  Similarity=0.190  Sum_probs=33.8

Q ss_pred             CCcEEEEecCC-----CeEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecC------CcEEEEcCCCCCC
Q 023246          132 NDEYVMSGSDC-----GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPTDF  197 (285)
Q Consensus       132 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~~~~  197 (285)
                      +++..+.|+.+     ..+..||..+.+-..  .+....... +++. -+++..+.||.+      ..+..||+.+...
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            56677777764     347778876554221  111111111 1222 245666666632      3578899876654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.87  E-value=2.5  Score=33.00  Aligned_cols=151  Identities=10%  Similarity=0.109  Sum_probs=81.6

Q ss_pred             EEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246            8 AIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY   85 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~   85 (285)
                      .+.|..++ .++-+.+.-|  .|+.+|+.+++.......+.              ..--..++...+.-+..+=.++...
T Consensus        49 GL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   49 GLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------RYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------T--EEEEEEETTEEEEEESSSSEEE
T ss_pred             cEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------cccceeEEEECCEEEEEEecCCeEE
Confidence            46664544 6666666655  68889999987432211111              1112234444332233334689999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc--
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR--  163 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--  163 (285)
                      +||..+.                +.+.++.-...   =..++.   +++.|+.......++++|..+.+....+....  
T Consensus       114 ~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g  171 (264)
T PF05096_consen  114 VYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG  171 (264)
T ss_dssp             EEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred             EEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECC
Confidence            9999876                56666654332   456653   56667766768899999988877766664321  


Q ss_pred             ---ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          164 ---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       164 ---~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                         ..++-+.|- +|...|-.=....|...|+.++.
T Consensus       172 ~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  172 RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred             EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence               234455554 44444444344455555665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.43  E-value=2.1  Score=36.55  Aligned_cols=142  Identities=10%  Similarity=0.109  Sum_probs=82.4

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--------CEEEEecCCcEEEEE
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------ELLISYNDELVYLFE   88 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--------~~l~s~~d~~i~iwd   88 (285)
                      -++..|.....+.-.|+..|+.+..|...               .. | -+.|.|..        +.|+.-++..|.-.|
T Consensus       481 li~~dg~~~~kLykmDIErGkvveeW~~~---------------dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrID  543 (776)
T COG5167         481 LIYLDGGERDKLYKMDIERGKVVEEWDLK---------------DD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRID  543 (776)
T ss_pred             eEEecCCCcccceeeecccceeeeEeecC---------------Cc-c-eeecCCchhHHhcCccceEEeecccceEEec
Confidence            34555666677777888888755444322               21 2 44555532        345555666665556


Q ss_pred             cCCCCCCCCCCCCCccccCCCCce--EeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQ--VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV  166 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  166 (285)
                      .+...               ..+.  .++.........+..  .....+++.++..|-|++||.-.......+.+-...|
T Consensus       544 PR~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aI  606 (776)
T COG5167         544 PRARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAI  606 (776)
T ss_pred             ccccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeehhhcchhhhcCcccccce
Confidence            54330               1111  111111111133332  3456799999999999999965433444455666788


Q ss_pred             eEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          167 NQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       167 ~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      ..+....+|++++..|. ..+.+-|+.
T Consensus       607 k~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         607 KHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             eeeEeecCCcEEEEeec-ceEEEEecc
Confidence            89999999999555553 456666653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.41  E-value=3.3  Score=32.97  Aligned_cols=169  Identities=14%  Similarity=0.103  Sum_probs=86.9

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcce-EEEEEecC--CCEEEEe--cCCcEEEEEcCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSNT--SELLISY--NDELVYLFEKNM   91 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~i~~s~~--~~~l~s~--~d~~i~iwd~~~   91 (285)
                      ..++.++.||+|.-|...-+....       ..  ....+-......| ..+++...  +.+|...  ..++|.|||-.-
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~-------~~--~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRM-------TR--AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccc-------cc--cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            346778899999999864332100       00  0000001112233 34555543  4566655  389999998764


Q ss_pred             CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec--ccccceEe
Q 023246           92 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQL  169 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~~~  169 (285)
                      ..-..+..+....++-.--..-+..-.....|+-..- +++.+.=+.|..-|.|-+||+. |+.++.+..  .-.....|
T Consensus       172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~  249 (336)
T TIGR03118       172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGL  249 (336)
T ss_pred             ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCcee
Confidence            4211111111111111000000111111111222221 4444445556667899999997 888888742  23455667


Q ss_pred             EEcC------CCCeEEEEecCCcEEEEcCCCCC
Q 023246          170 EPHP------HIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       170 ~~~p------~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +..|      .+.+|+--=.||+|..+|+.++.
T Consensus       250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             eeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence            7755      34555555579999999998665

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.29  E-value=3.1  Score=36.97  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=62.0

Q ss_pred             EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCC-EEEEecCCcEEEEEcCCCCCCCC
Q 023246           21 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSE-LLISYNDELVYLFEKNMGLGPSP   97 (285)
Q Consensus        21 tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~-~l~s~~d~~i~iwd~~~~~~~~~   97 (285)
                      +-+....+.|||...+.+..             ... ....+.|.++.|..  +++ .|+.|-...|.++......-.  
T Consensus        46 V~~~~~~LtIWD~~~~~lE~-------------~~~-f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~--  109 (631)
T PF12234_consen   46 VDSSRSELTIWDTRSGVLEY-------------EES-FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT--  109 (631)
T ss_pred             EECCCCEEEEEEcCCcEEEE-------------eee-ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh--
Confidence            33344578999998776321             111 14467899999864  666 455588999999976432100  


Q ss_pred             CCCCCccccCCCCceEe--ecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           98 LSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        98 ~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                           ...+.+..++.+  ..++. .+|.+..| -++|.+++.++  +.+.|+|-
T Consensus       110 -----~~~p~w~~i~~i~i~~~T~-h~Igds~W-l~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 -----NKGPSWAPIRKIDISSHTP-HPIGDSIW-LKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             -----cCCcccceeEEEEeecCCC-CCccceeE-ecCCeEEEEeC--CEEEEECC
Confidence                 111222333333  22331 23888885 88887776554  67888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.18  E-value=6.6  Score=35.81  Aligned_cols=69  Identities=16%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEecCC----------Cce---EEEEe--------cccccceEeEEcCC---CCeE
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----------GKL---VRLMV--------GDRHVVNQLEPHPH---IPMF  178 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------~~~---~~~~~--------~h~~~v~~~~~~p~---~~~l  178 (285)
                      |..+.. +++|.+++..+..|.+. ..+..          |+.   .+++.        .+...|..+.|+|.   +.+|
T Consensus        87 v~~i~~-n~~g~~lal~G~~~v~V-~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   87 VHQISL-NPTGSLLALVGPRGVVV-LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             EEEEEE-CCCCCEEEEEcCCcEEE-EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            888887 99999998888766443 33321          111   11221        23457889999996   4678


Q ss_pred             EEEecCCcEEEEcCC
Q 023246          179 ATCGIEKTVKLWAPM  193 (285)
Q Consensus       179 ~t~~~d~~i~iwd~~  193 (285)
                      +.-..|+++|+||+.
T Consensus       165 ~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  165 VVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEecCCEEEEEecC
Confidence            888889999999985

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.10  E-value=4  Score=37.65  Aligned_cols=126  Identities=12%  Similarity=0.140  Sum_probs=74.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCccc--CCcCCCCCccccccccc-C-CCCCcceEEEEEecCCCEEEEe
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY--SPISSDTPVDTFCPRHL-I-GKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~-~-~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+...++|+|.....||.....|...||++......  ..+....   ... ..+ . ......-..|.|.++.+.|+.+
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~---~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~  221 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR---NIS-GSIIFDPEELSNWKRILWVSDSNRLLVC  221 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc---CCC-ccccCCCcccCcceeeEecCCCCEEEEE
Confidence            456689999987789999999999999999322111  0110000   000 000 0 1112445688999988888888


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCC
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~  152 (285)
                      +...+.++|+.+.                .....+........|..+.- ++.  +..|+-.+  ..|...++..
T Consensus       222 ~r~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  222 NRSKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             cCCceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEec--CeEEEEEccC
Confidence            8889999999876                22111222222234777775 554  22333222  5677777665

These proteins are found in fungi.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.87  E-value=0.16  Score=45.78  Aligned_cols=146  Identities=12%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEE-----------EecCCCEEEE-ecCCcE
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-----------YSNTSELLIS-YNDELV   84 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~-----------~s~~~~~l~s-~~d~~i   84 (285)
                      -++..+-.++++++.+..+...                .++.+|...+..++           .||||..|+. +.||.+
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~~----------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRALR----------------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             ceeeeccCCCceeEeeechHHH----------------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            6777888899999877764421                11234555444443           5888888887 468888


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC--------CCcEEEEecC-CCeEEEEecCCCce
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--------NDEYVMSGSD-CGHLFIWKKKGGKL  155 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~l~~~~~-dg~v~vwd~~~~~~  155 (285)
                      +.|.+.-...           ....+++..+.|.....+..+ |...        .-.+++++++ ...+++|.....+|
T Consensus       260 ~f~Qiyi~g~-----------~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  260 GFYQIYITGK-----------IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             ceeeeeeecc-----------ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence            8777643211           111344444445422222222 2111        0124455444 56789998776666


Q ss_pred             EEEEecccccceEeEEcCCCC------------eEEEEecCCcEEEEcCC
Q 023246          156 VRLMVGDRHVVNQLEPHPHIP------------MFATCGIEKTVKLWAPM  193 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~------------~l~t~~~d~~i~iwd~~  193 (285)
                      +..+.  -..|..+. -+++.            .+++-+.+++|++|.-+
T Consensus       328 ll~~~--~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  328 LLDKL--IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             hhhhc--ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            52111  12233333 22222            24456678899999643

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=1.4  Score=36.94  Aligned_cols=105  Identities=11%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      .+++|.++.||+|+ ..+|+--.+++|.+.+....+....           ..+.-+..+..|....|+.... +|--.+
T Consensus        65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~-----------~~~~ck~k~~~IlGF~W~~s~e-~A~i~~  131 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE-----------YTQECKTKNANILGFCWTSSTE-IAFITD  131 (657)
T ss_pred             CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH-----------HHHHhccCcceeEEEEEecCee-EEEEec
Confidence            57899999999997 8999999999999999854331110           0000022344688899988744 333334


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  137 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  137 (285)
                      .-+-+|......               +.++..+.+...  |+-..| .++.+.++
T Consensus       132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~L  169 (657)
T KOG2377|consen  132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVIL  169 (657)
T ss_pred             CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEe
Confidence            446666654331               344444555544  666664 66666543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.76  E-value=2  Score=36.13  Aligned_cols=82  Identities=10%  Similarity=-0.102  Sum_probs=53.3

Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccC-----------------CCc-eEEEe
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR-----------------EDH-SRITL  223 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~  223 (285)
                      ...+.+++.+|++++.++...=|.|.++|+..+.+ +.+++....-..-.....                 ... +++-.
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            34578899999998888877778999999987764 445554333211100000                 011 33445


Q ss_pred             CCCCeEEEEEecccccceeEe
Q 023246          224 TPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       224 s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ..-|.|.||.++.+..+..+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEE
Confidence            667999999999987765543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.72  E-value=1.1  Score=32.60  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=24.9

Q ss_pred             ccceEeEEcCCCC------eEEEEecCCcEEEEcCCC
Q 023246          164 HVVNQLEPHPHIP------MFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       164 ~~v~~~~~~p~~~------~l~t~~~d~~i~iwd~~~  194 (285)
                      ..|..++|||.|-      .|+....++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            4789999999542      488888999999998754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.47  E-value=5.8  Score=33.39  Aligned_cols=98  Identities=10%  Similarity=0.114  Sum_probs=51.5

Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEE-ecCCCeEEEEec-CCCce---
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS-GSDCGHLFIWKK-KGGKL---  155 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~-~~~dg~v~vwd~-~~~~~---  155 (285)
                      .++++||..+.                +.++++.-.........+.| ++|+..+-++ +.-..+|..|-. +.++-   
T Consensus       222 ~~l~vWD~~~r----------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~  285 (461)
T PF05694_consen  222 HSLHVWDWSTR----------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE  285 (461)
T ss_dssp             -EEEEEETTTT----------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred             CeEEEEECCCC----------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence            45999999887                67777775543333556665 3555554333 334556665543 43431   


Q ss_pred             -EEEEecc-----------------cccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCC
Q 023246          156 -VRLMVGD-----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT  195 (285)
Q Consensus       156 -~~~~~~h-----------------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~  195 (285)
                       +-.+..-                 ..-|+.+.+|.|.++|..++ .+|.|+.||+...
T Consensus       286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence             2222110                 23478999999999966655 7999999998654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.03  E-value=9.1  Score=34.61  Aligned_cols=127  Identities=9%  Similarity=-0.022  Sum_probs=70.1

Q ss_pred             cceEEEEEecCC--CEEEE-ecCCcEEEEEcCCCCCCCCCC---CCC-ccccCCCCceEeecccCceeeeeEEEec--CC
Q 023246           62 IHITGLAYSNTS--ELLIS-YNDELVYLFEKNMGLGPSPLS---LSP-EDLQKREEPQVYSGHRNSQTVKGVNFFG--PN  132 (285)
Q Consensus        62 ~~v~~i~~s~~~--~~l~s-~~d~~i~iwd~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  132 (285)
                      ..|+-|....-|  +.|+. ..||.|.+|.+..-.......   ... ......++...+...   ....++++ .  ..
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~---~SaWGLdI-h~~~~  176 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG---ASAWGLDI-HDYKK  176 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC---CceeEEEE-EecCc
Confidence            346666555544  34544 579999999874221000000   000 000011122222222   23888887 5  56


Q ss_pred             CcEEEEecCCCeEEEEecCC--CceE-EEEecccccceEeEEcCCC-----C-eEEEEecCCcEEEEcC
Q 023246          133 DEYVMSGSDCGHLFIWKKKG--GKLV-RLMVGDRHVVNQLEPHPHI-----P-MFATCGIEKTVKLWAP  192 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~--~~~~-~~~~~h~~~v~~~~~~p~~-----~-~l~t~~~d~~i~iwd~  192 (285)
                      .++||+++....|.||-...  .+.. ..-..|..-|.+|+|-++.     . +++.++-.|.+.+|++
T Consensus       177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            77888888888888876432  1111 1111255678899987643     2 6888889999888776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.75  E-value=2.9  Score=39.26  Aligned_cols=109  Identities=5%  Similarity=-0.106  Sum_probs=63.3

Q ss_pred             eeeEEEecCCCcEEEE--ecCCCeEEEEecCCCceE-----EEEe------cccccceEeEEcCCCCe-EEEEecCCcEE
Q 023246          123 VKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLV-----RLMV------GDRHVVNQLEPHPHIPM-FATCGIEKTVK  188 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~--~~~dg~v~vwd~~~~~~~-----~~~~------~h~~~v~~~~~~p~~~~-l~t~~~d~~i~  188 (285)
                      +..+.+ .+++...++  .+.+-.|..||+++-...     .-+.      .....+.++.|.|.-.. .+.+..|+.|+
T Consensus       103 i~~~v~-~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  103 IVIFVC-FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             ceEEEe-ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            444443 456555433  344558999998753211     1111      12234567889987655 67777899999


Q ss_pred             EEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          189 LWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       189 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +..+....  +..++ ......++. |.+.+..++.|-..|++.-|..
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~-WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVL-WSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEE-eccccceeeEecCCCeEEEeec
Confidence            88775443  22322 222233333 4556667788888888877753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.70  E-value=9.7  Score=34.27  Aligned_cols=33  Identities=9%  Similarity=0.014  Sum_probs=26.4

Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      .+.+..+..||+.++|+-=..+|.|.+-+....
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            356778899999999888888898888776544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.68  E-value=7.3  Score=32.83  Aligned_cols=205  Identities=10%  Similarity=0.088  Sum_probs=87.8

Q ss_pred             cEEEEe-eCCCcEEEEEccCCcccCCcCCCCCcccccccccCC-CCCcceEEEEEecCCCEEEEe--c-C----CcEEEE
Q 023246           17 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY--N-D----ELVYLF   87 (285)
Q Consensus        17 ~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~--~-d----~~i~iw   87 (285)
                      ++|+.. -..+.|.|.|+.+......     ..+......+.. .--.....+.--|+|++++++  + +    |-+.++
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~-----l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPR-----LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-E-----EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCc-----eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            455554 4788999999985432111     011111111100 000112223334788877763  2 2    457788


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeecccC-ceeeeeEEEecCCCcEEEEecC--------------------CCeEE
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSD--------------------CGHLF  146 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~--------------------dg~v~  146 (285)
                      |-.+.                +.......... ...-+.+-| .|..+.++|..-                    ...+.
T Consensus       163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~  225 (461)
T PF05694_consen  163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH  225 (461)
T ss_dssp             -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred             cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence            87654                34444433222 112344543 777777777542                    45899


Q ss_pred             EEecCCCceEEEEeccc--ccceEeEE--cCCCCe-EEEEecCCcEEEEcC-CCCC-----CCCCCCC------------
Q 023246          147 IWKKKGGKLVRLMVGDR--HVVNQLEP--HPHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------  203 (285)
Q Consensus       147 vwd~~~~~~~~~~~~h~--~~v~~~~~--~p~~~~-l~t~~~d~~i~iwd~-~~~~-----~~~~~~~------------  203 (285)
                      +||+.+.+.+.++.--.  ..+..+.|  .|+..+ ++.+....+|..|-. +.+.     +.++...            
T Consensus       226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~  305 (461)
T PF05694_consen  226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK  305 (461)
T ss_dssp             EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred             EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence            99999999998886322  23445555  566666 666666666655543 2221     1111110            


Q ss_pred             ----cccceeeccccCCCc-eEEEeCCCCeEEEEEecccccceeE
Q 023246          204 ----AEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       204 ----~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                          ..+++.....+.+++ +.++.--.|.++.||+.....+...
T Consensus       306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence                012222222344455 4456667899999999987655443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=91.35  E-value=4.5  Score=35.05  Aligned_cols=64  Identities=13%  Similarity=0.138  Sum_probs=34.1

Q ss_pred             CCcEEEEecCC--CeEEEEecCCCceE--EEEecccccceEeEEcCCCCeEEEEecCC---cEEEEcCCCCCC
Q 023246          132 NDEYVMSGSDC--GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDF  197 (285)
Q Consensus       132 ~~~~l~~~~~d--g~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~  197 (285)
                      ++...+.|+.+  ..+..||..+.+-.  ..+.........++  -+++..+.||.++   .+..||+++...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            56677777753  35777886654322  12221111112222  2566677777543   467888876653

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.28  E-value=7.1  Score=31.87  Aligned_cols=157  Identities=16%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCc------EEEEEccCCc-ccCCcCCCCCcccccccccCCC-------CCcceEEEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY   69 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~------v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~i~~   69 (285)
                      +.+.++.+.|++ ..+++-+.+|.      +..+++.... ....      +.......+...       -.-..-+|++
T Consensus        20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~G~~~~~~~~D~Egi~~   92 (326)
T PF13449_consen   20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGG------VTILDMIPLRDPDGQPFPKNGLDPEGIAV   92 (326)
T ss_pred             CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccc------eEeccceeccCCCCCcCCcCCCChhHeEE
Confidence            567889999754 56666677777      5555554311 0000      000000001010       1114457888


Q ss_pred             ecCCCEEEEec-C------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-------ecccCceeeeeEEEecCCCcE
Q 023246           70 SNTSELLISYN-D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-------SGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        70 s~~~~~l~s~~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      .++|.++++.. +      ..|..++.....   ...+        .....+       ........+.++++ +++++.
T Consensus        93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~---~~~~--------~vP~~~~~~~~~~~~~~~N~G~E~la~-~~dG~~  160 (326)
T PF13449_consen   93 PPDGSFWISSEGGRTGGIPPRIRRFDLDGRV---IRRF--------PVPAAFLPDANGTSGRRNNRGFEGLAV-SPDGRT  160 (326)
T ss_pred             ecCCCEEEEeCCccCCCCCCEEEEECCCCcc---cceE--------ccccccccccCccccccCCCCeEEEEE-CCCCCE
Confidence            88888888875 6      778888866220   0000        000111       12222234889997 999996


Q ss_pred             EEEecC-----CC-----------eEEEEecCC-CceEEE----Eec-----ccccceEeEEcCCCCeEE
Q 023246          136 VMSGSD-----CG-----------HLFIWKKKG-GKLVRL----MVG-----DRHVVNQLEPHPHIPMFA  179 (285)
Q Consensus       136 l~~~~~-----dg-----------~v~vwd~~~-~~~~~~----~~~-----h~~~v~~~~~~p~~~~l~  179 (285)
                      |+++.+     |+           .|..||..+ ++....    +..     ....|..+.+-+++++|+
T Consensus       161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv  230 (326)
T PF13449_consen  161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV  230 (326)
T ss_pred             EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence            665543     22           233445544 323222    221     345688888888888654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.03  E-value=1.3  Score=23.10  Aligned_cols=40  Identities=8%  Similarity=0.046  Sum_probs=26.8

Q ss_pred             CCCcEEEE-ecCCCeEEEEecCCCceEEEEecccccceEeEE
Q 023246          131 PNDEYVMS-GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP  171 (285)
Q Consensus       131 ~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~  171 (285)
                      |+++++++ ...++.|.++|..+++.+..+.. ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            45565544 44688999999998888887765 233444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.83  E-value=6.7  Score=36.08  Aligned_cols=64  Identities=11%  Similarity=0.101  Sum_probs=41.4

Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecccccce-------------EeEEcC--CCCeEEEEec----------CCcE
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-------------QLEPHP--HIPMFATCGI----------EKTV  187 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~p--~~~~l~t~~~----------d~~i  187 (285)
                      +..++.++.|+.|.-.|.++|+.+..+.. .+.|.             .+.-.|  .+..++.++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            45788888999999999999999877642 11110             111112  1335555532          5789


Q ss_pred             EEEcCCCCCC
Q 023246          188 KLWAPMPTDF  197 (285)
Q Consensus       188 ~iwd~~~~~~  197 (285)
                      +-+|.+++++
T Consensus       339 ~A~Da~TGkl  348 (764)
T TIGR03074       339 RAFDVNTGAL  348 (764)
T ss_pred             EEEECCCCcE
Confidence            9999987763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.51  E-value=13  Score=33.65  Aligned_cols=162  Identities=10%  Similarity=0.073  Sum_probs=87.9

Q ss_pred             CCEEEEecCCcEEEEEcCCCCCCCCC----CCCCccccCCCCceEeecccCceeeeeEEEec-CCCcEEEEecCCCeEEE
Q 023246           73 SELLISYNDELVYLFEKNMGLGPSPL----SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-PNDEYVMSGSDCGHLFI  147 (285)
Q Consensus        73 ~~~l~s~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~v~v  147 (285)
                      ..+++.+..+.|.||+..........    .+.............+.....+..|+.+..-. -....|+.+.+||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            66778888999999998654321100    00000000000000111001222255554311 24567888999999999


Q ss_pred             EecCC-------C-------------ceEEEEecccccceEeEEc--CCCCeEEEEecCCcEEEEcCCC--CCC---CC-
Q 023246          148 WKKKG-------G-------------KLVRLMVGDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMP--TDF---PP-  199 (285)
Q Consensus       148 wd~~~-------~-------------~~~~~~~~h~~~v~~~~~~--p~~~~l~t~~~d~~i~iwd~~~--~~~---~~-  199 (285)
                      |.+++       .             ++...+. -...+++++++  ...+++|.++....|.+|-...  .+.   .. 
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            97531       1             0122222 23478899998  7777888888888888876533  221   11 


Q ss_pred             CCCCcccceeeccccCCCc---eEEEeCCCCeEEEEEec
Q 023246          200 LPDNAEKIMKANKQGREDH---SRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~---~~~~~s~d~~i~vwd~~  235 (285)
                      ...|.-+-++......+..   .+++.+-.|.+.+|++.
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            1123333333333332222   67788889999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.42  E-value=9.9  Score=32.11  Aligned_cols=204  Identities=9%  Similarity=0.080  Sum_probs=93.6

Q ss_pred             EEEEcCCCCcEEEEeeCC----------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCC-c-ceEEEEEecCCCE
Q 023246            8 AIVIDPRNPNYFAVGGSD----------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-I-HITGLAYSNTSEL   75 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~i~~s~~~~~   75 (285)
                      .+.|.+++..++++...+          ..|..|.+.+....             ...++.... . ....+..++++++
T Consensus       174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-------------d~lvfe~~~~~~~~~~~~~s~d~~~  240 (414)
T PF02897_consen  174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-------------DELVFEEPDEPFWFVSVSRSKDGRY  240 (414)
T ss_dssp             EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--------------EEEEC-TTCTTSEEEEEE-TTSSE
T ss_pred             eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh-------------CeeEEeecCCCcEEEEEEecCcccE
Confidence            389999864445554333          22666676655311             011112212 2 2567889999997


Q ss_pred             EEE-e-c--C-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe---cCCCeEEE
Q 023246           76 LIS-Y-N--D-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG---SDCGHLFI  147 (285)
Q Consensus        76 l~s-~-~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~dg~v~v  147 (285)
                      |+. . +  + ..+++.++....            ........+...... ....+.. . .+.+++..   ...+.|..
T Consensus       241 l~i~~~~~~~~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~-~~~~v~~-~-~~~~yi~Tn~~a~~~~l~~  305 (414)
T PF02897_consen  241 LFISSSSGTSESEVYLLDLDDGG------------SPDAKPKLLSPREDG-VEYYVDH-H-GDRLYILTNDDAPNGRLVA  305 (414)
T ss_dssp             EEEEEESSSSEEEEEEEECCCTT------------TSS-SEEEEEESSSS--EEEEEE-E-TTEEEEEE-TT-TT-EEEE
T ss_pred             EEEEEEccccCCeEEEEeccccC------------CCcCCcEEEeCCCCc-eEEEEEc-c-CCEEEEeeCCCCCCcEEEE
Confidence            664 2 2  4 567888886530            000233333333322 1333432 2 44444433   23567888


Q ss_pred             EecCCCce---EEEEecccccceEeEEcCCCCeEE-EEecCC--cEEEEcCC-CCCCCCCCCC-cccceeeccccCCCce
Q 023246          148 WKKKGGKL---VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEK--TVKLWAPM-PTDFPPLPDN-AEKIMKANKQGREDHS  219 (285)
Q Consensus       148 wd~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~-t~~~d~--~i~iwd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~  219 (285)
                      .++.....   ...+..|...+.-..+...+.+|+ .--.++  .|+++++. +.....+... ...+.........+.+
T Consensus       306 ~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~  385 (414)
T PF02897_consen  306 VDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL  385 (414)
T ss_dssp             EETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred             ecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence            88876652   334555555333333334455544 444444  68889988 4433222111 1112222222223334


Q ss_pred             EEEeCC---CCeEEEEEeccccc
Q 023246          220 RITLTP---DVIMHVLRLQRRQT  239 (285)
Q Consensus       220 ~~~~s~---d~~i~vwd~~~~~~  239 (285)
                      ++..+.   -++++.+|+.+++.
T Consensus       386 ~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  386 RFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEeCCCCCCEEEEEECCCCCE
Confidence            433333   26666677666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.38  E-value=6.2  Score=29.71  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      ..|+.+...+.|.+|++...+.              .......--+.|..+.++..|++|++-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~--------------~~~~~F~Tv~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEEC--------------PLLCTFSTVGRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCC--------------ceeEEEcchhheeEEEeccccceEEEE
Confidence            3444446667899999984431              111112224689999999999999995

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.05  E-value=6.7  Score=29.56  Aligned_cols=103  Identities=10%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             CCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---CC---eEE
Q 023246           73 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CG---HLF  146 (285)
Q Consensus        73 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg---~v~  146 (285)
                      +.+|++.....|.+|++....              .+...+|..- +.  |..+.+ +..|.|++|--.   ..   .++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv-~~--V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR   90 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV-GR--VLQLVY-SEAGDYLVTLEEKNKRSPVDFVR   90 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC--------------CceeEEEcch-hh--eeEEEe-ccccceEEEEEeecCCccceEEE
Confidence            345555678889999998331              1445555543 23  889997 999999998533   22   556


Q ss_pred             EE---ecC--CCceEE-EEecc---------------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          147 IW---KKK--GGKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       147 vw---d~~--~~~~~~-~~~~h---------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      +|   ...  ..+++. .+.+|                     ..++.+++.+|..--|+.|+ ++.+.+|.+..
T Consensus        91 ~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen   91 AYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence            54   221  122222 22222                     33677888888544455555 46788998753

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.94  E-value=15  Score=33.56  Aligned_cols=89  Identities=15%  Similarity=0.136  Sum_probs=52.4

Q ss_pred             cceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe------ecccCceeeeeEEEecCC---
Q 023246           62 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY------SGHRNSQTVKGVNFFGPN---  132 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~---  132 (285)
                      -.|..|.++|+|++++..+...|.|..+...-+.. ..+...  +..-..+++      ........|..+.| +|.   
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~-~~~~~g--~~~i~Crt~~v~~~~~~~~~~~~i~qv~W-hP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKN-GEFEDG--KKEINCRTVPVDERFFTSNSSLEIKQVRW-HPWSES  160 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcc-ccccCC--CcceeEEEEEechhhccCCCCceEEEEEE-cCCCCC
Confidence            46889999999999888665666666664321100 000000  000011111      11111234888996 665   


Q ss_pred             CcEEEEecCCCeEEEEecCCCc
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      +..|+.-..|+++++||+...+
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            5889888999999999987543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.93  E-value=7.4  Score=33.99  Aligned_cols=114  Identities=11%  Similarity=0.088  Sum_probs=66.9

Q ss_pred             eeeEEEecCC----CcEEEEecCCCeEEEEecC-----CCceEEEEeccc-c----cceEeEEcCCCCeEEEEecCCcEE
Q 023246          123 VKGVNFFGPN----DEYVMSGSDCGHLFIWKKK-----GGKLVRLMVGDR-H----VVNQLEPHPHIPMFATCGIEKTVK  188 (285)
Q Consensus       123 i~~~~~~~~~----~~~l~~~~~dg~v~vwd~~-----~~~~~~~~~~h~-~----~v~~~~~~p~~~~l~t~~~d~~i~  188 (285)
                      |.++.| .|-    ..-+++.-....|.||.+.     .++.+..-..+- .    -...+.|+|....|+.-..+..=-
T Consensus        59 V~GlsW-~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV  137 (671)
T PF15390_consen   59 VHGLSW-APPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV  137 (671)
T ss_pred             eeeeee-cCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence            888885 664    3356666778899999875     233332221111 1    124567999988866555444434


Q ss_pred             EEcCCCC--CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          189 LWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       189 iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +++.+..  .+..-....+.+.+..|...+.+++++.+..=.-++||-..+
T Consensus       138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            5555433  222212344556666665656677777777777889985443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.92  E-value=8  Score=30.27  Aligned_cols=114  Identities=11%  Similarity=0.021  Sum_probs=71.3

Q ss_pred             CcceEEEEEecCCCEEEE-ec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE
Q 023246           61 NIHITGLAYSNTSELLIS-YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM  137 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s-~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  137 (285)
                      ..-...+.|..+|.++-+ |.  ...|+.+|+.++                +......-... ..--.++.+  +++...
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg----------------~~~~~~~l~~~-~FgEGit~~--~d~l~q  104 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG----------------KVLQSVPLPPR-YFGEGITIL--GDKLYQ  104 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS----------------SEEEEEE-TTT---EEEEEEE--TTEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCC----------------cEEEEEECCcc-ccceeEEEE--CCEEEE
Confidence            344678889888887777 54  457999999887                44433332221 123345542  345555


Q ss_pred             EecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          138 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       138 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      -.=.++...+||..+.+.+.++.- .+.=..++  .+++.|+.......++++|+.+.+
T Consensus       105 LTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             EEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence            566789999999999999888864 34556666  356666666656789999987654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.44  E-value=13  Score=32.84  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=25.2

Q ss_pred             CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246          132 NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      +..++++.+.|+.+++||+.+++++.+.
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            6789999999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.19  E-value=11  Score=30.84  Aligned_cols=108  Identities=12%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee--cccCceeeeeEEEecCC----CcEE
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPN----DEYV  136 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~----~~~l  136 (285)
                      ..+.|+|.|+|++|++-..|.|++++.....              ...+..+.  ..........+++ +|+    +.+.
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~--------------~~~v~~~~~v~~~~~~gllgia~-~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSL--------------KTPVADLPEVFADGERGLLGIAF-HPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTTEE--------------CEEEEE-TTTBTSTTBSEEEEEE--TTCCCC-EEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCCcC--------------cceecccccccccccCCccccee-ccccCCCCEEE
Confidence            4678999999999998789999999933220              00111110  0111123788997 773    3333


Q ss_pred             EEecCC--------CeEEEEecCCC-------ceE-EEEec---ccccceEeEEcCCCCeEEEEecCC
Q 023246          137 MSGSDC--------GHLFIWKKKGG-------KLV-RLMVG---DRHVVNQLEPHPHIPMFATCGIEK  185 (285)
Q Consensus       137 ~~~~~d--------g~v~vwd~~~~-------~~~-~~~~~---h~~~v~~~~~~p~~~~l~t~~~d~  185 (285)
                      ++-+..        ..|.-|.+..+       +.+ ..+..   ....-..|+|.|++.+.++.+..+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            333321        24544554433       111 12222   223456699999998766666444

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.14  E-value=12  Score=31.14  Aligned_cols=149  Identities=13%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             EEcCCCCcEEEEeeCCCcEEE--EEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEE
Q 023246           10 VIDPRNPNYFAVGGSDEYARV--YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYL   86 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~i   86 (285)
                      +|.++|..+|+++..||.-.+  .|+.+++..               ++..+-........++|+.+.++- -.+..|.-
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---------------QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~  106 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---------------QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR  106 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---------------E---SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEE---------------ECccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence            467777667777777776555  466666521               111111112224566787776544 45678888


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEEecC----------------------CC
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD----------------------CG  143 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~----------------------dg  143 (285)
                      .|+.+.                +....+.....-  +....+ .+.++..++..-.                      ..
T Consensus       107 vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~  168 (386)
T PF14583_consen  107 VDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC  168 (386)
T ss_dssp             EETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred             EECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence            888876                343444433332  221222 1445655543211                      23


Q ss_pred             eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCC-----cEEEEcC
Q 023246          144 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAP  192 (285)
Q Consensus       144 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~  192 (285)
                      .|...|+.+|+....+. ....+..+.|+|....++.=|..|     .-|||-+
T Consensus       169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i  221 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI  221 (386)
T ss_dssp             EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred             eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence            56777888887655554 345778899999877755555443     2366655

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.71  E-value=2.3  Score=37.49  Aligned_cols=67  Identities=13%  Similarity=0.210  Sum_probs=40.6

Q ss_pred             CCCcEEEEecCCCeEEEEecCC----CceEEEE-ec-c--------------------cccceEeEEcC----CCCeEEE
Q 023246          131 PNDEYVMSGSDCGHLFIWKKKG----GKLVRLM-VG-D--------------------RHVVNQLEPHP----HIPMFAT  180 (285)
Q Consensus       131 ~~~~~l~~~~~dg~v~vwd~~~----~~~~~~~-~~-h--------------------~~~v~~~~~~p----~~~~l~t  180 (285)
                      ++...++.+..||.+.......    +...... .. +                    ...+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666777778888888887654    2222211 11 1                    12345566666    6778999


Q ss_pred             EecCCcEEEEcCCCCCC
Q 023246          181 CGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       181 ~~~d~~i~iwd~~~~~~  197 (285)
                      .+.|+++|+||+.++.+
T Consensus       236 l~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EETTSEEEEEETTTTCE
T ss_pred             EeCCCeEEEEECCCCeE
Confidence            99999999999988765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.52  E-value=13  Score=30.89  Aligned_cols=103  Identities=18%  Similarity=0.316  Sum_probs=54.9

Q ss_pred             ceEEEEEecCCCEEEEec------------CC-cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe
Q 023246           63 HITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF  129 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  129 (285)
                      ....|+|.++|+++++..            .+ .|.+++-..+.+            .......|...-..  ...+++ 
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG------------~~d~~~vfa~~l~~--p~Gi~~-   79 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG------------KYDKSNVFAEELSM--VTGLAV-   79 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC------------CcceeEEeecCCCC--ccceeE-
Confidence            466899999999887742            22 676665433210            00122333322222  577886 


Q ss_pred             cCCCcEEEEecCCCeEEEEecCC-----Cc--eE-EEEec----ccccceEeEEcCCCCeEEEEe
Q 023246          130 GPNDEYVMSGSDCGHLFIWKKKG-----GK--LV-RLMVG----DRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       130 ~~~~~~l~~~~~dg~v~vwd~~~-----~~--~~-~~~~~----h~~~v~~~~~~p~~~~l~t~~  182 (285)
                      .+++ .++ +......++.|...     ++  .+ ..+..    +......++|.|+|.+.++.+
T Consensus        80 ~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        80 AVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             ecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            6777 444 34443333435431     12  12 22222    234577899999998755544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.41  E-value=17  Score=32.01  Aligned_cols=201  Identities=13%  Similarity=0.072  Sum_probs=101.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..++.++.++.|.-.|..+++.+.......+..... .   ......-..+++. +++.++...++.|.-.|..++    
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~-~---~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG----  140 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIP-V---MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG----  140 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCccccc-c---cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence            467777888999999999998654433221100000 0   0000000112222 344555556899999999887    


Q ss_pred             CCCCCCccccCCCCceEeecc--cCceeeee-EEEecCCCcEEEEec------CCCeEEEEecCCCceEEEEecccc---
Q 023246           97 PLSLSPEDLQKREEPQVYSGH--RNSQTVKG-VNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLMVGDRH---  164 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~~~~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~~h~~---  164 (285)
                                  +.+-.+...  .....+.+ -..  .++. ++.+.      .+|.|..+|.++|+.+..+..-..   
T Consensus       141 ------------k~~W~~~~~~~~~~~~~tssP~v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~  205 (527)
T TIGR03075       141 ------------KVVWSKKNGDYKAGYTITAAPLV--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMG  205 (527)
T ss_pred             ------------CEEeecccccccccccccCCcEE--ECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcc
Confidence                        333332211  10000111 111  1343 44432      268999999999998876542110   


Q ss_pred             ----------------------------cc-eEeEEcCCCCeEEEEec-----CC-----------cEEEEcCCCCCC--
Q 023246          165 ----------------------------VV-NQLEPHPHIPMFATCGI-----EK-----------TVKLWAPMPTDF--  197 (285)
Q Consensus       165 ----------------------------~v-~~~~~~p~~~~l~t~~~-----d~-----------~i~iwd~~~~~~--  197 (285)
                                                  .+ ..+++.|...++..+..     ++           .|.-.|++++++  
T Consensus       206 ~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W  285 (527)
T TIGR03075       206 YLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW  285 (527)
T ss_pred             cccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Confidence                                        11 12356665555444331     12           455667777764  


Q ss_pred             -CCCCCCc--------cccee-eccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          198 -PPLPDNA--------EKIMK-ANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       198 -~~~~~~~--------~~~~~-~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                       .+...|.        .+++. ..........++.+.++|.++++|..+++.+.
T Consensus       286 ~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       286 HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence             1221121        11111 10011112367789999999999988886653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=9.6  Score=32.88  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEe---------cCCCceEE---EEe--------cccccceEeEEcCCC---CeEE
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV--------GDRHVVNQLEPHPHI---PMFA  179 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd---------~~~~~~~~---~~~--------~h~~~v~~~~~~p~~---~~l~  179 (285)
                      |..+.. ++.|..++-.+.+|.+.++=         .++|+..-   ++.        ...-.+..++|+|+.   ..|+
T Consensus       106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            666775 89999998888888765542         22343221   111        111246678999976   5577


Q ss_pred             EEecCCcEEEEcCCCC
Q 023246          180 TCGIEKTVKLWAPMPT  195 (285)
Q Consensus       180 t~~~d~~i~iwd~~~~  195 (285)
                      .-..|.+||+|++...
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            7788999999998643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.73  E-value=23  Score=32.77  Aligned_cols=28  Identities=14%  Similarity=0.062  Sum_probs=23.1

Q ss_pred             eEEEeCCCCeEEEEEecccccceeEeee
Q 023246          219 SRITLTPDVIMHVLRLQRRQTLAYRERR  246 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~~~~~~~~~  246 (285)
                      .++.++++|.++++|.++++.+...+..
T Consensus       461 ~v~~~~K~G~~~vlDr~tG~~l~~~~e~  488 (764)
T TIGR03074       461 ALVAPTKQGQIYVLDRRTGEPIVPVEEV  488 (764)
T ss_pred             EEEEECCCCEEEEEECCCCCEEeeceee
Confidence            7888999999999999998877665443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00564 PQQ beta-propeller repeat

Probab=87.61  E-value=2  Score=21.05  Aligned_cols=25  Identities=28%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             EEEEecCCCeEEEEecCCCceEEEE
Q 023246          135 YVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .++.++.+|.++.+|.++|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999887653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.37  E-value=24  Score=32.65  Aligned_cols=126  Identities=12%  Similarity=0.050  Sum_probs=72.6

Q ss_pred             cceEEEEEec----CC---CEEEEec-----CCcEEEEEcCCCCCCCCCCCCC--------ccccCCCCceEeecccCce
Q 023246           62 IHITGLAYSN----TS---ELLISYN-----DELVYLFEKNMGLGPSPLSLSP--------EDLQKREEPQVYSGHRNSQ  121 (285)
Q Consensus        62 ~~v~~i~~s~----~~---~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  121 (285)
                      ..++.+.|-+    ..   ..+++.+     ...|.-|.+.....+....+..        ...++...++....-....
T Consensus       181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~  260 (753)
T PF11635_consen  181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK  260 (753)
T ss_pred             ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence            3667777765    22   2555532     3469999987653111111100        1111111222222222223


Q ss_pred             eeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE----e---------------cccccceEeEEcCCCCeEEEEe
Q 023246          122 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V---------------GDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       122 ~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~---------------~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                      .|.++.. ..-+.+++....||+|.++|..+-+.+...    .               ..-..+..++|||++-.++.-.
T Consensus       261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            4778875 667778999999999999997765444322    0               0112344588999999899888


Q ss_pred             cCCcEE
Q 023246          183 IEKTVK  188 (285)
Q Consensus       183 ~d~~i~  188 (285)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            898855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.72  E-value=6.3  Score=28.73  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             cceEEEEEecCCC------EEEE-ecCCcEEEEEcCC
Q 023246           62 IHITGLAYSNTSE------LLIS-YNDELVYLFEKNM   91 (285)
Q Consensus        62 ~~v~~i~~s~~~~------~l~s-~~d~~i~iwd~~~   91 (285)
                      ..+..++|||.|-      +|++ .+++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3789999999652      6776 4699999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=86.53  E-value=2.2  Score=20.19  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYD   32 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd   32 (285)
                      ..|.+++..+   .+++.+.+-+.+|+|.
T Consensus         2 E~i~aia~g~---~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGD---SWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence            3577888877   5888899999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.43  E-value=14  Score=29.08  Aligned_cols=154  Identities=12%  Similarity=0.133  Sum_probs=92.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeC---------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS   73 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~   73 (285)
                      ....+...|.+.+ ++-+|+..         .+.|++|+...+                         ...+.|+..|+|
T Consensus       147 ~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------------------------~gpyGi~atpdG  200 (353)
T COG4257         147 DANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQG-------------------------GGPYGICATPDG  200 (353)
T ss_pred             CCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccCCC-------------------------CCCcceEECCCC
Confidence            3456677888875 77777753         234555554422                         245678899999


Q ss_pred             CEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC-ceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           74 ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        74 ~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                      ..-.+ -.+..|-..|...+                 ....+..... ......+- .++.++.-++....+.+..+|-.
T Consensus       201 svwyaslagnaiaridp~~~-----------------~aev~p~P~~~~~gsRriw-sdpig~~wittwg~g~l~rfdPs  262 (353)
T COG4257         201 SVWYASLAGNAIARIDPFAG-----------------HAEVVPQPNALKAGSRRIW-SDPIGRAWITTWGTGSLHRFDPS  262 (353)
T ss_pred             cEEEEeccccceEEcccccC-----------------CcceecCCCcccccccccc-cCccCcEEEeccCCceeeEeCcc
Confidence            86555 45777777776654                 2223322221 01133333 26778888887778888888876


Q ss_pred             CCce-EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC
Q 023246          152 GGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  200 (285)
Q Consensus       152 ~~~~-~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  200 (285)
                      ...- ...+.+-+..-.++.....++.-++--..+.|.-+|.++..+..+
T Consensus       263 ~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~  312 (353)
T COG4257         263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL  312 (353)
T ss_pred             cccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEe
Confidence            5442 234444455566676666666555444456777777776655443

>PRK13684 Ycf48-like protein; Provisional

Probab=86.33  E-value=17  Score=29.81  Aligned_cols=114  Identities=11%  Similarity=-0.016  Sum_probs=62.5

Q ss_pred             CcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246           61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                      ...+..+.+.|++.+++.+..|.+..-.-..+                +........ ....++++.+ .++++.++.+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg~  233 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLAR  233 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCC----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEec
Confidence            34577888888887887787776653211111                112222211 1234888887 78888776654


Q ss_pred             CCCeEEEEecCCCceEEEEec----ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          141 DCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       141 ~dg~v~vwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                       .|.+++=..+.+..-.....    ....+.++.+.|++..++ ++.+|.+.. ....+
T Consensus       234 -~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G  289 (334)
T PRK13684        234 -GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG  289 (334)
T ss_pred             -CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC
Confidence             57665323344433222111    123578889998776554 455776543 34433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.20  E-value=19  Score=30.33  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             CcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCC--CceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           61 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      ...++.+.|.+++.+++.+..|.+..= ...+.             .+.  .............+.++.| .+++..+++
T Consensus       280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~-------------~~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a~  344 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGL-------------TEEDFDFEEADIKSRGFGILDVGY-RSKKEAWAA  344 (398)
T ss_pred             ccceeeeeEcCCCCEEEEeCCceEEEe-cCCCC-------------cccccceeecccCCCCcceEEEEE-cCCCcEEEE
Confidence            456889999999999988887776543 22220             000  1111111111123788887 666665554


Q ss_pred             ecCCCeEEEEecCCCceEEEEe---cccccceEeEEcCCCCeEEEEecCCcEEEE
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW  190 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~t~~~d~~i~iw  190 (285)
                       +..|.+.... ..|+.-....   .-....+.+.|.++++.+++| .+|.|.-|
T Consensus       345 -G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        345 -GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             -ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence             4567666553 3344422222   223567889988776666655 47776544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.10  E-value=3.2  Score=21.30  Aligned_cols=27  Identities=7%  Similarity=0.121  Sum_probs=18.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC--CcEEEE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD--EYARVY   31 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d--g~v~iw   31 (285)
                      .-....|+|||..++.++..+  |.-.||
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345688999986667777777  777666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.89  E-value=14  Score=30.79  Aligned_cols=103  Identities=12%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             CCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcC----CCCe--EEEEec-C---CcEEEEcCCC--CCCC
Q 023246          131 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP----HIPM--FATCGI-E---KTVKLWAPMP--TDFP  198 (285)
Q Consensus       131 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p----~~~~--l~t~~~-d---~~i~iwd~~~--~~~~  198 (285)
                      |...+++.....+-+.+||+. |+.+..+.  .+.++.+..-.    .++.  |+.++. +   .+|++|.+..  +.+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            455678888889999999998 77777765  23444444321    2333  555542 2   4699997643  3332


Q ss_pred             CCCC-------Ccccceeec--cccCC-CceEEEeCCCCeEEEEEecc
Q 023246          199 PLPD-------NAEKIMKAN--KQGRE-DHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       199 ~~~~-------~~~~~~~~~--~~~~~-~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .+..       ....++-+.  ..... .-+.+....+|.+..|.+..
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~  190 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTD  190 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEe
Confidence            2211       111122221  11122 23666677889999998863

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.74  E-value=9.5  Score=26.37  Aligned_cols=124  Identities=12%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-----CCCEEEEecC
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYND   81 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~s~~d   81 (285)
                      ..-.|.... ..|++++.-|+|.|++.......... ...++..       -.-...|++++--+     +...|+.|+.
T Consensus         2 aiGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~-------LNin~~italaaG~l~~~~~~D~LliGt~   72 (136)
T PF14781_consen    2 AIGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGR-QDSDISF-------LNINQEITALAAGRLKPDDGRDCLLIGTQ   72 (136)
T ss_pred             eEEEeCCCc-eeEEEEecCCEEEEECCCcccccccc-ccCceeE-------EECCCceEEEEEEecCCCCCcCEEEEecc
Confidence            445677765 58888899999999998754321110 1111111       12244677776544     2348888999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe--cC-CCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GP-NDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      ..+..||+...                .. ..++.-.+.  +.++.+-  .. ....++.| ....|.-||.+..+...+
T Consensus        73 t~llaYDV~~N----------------~d-~Fyke~~DG--vn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   73 TSLLAYDVENN----------------SD-LFYKEVPDG--VNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             ceEEEEEcccC----------------ch-hhhhhCccc--eeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence            99999999876                11 122222233  6666541  22 23444444 467788888775555544


Q ss_pred             E
Q 023246          159 M  159 (285)
Q Consensus       159 ~  159 (285)
                      .
T Consensus       133 V  133 (136)
T PF14781_consen  133 V  133 (136)
T ss_pred             e
Confidence            3

>PF01011 PQQ: PQQ enzyme repeat family

Probab=85.38  E-value=3.6  Score=21.15  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             EEEEecCCCeEEEEecCCCceEEEEec
Q 023246          135 YVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .++.++.+|.|+-.|.++|+.+..+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355669999999999999999988764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.72  E-value=20  Score=28.52  Aligned_cols=53  Identities=19%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec---C----CcEEEEEcCCC
Q 023246           25 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---D----ELVYLFEKNMG   92 (285)
Q Consensus        25 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---d----~~i~iwd~~~~   92 (285)
                      -..|.+||..+.+....               ..+-.+.|+.+.|..+.+++++|.   +    ..+..||..+.
T Consensus        15 C~~lC~yd~~~~qW~~~---------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~   74 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSP---------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ   74 (281)
T ss_pred             CCEEEEEECCCCEeecC---------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence            35689999987764211               133567899999998778888763   2    35788888765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.65  E-value=25  Score=29.38  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             CcceEEEEEecCCCEEEE-ec----CC-cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           61 NIHITGLAYSNTSELLIS-YN----DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        61 ~~~v~~i~~s~~~~~l~s-~~----d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      ...+..+.|+|...-++. |-    +. .-+||-+....               .....+..+.. ..+..=.||.++|.
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---------------~~~~~v~~~~~-~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---------------SNVKKVHRRME-GESVGHEFWVPDGS  250 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------------EESS---T-TEEEEEEEE-TTSS
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------------CcceeeecCCC-CcccccccccCCCC
Confidence            345677889997654333 53    22 13677766431               12222222322 23556667899998


Q ss_pred             EEEE-----ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC
Q 023246          135 YVMS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE  184 (285)
Q Consensus       135 ~l~~-----~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d  184 (285)
                      .+.-     ++.+..|.-+|+.+++......  ......+-.++++++++.=+.|
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence            7654     3335678888888876543322  2234455567898887765554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.58  E-value=4.4  Score=20.76  Aligned_cols=29  Identities=3%  Similarity=-0.099  Sum_probs=18.8

Q ss_pred             ccccceEeEEcCCCCeEEEEe-cC--CcEEEE
Q 023246          162 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW  190 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~-~d--~~i~iw  190 (285)
                      ....-....|+|||++|+-++ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345567789999999966655 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.89  E-value=31  Score=30.00  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCC---------CCC----CCCC-------C-CCcccceeeccccCC--CceEE
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPM---------PTD----FPPL-------P-DNAEKIMKANKQGRE--DHSRI  221 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~---------~~~----~~~~-------~-~~~~~~~~~~~~~~~--~~~~~  221 (285)
                      .|..+..++.|..++-+|.+|.+.++=++         .++    .+++       . ...-.+....|-...  +..++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46778889999999999999976654321         111    0111       0 011112233333332  55788


Q ss_pred             EeCCCCeEEEEEecccccc
Q 023246          222 TLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~~  240 (285)
                      ..+.|..+++|++.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            8899999999999887665

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.08  E-value=24  Score=28.18  Aligned_cols=192  Identities=7%  Similarity=-0.033  Sum_probs=0.0

Q ss_pred             CCC-cceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           59 KNN-IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        59 ~h~-~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      +|- ..|..+.....-.++..|. ---+-+|+....                .....+..-..+.-+..+.+   .++++
T Consensus        39 ghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~----------------t~~~l~~~i~~~~l~~Dv~v---se~yv   99 (370)
T COG5276          39 GHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQ----------------THDVLLSVINARDLFADVRV---SEEYV   99 (370)
T ss_pred             eeccCCcccccccccccccccCceEeeccccCcccc----------------cCcceEEEEehhhhhheeEe---cccEE


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccC-
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-  215 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  215 (285)
                      ..+..+.-+++.|+.+......+..-.-.=..-.|.-.|++...+..|.-+.+.|+....-.++.+.....--..+.-. 
T Consensus       100 yvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I  179 (370)
T COG5276         100 YVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI  179 (370)
T ss_pred             EEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE


Q ss_pred             CCceEEEeCCCCeEEEEEecccccceeEeeeccc-cccCCCCCcCeEEEeecCCC
Q 023246          216 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNA-ADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       216 ~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+.+...+..|+-+.+.|+.....+..+.+..-+ ..-...-.+++.|++...+|
T Consensus       180 SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg  234 (370)
T COG5276         180 SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG  234 (370)
T ss_pred             ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.04  E-value=17  Score=28.99  Aligned_cols=62  Identities=10%  Similarity=0.114  Sum_probs=42.7

Q ss_pred             CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe------cCCcEEEEcCCCCCCCCCCC
Q 023246          141 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG------IEKTVKLWAPMPTDFPPLPD  202 (285)
Q Consensus       141 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~------~d~~i~iwd~~~~~~~~~~~  202 (285)
                      ....|++||..+.+-..--.+-.+.|++|.|..+.+.++.|.      ....+..||........+..
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~   81 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG   81 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence            356799999886655544444567899999986666666664      34568889988776544443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.83  E-value=41  Score=30.63  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=26.9

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMG   92 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~   92 (285)
                      .+-.+.|+.+..+++...+|++++|++...
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecchh
Confidence            788999999999999999999999998754

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.33  E-value=6.7  Score=33.64  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG   92 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~   92 (285)
                      -++|.++..|-|++||--..               ..++.+.+-...|..|..+.+|+++.+.....+.+-|+...
T Consensus       574 GyIa~as~kGDirLyDRig~---------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik  634 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGK---------------RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK  634 (776)
T ss_pred             ceEEEecCCCceeeehhhcc---------------hhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence            59999999999999996533               22333366677899999999999888877788888888654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.88  E-value=29  Score=28.39  Aligned_cols=75  Identities=11%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             ceEeecccCceeeeeEEEec------CCCcEEEEecCCCeEEEEecCCCceEE---EE-ecccccceEeEEcCCCCeEEE
Q 023246          111 PQVYSGHRNSQTVKGVNFFG------PNDEYVMSGSDCGHLFIWKKKGGKLVR---LM-VGDRHVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       111 ~~~~~~~~~~~~i~~~~~~~------~~~~~l~~~~~dg~v~vwd~~~~~~~~---~~-~~h~~~v~~~~~~p~~~~l~t  180 (285)
                      ...+..|..   +..+.|..      -.+.++++.-..+.|....+..+..+.   .+ ......+..+++.|||.+.++
T Consensus       246 ~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~  322 (331)
T PF07995_consen  246 VFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVS  322 (331)
T ss_dssp             SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEE
T ss_pred             ceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEE
Confidence            344444433   56666531      246677777777888888887553322   22 233447899999999999888


Q ss_pred             EecCCcEE
Q 023246          181 CGIEKTVK  188 (285)
Q Consensus       181 ~~~d~~i~  188 (285)
                      -..+|.|.
T Consensus       323 ~d~~G~iy  330 (331)
T PF07995_consen  323 DDSDGKIY  330 (331)
T ss_dssp             E-TTTTEE
T ss_pred             ECCCCeEe
Confidence            77788763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=80.31  E-value=26  Score=27.41  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=65.3

Q ss_pred             ceEEEEEecCCCEEEE-e-cC--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           63 HITGLAYSNTSELLIS-Y-ND--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      .+...++++++..++. . .+  ..++++.....                 ....+.+.    .+..-.| ++++...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v   82 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV   82 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence            6889999999986665 3 24  44555544322                 22222222    2777775 888887777


Q ss_pred             ecCCCeEEEEe-cCCCceE-EEEecc--cccceEeEEcCCCCeEEEEe---cCCcEEEEcC
Q 023246          139 GSDCGHLFIWK-KKGGKLV-RLMVGD--RHVVNQLEPHPHIPMFATCG---IEKTVKLWAP  192 (285)
Q Consensus       139 ~~~dg~v~vwd-~~~~~~~-~~~~~h--~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~  192 (285)
                      ...+....++. ..+++.. ..+...  ...|..+.++|||..++...   .++.|.+--+
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen   83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            67666666663 3333322 112211  12899999999999866555   3466766654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		3e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-04

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 104 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 163
           D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ + G  
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 164 HVVNQLEPHPHIPMFATCGIE--KTVKLW 190
            VV     HP   + A+  +E  KT+KLW
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 292 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 296
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 297 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 280 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 271 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 276 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 274 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 298
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 299 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KLW
Sbjct: 281 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 190
           + G   VV     HP   + A+  +E  KT+KL+
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 64  ITGLAYSNTSELLISYNDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 122
           + G+A+S   + + S +D+  V L+ +N  L                  Q  +GH  S +
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGH--SSS 223
Query: 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 182
           V+GV  F P+ + + S SD   + +W + G +L++ + G    VN +   P     A+  
Sbjct: 224 VRGV-AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 183 IEKTVKLW 190
            +KTVKLW
Sbjct: 282 DDKTVKLW 289

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 99  SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 158
           +L   D  K +  + Y+GH+N +     NF     ++++SGS+   ++IW  +  ++V+ 
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 159 MVGDRHVVNQLEPHPHIPMFATCGIE--KTVKL 189
           + G   VV     HP   + A+  +E  KT+KL
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKL 310

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 116 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 175
           GH N   V+GV  F    ++++S +D   L +W  K  + ++ +    H V  L+ H   
Sbjct: 336 GHDN--WVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392
Query: 176 PMFATCGIEKTVKLW 190
           P   T  +++TVK+W
Sbjct: 393 PYVVTGSVDQTVKVW 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.76
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.51
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.41
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.41
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.35
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.33
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.32
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.31
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.24
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.12
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.04
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.04
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.02
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.95
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.84
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.84
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.71
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.7
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.64
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.62
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.61
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.6
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.59
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.58
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.43
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.37
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.34
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.33
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.28
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.26
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.21
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.04
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.01
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.0
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.97
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.96
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.93
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.92
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.85
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.84
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.46
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.43
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.39
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.27
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.12
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.11
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.09
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.95
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.93
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.92
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.86
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.77
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.68
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.29
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.26
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.69
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.64
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.58
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.42
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.45
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.36
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.32
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.2
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.97
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.52
3ott_A	758	Two-component system sensor histidine kinase; beta	93.48
3ott_A	758	Two-component system sensor histidine kinase; beta	93.33
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.97
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.23
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.72
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.62
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.04
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.16
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.1
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	87.86
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.37
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.35

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6e-37  Score=244.48  Aligned_cols=233  Identities=18%  Similarity=0.231  Sum_probs=190.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+|++|+.||+|++||+.+++              ....+ ..|..+|.+++|+|++++|+++ .|
T Consensus        13 ~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~--------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A           13 SDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQV--------------EVRSI-QVTETPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             CSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCc--------------eeEEe-eccCCcEEEEEEeCCCCEEEEECCC
Confidence            4689999999986 899999999999999999876              22233 6788999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc-eEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~  160 (285)
                      ++|++||+.++                +.+..+.+|...  |.+++| +|+++++++|+.|++|++||++++. ....+.
T Consensus        77 ~~i~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~  137 (304)
T 2ynn_A           77 FRIRVFNYNTG----------------EKVVDFEAHPDY--IRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (304)
T ss_dssp             SEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred             CEEEEEECCCC----------------cEEEEEeCCCCc--EEEEEE-cCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence            99999999988                688889999977  999997 9999999999999999999998774 557788


Q ss_pred             cccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCC-CCC-CCCcccceeeccccC-CCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +|...|.+++|+| ++.+|++++.|++|++||++.... ..+ ..+...+....+... +..++++++.|+.|++||+++
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            9999999999999 578899999999999999976543 222 233344444444332 456899999999999999988


Q ss_pred             cccceeE----------eeeccccccCCCCCcCeEEEeecCCCC
Q 023246          237 RQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       237 ~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ++.+..+          .+.|+...+++...++.|.+++...+.
T Consensus       218 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            7654443          456666677777788889988877654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-36  Score=252.43  Aligned_cols=234  Identities=15%  Similarity=0.251  Sum_probs=197.6

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ++.+|++++|+|++ .+|++|+.||+|+|||+.+++              ....+ .+|...|++++|+|++++|+++ .
T Consensus       107 h~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~--------------~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--------------FERTL-KGHTDSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC--------------CCEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-eccCCcEEEEEEcCCCCEEEEEeC
Confidence            35689999999985 899999999999999999886              22333 7899999999999999999986 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |++|++||+.+.                +.+..+.+|...  |.+++| +|+++++++|+.|+.|++||+++++++..+.
T Consensus       171 D~~i~iwd~~~~----------------~~~~~~~~h~~~--V~~v~~-~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~  231 (410)
T 1vyh_C          171 DMTIKLWDFQGF----------------ECIRTMHGHDHN--VSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  231 (410)
T ss_dssp             TSCCCEEETTSS----------------CEEECCCCCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCC----------------ceeEEEcCCCCC--EEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            999999999877                677888889876  999997 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccC-------------------CCceE
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR-------------------EDHSR  220 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~-------------------~~~~~  220 (285)
                      +|...|.+++++|++.+|++++.|++|++||++.... ..+..|...+..+.+...                   .+.++
T Consensus       232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  311 (410)
T 1vyh_C          232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  311 (410)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence            9999999999999999999999999999999987753 456667776666655332                   14589


Q ss_pred             EEeCCCCeEEEEEeccccccee----------EeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          221 ITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ++++.|+.|++||++++..+..          +.+.+++..+.+...++.|.+++...+.
T Consensus       312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999987654433          3456667777777788889998876543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=245.38  Aligned_cols=204  Identities=12%  Similarity=0.124  Sum_probs=168.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~   80 (285)
                      ...|++++|+|++ .+|++|+.|++|++||+.+++              +...+ .+|...|++++|++++. +|+++ .
T Consensus       127 ~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~--------------~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~  190 (344)
T 4gqb_B          127 DDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQV--------------VLSSY-RAHAAQVTCVAASPHKDSVFLSCSE  190 (344)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--------------EEEEE-CCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-cCcCCceEEEEecCCCCCceeeecc
Confidence            4689999999986 899999999999999999886              33333 78999999999999985 67775 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |++|++||+.++                +....+..+.....+.+++| +| +++++++|+.||.|++||+++++++..+
T Consensus       191 D~~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~-~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~  253 (344)
T 4gqb_B          191 DNRILLWDTRCP----------------KPASQIGCSAPGYLPTSLAW-HPQQSEVFVFGDENGTVSLVDTKSTSCVLSS  253 (344)
T ss_dssp             TSCEEEEETTSS----------------SCEEECC----CCCEEEEEE-CSSCTTEEEEEETTSEEEEEESCC--CCEEE
T ss_pred             cccccccccccc----------------ceeeeeecceeeccceeeee-cCCCCcceEEeccCCcEEEEECCCCcEEEEE
Confidence            999999999887                56666544333234889997 66 5678999999999999999999999999


Q ss_pred             ecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .+|...|++++|+|++ ++|++++.|++|++||++.+++..+.+|...+..+.+......++++++.|++|++|++....
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9999999999999998 469999999999999999888777888999988887754455577899999999999998764


Q ss_pred             c
Q 023246          239 T  239 (285)
Q Consensus       239 ~  239 (285)
                      .
T Consensus       334 ~  334 (344)
T 4gqb_B          334 L  334 (344)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=244.60  Aligned_cols=234  Identities=10%  Similarity=0.064  Sum_probs=185.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      .+|++++|+|+  ..|++|+.||+|+|||+.+++...           .......+|...|++++|+|++++|+++ .|+
T Consensus        83 ~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~  149 (344)
T 4gqb_B           83 AGVADLTWVGE--RGILVASDSGAVELWELDENETLI-----------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI  149 (344)
T ss_dssp             SCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCE-----------EEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCcee-----------EeeccccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            46999999996  478899999999999999886321           1122235899999999999999999996 599


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEEEe-
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMV-  160 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~-  160 (285)
                      +|++||+.++                +.+..+.+|...  |.+++| ++++ .++++++.|+.|++||+++++.+..+. 
T Consensus       150 ~i~iwd~~~~----------------~~~~~~~~h~~~--V~~~~~-~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  210 (344)
T 4gqb_B          150 CIKVWDLAQQ----------------VVLSSYRAHAAQ--VTCVAA-SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC  210 (344)
T ss_dssp             CEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CSSCTTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred             eEEEEECCCC----------------cEEEEEcCcCCc--eEEEEe-cCCCCCceeeeccccccccccccccceeeeeec
Confidence            9999999988                788999999977  999997 8877 578999999999999999999988775 


Q ss_pred             -cccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          161 -GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       161 -~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                       .|...+.+++|+|+ +++|++|+.|++|++||+++++ +..+.+|...+..+.+......++++++.|++|++||+..+
T Consensus       211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence             45567999999995 4578999999999999998776 46678888888887664444568999999999999999877


Q ss_pred             cccee---------Eeeeccccc-cCCCCCcCeEEEeecCCC
Q 023246          238 QTLAY---------RERRYNAAD-FESDEEEGETYLLGFSDS  269 (285)
Q Consensus       238 ~~~~~---------~~~~~~~~~-~~~~~~~~~v~~~~~~~~  269 (285)
                      +....         +.++|+... +++...++.|.++.+...
T Consensus       291 ~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          291 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            54432         245555544 345556677877776554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.9e-36  Score=239.66  Aligned_cols=205  Identities=16%  Similarity=0.239  Sum_probs=177.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|.+++|+|++ .++++|+.|++|++||+.+++.              ...+ ..|...+.+++|+|++++|+++. |
T Consensus        80 ~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~--------------~~~~-~~~~~~~~~~~~spdg~~l~~g~~d  143 (321)
T 3ow8_A           80 QLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQ--------------IKSI-DAGPVDAWTLAFSPDSQYLATGTHV  143 (321)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEE--------------EEEE-ECCTTCCCCEEECTTSSEEEEECTT
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCE--------------EEEE-eCCCccEEEEEECCCCCEEEEEcCC
Confidence            4679999999975 8999999999999999998862              2222 56777889999999999999975 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++|++..+                +....+..+...  +.+++| +|++++|++|+.||.|++||+++++.+..+.+
T Consensus       144 g~v~i~~~~~~----------------~~~~~~~~~~~~--v~~~~~-spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~  204 (321)
T 3ow8_A          144 GKVNIFGVESG----------------KKEYSLDTRGKF--ILSIAY-SPDGKYLASGAIDGIINIFDIATGKLLHTLEG  204 (321)
T ss_dssp             SEEEEEETTTC----------------SEEEEEECSSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CcEEEEEcCCC----------------ceeEEecCCCce--EEEEEE-CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence            99999999887                566777777755  999997 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |...|.+++|+|++++|++++.|++|++||++.... ..+.+|...+..+.+ .+++.++++++.|+.|++||+.+++.+
T Consensus       205 h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-sp~~~~l~s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF-CPDDTHFVSSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence            999999999999999999999999999999987763 567778888777765 456678999999999999999887655


Q ss_pred             eeE
Q 023246          241 AYR  243 (285)
Q Consensus       241 ~~~  243 (285)
                      ..+
T Consensus       284 ~~~  286 (321)
T 3ow8_A          284 HTF  286 (321)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.8e-35  Score=233.73  Aligned_cols=233  Identities=16%  Similarity=0.296  Sum_probs=191.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+|++|+.||.|++|++.+++              ....+ .+|...|.+++|+|++++|+++ .|
T Consensus        23 ~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           23 TKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGK--------------FEKTI-SGHKLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcc--------------cchhh-ccCCCceEEEEEcCCCCEEEEECCC
Confidence            5689999999975 899999999999999998775              22222 7899999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||+.++                +.+..+.+|...  |.+++| +|+++++++++.|+.|++||+++++.+..+..
T Consensus        87 ~~i~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  147 (312)
T 4ery_A           87 KTLKIWDVSSG----------------KCLKTLKGHSNY--VFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA  147 (312)
T ss_dssp             SEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CEEEEEECCCC----------------cEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCcEEEEECCCCEEEEEecC
Confidence            99999999887                678889999876  999997 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |...|.+++|+|++++|++++.|+.|++||++.+.. ..+.......+......+++.++++++.|+.|++||+++.+.+
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL  227 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            999999999999999999999999999999987653 3333233333333344667778999999999999999887655


Q ss_pred             eeEee-------------eccccccCCCCCcCeEEEeecCCCC
Q 023246          241 AYRER-------------RYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       241 ~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ..+..             .++...+..+..++.|++++...++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence            44321             1233445666777888888877654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=236.68  Aligned_cols=235  Identities=13%  Similarity=0.184  Sum_probs=195.3

Q ss_pred             CccceeEEEEcCC---CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            2 NSIRLNAIVIDPR---NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~---~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      +..+|++++|+|+   ++.+|++|+.|++|+||++..++.             .....+.+|...|.+++|++++.++++
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------~~~~~l~gh~~~v~~~~~~~~~~~l~s   97 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------DLQWSLEGHQLGVVSVDISHTLPIAAS   97 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------eeeeeeccCCCCEEEEEECCCCCEEEE
Confidence            3578999999984   246999999999999999986642             122223789999999999999999999


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      + .|++|++||+.++                +.+..+..+...  +.+++| +|+++++++++.+|.|++|++++++...
T Consensus        98 ~s~D~~i~lWd~~~~----------------~~~~~~~~~~~~--~~~~~~-spdg~~l~~g~~dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A           98 SSLDAHIRLWDLENG----------------KQIKSIDAGPVD--AWTLAF-SPDSQYLATGTHVGKVNIFGVESGKKEY  158 (321)
T ss_dssp             EETTSEEEEEETTTT----------------EEEEEEECCTTC--CCCEEE-CTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred             EeCCCcEEEEECCCC----------------CEEEEEeCCCcc--EEEEEE-CCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence            6 4999999999887                677888877765  889997 9999999999999999999999999999


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      .+..|...|.+++|+|++++|++++.|+.|++||+++++ +..+.+|...+..+.+ .+++.++++++.|+.|++||++.
T Consensus       159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF-SPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEE-CTTSCEEEEECTTSCEEEEETTT
T ss_pred             EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEE-cCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999999999999999999999999999998776 4567777777766655 55677999999999999999987


Q ss_pred             ccccee----------EeeeccccccCCCCCcCeEEEeecCCC
Q 023246          237 RQTLAY----------RERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       237 ~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+....          +.+.|++..+.+...++.|.+++...+
T Consensus       238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            654433          356667777777777888888887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-35  Score=244.19  Aligned_cols=228  Identities=14%  Similarity=0.222  Sum_probs=189.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +...|++++|+|++ .+|++|+.|++|++||+.+++              +...+ .+|...|.+++|+|++.+|+++ .
T Consensus       149 h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~--------------~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~  212 (410)
T 1vyh_C          149 HTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFE--------------CIRTM-HGHDHNVSSVSIMPNGDHIVSASR  212 (410)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSC--------------EEECC-CCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc--------------eeEEE-cCCCCCEEEEEEeCCCCEEEEEeC
Confidence            35689999999975 899999999999999998775              33333 7899999999999999999886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |++|++||+.++                ..+..+.+|...  |.++.+ +++++++++|+.|+.|++||+.++++...+.
T Consensus       213 D~~i~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~  273 (410)
T 1vyh_C          213 DKTIKMWEVQTG----------------YCVKTFTGHREW--VRMVRP-NQDGTLIASCSNDQTVRVWVVATKECKAELR  273 (410)
T ss_dssp             TSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CCeEEEEECCCC----------------cEEEEEeCCCcc--EEEEEE-CCCCCEEEEEcCCCeEEEEECCCCceeeEec
Confidence            999999999987                688889999876  999997 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCC--------------------CCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCce
Q 023246          161 GDRHVVNQLEPHPH--------------------IPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHS  219 (285)
Q Consensus       161 ~h~~~v~~~~~~p~--------------------~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  219 (285)
                      +|...|.+++|+|+                    +.+|++|+.|++|++||++.+. +..+.+|...+..+.+ .+++.+
T Consensus       274 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~-~~~g~~  352 (410)
T 1vyh_C          274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-HSGGKF  352 (410)
T ss_dssp             CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CSSSSC
T ss_pred             CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE-cCCCCE
Confidence            99999999999996                    6689999999999999998775 4566778777766654 556778


Q ss_pred             EEEeCCCCeEEEEEecccccceeE----------eeeccccccCCCCCcCeEEEee
Q 023246          220 RITLTPDVIMHVLRLQRRQTLAYR----------ERRYNAADFESDEEEGETYLLG  265 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~  265 (285)
                      +++++.|+.|++||+...+.+..+          .+.+++..++++..++.|.+++
T Consensus       353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            999999999999999887665444          2333444444444444554443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-35  Score=237.62  Aligned_cols=201  Identities=19%  Similarity=0.308  Sum_probs=169.4

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      .+|++++|+|++ .+||+|+.|++|+|||+.+++..            +...+..+|...|++++|+|++++|++++ |+
T Consensus        17 ~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A           17 SRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWI------------CKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             SCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEE------------EEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcce------------eeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            379999999986 89999999999999999876421            22233368999999999999999999965 99


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---eEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~  159 (285)
                      +|++|+.....              .+.+..+.+|...  |.+++| +|++++|++++.|+.|++||++++.   ++..+
T Consensus        84 ~v~iw~~~~~~--------------~~~~~~~~~h~~~--v~~v~~-sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           84 TTCIWKKNQDD--------------FECVTTLEGHENE--VKSVAW-APSGNLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             CEEEEEECCC---------------EEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             cEEEEEccCCC--------------eEEEEEccCCCCC--ceEEEE-eCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            99999987641              1245778889877  999997 9999999999999999999998764   45677


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .+|...|.+++|+|++++|++++.|++|++|+.+...   ...+.+|...+..+.+ .+++.++++++.|+.|++|+..
T Consensus       147 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~-sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF-DPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEEEE
T ss_pred             cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE-CCCCCEEEEEeCCCeEEEeccc
Confidence            8899999999999999999999999999999987653   3467778888877765 5567789999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-34  Score=234.99  Aligned_cols=234  Identities=11%  Similarity=0.126  Sum_probs=191.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+|++|+.||+|++||+.+++              ....+ ..|...|.+++|+|++++|+++ .|
T Consensus        55 ~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~--------------~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d  118 (340)
T 1got_B           55 LAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTN--------------KVHAI-PLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCC--------------EEEEE-ECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCC--------------cceEe-ecCCccEEEEEECCCCCEEEEEeCC
Confidence            5689999999985 899999999999999998876              22222 6788899999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++|++.+..            ........+.+|...  +.++.| ++++. +++++.|+.|++||+++++.+..+.+
T Consensus       119 ~~v~iw~~~~~~------------~~~~~~~~~~~h~~~--v~~~~~-~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~  182 (340)
T 1got_B          119 NICSIYNLKTRE------------GNVRVSRELAGHTGY--LSCCRF-LDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             CEEEEEETTTCS------------BSCEEEEEEECCSSC--EEEEEE-EETTE-EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CeEEEEECccCC------------CcceeEEEecCCCcc--EEEEEE-CCCCc-EEEEECCCcEEEEECCCCcEEEEEcC
Confidence            999999997651            011244567788866  999997 77665 88999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      |...|.+++|+|+++++++++.|++|++||++.+. ...+.+|...+..+.+ .+++.++++++.|+.|++||++..+.+
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~-~p~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEE-cCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence            99999999999999999999999999999998776 4567778877776655 456778999999999999999876443


Q ss_pred             e------------eEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          241 A------------YRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       241 ~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .            .+.+++++..+..+..++.+.+++...+
T Consensus       262 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence            2            2345666777777777778888876554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5e-34  Score=226.84  Aligned_cols=235  Identities=14%  Similarity=0.149  Sum_probs=184.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~   79 (285)
                      +...|++++|+|++ .+||+|+.|++|+|||+.....       .     ... .+.+|.++|.+++|+++  +++|+++
T Consensus         8 h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~-------~-----~~~-~l~gH~~~V~~v~~s~~~~g~~l~s~   73 (297)
T 2pm7_B            8 HNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETH-------K-----LID-TLTGHEGPVWRVDWAHPKFGTILASC   73 (297)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCB-------C-----CCE-EECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCc-------E-----EEE-EEccccCCeEEEEecCCCcCCEEEEE
Confidence            35789999999985 8999999999999999975421       0     222 23789999999999864  7899886


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCc--
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK--  154 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~--  154 (285)
                       .|++|++||+.++.              ...+..+..|...  |.+++| +|+  +++|++++.|+.|++||++++.  
T Consensus        74 s~D~~v~iWd~~~~~--------------~~~~~~~~~h~~~--v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~~~~~  136 (297)
T 2pm7_B           74 SYDGKVMIWKEENGR--------------WSQIAVHAVHSAS--VNSVQW-APHEYGPMLLVASSDGKVSVVEFKENGTT  136 (297)
T ss_dssp             ETTTEEEEEEBSSSC--------------BCCCEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred             cCCCEEEEEEcCCCc--------------eEEEEEeecCCCc--eeEEEe-CcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence             59999999998651              1245667778866  999997 887  8899999999999999998763  


Q ss_pred             eEEEEecccccceEeEEcCC-------------CCeEEEEecCCcEEEEcCCCCC-----CCCCCCCcccceeeccccCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPH-------------IPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGRE  216 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~-------------~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~  216 (285)
                      ....+.+|...|.+++|+|+             +++|++++.|++|++||++...     ...+.+|...+..+.+.+..
T Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence            24567789999999999997             4689999999999999997654     24577888888888775432


Q ss_pred             --CceEEEeCCCCeEEEEEecccc------c---------ceeEeeeccccccCCCCCcCeEEEeecC
Q 023246          217 --DHSRITLTPDVIMHVLRLQRRQ------T---------LAYRERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       217 --~~~~~~~s~d~~i~vwd~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                        ..++++++.|+.|++||++...      .         +..+.+++++..++....++.|.+++..
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence              4789999999999999987632      1         1123566777777777777778877654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-34  Score=231.70  Aligned_cols=211  Identities=15%  Similarity=0.234  Sum_probs=177.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.++|++++|+|+++++|++|+.|++|++|++......         .. .+...+.+|...|.+++|+|++++|++++ 
T Consensus        16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~---------~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A           16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK---------FG-VPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE---------EE-EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc---------cc-ccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            45789999999976689999999999999999753210         00 11222378999999999999999999964 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |++|++||+.++                +.+..+.+|...  |.+++| +|+++++++|+.|+.|++||++ ++++..+.
T Consensus        86 D~~v~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~  145 (319)
T 3frx_A           86 DKTLRLWDVATG----------------ETYQRFVGHKSD--VMSVDI-DKKASMIISGSRDKTIKVWTIK-GQCLATLL  145 (319)
T ss_dssp             TSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             CCEEEEEECCCC----------------CeeEEEccCCCc--EEEEEE-cCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence            999999999988                678889999977  999997 9999999999999999999997 67888899


Q ss_pred             cccccceEeEEcCCC------CeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          161 GDRHVVNQLEPHPHI------PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~------~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      +|...|.+++|+|..      ..+++++.|++|++||++.... ..+.+|...+..+.+ .+++.++++++.|+.|++||
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~-sp~g~~l~s~~~dg~i~iwd  224 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLWN  224 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE-CTTSSEEEEEETTCEEEEEE
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE-cCCCCEEEEEeCCCeEEEEE
Confidence            999999999999954      4799999999999999987653 456678887776654 55777999999999999999


Q ss_pred             ecccccceeE
Q 023246          234 LQRRQTLAYR  243 (285)
Q Consensus       234 ~~~~~~~~~~  243 (285)
                      +.+.+.+..+
T Consensus       225 ~~~~~~~~~~  234 (319)
T 3frx_A          225 LAAKKAMYTL  234 (319)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCcEEEEe
Confidence            9887665544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.8e-34  Score=231.47  Aligned_cols=239  Identities=11%  Similarity=0.131  Sum_probs=193.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +..+|++++|+|++ .+|++|+.||+|+|||..+++              ....+ ..|...|.+++|+|++.+|+++. 
T Consensus        63 H~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~-~~~~~~v~~~~~sp~g~~lasg~~  126 (354)
T 2pbi_B           63 HGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTN--------------KEHAV-TMPCTWVMACAYAPSGCAIACGGL  126 (354)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--------------EEEEE-ECSSSCCCEEEECTTSSEEEEEST
T ss_pred             CCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCC--------------cceEE-ecCCCCEEEEEECCCCCEEEEeeC
Confidence            35689999999986 899999999999999998775              22222 56778899999999999999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |+.+++|++......          ........+..|...  |.+++| +++++.+++++.|++|++||+++++++..+.
T Consensus       127 d~~i~v~~~~~~~~~----------~~~~~~~~~~~h~~~--v~~~~~-~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~  193 (354)
T 2pbi_B          127 DNKCSVYPLTFDKNE----------NMAAKKKSVAMHTNY--LSACSF-TNSDMQILTASGDGTCALWDVESGQLLQSFH  193 (354)
T ss_dssp             TSEEEEEECCCCTTC----------CSGGGCEEEEECSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEEeccccc----------cccccceeeeccCCc--EEEEEE-eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence            999999998654100          011345667788866  999997 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcC--CCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          161 GDRHVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       161 ~h~~~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +|...|.+++|+|  ++++|++++.|++|++||++.+. +..+..|...+..+.+ .+++.++++++.|+.|++||++..
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~-~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY-YPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE-eCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999988  46799999999999999998876 4566778877777655 456678999999999999999875


Q ss_pred             ccce------------eEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          238 QTLA------------YRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       238 ~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      +.+.            .+.+++++..+..+..++.+.+++...+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence            4332            23456666677777777788888876553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5e-34  Score=231.08  Aligned_cols=209  Identities=15%  Similarity=0.238  Sum_probs=172.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      +...|.+++|+|++ .+|++|+.|+.|++|++.+.+..           ......+.+|...|.++.|++++.+++++.|
T Consensus        96 ~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d  163 (340)
T 1got_B           96 RSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGN-----------VRVSRELAGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
T ss_dssp             SSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBS-----------CEEEEEEECCSSCEEEEEEEETTEEEEEETT
T ss_pred             CCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCc-----------ceeEEEecCCCccEEEEEECCCCcEEEEECC
Confidence            34578999999975 89999999999999999865411           0112223689999999999999886666779


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|++||+.++                +.+..+.+|...  |.+++| +|+++++++|+.|+.|++||+++++++..+.+
T Consensus       164 ~~i~~wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          164 TTCALWDIETG----------------QQTTTFTGHTGD--VMSLSL-APDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             SCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             CcEEEEECCCC----------------cEEEEEcCCCCc--eEEEEE-CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Confidence            99999999887                677888889877  999997 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC--CCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      |...|.+++|+|++++|++++.|++|++||++.... ..+.  .+...+..+. ..+++.++++++.|+.|++||+.+.+
T Consensus       225 h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE-ECCCCCEEEEECCCCeEEEEEcccCc
Confidence            999999999999999999999999999999987653 2222  1222344443 35677899999999999999988766


Q ss_pred             ccee
Q 023246          239 TLAY  242 (285)
Q Consensus       239 ~~~~  242 (285)
                      .+..
T Consensus       304 ~~~~  307 (340)
T 1got_B          304 RAGV  307 (340)
T ss_dssp             EEEE
T ss_pred             EeeE
Confidence            5443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-34  Score=238.42  Aligned_cols=249  Identities=12%  Similarity=0.110  Sum_probs=182.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .++|++++|+|++ .+|++|+.||+|+|||+.+++.              ...+ ..|...|.+++|+|++++|+++ .|
T Consensus        66 ~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~--------------~~~~-~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           66 SGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQK--------------THAI-KLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             SSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEE--------------EEEE-ECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             ccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcc--------------ceEE-ecCCCCEEEEEECCCCCEEEEeeCC
Confidence            5789999999975 8999999999999999988762              2222 5677788888888888888885 48


Q ss_pred             CcEEEEEcCCCCC----------------------------------CCCCCCCCccccCCCCceEe-----ecccCcee
Q 023246           82 ELVYLFEKNMGLG----------------------------------PSPLSLSPEDLQKREEPQVY-----SGHRNSQT  122 (285)
Q Consensus        82 ~~i~iwd~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  122 (285)
                      +.+++|++.....                                  .....+..+++.+.+.+..+     .+|...  
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~--  207 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD--  207 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC--
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC--
Confidence            8888888754210                                  00111122223333444444     456655  


Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEecC-CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL  200 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~  200 (285)
                      +.+++|.+++++++++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++++|++++.|++|++||++.+.. ..+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            89999744588999999999999999998 4578889999999999999999999999999999999999987642 222


Q ss_pred             CCCc------ccceeeccccCCCceEEEeCCCCeEEEEEecccccce--------------eEeeeccccccCCCCCcCe
Q 023246          201 PDNA------EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA--------------YRERRYNAADFESDEEEGE  260 (285)
Q Consensus       201 ~~~~------~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~  260 (285)
                      ..+.      ...+......++++++++++.||.|++||+...+...              .+.+++++..++.++.++.
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence            1111      1112223345677899999999999999986554332              2356677777888888888


Q ss_pred             EEEeecCCC
Q 023246          261 TYLLGFSDS  269 (285)
Q Consensus       261 v~~~~~~~~  269 (285)
                      +.++++...
T Consensus       368 i~iW~~~~~  376 (380)
T 3iz6_a          368 LKIWAFSGH  376 (380)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEecCCC
Confidence            888887754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.1e-34  Score=229.78  Aligned_cols=206  Identities=18%  Similarity=0.186  Sum_probs=172.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.+++|+|++ ++|++|+.|++|++||+.+++              ....+ .+|...|++++|+|++.+|+++ .|
T Consensus        55 ~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D  118 (304)
T 2ynn_A           55 ETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE--------------KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDD  118 (304)
T ss_dssp             SSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC--------------EEEEE-ECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCcEEEEEEeCCC-CEEEEECCCCEEEEEECCCCc--------------EEEEE-eCCCCcEEEEEEcCCCCEEEEECCC
Confidence            4679999999975 899999999999999999886              33333 7899999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++|++||+..+.               .....+.+|...  |.+++| +| ++.++++|+.|+.|++||++++.....+.
T Consensus       119 ~~v~lWd~~~~~---------------~~~~~~~~h~~~--v~~v~~-~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~  180 (304)
T 2ynn_A          119 LTVKLWNWENNW---------------ALEQTFEGHEHF--VMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT  180 (304)
T ss_dssp             SCEEEEEGGGTT---------------EEEEEECCCCSC--EEEEEE-CTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred             CeEEEEECCCCc---------------chhhhhcccCCc--EEEEEE-CCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence            999999997651               345677888876  999997 87 67899999999999999998877665554


Q ss_pred             -cccccceEeEEcC--CCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          161 -GDRHVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 -~h~~~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                       .|...+..++|+|  ++++|++++.|++|++||++.+. +..+.+|...+..+.+ .++..++++++.|+.|++||+.+
T Consensus       181 ~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~-~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSCEEEEETTT
T ss_pred             cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE-CCCCCEEEEEcCCCeEEEEECCC
Confidence             5667899999987  67799999999999999998775 4667778877766654 55667899999999999999988


Q ss_pred             cccceeE
Q 023246          237 RQTLAYR  243 (285)
Q Consensus       237 ~~~~~~~  243 (285)
                      .+.+..+
T Consensus       260 ~~~~~~~  266 (304)
T 2ynn_A          260 YKVEKTL  266 (304)
T ss_dssp             CCEEEEE
T ss_pred             Cceeeec
Confidence            7766554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.6e-34  Score=231.40  Aligned_cols=240  Identities=12%  Similarity=0.109  Sum_probs=179.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeC------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGS------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL   76 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l   76 (285)
                      ...|++++|+||| .+||+|+.      |+.|++|+..++....           .......+|...|++++|+|++.++
T Consensus        42 ~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~s~d~~~l  109 (357)
T 4g56_B           42 EVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----------SLCTAGVQTEAGVTDVAWVSEKGIL  109 (357)
T ss_dssp             CSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CG-----------GGCSEEEECSSCEEEEEEETTTEEE
T ss_pred             cCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcce-----------eEecccCCCCCCEEEEEEcCCCCEE
Confidence            4679999999986 89999997      7789999987765211           1111124688899999999999988


Q ss_pred             EEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE
Q 023246           77 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        77 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  156 (285)
                      +++.|++|+|||+.++...            ........+|...  |.+++| +|++++|++|+.|+.|++||+++++++
T Consensus       110 ~~s~dg~v~lWd~~~~~~~------------~~~~~~~~~h~~~--V~~v~~-spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B          110 VASDSGAVELWEILEKESL------------LVNKFAKYEHDDI--VKTLSV-FSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             EEETTSCEEEC--------------------CCCCEEECCCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEECCCEEEEeecccccee------------EEEeeccCCCCCC--EEEEEE-CCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            8888999999999876200            0112234467766  999997 999999999999999999999999999


Q ss_pred             EEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC-C--CCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          157 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-P--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      ..+.+|...|.+++|+|++. ++++++.|++|++||++.++. .  .+..+...+..+.+.+....++++++.|+.|++|
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            99999999999999999886 689999999999999987753 2  2333455566665544456688999999999999


Q ss_pred             EecccccceeE----------eeecccc-ccCCCCCcCeEEEeecCCC
Q 023246          233 RLQRRQTLAYR----------ERRYNAA-DFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       233 d~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~v~~~~~~~~  269 (285)
                      |+++.+.+..+          .++++.. .+++...++.|.+++...+
T Consensus       255 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          255 NIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             ESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             ECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            99887655443          3455543 4566666777888876654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.5e-34  Score=234.24  Aligned_cols=204  Identities=12%  Similarity=0.114  Sum_probs=168.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEE-ec
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS-YN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s-~~   80 (285)
                      ...|++++|+|++ .+|++|+.|++|++||+.+++              ....+ .+|...|++++|++++. ++++ +.
T Consensus       139 ~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~--------------~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~  202 (357)
T 4g56_B          139 DDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKA--------------VLKSY-NAHSSEVNCVAACPGKDTIFLSCGE  202 (357)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTE--------------EEEEE-CCCSSCEEEEEECTTCSSCEEEEET
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-cCCCCCEEEEEEccCCCceeeeecc
Confidence            4679999999985 899999999999999999886              33333 78999999999999885 6666 46


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |++|++||+.++                +....+..+.....+.+++| +|+ +.++++|+.|+.|++||+++++++..+
T Consensus       203 dg~v~~wd~~~~----------------~~~~~~~~~~~~~~v~~v~~-sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~  265 (357)
T 4g56_B          203 DGRILLWDTRKP----------------KPATRIDFCASDTIPTSVTW-HPEKDDTFACGDETGNVSLVNIKNPDSAQTS  265 (357)
T ss_dssp             TSCEEECCTTSS----------------SCBCBCCCTTCCSCEEEEEE-CTTSTTEEEEEESSSCEEEEESSCGGGCEEE
T ss_pred             CCceEEEECCCC----------------ceeeeeeeccccccccchhh-hhcccceEEEeecccceeEEECCCCcEeEEE
Confidence            999999999877                44444443333234899997 776 578899999999999999999999999


Q ss_pred             ecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .+|...|++++|+|++ ++|++++.|++|++||++.+++....+|...+..+.+.+.++.++++++.|++|++|++.+..
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            9999999999999987 469999999999999999888766667888888887654567799999999999999997653


Q ss_pred             c
Q 023246          239 T  239 (285)
Q Consensus       239 ~  239 (285)
                      .
T Consensus       346 ~  346 (357)
T 4g56_B          346 R  346 (357)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-34  Score=229.87  Aligned_cols=240  Identities=16%  Similarity=0.219  Sum_probs=172.6

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +..+|++++|+|++ .+|++|+.|++|+|||+......        .........+.+|...|.+++|+|++++|++++ 
T Consensus        57 h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           57 HKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADR--------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             CCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             ccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCc--------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            35689999999985 89999999999999998643210        000012223378999999999999999999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--ceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~  158 (285)
                      |++|++||+....            ...+.+..+.+|...  |.+++| +|++++|++++.|+.|++||..++  +++..
T Consensus       128 D~~v~iwd~~~~~------------~~~~~~~~~~~h~~~--v~~v~~-~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~  192 (330)
T 2hes_X          128 DKSVWIWETDESG------------EEYECISVLQEHSQD--VKHVIW-HPSEALLASSSYDDTVRIWKDYDDDWECVAV  192 (330)
T ss_dssp             TSCEEEEECCTTC------------CCCEEEEEECCCSSC--EEEEEE-CSSSSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEeccCCC------------CCeEEEEEeccCCCc--eEEEEE-CCCCCEEEEEcCCCeEEEEECCCCCeeEEEE
Confidence            9999999995320            011345677888876  999997 999999999999999999998766  67888


Q ss_pred             EecccccceEeEEcCC--CCeEEEEecCCcEEEEcCCCCC---------CCCCCC-CcccceeeccccCCCceEEEeCCC
Q 023246          159 MVGDRHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTD---------FPPLPD-NAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      +.+|...|.+++|+|+  +.+|++++.|++|++|+++...         ...+.. |...+..+.+.  .+.++++++.|
T Consensus       193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~~l~s~~~d  270 (330)
T 2hes_X          193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG--FNGLIASVGAD  270 (330)
T ss_dssp             ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC--TTSCEEEEETT
T ss_pred             ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc--CCCEEEEEeCC
Confidence            9999999999999998  6689999999999999986531         122333 66667666654  34589999999


Q ss_pred             CeEEEEEeccccc--c------------eeEeeec--cccccCCCCCcCeEEEeecC
Q 023246          227 VIMHVLRLQRRQT--L------------AYRERRY--NAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       227 ~~i~vwd~~~~~~--~------------~~~~~~~--~~~~~~~~~~~~~v~~~~~~  267 (285)
                      +.|++|+...++.  .            ..+.+.+  ++..+++...++.|.+++.+
T Consensus       271 g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          271 GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             SCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             CEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            9999999876421  1            1112333  34455566666667776654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-33  Score=227.16  Aligned_cols=227  Identities=12%  Similarity=0.166  Sum_probs=180.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .+|++|+.|++|++||+.+++              ....+ .+|...|.+++|+|++.+|+++ .|
T Consensus        65 ~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D  128 (319)
T 3frx_A           65 SHIVQDCTLTADG-AYALSASWDKTLRLWDVATGE--------------TYQRF-VGHKSDVMSVDIDKKASMIISGSRD  128 (319)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEECTTSCEEEEEETT
T ss_pred             cccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCC--------------eeEEE-ccCCCcEEEEEEcCCCCEEEEEeCC
Confidence            5689999999985 899999999999999999886              22333 7899999999999999999996 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC------CcEEEEecCCCeEEEEecCCCce
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN------DEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      ++|++||+..                 +.+..+.+|...  +.++.+ .|.      +..+++++.|+.|++||+++.+.
T Consensus       129 ~~i~vwd~~~-----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  188 (319)
T 3frx_A          129 KTIKVWTIKG-----------------QCLATLLGHNDW--VSQVRV-VPNEKADDDSVTIISAGNDKMVKAWNLNQFQI  188 (319)
T ss_dssp             SCEEEEETTS-----------------CEEEEECCCSSC--EEEEEE-CCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred             CeEEEEECCC-----------------CeEEEEeccCCc--EEEEEE-ccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence            9999999975                 367788888876  999997 774      44899999999999999999999


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ...+.+|...|.+++|+|++++|++++.|++|++||++.++. ..+. +...+..+.+ .++..++++++ +..+++|++
T Consensus       189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~-sp~~~~la~~~-~~~i~v~~~  265 (319)
T 3frx_A          189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAF-SPNRYWLAAAT-ATGIKVFSL  265 (319)
T ss_dssp             EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEE-CSSSSEEEEEE-TTEEEEEEE
T ss_pred             heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEE-cCCCCEEEEEc-CCCcEEEEe
Confidence            999999999999999999999999999999999999987763 3333 3344555543 44555555555 556999998


Q ss_pred             cccccce------------------eEeeeccccccCCCCCcCeEEEeecCC
Q 023246          235 QRRQTLA------------------YRERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       235 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      .....+.                  .+.++|++..+.++..++.|.+++...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             CcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            7653322                  235566666777666677777766543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=226.96  Aligned_cols=238  Identities=16%  Similarity=0.257  Sum_probs=181.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|.+++|+|++ .+|++|+.|++++||++..+...            +.. .+.+|...|.+++|+|++++|+++ .|
T Consensus        61 ~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~~~~------------~~~-~~~~h~~~v~~v~~sp~~~~l~s~s~D  126 (345)
T 3fm0_A           61 QRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFE------------CVT-TLEGHENEVKSVAWAPSGNLLATCSRD  126 (345)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC-EE------------EEE-EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCcEEEEEccCCCeE------------EEE-EccCCCCCceEEEEeCCCCEEEEEECC
Confidence            4679999999985 89999999999999999866421            222 237899999999999999999996 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc--eEEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LVRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~  159 (285)
                      ++|++||+....             ....+..+..|...  |.+++| +|++++|++++.|+.|++||.++++  +...+
T Consensus       127 ~~v~iwd~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~  190 (345)
T 3fm0_A          127 KSVWVWEVDEED-------------EYECVSVLNSHTQD--VKHVVW-HPSQELLASASYDDTVKLYREEEDDWVCCATL  190 (345)
T ss_dssp             SCEEEEEECTTS-------------CEEEEEEECCCCSC--EEEEEE-CSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEECCCCC-------------CeEEEEEecCcCCC--eEEEEE-CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence            999999997651             11235567788866  999997 9999999999999999999998775  45788


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CC---------------CCCC-CcccceeeccccCCCceEEE
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FP---------------PLPD-NAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~  222 (285)
                      .+|...|.+++|+|++++|++++.|++|++|+..... ..               .+.+ |...+..+.+ .+....+++
T Consensus       191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s  269 (345)
T 3fm0_A          191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW-CQLTGALAT  269 (345)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE-CTTTCCEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE-ecCCCEEEE
Confidence            8999999999999999999999999999999963221 11               1112 4445555544 445668999


Q ss_pred             eCCCCeEEEEEeccccc-------------------ceeEeeecccc-ccCCCCCcCeEEEeecCCCCC
Q 023246          223 LTPDVIMHVLRLQRRQT-------------------LAYRERRYNAA-DFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~~~-------------------~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      ++.|+.|++|+......                   +..+.+.|+.. .+++...++.|.+++...+..
T Consensus       270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            99999999999865321                   12234556553 566777778888887766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=226.41  Aligned_cols=209  Identities=16%  Similarity=0.239  Sum_probs=162.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccccccc-CCCCCcceEEEEEecCCCEEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      +..+|++++|+|+   +||+|+.|++|++||+..+...            ....+ ..+|...|.+++|+|++++|+++ 
T Consensus        13 h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X           13 YKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE------------EEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE------------EEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            3578999999984   9999999999999999865310            11222 13499999999999999999996 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC----Cce
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKL  155 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----~~~  155 (285)
                      .|++|++|++.....         .....+.+..+.+|...  |.+++| +|++++|++|+.|+.|++||++.    .++
T Consensus        78 ~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~h~~~--V~~v~~-sp~g~~las~s~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           78 FDSTVSIWAKEESAD---------RTFEMDLLAIIEGHENE--VKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             TTSCEEEEEC----------------CCCEEEEEEC----C--EEEEEE-CTTSCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred             CCCcEEEEEcccCcC---------ccccceeEEEEcCCCCc--EEEEEE-CCCCCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence            499999999854310         00011355678888876  999997 99999999999999999999943    246


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC---CCCCCCCCcccceeeccccCC-CceEEEeCCCCeEEE
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT---DFPPLPDNAEKIMKANKQGRE-DHSRITLTPDVIMHV  231 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d~~i~v  231 (285)
                      +..+.+|...|.+++|+|++.+|++++.|++|++|+....   .+..+.+|...+..+.+.... ...+++++.|++|++
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i  225 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV  225 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred             EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence            7788899999999999999999999999999999998654   345677888888777664432 457899999999999


Q ss_pred             EEeccc
Q 023246          232 LRLQRR  237 (285)
Q Consensus       232 wd~~~~  237 (285)
                      ||+...
T Consensus       226 w~~~~~  231 (330)
T 2hes_X          226 WKYMGD  231 (330)
T ss_dssp             EEEEEE
T ss_pred             EEecCC
Confidence            998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-33  Score=234.12  Aligned_cols=207  Identities=14%  Similarity=0.139  Sum_probs=165.8

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~-d   81 (285)
                      .+|+|++|+|.++.+||+|+.||+|+|||+.+++..             ......+|.+.|++++|+| ++.+|++++ |
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------TFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            469999999977789999999999999999877521             1112268999999999998 678888865 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++|++||+.+.                 ....+. .+.....+.+++| ++++++|++|+.||.|++||++ ++.+..+.
T Consensus       187 ~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~  247 (435)
T 4e54_B          187 GTTRLQDFKGN-----------------ILRVFASSDTINIWFCSLDV-SASSRMVVTGDNVGNVILLNMD-GKELWNLR  247 (435)
T ss_dssp             SCEEEEETTSC-----------------EEEEEECCSSCSCCCCCEEE-ETTTTEEEEECSSSBEEEEESS-SCBCCCSB
T ss_pred             CEEEEeeccCC-----------------ceeEEeccCCCCccEEEEEE-CCCCCEEEEEeCCCcEeeeccC-cceeEEEe
Confidence            99999999765                 333333 3333334788997 9999999999999999999997 56777888


Q ss_pred             cccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCCC----CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          161 GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      +|...|.+++|+|++. +|++++.|++|++||++....    ....+|...+..+.+ .+++.++++++.|+.|++||+.
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF-SPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCB-CTTSSEEEEEESSSCEEEEESS
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeE-CCCCCeeEEEcCCCEEEEEECC
Confidence            9999999999999987 588999999999999976542    233456777766654 5567799999999999999998


Q ss_pred             ccccceeE
Q 023246          236 RRQTLAYR  243 (285)
Q Consensus       236 ~~~~~~~~  243 (285)
                      +...+..+
T Consensus       327 ~~~~~~~~  334 (435)
T 4e54_B          327 QWDCPLGL  334 (435)
T ss_dssp             SSSSEEEE
T ss_pred             CCccceEE
Confidence            87655443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-33  Score=229.41  Aligned_cols=202  Identities=17%  Similarity=0.290  Sum_probs=164.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .|++++|+|++ .+|++|+.|++|+|||+.+++              .... +.+|...|.+++|+|++++|+++ .|++
T Consensus       125 ~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~--------------~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~  188 (393)
T 1erj_A          125 YIRSVCFSPDG-KFLATGAEDRLIRIWDIENRK--------------IVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRT  188 (393)
T ss_dssp             BEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--------------EEEE-ECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             eEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------------EEEE-EccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence            38999999986 899999999999999998875              2222 27899999999999999999886 5999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE---
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM---  159 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~---  159 (285)
                      |++||+.++                +....+.. ...  +.+++| +| +++++++|+.|+.|++||+++++.+..+   
T Consensus       189 v~iwd~~~~----------------~~~~~~~~-~~~--v~~~~~-~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~  248 (393)
T 1erj_A          189 VRIWDLRTG----------------QCSLTLSI-EDG--VTTVAV-SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE  248 (393)
T ss_dssp             EEEEETTTT----------------EEEEEEEC-SSC--EEEEEE-CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred             EEEEECCCC----------------eeEEEEEc-CCC--cEEEEE-ECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc
Confidence            999999877                45555553 333  889997 77 8999999999999999999999888776   


Q ss_pred             ----ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-------------CCCCCCcccceeeccccCCCceEEE
Q 023246          160 ----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------------PPLPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       160 ----~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                          .+|...|.+++|+|++++|++++.|++|++||++....             ..+.+|...+..+.+ .+++.++++
T Consensus       249 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s  327 (393)
T 1erj_A          249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-TQNDEYILS  327 (393)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE-CGGGCEEEE
T ss_pred             ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE-CCCCCEEEE
Confidence                57899999999999999999999999999999875421             223456665655544 455678999


Q ss_pred             eCCCCeEEEEEecccccceeE
Q 023246          223 LTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ++.|+.|++||+.+++.+..+
T Consensus       328 gs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          328 GSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             EETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEE
Confidence            999999999999887665544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.5e-33  Score=225.31  Aligned_cols=232  Identities=14%  Similarity=0.168  Sum_probs=178.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +...|.+++|+|++ .+|++|+.|+.+++|++........      .   .....+..|...|.+++|+|++..|+++ .
T Consensus       105 ~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~~------~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B          105 PCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNENM------A---AKKKSVAMHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             SSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCCS------G---GGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEeccccccc------c---ccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence            34578999999985 8999999999999999875431100      0   1122225799999999999999988885 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      |++|++||+.++                +.+..+.+|...  |.++++ +|  ++++|++|+.||.|++||+++++++..
T Consensus       175 D~~v~lwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          175 DGTCALWDVESG----------------QLLQSFHGHGAD--VLCLDL-APSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             TSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCcEEEEeCCCC----------------eEEEEEcCCCCC--eEEEEE-EeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            999999999887                688899999876  888887 65  578999999999999999999999999


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      +.+|...|.+++|+|++.+|++++.|++|++||++.... ..+..  +...+..+ ...+++.++++++.|+.|++||+.
T Consensus       236 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV-DFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE-EECTTSSEEEEEETTSCEEEEETT
T ss_pred             ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE-EEeCCCCEEEEEECCCcEEEEECC
Confidence            999999999999999999999999999999999987642 22211  11222233 235567799999999999999998


Q ss_pred             ccccceeE----------eeeccccccCCCCCcCeEEE
Q 023246          236 RRQTLAYR----------ERRYNAADFESDEEEGETYL  263 (285)
Q Consensus       236 ~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~  263 (285)
                      +++.+..+          .++|++..+++.+.++.|.+
T Consensus       315 ~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v  352 (354)
T 2pbi_B          315 KGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV  352 (354)
T ss_dssp             TCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence            76554332          33444444444444444443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.2e-34  Score=229.24  Aligned_cols=235  Identities=16%  Similarity=0.179  Sum_probs=182.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~   79 (285)
                      +..+|++++|+|++ .+||+|+.|++|+|||+.+++.             .....+.+|...|.+++|++  ++++|+++
T Consensus        12 H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~-------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A           12 HEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQ-------------ILIADLRGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             --CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEE-------------EEEEEEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             ccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCc-------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEE
Confidence            35689999999985 8999999999999999987641             11122378999999999986  47888886


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCce-
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKL-  155 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~-  155 (285)
                       .|++|++||+.++.              ......+.+|...  |.+++| +|+  +.+|++|+.|+.|++||++.+.. 
T Consensus        78 s~D~~v~iWd~~~~~--------------~~~~~~~~~h~~~--V~~v~~-~p~~~g~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A           78 SYDRKVIIWREENGT--------------WEKSHEHAGHDSS--VNSVCW-APHDYGLILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             ETTSCEEEECCSSSC--------------CCEEEEECCCSSC--CCEEEE-CCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred             ECCCEEEEEECCCCc--------------ceEEEEccCCCCc--eEEEEE-CCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence             59999999997651              1244567788866  999997 887  78999999999999999987643 


Q ss_pred             --EEEEecccccceEeEEcCC-----------------CCeEEEEecCCcEEEEcCCCC----CCCCCCCCcccceeecc
Q 023246          156 --VRLMVGDRHVVNQLEPHPH-----------------IPMFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKANK  212 (285)
Q Consensus       156 --~~~~~~h~~~v~~~~~~p~-----------------~~~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~  212 (285)
                        ...+.+|...|.+++|+|+                 +++|++++.|++|++||++..    ....+.+|...+..+.+
T Consensus       141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~  220 (316)
T 3bg1_A          141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW  220 (316)
T ss_dssp             EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC
T ss_pred             ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe
Confidence              3445679999999999997                 468999999999999999754    23567788888887776


Q ss_pred             ccCC---CceEEEeCCCCeEEEEEecccc--------------cceeEeeeccccccCCCCCcCeEEEeecC
Q 023246          213 QGRE---DHSRITLTPDVIMHVLRLQRRQ--------------TLAYRERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       213 ~~~~---~~~~~~~s~d~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                      ....   ..++++++.|+.|++|++....              .+..+.++|++..++....++.|.+++..
T Consensus       221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            4432   3689999999999999987621              11223566777778777777888888754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-32  Score=219.72  Aligned_cols=206  Identities=17%  Similarity=0.289  Sum_probs=171.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.+++|+|++ .+|++|+.|+.|++||+.+++              +...+ .+|...|.+++|+|++++|+++ .|
T Consensus        65 ~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~--------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           65 KLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSGK--------------CLKTL-KGHSNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--------------EEEEE-ECCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCceEEEEEcCCC-CEEEEECCCCEEEEEECCCCc--------------EEEEE-cCCCCCEEEEEEcCCCCEEEEEeCC
Confidence            4679999999975 899999999999999999876              22333 6789999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe-
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-  160 (285)
                      +.|++||+.++                +.+..+..|...  |.+++| +|+++++++++.||.|++||+++++.+..+. 
T Consensus       129 ~~i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  189 (312)
T 4ery_A          129 ESVRIWDVKTG----------------KCLKTLPAHSDP--VSAVHF-NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID  189 (312)
T ss_dssp             SCEEEEETTTC----------------CEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CcEEEEECCCC----------------EEEEEecCCCCc--EEEEEE-cCCCCEEEEEeCCCcEEEEECCCCceeeEEec
Confidence            99999999887                677888888866  999997 9999999999999999999999999887764 


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCccccee--eccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMK--ANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      .+...+..++|+|++++|++++.|+.|++||++.++. ..+.+|......  ......++.++++++.|+.|++||+.++
T Consensus       190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            4567899999999999999999999999999987753 444445443322  2222345668999999999999999988


Q ss_pred             ccceeE
Q 023246          238 QTLAYR  243 (285)
Q Consensus       238 ~~~~~~  243 (285)
                      +.+..+
T Consensus       270 ~~~~~~  275 (312)
T 4ery_A          270 EIVQKL  275 (312)
T ss_dssp             CEEEEE
T ss_pred             hhhhhh
Confidence            766555

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-32  Score=222.43  Aligned_cols=239  Identities=14%  Similarity=0.207  Sum_probs=183.6

Q ss_pred             CccceeEEEE-----cCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246            2 NSIRLNAIVI-----DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL   76 (285)
Q Consensus         2 ~~~~v~~~~~-----s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l   76 (285)
                      +...|++++|     ++.++.+|++|+.|++|++||+...+.....       . .+...+.+|...|.+++|+|++.++
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~-------~-~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-------G-IPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS-------E-EEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc-------c-cccchhccCCCceEEEEECCCCCEE
Confidence            3568999999     7633589999999999999999865421000       0 1222337899999999999999999


Q ss_pred             EEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce
Q 023246           77 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        77 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      ++++ |++|++||+.++                +.+..+.+|...  |.+++| +|+++++++++.|+.|++||+. ++.
T Consensus        92 ~s~s~D~~v~lwd~~~~----------------~~~~~~~~h~~~--v~~v~~-sp~~~~l~s~~~d~~i~~wd~~-~~~  151 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTG----------------TTYKRFVGHQSE--VYSVAF-SPDNRQILSAGAEREIKLWNIL-GEC  151 (343)
T ss_dssp             EEEETTSEEEEEETTSS----------------CEEEEEECCCSC--EEEEEE-CSSTTEEEEEETTSCEEEEESS-SCE
T ss_pred             EEEcCCCcEEEEECCCC----------------cEEEEEcCCCCc--EEEEEE-CCCCCEEEEEcCCCEEEEEecc-CCc
Confidence            9864 999999999887                678889999977  999997 9999999999999999999998 444


Q ss_pred             EEEEe---cccccceEeEEcCCC----------CeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE
Q 023246          156 VRLMV---GDRHVVNQLEPHPHI----------PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       156 ~~~~~---~h~~~v~~~~~~p~~----------~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                      .....   .|...|.+++|+|++          .+|++++.|+.|++||........+.+|...+..+.+ .+++.++++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s  230 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI-SPNGKYIAT  230 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEE-CTTSSEEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEE-CCCCCEEEE
Confidence            44443   688899999999987          6899999999999999655444556677777766655 566779999


Q ss_pred             eCCCCeEEEEEecccc-c---------ceeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          223 LTPDVIMHVLRLQRRQ-T---------LAYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ++.|+.|++||+.... .         +..+.+.|+...++.+. ++.+.+++...+.
T Consensus       231 gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~  287 (343)
T 2xzm_R          231 GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQS  287 (343)
T ss_dssp             EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCC
T ss_pred             EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCC
Confidence            9999999999994322 1         22234555555554433 3457777766543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-32  Score=223.13  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=170.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .++++|+.|++|++||+.+++              ....+ .+|...|.+++|+|++++|+++ .|
T Consensus        76 ~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~--------------~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d  139 (343)
T 2xzm_R           76 NHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGT--------------TYKRF-VGHQSEVYSVAFSPDNRQILSAGAE  139 (343)
T ss_dssp             SSCEEEEEECSST-TEEEEEETTSEEEEEETTSSC--------------EEEEE-ECCCSCEEEEEECSSTTEEEEEETT
T ss_pred             CCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCc--------------EEEEE-cCCCCcEEEEEECCCCCEEEEEcCC
Confidence            4579999999975 899999999999999999876              22333 6899999999999999998885 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCC----------cEEEEecCCCeEEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPND----------EYVMSGSDCGHLFIW  148 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~----------~~l~~~~~dg~v~vw  148 (285)
                      ++|++||+...                 ....+.   .|...  +.+++| +|++          .++++++.|+.|++|
T Consensus       140 ~~i~~wd~~~~-----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  199 (343)
T 2xzm_R          140 REIKLWNILGE-----------------CKFSSAEKENHSDW--VSCVRY-SPIMKSANKVQPFAPYFASVGWDGRLKVW  199 (343)
T ss_dssp             SCEEEEESSSC-----------------EEEECCTTTSCSSC--EEEEEE-CCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred             CEEEEEeccCC-----------------ceeeeecccCCCce--eeeeee-ccccccccccCCCCCEEEEEcCCCEEEEE
Confidence            99999998743                 222222   45554  999997 8876          799999999999999


Q ss_pred             ecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-CCCCCCCCcccceeeccccCCCceEEEeCCCC
Q 023246          149 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       149 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      |. ..+....+.+|...|.+++|+|++++|++++.|+.|++||+... .......+...+..+.+ .++.. +++++.|+
T Consensus       200 d~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~-sp~~~-~la~~~d~  276 (343)
T 2xzm_R          200 NT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAF-NPKLQ-WVAVGTDQ  276 (343)
T ss_dssp             ET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEE-CSSSC-EEEEEESS
T ss_pred             cC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEE-CCCCC-EEEEECCC
Confidence            94 46778888999999999999999999999999999999999443 32222223334545544 34444 45566788


Q ss_pred             eEEEEEecccccce-----------------------eEeeeccccccCCCCCcCeEEEeecCC
Q 023246          228 IMHVLRLQRRQTLA-----------------------YRERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       228 ~i~vwd~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      .+++|++.+.+...                       .+.+.|++..++.+..++.|.+++++.
T Consensus       277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            99999987654332                       224455555565555666666665543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-32  Score=225.40  Aligned_cols=244  Identities=14%  Similarity=0.258  Sum_probs=183.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCc----ccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV----DTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ...|++++|+|++ .+||+|+ ++++++|++.+++....+......    ..+. ......+...|++++|+|++++|++
T Consensus        64 ~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           64 TSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN-TSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             SSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccccc-ccccCCCceeEEEEEECCCCCEEEE
Confidence            4679999999986 8999876 789999999988754332211100    0000 0001133446999999999999999


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      + .|++|++||+.++                +.+..+.+|...  |.+++| +|++++|++++.|+.|++||++++++..
T Consensus       141 ~~~d~~i~iwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~p~~~~l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          141 GAEDRLIRIWDIENR----------------KIVMILQGHEQD--IYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             EETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EcCCCeEEEEECCCC----------------cEEEEEccCCCC--EEEEEE-cCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence            6 5999999999887                677888899877  999997 9999999999999999999999998887


Q ss_pred             EEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCC-CCC-------CCCcccceeeccccCCCceEEEeCCCCe
Q 023246          158 LMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPL-------PDNAEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                      .+. +...+.+++|+| ++++|++++.|+.|++||++.+.. ..+       .+|...+..+.+ .+++.++++++.|+.
T Consensus       202 ~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          202 TLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE-CTTSSEEEEEETTSE
T ss_pred             EEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE-CCCCCEEEEEeCCCE
Confidence            776 567899999999 899999999999999999987653 222       456666766654 556778999999999


Q ss_pred             EEEEEeccccc----------------------ceeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          229 MHVLRLQRRQT----------------------LAYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       229 i~vwd~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      |++||++....                      +..+.+.++...+.+...++.|++++...+.
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence            99999875321                      1123455566667777778888888876553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-32  Score=222.77  Aligned_cols=253  Identities=12%  Similarity=0.122  Sum_probs=181.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +.+.|++|+|+|+++++||||+.|++|+|||+.+.+....          .+...+.+|...|.+++|+|++++|+++ .
T Consensus        37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~----------~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG----------IPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE----------EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc----------eeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            3578999999998778999999999999999987652111          1222337899999999999999999986 5


Q ss_pred             CCcEEEEEcCCCCCCC--------------------------CCCCCCccccCCC-CceEeecccCceeeeeEEEecCC-
Q 023246           81 DELVYLFEKNMGLGPS--------------------------PLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPN-  132 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~--------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-  132 (285)
                      |+.|++|+........                          ...+..++..... ....+.+|...  +..++| +++ 
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~--v~~~~~-~~~~  183 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW--VSCVRF-SPNS  183 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC--EEEEEE-CSCS
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc--ccceEE-ccCC
Confidence            9999999997654000                          0111111111111 11222345544  788886 654 


Q ss_pred             -CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeec
Q 023246          133 -DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN  211 (285)
Q Consensus       133 -~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  211 (285)
                       ..++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.|+.|++||++..+......+...+....
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  263 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC  263 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence             4678899999999999999999999999999999999999999999999999999999998776422222333444433


Q ss_pred             cccCCCceEEEeCCCCeEEEEEeccccccee-------------------EeeeccccccCCCCCcCeEEEeecCCC
Q 023246          212 KQGREDHSRITLTPDVIMHVLRLQRRQTLAY-------------------RERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      +  ..+..+++++.|+.|++||++....+..                   +.+++++..++.+..++.|++++...|
T Consensus       264 ~--~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          264 F--SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             E--CSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             c--CCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            2  2345677888899999999886543322                   345566666666667777777776655

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-32  Score=237.58  Aligned_cols=201  Identities=15%  Similarity=0.251  Sum_probs=166.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ...|++++|+|++ .+||+|+.|++|+|||+.+++.             .....+.+|.++|.+++|+|++++|+++. +
T Consensus        59 ~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~-------------~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~  124 (611)
T 1nr0_A           59 SHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH-------------ILKTTIPVFSGPVKDISWDSESKRIAAVGEG  124 (611)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC-------------CEEEEEECSSSCEEEEEECTTSCEEEEEECC
T ss_pred             CCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcc-------------eeeEeecccCCceEEEEECCCCCEEEEEECC
Confidence            4679999999986 8999999999999999976542             11222367899999999999999888853 3


Q ss_pred             ----CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceE
Q 023246           82 ----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        82 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~  156 (285)
                          +.|++||.  +                .....+.+|...  |.+++| +|++. .|++++.|++|++||..+++++
T Consensus       125 ~~~~~~v~~wd~--~----------------~~~~~l~gh~~~--v~~v~f-~p~~~~~l~s~s~D~~v~lwd~~~~~~~  183 (611)
T 1nr0_A          125 RERFGHVFLFDT--G----------------TSNGNLTGQARA--MNSVDF-KPSRPFRIISGSDDNTVAIFEGPPFKFK  183 (611)
T ss_dssp             SSCSEEEEETTT--C----------------CBCBCCCCCSSC--EEEEEE-CSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             CCceeEEEEeeC--C----------------CCcceecCCCCC--ceEEEE-CCCCCeEEEEEeCCCeEEEEECCCCeEe
Confidence                46888874  3                355677888876  999998 99886 6999999999999999999999


Q ss_pred             EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC-------CCCcccceeeccccCCCceEEEeCCCCe
Q 023246          157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-------PDNAEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                      ..+.+|...|.+++|+|++++|++++.|++|++||+..+.. ..+       .+|...+..+.+ .+++.++++++.|++
T Consensus       184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~-spdg~~l~s~s~D~~  262 (611)
T 1nr0_A          184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW-SPDGTKIASASADKT  262 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE-CTTSSEEEEEETTSE
T ss_pred             eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE-CCCCCEEEEEeCCCe
Confidence            99999999999999999999999999999999999876653 222       157777777765 556778999999999


Q ss_pred             EEEEEeccccc
Q 023246          229 MHVLRLQRRQT  239 (285)
Q Consensus       229 i~vwd~~~~~~  239 (285)
                      |++||+.+++.
T Consensus       263 v~lWd~~~~~~  273 (611)
T 1nr0_A          263 IKIWNVATLKV  273 (611)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEeCCCCce
Confidence            99999986543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.6e-32  Score=221.98  Aligned_cols=208  Identities=15%  Similarity=0.150  Sum_probs=168.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccccccccc-CCCCCcceEEEEEec-CCCEEEEe-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN-TSELLISY-   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~-~~~~l~s~-   79 (285)
                      ...|++++|+|++..+|++|+.||.|+|||+.+++.              ...+ ..+|...|.+++|+| ++++|+++ 
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--------------TSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC--------------EEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc--------------ceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            468999999998658999999999999999997762              1111 147999999999999 66888885 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC-ceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      .|+.|++||+...                 ....+..+.. ...|.+++| +|+++++++++.|+.|++||+ +++.+..
T Consensus       139 ~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  199 (383)
T 3ei3_B          139 IRGATTLRDFSGS-----------------VIQVFAKTDSWDYWYCCVDV-SVSRQMLATGDSTGRLLLLGL-DGHEIFK  199 (383)
T ss_dssp             TTTEEEEEETTSC-----------------EEEEEECCCCSSCCEEEEEE-ETTTTEEEEEETTSEEEEEET-TSCEEEE
T ss_pred             CCCEEEEEECCCC-----------------ceEEEeccCCCCCCeEEEEE-CCCCCEEEEECCCCCEEEEEC-CCCEEEE
Confidence            5999999999854                 4555554431 123999997 999999999999999999999 4888999


Q ss_pred             EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCC----CCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT----DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      +..|...|.+++|+|+++ +|++++.|+.|++||++..    .+.....|...+..+.+...++.++++++.|+.|++||
T Consensus       200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence            999999999999999999 8999999999999999763    33222356677777766443677899999999999999


Q ss_pred             ecccccceeE
Q 023246          234 LQRRQTLAYR  243 (285)
Q Consensus       234 ~~~~~~~~~~  243 (285)
                      +++.+.+..+
T Consensus       280 ~~~~~~~~~~  289 (383)
T 3ei3_B          280 SYDWSKPDQI  289 (383)
T ss_dssp             TTBTTSCSEE
T ss_pred             CCCCcccccc
Confidence            9887665544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4e-32  Score=236.20  Aligned_cols=197  Identities=16%  Similarity=0.262  Sum_probs=153.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|+++.+|++|+.|++|++||..+++              +...+ .+|...|++++|+|++++|+++ .|
T Consensus       147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------------~~~~l-~~H~~~V~~v~fspdg~~las~s~D  211 (611)
T 1nr0_A          147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------------FKSTF-GEHTKFVHSVRYNPDGSLFASTGGD  211 (611)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--------------Eeeee-ccccCceEEEEECCCCCEEEEEECC
Confidence            46799999999875679999999999999987664              22333 7899999999999999999996 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-------cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      ++|++||+.++                +....+.       +|...  |.+++| +|++++|++++.|++|++||+++++
T Consensus       212 ~~i~lwd~~~g----------------~~~~~~~~~~~~~~~h~~~--V~~v~~-spdg~~l~s~s~D~~v~lWd~~~~~  272 (611)
T 1nr0_A          212 GTIVLYNGVDG----------------TKTGVFEDDSLKNVAHSGS--VFGLTW-SPDGTKIASASADKTIKIWNVATLK  272 (611)
T ss_dssp             SCEEEEETTTC----------------CEEEECBCTTSSSCSSSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CcEEEEECCCC----------------cEeeeeccccccccccCCC--EEEEEE-CCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            99999999876                4555553       67766  999997 9999999999999999999998876


Q ss_pred             eEE-------------------------------------------EEecccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246          155 LVR-------------------------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       155 ~~~-------------------------------------------~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  191 (285)
                      ++.                                           .+.+|...|.+++|+|++++|++++.|++|++||
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd  352 (611)
T 1nr0_A          273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD  352 (611)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            543                                           3347889999999999999999999999999999


Q ss_pred             CCCCCCCC-C-CCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          192 PMPTDFPP-L-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       192 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      +.++.... + ..|...+..+.+.  .+..+++++.|+.+++|++.
T Consensus       353 ~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          353 ISTGISNRVFPDVHATMITGIKTT--SKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             TTTCCEEECSSCSCSSCEEEEEEC--TTSCEEEEETTTEEEEECSS
T ss_pred             CCCCceeeecccCCcceEEEEEEC--CCCcEEEEEcCCceEEeecC
Confidence            98765322 1 2344444433322  22345555555555555543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-33  Score=229.55  Aligned_cols=232  Identities=12%  Similarity=0.126  Sum_probs=172.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+|++|+.|+.|+|||+.++...            ....+ .+|...|.+++|+|++++|+++ .|
T Consensus        11 ~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~------------~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C           11 PKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWK------------HARTF-SDHDKIVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             SSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEE------------ECCCB-CCCSSCEEEEEECTTTCCEEEEETT
T ss_pred             CCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceE------------EEEEE-ecCCceEEEEEEeCCCCEEEEEeCC
Confidence            5689999999975 89999999999999999976210            22222 6899999999999999999886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc---eEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~  158 (285)
                      ++|++||+..+.             .......+..|...  |.+++| +|++++|++++.|+.|++||+++++   ....
T Consensus        77 ~~v~vwd~~~~~-------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           77 RNAYVYEKRPDG-------------TWKQTLVLLRLNRA--ATFVRW-SPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             SSEEEC-------------------CCCCEEECCCCSSC--EEEEEC-CTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             CeEEEEEcCCCC-------------ceeeeeEecccCCc--eEEEEE-CCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence            999999998761             01245666778766  999997 9999999999999999999999877   4677


Q ss_pred             Eec-ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-------------------CCCCCCCcccceeeccccCCCc
Q 023246          159 MVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------------------FPPLPDNAEKIMKANKQGREDH  218 (285)
Q Consensus       159 ~~~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~  218 (285)
                      +.. |...|.+++|+|++++|++++.|+.|++||++...                   +..+ .|...+..+.+ .+++.
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~-sp~~~  218 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGF-SPSGN  218 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEE-CTTSS
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEE-CCCCC
Confidence            777 99999999999999999999999999999985322                   1223 56666666654 55677


Q ss_pred             eEEEeCCCCeEEEEEeccccc----cee----------EeeeccccccCCCCCcCeEEEeecC
Q 023246          219 SRITLTPDVIMHVLRLQRRQT----LAY----------RERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                      ++++++.|+.|++||+.+.+.    +..          +.+.+++..++...+++ +.++...
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~  280 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQGN  280 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECCC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEeC
Confidence            899999999999999998765    222          23455555555555443 3344443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.5e-32  Score=221.90  Aligned_cols=208  Identities=13%  Similarity=0.205  Sum_probs=169.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~   80 (285)
                      .+.|.++.|+|+++.+|++|+.|++|++||+.+++....+          ......+|...|.+++|++ ++.+|+++ .
T Consensus       157 ~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF----------GSEFPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE----------CCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe----------ecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence            4568889999976678999999999999999988643211          1112257899999999987 77888886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |++|++||++...               +.+..+.+|...  |.+++| +|++++|++|+.||+|++||+++++.+..+.
T Consensus       227 D~~v~~wd~~~~~---------------~~~~~~~~h~~~--v~~v~~-~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          227 DTTVRLWDLRITS---------------RAVRTYHGHEGD--INSVKF-FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             TSCEEEEETTTTC---------------CCCEEECCCSSC--CCEEEE-CTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CCeEEEEECCCCC---------------cceEEECCcCCC--eEEEEE-ecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            9999999997431               567888899877  999997 9999999999999999999999999988876


Q ss_pred             ccc-------ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC----CCCcccceeeccccCCCceEEEeCCCCe
Q 023246          161 GDR-------HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL----PDNAEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       161 ~h~-------~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                      .+.       ..|.+++|+|++++|++|+.||.|++||+..++. ..+    .+|...+.++.+ .+++.++++++.|+.
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL-SSDGSALCTGSWDKN  367 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE-CSSSSEEEEECTTSC
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE-CCCCCEEEEeeCCCC
Confidence            543       2489999999999999999999999999876652 222    457777766654 567779999999999


Q ss_pred             EEEEEeccccc
Q 023246          229 MHVLRLQRRQT  239 (285)
Q Consensus       229 i~vwd~~~~~~  239 (285)
                      |++|++...+.
T Consensus       368 i~iW~~~~~~~  378 (380)
T 3iz6_a          368 LKIWAFSGHRK  378 (380)
T ss_dssp             EEEEECCSSSS
T ss_pred             EEEEecCCCcc
Confidence            99999887643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.7e-32  Score=237.76  Aligned_cols=237  Identities=15%  Similarity=0.190  Sum_probs=186.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +...|++++|+|++..+|++|+.|++|++|++.+.....         . .....+.+|...|.+++|+|++++|++++ 
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---------~-~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---------G-VAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---------C-EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---------c-cccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            467899999999877899999999999999998653110         0 11122378999999999999999999965 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE-
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-  159 (285)
                      |++|++||+.++                .....+.+|...  |.+++| +|++++|++++.|++|++||+......... 
T Consensus       451 Dg~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  511 (694)
T 3dm0_A          451 DGELRLWDLAAG----------------VSTRRFVGHTKD--VLSVAF-SLDNRQIVSASRDRTIKLWNTLGECKYTISE  511 (694)
T ss_dssp             TSEEEEEETTTT----------------EEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             CCcEEEEECCCC----------------cceeEEeCCCCC--EEEEEE-eCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence            999999999887                677889999977  999997 999999999999999999998744333222 


Q ss_pred             --ecccccceEeEEcCCC--CeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 --VGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 --~~h~~~v~~~~~~p~~--~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                        .+|...|.+++|+|++  ..+++++.|++|++||++..++ ..+.+|...+..+.+ .+++.++++++.|+.|++||+
T Consensus       512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~-spdg~~l~sg~~Dg~i~iwd~  590 (694)
T 3dm0_A          512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV-SPDGSLCASGGKDGVVLLWDL  590 (694)
T ss_dssp             STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSBCEEEET
T ss_pred             CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE-eCCCCEEEEEeCCCeEEEEEC
Confidence              3688899999999987  5799999999999999987764 557778877766655 556779999999999999999


Q ss_pred             cccccceeE---------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          235 QRRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       235 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ++++.+..+         .++++...+.... ++.+.++++..+
T Consensus       591 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~  633 (694)
T 3dm0_A          591 AEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK  633 (694)
T ss_dssp             TTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred             CCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence            887654332         3445544444333 334777776654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.9e-31  Score=210.11  Aligned_cols=204  Identities=12%  Similarity=0.158  Sum_probs=161.3

Q ss_pred             ccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEe
Q 023246            3 SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~   79 (285)
                      ..+|++++|+|+ .+.+|++|+.|++|+|||+.+++..            .. ....+|...|.+++|+|+  +.+|+++
T Consensus        53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~------------~~-~~~~~h~~~v~~v~~~p~~~g~~l~s~  119 (297)
T 2pm7_B           53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS------------QI-AVHAVHSASVNSVQWAPHEYGPMLLVA  119 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC------------CC-EEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE------------EE-EEeecCCCceeEEEeCcCCCCcEEEEE
Confidence            568999999874 2489999999999999999876421            11 122678999999999997  7888885


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-------------CcEEEEecCCCeE
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-------------DEYVMSGSDCGHL  145 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~l~~~~~dg~v  145 (285)
                       .|++|++||+....              ......+.+|...  |.+++| +|+             +++|++|+.|+.|
T Consensus       120 s~d~~v~~wd~~~~~--------------~~~~~~~~~h~~~--v~~~~~-~p~~~~~~~~~~~~~~~~~l~sgs~D~~v  182 (297)
T 2pm7_B          120 SSDGKVSVVEFKENG--------------TTSPIIIDAHAIG--VNSASW-APATIEEDGEHNGTKESRKFVTGGADNLV  182 (297)
T ss_dssp             ETTSEEEEEEBCSSS--------------CBCCEEEECCSSC--EEEEEE-CCCC------------CCEEEEEETTSCE
T ss_pred             ECCCcEEEEEecCCC--------------ceeeeeeecccCc--cceEee-cCCcccccccCCCCCCcceEEEEcCCCcE
Confidence             59999999997651              0124567788866  999997 886             5799999999999


Q ss_pred             EEEecCCCc----eEEEEecccccceEeEEcCCC---CeEEEEecCCcEEEEcCCCCC------CCCCCCCcccceeecc
Q 023246          146 FIWKKKGGK----LVRLMVGDRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMPTD------FPPLPDNAEKIMKANK  212 (285)
Q Consensus       146 ~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~---~~l~t~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~  212 (285)
                      ++||+++++    ....+.+|...|.+++|+|++   .+|++++.|++|++||++...      ......+...+..+.+
T Consensus       183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~  262 (297)
T 2pm7_B          183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW  262 (297)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred             EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence            999998766    567888999999999999985   789999999999999987642      1111345555655554


Q ss_pred             ccCCCceEEEeCCCCeEEEEEeccc
Q 023246          213 QGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       213 ~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                       .+++.++++++.|+.|++|+....
T Consensus       263 -s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          263 -SLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             -CSSSCCEEEEETTSCEEEEEECTT
T ss_pred             -CCCCCEEEEEcCCCcEEEEEECCC
Confidence             556778999999999999997643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-31  Score=217.14  Aligned_cols=233  Identities=14%  Similarity=0.156  Sum_probs=186.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~   79 (285)
                      +..+|++++|+|++ .+|++|+.||.|+|||+.....             .....+.+|...|++++|+++  +++|+++
T Consensus        10 h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A           10 HNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             CCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             CcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcc-------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence            46789999999985 8999999999999999984321             122223789999999999977  8888886


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCC--CceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCc
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                       .|+.|++||+..+                +  ....+..|...  |.+++| +|+  ++++++++.|+.|++||++++.
T Consensus        76 ~~dg~v~iwd~~~~----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           76 SYDGKVLIWKEENG----------------RWSQIAVHAVHSAS--VNSVQW-APHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             ETTSCEEEEEEETT----------------EEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             ccCCEEEEEEcCCC----------------ceeEeeeecCCCcc--eEEEEe-CCCCCCCEEEEecCCCcEEEEecCCCC
Confidence             5999999999876                3  55666777766  999997 998  9999999999999999998773


Q ss_pred             --eEEEEecccccceEeEEcC-------------CCCeEEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeecccc
Q 023246          155 --LVRLMVGDRHVVNQLEPHP-------------HIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQG  214 (285)
Q Consensus       155 --~~~~~~~h~~~v~~~~~~p-------------~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~  214 (285)
                        ....+..|...|.+++|+|             ++.+|++++.|+.|++||++....     ..+.+|...+..+.+..
T Consensus       137 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          137 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC
Confidence              4556778999999999999             689999999999999999976542     35666777777776643


Q ss_pred             CC--CceEEEeCCCCeEEEEEeccccc---------------ceeEeeeccccccCCCCCcCeEEEeecC
Q 023246          215 RE--DHSRITLTPDVIMHVLRLQRRQT---------------LAYRERRYNAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       215 ~~--~~~~~~~s~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~  267 (285)
                      ..  ..++++++.|+.|++||++....               +..+.+.+++..+.....++.++++++.
T Consensus       217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            32  78999999999999999987521               1223566677777777677788888766

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.5e-31  Score=212.27  Aligned_cols=238  Identities=14%  Similarity=0.113  Sum_probs=186.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+|++++ ||.|++||+.+++....      +   . ......|...|.+++|+|++++|+++ .|
T Consensus        51 ~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~------~---~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  118 (337)
T 1gxr_A           51 GEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSP------V---S-QLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             SSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSC------S---E-EEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceee------e---e-cccccCCCCcEEEEEEcCCCCEEEEEcCC
Confidence            5689999999975 8999998 99999999987652211      0   0 01113688999999999999988885 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||+..+.              ......+..|...  +.+++| +|+++++++++.||.|++||+++++.+..+..
T Consensus       119 ~~i~~~d~~~~~--------------~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~  181 (337)
T 1gxr_A          119 STLSIWDLAAPT--------------PRIKAELTSSAPA--CYALAI-SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             SEEEEEECCCC----------------EEEEEEECSSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CcEEEEECCCCC--------------cceeeecccCCCc--eEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence            999999998761              0145566777765  999997 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      |...|.+++|+|++++|++++.|+.|++||++.++......+...+..+.+ .+++.++++++.++.|++||+...+...
T Consensus       182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~~i~~~~~~~~~~~~  260 (337)
T 1gxr_A          182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY-CPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEE-CCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence            999999999999999999999999999999987764332234445544443 4566788999999999999998764332


Q ss_pred             ---------eEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          242 ---------YRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       242 ---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                               .+.+.+++..+.....++.+.+++...+.
T Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence                     23455666667766777788888876654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-31  Score=222.87  Aligned_cols=205  Identities=11%  Similarity=0.132  Sum_probs=163.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +...|++++|+|++ .+|++|+.|++|++||+.+++              ....+ .+|...|.+++|+|++++|+++ .
T Consensus       138 h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~  201 (420)
T 3vl1_A          138 HVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGS--------------NPRTL-IGHRATVTDIAIIDRGRNVLSASL  201 (420)
T ss_dssp             SSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--------------CCEEE-ECCSSCEEEEEEETTTTEEEEEET
T ss_pred             ccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc--------------CceEE-cCCCCcEEEEEEcCCCCEEEEEcC
Confidence            35689999999975 899999999999999999876              23333 6899999999999999998886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc---Cc-------------------eeeeeEEEecCCCcEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NS-------------------QTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------~~i~~~~~~~~~~~~l~~  138 (285)
                      |+.|++||+.++                +.+..+..+.   ..                   ..+.+++| +|+++++++
T Consensus       202 d~~v~iwd~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~  264 (420)
T 3vl1_A          202 DGTIRLWECGTG----------------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF-GTYGKYVIA  264 (420)
T ss_dssp             TSCEEEEETTTT----------------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS-SCTTEEEEE
T ss_pred             CCcEEEeECCCC----------------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE-cCCCCEEEE
Confidence            999999999877                4555554322   11                   12555665 899999999


Q ss_pred             ecCCCeEEEEecCCCceEEEEe-cccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeecccc
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~  214 (285)
                      ++.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.||.|++||++.+.  +..+..+....+...+ .
T Consensus       265 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~  343 (420)
T 3vl1_A          265 GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-F  343 (420)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-E
T ss_pred             EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-e
Confidence            9999999999999998877775 5788999999999999 89999999999999998764  3445543444444333 3


Q ss_pred             CCCceEEEeCCCCeEEEEEecccccc
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      .++.++++++.|+.|++|++......
T Consensus       344 ~~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          344 AAGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             ETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CCCCEEEEecCCccEEEEeccCCCCC
Confidence            45678999999999999999875433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-31  Score=217.13  Aligned_cols=237  Identities=12%  Similarity=0.158  Sum_probs=184.9

Q ss_pred             CccceeEEEEcCC---CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CC
Q 023246            2 NSIRLNAIVIDPR---NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SE   74 (285)
Q Consensus         2 ~~~~v~~~~~s~~---~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~   74 (285)
                      +..+|++++|+|+   +..++++++.++.|++||+.+++....         +. ......|...|++++|+|+    +.
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~---------~~-~~~~~~~~~~v~~~~~~~~~~~~~~   86 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL---------LQ-SYVDADADENFYTCAWTYDSNTSHP   86 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE---------EE-EEECSCTTCCEEEEEEEECTTTCCE
T ss_pred             CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe---------ee-eccccCCCCcEEEEEeccCCCCCCC
Confidence            3578999999984   446777777788999999997753211         11 1111347789999999999    56


Q ss_pred             EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCC
Q 023246           75 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        75 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~  152 (285)
                      +|+++ .|+.|++||+.++                +.+..+.+|...  |.+++| +| +++++++++.||.|++||+++
T Consensus        87 ~l~~~~~dg~i~v~d~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITM----------------QCIKHYVGHGNA--INELKF-HPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             EEEEEETTCEEEEECTTTC----------------CEEEEEESCCSC--EEEEEE-CSSCTTEEEEEETTSCEEEEETTT
T ss_pred             EEEEecCCCEEEEEEchhc----------------eEeeeecCCCCc--EEEEEE-CCCCCCEEEEEeCCCeEEEEEeec
Confidence            78885 5999999999887                678888888876  999997 88 899999999999999999999


Q ss_pred             CceEEEE---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CC----------------------------C
Q 023246          153 GKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PP----------------------------L  200 (285)
Q Consensus       153 ~~~~~~~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~----------------------------~  200 (285)
                      ++.+..+   ..|...|.+++|+|++++|++++.|+.|++||++.+.. ..                            .
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9999888   68999999999999999999999999999999976531 11                            1


Q ss_pred             CCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc--------------cee----------Eeeecc--ccccCC
Q 023246          201 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT--------------LAY----------RERRYN--AADFES  254 (285)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~--------------~~~----------~~~~~~--~~~~~~  254 (285)
                      ..|...+..+.+.   +.++++++.|+.|++||+.....              +..          +.+.++  +..++.
T Consensus       228 ~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          228 DIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             cCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence            1255556555553   45899999999999999987643              111          233444  666776


Q ss_pred             CCCcCeEEEeecCCCC
Q 023246          255 DEEEGETYLLGFSDSD  270 (285)
Q Consensus       255 ~~~~~~v~~~~~~~~~  270 (285)
                      ...++.|++++...++
T Consensus       305 ~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          305 GNQVGKLYVWDLEVED  320 (366)
T ss_dssp             ECTTSCEEEEECCSSS
T ss_pred             EecCCcEEEEECCCCC
Confidence            7777888888887654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-31  Score=234.30  Aligned_cols=225  Identities=17%  Similarity=0.224  Sum_probs=174.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .+|++|+.||+|+|||+.+++              ....+ .+|...|.+++|+|++++|+++ .|
T Consensus       430 ~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~--------------~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D  493 (694)
T 3dm0_A          430 SHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGV--------------STRRF-VGHTKDVLSVAFSLDNRQIVSASRD  493 (694)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc--------------ceeEE-eCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            4679999999985 899999999999999999876              23333 6899999999999999998886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEe----ecccCceeeeeEEEecCCC--cEEEEecCCCeEEEEecCCCce
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPND--EYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      ++|++||....                 ....+    .+|...  |.+++| +|++  ..+++++.|+.|++||++++++
T Consensus       494 ~~i~iwd~~~~-----------------~~~~~~~~~~~h~~~--v~~~~~-~~~~~~~~l~s~s~d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          494 RTIKLWNTLGE-----------------CKYTISEGGEGHRDW--VSCVRF-SPNTLQPTIVSASWDKTVKVWNLSNCKL  553 (694)
T ss_dssp             SCEEEECTTSC-----------------EEEEECSSTTSCSSC--EEEEEE-CSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             CEEEEEECCCC-----------------cceeeccCCCCCCCc--EEEEEE-eCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence            99999998643                 22222    346655  999997 8876  6899999999999999999999


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ...+.+|.+.|.+++|+|++++|++++.|++|++||++.++. ..+. +...+..+.+ .++. .+++++.++.|++||+
T Consensus       554 ~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~-sp~~-~~l~~~~~~~i~iwd~  630 (694)
T 3dm0_A          554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCF-SPNR-YWLCAATEHGIKIWDL  630 (694)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEE-CSSS-SEEEEEETTEEEEEET
T ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEE-cCCC-cEEEEEcCCCEEEEEC
Confidence            999999999999999999999999999999999999987763 3332 3334444433 3344 4555566778999999


Q ss_pred             ccccccee-----------------------------EeeeccccccCCCCCcCeEEEeec
Q 023246          235 QRRQTLAY-----------------------------RERRYNAADFESDEEEGETYLLGF  266 (285)
Q Consensus       235 ~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~v~~~~~  266 (285)
                      ++...+..                             +.+++++..+.++..+|.|.+++.
T Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          631 ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             TTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            87654432                             234555566666666666666654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-30  Score=216.75  Aligned_cols=227  Identities=16%  Similarity=0.115  Sum_probs=180.7

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYL   86 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~i   86 (285)
                      ...|+|++ .+|++|+.||.|++||+.+++              .. ..+.+|...|++++|+|++++|+++ .|+.|++
T Consensus       102 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--------------~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A          102 VDTAKLQM-RRFILGTTEGDIKVLDSNFNL--------------QR-EIDQAHVSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             EEEECSSS-CEEEEEETTSCEEEECTTSCE--------------EE-EETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEecCC-CEEEEEECCCCEEEEeCCCcc--------------ee-eecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            34678875 899999999999999998775              22 2336899999999999999999886 5999999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc----
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD----  162 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h----  162 (285)
                      ||+.++                +.+..+.+|...  |.+++| +|++++|++++.|+.|++||+++++.+..+..|    
T Consensus       166 wd~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~  226 (420)
T 3vl1_A          166 WSVKDG----------------SNPRTLIGHRAT--VTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH  226 (420)
T ss_dssp             EETTTC----------------CCCEEEECCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTT
T ss_pred             EeCCCC----------------cCceEEcCCCCc--EEEEEE-cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCC
Confidence            999887                678889999877  999997 999999999999999999999999999888753    


Q ss_pred             --------------------cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC-CCCcccceeeccccCCCceE
Q 023246          163 --------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIMKANKQGREDHSR  220 (285)
Q Consensus       163 --------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~  220 (285)
                                          ...+.+++|+|++++|++++.||.|++||++.+.. ..+ ..|...+..+.+......++
T Consensus       227 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             CCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred             CCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEE
Confidence                                35566677889999999999999999999987763 333 34566666666543333389


Q ss_pred             EEeCCCCeEEEEEeccccc-ceeEe----------eeccccccCCCCCcCeEEEeecCCC
Q 023246          221 ITLTPDVIMHVLRLQRRQT-LAYRE----------RRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ++++.||.|++||+++.+. +..+.          ..++...+.....++.+.++++.+.
T Consensus       307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence            9999999999999988644 33322          2223445666667778888887764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-30  Score=208.31  Aligned_cols=206  Identities=12%  Similarity=0.098  Sum_probs=175.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.+++|+|++ .+|++++.|+.|++||+.+++.             ........|...|.+++|+|++++|+++ .|
T Consensus        97 ~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           97 DNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTP-------------RIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             TSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCc-------------ceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence            4679999999975 8999999999999999987652             1222236788899999999999988886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||+.++                +....+..|...  +.+++| +|+++++++++.||.|++||+++++.+..+. 
T Consensus       163 g~v~~~d~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-  222 (337)
T 1gxr_A          163 GNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-  222 (337)
T ss_dssp             SCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred             CcEEEEeCCCC----------------ceeeeeecccCc--eEEEEE-CCCCCEEEEEecCCcEEEEECCCCceEeeec-
Confidence            99999999887                677888888866  999997 9999999999999999999999998887765 


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      |...+.+++|+|+++++++++.|+.|++||++......+..|...+..+.+ .+++.++++++.|+.|++||+..++.+.
T Consensus       223 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF-AYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEE-CCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence            678899999999999999999999999999988876667777777766655 4566789999999999999998876664


Q ss_pred             eE
Q 023246          242 YR  243 (285)
Q Consensus       242 ~~  243 (285)
                      ..
T Consensus       302 ~~  303 (337)
T 1gxr_A          302 QS  303 (337)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-31  Score=228.62  Aligned_cols=192  Identities=21%  Similarity=0.370  Sum_probs=167.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.+++|+|++ .+|++++.|+.|++||.. ++              ....+ .+|...|++++|+|++++|+++ .|
T Consensus       385 ~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~--------------~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          385 SSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--------------LLQTL-TGHSSSVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             SSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CC--------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CC--------------EEEEe-cCCCCCeEEEEECCCCCEEEEEcCC
Confidence            5679999999986 899999999999999964 33              22222 6799999999999999999985 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      ++|++||...                 +.+..+.+|...  |.+++| +|++++|++++.|+.|++||. +++++..+.+
T Consensus       448 ~~v~~w~~~~-----------------~~~~~~~~~~~~--v~~~~~-spd~~~las~~~d~~i~iw~~-~~~~~~~~~~  506 (577)
T 2ymu_A          448 KTVKLWNRNG-----------------QLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  506 (577)
T ss_dssp             SEEEEEETTS-----------------CEEEEEECCSSC--EEEEEE-CTTSCEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             CEEEEEECCC-----------------CEEEEEcCCCCC--EEEEEE-cCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC
Confidence            9999999754                 477888889877  999997 999999999999999999996 5889999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      |...|++++|+|++++|++++.|+.|++||.....+..+.+|...+..+.+ .++++++++++.|++|++||
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~f-s~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF-SPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEE-CTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEE-cCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999999999876666778888888877765 56778899999999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.9e-30  Score=214.78  Aligned_cols=210  Identities=13%  Similarity=0.151  Sum_probs=166.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-   79 (285)
                      +..+|++++|+|+++.+|++|+.||+|+|||+.++......  ..     ... .+.+|...|.+++|+|++ .+|+++ 
T Consensus        80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~--~~-----~~~-~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A           80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--RE-----PVI-TLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB--CS-----CSE-EEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc--CC-----ceE-EecCCCCeEEEEEECcCCCCEEEEEc
Confidence            35689999999944589999999999999999987532110  01     122 226899999999999998 588885 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe--ecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      .|+.|++||+.++                +.+..+  ..|...  |.+++| +|++++|++++.||.|++||+++++.+.
T Consensus       152 ~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          152 CDNVILVWDVGTG----------------AAVLTLGPDVHPDT--IYSVDW-SRDGALICTSCRDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             TTSCEEEEETTTT----------------EEEEEECTTTCCSC--EEEEEE-CTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCC----------------CccEEEecCCCCCc--eEEEEE-CCCCCEEEEEecCCcEEEEeCCCCceee
Confidence            5999999999887                677777  677766  999997 9999999999999999999999999999


Q ss_pred             EE-eccccc-ceEeEEcCCCCeEEEE---ecCCcEEEEcCCCCCC-C-C-CCCCcccceeeccccCCCceE-EEeCCCCe
Q 023246          158 LM-VGDRHV-VNQLEPHPHIPMFATC---GIEKTVKLWAPMPTDF-P-P-LPDNAEKIMKANKQGREDHSR-ITLTPDVI  228 (285)
Q Consensus       158 ~~-~~h~~~-v~~~~~~p~~~~l~t~---~~d~~i~iwd~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~  228 (285)
                      .+ ..|.+. +.+++|+|++++|+++   +.|+.|++||++.... . . ...+...+..+.+ .+++.++ ++++.|+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF-DPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE-ETTTTEEEEEETTCSC
T ss_pred             eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE-cCCCCEEEEEEcCCCe
Confidence            88 688766 8999999999999999   7899999999987543 1 1 1134455555544 3344444 67788999


Q ss_pred             EEEEEeccccc
Q 023246          229 MHVLRLQRRQT  239 (285)
Q Consensus       229 i~vwd~~~~~~  239 (285)
                      |++||+...+.
T Consensus       292 i~i~d~~~~~~  302 (402)
T 2aq5_A          292 IRYFEITSEAP  302 (402)
T ss_dssp             EEEEEECSSTT
T ss_pred             EEEEEecCCCc
Confidence            99999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=6.7e-31  Score=214.62  Aligned_cols=196  Identities=9%  Similarity=0.067  Sum_probs=159.0

Q ss_pred             ceeEEEEcCCCCcEEE--EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            5 RLNAIVIDPRNPNYFA--VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~--tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      .+.+++||||+ .+++  +++.|++|+|||+.+++.              ...+  .|...|.+++|+|+|++|++++++
T Consensus       135 ~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~--------------~~~~--~~~~~V~~v~fspdg~~l~s~s~~  197 (365)
T 4h5i_A          135 YTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTE--------------KFEI--ETRGEVKDLHFSTDGKVVAYITGS  197 (365)
T ss_dssp             CEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEE--------------EEEE--ECSSCCCEEEECTTSSEEEEECSS
T ss_pred             CEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcE--------------EEEe--CCCCceEEEEEccCCceEEeccce
Confidence            47789999986 6655  455799999999998862              2222  367789999999999999999888


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceE--eecccCceeeeeEEEecCCCcEEEEecCCC----eEEEEecCCCce-
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGGKL-  155 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~v~vwd~~~~~~-  155 (285)
                      .+++|+..++                +....  ...|..  .+.+++| +|+++++++++.|+    .+++|++..... 
T Consensus       198 ~~~~~~~~~~----------------~~~~~~~~~~~~~--~v~~v~f-spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          198 SLEVISTVTG----------------SCIARKTDFDKNW--SLSKINF-IADDTVLIAASLKKGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             CEEEEETTTC----------------CEEEEECCCCTTE--EEEEEEE-EETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred             eEEEEEeccC----------------cceeeeecCCCCC--CEEEEEE-cCCCCEEEEEecCCcceeEEeecccccceec
Confidence            8899988766                33322  334554  4999997 99999999998877    688999876653 


Q ss_pred             ---EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CC-CCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          156 ---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PP-LPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       156 ---~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                         ...+.+|...|++++|+|++++||+|+.|++|+|||+++++. .. +.+|...+..+.+ ++++++++++|.|++|+
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f-Spdg~~laS~S~D~tvr  337 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI-SPDSTYVASVSAANTIH  337 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE-CTTSCEEEEEETTSEEE
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE-CCCCCEEEEEeCCCeEE
Confidence               356678999999999999999999999999999999988764 44 4678888877765 67788999999999999


Q ss_pred             EEEeccc
Q 023246          231 VLRLQRR  237 (285)
Q Consensus       231 vwd~~~~  237 (285)
                      ||++...
T Consensus       338 vw~ip~~  344 (365)
T 4h5i_A          338 IIKLPLN  344 (365)
T ss_dssp             EEECCTT
T ss_pred             EEEcCCC
Confidence            9999654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7.3e-31  Score=219.41  Aligned_cols=239  Identities=7%  Similarity=0.129  Sum_probs=178.6

Q ss_pred             ccceeEEEEcC-CCCcEEEEeeCCCcEEEEEccC---CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            3 SIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRK---CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~-~~~~~l~tg~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ..+|++++|+| ++ .+|++|+.||+|+|||+.+   +...            .. ....+|...|++++|+|++++|++
T Consensus        63 ~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~------------~~-~~~~~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           63 PNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVY------------SS-SLTYDCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             TSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCC------------SC-SEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCccc------------ce-eeeccCCCCEEEEEEeCCCCEEEE
Confidence            47899999999 75 8999999999999999986   3210            11 111258999999999999999888


Q ss_pred             e-cCCcEEEEEcC---CCCCCCCCCCCCccccCCCCceEeecc--------c--CceeeeeEEE-ecCCCcEEEEecCCC
Q 023246           79 Y-NDELVYLFEKN---MGLGPSPLSLSPEDLQKREEPQVYSGH--------R--NSQTVKGVNF-FGPNDEYVMSGSDCG  143 (285)
Q Consensus        79 ~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~i~~~~~-~~~~~~~l~~~~~dg  143 (285)
                      + .|+.|++||+.   .+                +....+..+        .  ....+.++.+ ++++++++++++.|+
T Consensus       129 ~s~dg~i~vwd~~~~~~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  192 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQE----------------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS  192 (437)
T ss_dssp             EETTSEEEEEEEEEEEET----------------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred             EeCCCEEEEEEeccccCC----------------ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence            6 59999999995   33                233322222        1  1122555542 257899999999999


Q ss_pred             eEEEEecCCCceEEEEec--ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC-CCcccceeecccc---CC
Q 023246          144 HLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP-DNAEKIMKANKQG---RE  216 (285)
Q Consensus       144 ~v~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~---~~  216 (285)
                      .|++||+++++++..+..  |...|.+++|+|++++|++++.||.|++||++.+.. ..+. .+...+..+.+..   ++
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence            999999999999999988  889999999999999999999999999999987764 3332 4566666664432   35


Q ss_pred             CceEEEeCCCCeEEEEEecccccceeEee----------ec-------------------------cccccCCCCCcCeE
Q 023246          217 DHSRITLTPDVIMHVLRLQRRQTLAYRER----------RY-------------------------NAADFESDEEEGET  261 (285)
Q Consensus       217 ~~~~~~~s~d~~i~vwd~~~~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~v  261 (285)
                      +.++++++.|+.|++||+++++.+..+..          .+                         +...+.....++.|
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i  352 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSI  352 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEE
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeE
Confidence            66899999999999999987765444321          11                         12345556667788


Q ss_pred             EEeecCCCCC
Q 023246          262 YLLGFSDSDA  271 (285)
Q Consensus       262 ~~~~~~~~~~  271 (285)
                      .++++..++.
T Consensus       353 ~~wd~~~~~~  362 (437)
T 3gre_A          353 VMFSLNELSS  362 (437)
T ss_dssp             EEEETTCGGG
T ss_pred             EEEECCCccc
Confidence            8888876653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=1e-30  Score=225.76  Aligned_cols=194  Identities=21%  Similarity=0.357  Sum_probs=167.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.+++|+|++ .+|++|+.|+.|++||.. ++              ....+ .+|...|++++|+|++++|+++ .|
T Consensus       344 ~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~-~~--------------~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d  406 (577)
T 2ymu_A          344 SSSVWGVAFSPDG-QTIASASDDKTVKLWNRN-GQ--------------LLQTL-TGHSSSVRGVAFSPDGQTIASASDD  406 (577)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETT-CC--------------EEEEE-ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC-CC--------------EEEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Confidence            4678999999985 899999999999999964 33              22222 6789999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||...                 +.+..+.+|...  |.+++| +|+++++++++.|+.|++||. +++.+..+.+
T Consensus       407 ~~v~~~~~~~-----------------~~~~~~~~~~~~--v~~~~~-s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~  465 (577)
T 2ymu_A          407 KTVKLWNRNG-----------------QLLQTLTGHSSS--VWGVAF-SPDDQTIASASDDKTVKLWNR-NGQLLQTLTG  465 (577)
T ss_dssp             SEEEEECTTC-----------------CEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             CEEEEEeCCC-----------------CEEEEecCCCCC--eEEEEE-CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC
Confidence            9999999643                 477888889876  999997 999999999999999999997 4788889999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      |...|.+++|+|++++|++++.|++|++|+.....+..+.+|...+..+.+ .++++++++++.|+.|++||..
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~-s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEE-CTTSSCEEEEETTSEEEEECTT
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEE-cCCCCEEEEEECcCEEEEEeCC
Confidence            999999999999999999999999999999876666778888888877655 5677799999999999999954

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=5.2e-31  Score=219.95  Aligned_cols=250  Identities=18%  Similarity=0.220  Sum_probs=187.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-   80 (285)
                      .+.|++++|+|+++.+||+++.||.|++|++.+......     +.........+.+|...|.+++|+|++. +|+++. 
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            467999999997568999999999999999986321100     0000122222368999999999999998 888864 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCC---ceE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGG---KLV  156 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~---~~~  156 (285)
                      ||.|++|++.....         ..........+..|...  |.+++| +| ++.++++++.||.|++||++++   +.+
T Consensus       203 dg~i~vwd~~~~~~---------~~~~~~~~~~~~~h~~~--v~~v~~-~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          203 DHTICLWDINATPK---------EHRVIDAKNIFTGHTAV--VEDVAW-HLLHESLFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TSCEEEEETTSCCB---------GGGEEECSEEECCCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCeEEEEeCCCCCC---------CCceeccceeecCCCCC--EeeeEE-eCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence            99999999987410         00000124566678766  999997 88 7889999999999999999977   577


Q ss_pred             EEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC--CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          157 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      ..+..|...|++++|+|+++ ++++++.||.|++||++...  +..+..|...+..+.+......++++++.|+.|++||
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            78889999999999999988 58899999999999998743  4566678888888877555556799999999999999


Q ss_pred             ecccc--------------c----------ceeEeeecccc-ccCCCCCcCeEEEeecCCC
Q 023246          234 LQRRQ--------------T----------LAYRERRYNAA-DFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       234 ~~~~~--------------~----------~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~  269 (285)
                      +....              .          +..+.+.++.. .+.+...++.|.++....+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            98721              1          22234555555 4566667777888776544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=8e-31  Score=219.56  Aligned_cols=258  Identities=10%  Similarity=0.122  Sum_probs=180.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCC------------cceEEEEEe
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN------------IHITGLAYS   70 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~i~~s   70 (285)
                      ...|++++|+|++ .+||+|+.||.|+|||+.+++......    ...+.....+.+|.            ..|++++|+
T Consensus        28 ~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~----~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           28 ADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHS----RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCC----CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCccc----ccceeEecccccccccccccccccccCceEEEEEc
Confidence            4689999999975 899999999999999998765211100    00111222336787            889999999


Q ss_pred             cCC--CEEEEe-cCCcEEEEEcCCCCCCC-CCCCC--------CccccCCC--------------CceE-eecccCceee
Q 023246           71 NTS--ELLISY-NDELVYLFEKNMGLGPS-PLSLS--------PEDLQKRE--------------EPQV-YSGHRNSQTV  123 (285)
Q Consensus        71 ~~~--~~l~s~-~d~~i~iwd~~~~~~~~-~~~~~--------~~~~~~~~--------------~~~~-~~~~~~~~~i  123 (285)
                      |++  .+|+++ .|++|++|++....... ...+.        ...+....              .... ..+|...  |
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v  180 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH--I  180 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC--C
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc--e
Confidence            998  677774 69999999997631000 00000        00000000              0112 2467766  9


Q ss_pred             eeEEEecCCCcEEEEecCCCeEEEEecCC-CceEEE-------EecccccceEeEEcCCC-CeEEEEecCCcEEEEcCCC
Q 023246          124 KGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRL-------MVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       124 ~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~-------~~~h~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~  194 (285)
                      .+++| +|++++|++| .|+.|++||+++ ++.+..       +.+|...|.+++|+|++ ++|++++.|+.|++||++.
T Consensus       181 ~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          181 NSISI-NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             CEEEE-CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             EEEEE-cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence            99997 9999999999 799999999984 444442       45799999999999998 8999999999999999987


Q ss_pred             CCC-----CCCCCCcc------------cceeeccccCCCceEEEeCCCCeEEEEEecc-ccccee--------------
Q 023246          195 TDF-----PPLPDNAE------------KIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQTLAY--------------  242 (285)
Q Consensus       195 ~~~-----~~~~~~~~------------~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~-~~~~~~--------------  242 (285)
                      +..     ..+..+..            .+..+.+ .+++.++++++. +.|++||++. .+.+..              
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF-SHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEE-CTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEE-CCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            763     44555554            5555544 556778888888 9999999986 443332              


Q ss_pred             -----------EeeeccccccCCCCCcCeEEEeecCCCCC
Q 023246          243 -----------RERRYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       243 -----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                                 +.+++++..++....++.|++++...+..
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                       34566777777788888999999887653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.2e-30  Score=213.91  Aligned_cols=248  Identities=12%  Similarity=0.144  Sum_probs=191.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~-~   80 (285)
                      ..+|++++|+|++ .+|++|+.||.|++||+.+....     .      .....+.+|...|++++|+|+ +++|+++ .
T Consensus        67 ~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~-----~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~  134 (416)
T 2pm9_A           67 DSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNA-----I------NSMARFSNHSSSVKTVKFNAKQDNVLASGGN  134 (416)
T ss_dssp             SSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSC-----C------CEEEECCCSSSCCCEEEECSSSTTBEEEECS
T ss_pred             CCceEEEEECCCC-CeEEEEccCCeEEEeeccccccc-----c------cchhhccCCccceEEEEEcCCCCCEEEEEcC
Confidence            4679999999975 89999999999999999873210     0      122233789999999999998 7888886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |+.|++||+........ .     . .......+..|...  |.+++| +|+ +.++++++.||.|++||+++++.+..+
T Consensus       135 dg~v~iwd~~~~~~~~~-~-----~-~~~~~~~~~~~~~~--v~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  204 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPS-N-----Y-TPLTPGQSMSSVDE--VISLAW-NQSLAHVFASAGSSNFASIWDLKAKKEVIHL  204 (416)
T ss_dssp             SSCEEBCBTTTTSSCTT-T-----C-CCBCCCCSCCSSCC--CCEEEE-CSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCccccc-c-----c-cccccccccCCCCC--eeEEEe-CCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence            99999999987620000 0     0 00112233556655  999997 888 789999999999999999999999888


Q ss_pred             ecc------cccceEeEEcCCC-CeEEEEecCC---cEEEEcCCCC-C-CCCCC-CCcccceeeccccCCCceEEEeCCC
Q 023246          160 VGD------RHVVNQLEPHPHI-PMFATCGIEK---TVKLWAPMPT-D-FPPLP-DNAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       160 ~~h------~~~v~~~~~~p~~-~~l~t~~~d~---~i~iwd~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      ..|      ...|.+++|+|++ .++++++.|+   .|++||++.. . ...+. +|...+..+.+...+..++++++.|
T Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence            876      7889999999997 5799999998   9999999875 3 45566 6888887777655477899999999


Q ss_pred             CeEEEEEecccccceeE----------eeeccc-cccCCCCCcCeEEEeecCCCCCC
Q 023246          227 VIMHVLRLQRRQTLAYR----------ERRYNA-ADFESDEEEGETYLLGFSDSDAS  272 (285)
Q Consensus       227 ~~i~vwd~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  272 (285)
                      +.|++||+++.+.+..+          .+.++. ..+.....++.+.++++..+...
T Consensus       285 g~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          285 NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             CCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            99999999887655443          345555 56677777888999998876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=3.5e-31  Score=212.24  Aligned_cols=205  Identities=13%  Similarity=0.136  Sum_probs=159.4

Q ss_pred             ccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEe
Q 023246            3 SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~   79 (285)
                      ..+|++++|+|. ++.+|++|+.|++|++||+.+++..            .. ..+.+|...|++++|+|+  +.+|+++
T Consensus        57 ~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~------------~~-~~~~~h~~~V~~v~~~p~~~g~~lasg  123 (316)
T 3bg1_A           57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE------------KS-HEHAGHDSSVNSVCWAPHDYGLILACG  123 (316)
T ss_dssp             SSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC------------EE-EEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred             CccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce------------EE-EEccCCCCceEEEEECCCCCCcEEEEE
Confidence            568999999863 2489999999999999999876421            11 122689999999999998  7788886


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-----------------CcEEEEecC
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----------------DEYVMSGSD  141 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~l~~~~~  141 (285)
                      + |++|++|++....             .......+.+|...  +.+++| +|+                 +++|++|+.
T Consensus       124 s~D~~i~lwd~~~~~-------------~~~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  187 (316)
T 3bg1_A          124 SSDGAISLLTYTGEG-------------QWEVKKINNAHTIG--CNAVSW-APAVVPGSLIDHPSGQKPNYIKRFASGGC  187 (316)
T ss_dssp             CSSSCEEEEEECSSS-------------CEEECCBTTSSSSC--BCCCEE-CCCCCC------CCSCCCCCCCBEECCBT
T ss_pred             cCCCCEEEEecCCCC-------------CcceeeeeccccCC--cceEEE-ccccCCccccccccccCccccceEEEecC
Confidence            5 9999999997641             00113445567655  888986 776                 478999999


Q ss_pred             CCeEEEEecCCC---ceEEEEecccccceEeEEcCCC----CeEEEEecCCcEEEEcCCCCC-----CCCCCCCccccee
Q 023246          142 CGHLFIWKKKGG---KLVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMK  209 (285)
Q Consensus       142 dg~v~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~----~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~  209 (285)
                      |+.|++||++..   +++..+.+|...|.+++|+|++    .+|++++.|++|++|+++...     ...+..|...+..
T Consensus       188 D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~  267 (316)
T 3bg1_A          188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH  267 (316)
T ss_dssp             TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEE
T ss_pred             CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEE
Confidence            999999999755   4667788999999999999986    789999999999999987521     1223345566666


Q ss_pred             eccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          210 ANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.+ .+++.++++++.|+.|++|+....
T Consensus       268 v~~-sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          268 VSW-SITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             EEE-CTTTCCEEEEESSSCEEEEEECTT
T ss_pred             EEE-cCCCCEEEEEcCCCeEEEEEECCC
Confidence            654 556778999999999999998644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=3.1e-30  Score=208.41  Aligned_cols=214  Identities=14%  Similarity=0.114  Sum_probs=166.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~   79 (285)
                      +..+|++++|+|++ .+|++|+.||.|++||+.++...           +.....+.+|...|++++|+|  ++++|+++
T Consensus        10 H~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A           10 HDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSN-----------WELSDSWRAHDSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCC-----------EEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCc-----------ceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence            45789999999975 89999999999999999876411           011222268999999999999  58888885


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCceE
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~~~  156 (285)
                       .|+.|++||+..+....       .....+.+..+..|...  |.+++| +|+  ++++++++.||.|++||+++++.+
T Consensus        78 ~~dg~v~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEEC-------SGRRWNKLCTLNDSKGS--LYSVKF-APAHLGLKLACLGNDGILRLYDALEPSDL  147 (351)
T ss_dssp             ETTSCEEEEEECTTSCTT-------SSCSEEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred             cCCCeEEEEecCCCcccc-------cccCcceeeeecccCCc--eeEEEE-cCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence             59999999998752100       00111235667778766  999997 998  999999999999999999887654


Q ss_pred             EEEe-------------cccccceEeEEcCC---CCeEEEEecCCcEEEEcCCCCC---CCCCCCCcccceeeccccCCC
Q 023246          157 RLMV-------------GDRHVVNQLEPHPH---IPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGRED  217 (285)
Q Consensus       157 ~~~~-------------~h~~~v~~~~~~p~---~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  217 (285)
                      ..+.             .|...+.+++|+|+   +.++++++.|+.+.+|+...+.   ...+.+|...+..+.+.....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~  227 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG  227 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence            3322             57789999999997   8899999999999888877665   355667888887776644332


Q ss_pred             ---ceEEEeCCCCeEEEEEeccc
Q 023246          218 ---HSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       218 ---~~~~~~s~d~~i~vwd~~~~  237 (285)
                         .++++++.|+.|++||++..
T Consensus       228 ~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          228 RWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CcceEEEEEcCCCeEEEEeCCCC
Confidence               68999999999999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.5e-31  Score=218.52  Aligned_cols=212  Identities=16%  Similarity=0.274  Sum_probs=170.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s~-~   80 (285)
                      ..+|++++|+|+++.+|++++.|+.|++||+.+++.....     ...+.. .....|...|.+++|+|+ +.+|+++ .
T Consensus       113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~  186 (416)
T 2pm9_A          113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-----YTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGS  186 (416)
T ss_dssp             SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-----CCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESS
T ss_pred             ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-----cccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcC
Confidence            5689999999985689999999999999999877521000     000011 122678999999999999 6788886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc------cCceeeeeEEEecCCC-cEEEEecCCC---eEEEEec
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH------RNSQTVKGVNFFGPND-EYVMSGSDCG---HLFIWKK  150 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~-~~l~~~~~dg---~v~vwd~  150 (285)
                      |+.|++||+.++                +.+..+..+      ...  +.+++| +|++ .++++++.|+   .|++||+
T Consensus       187 dg~v~iwd~~~~----------------~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          187 SNFASIWDLKAK----------------KEVIHLSYTSPNSGIKQQ--LSVVEW-HPKNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             SSCEEEEETTTT----------------EEEEEECCCCCSSCCCCC--EEEEEE-CSSCTTEEEEEECCSSSCCCCEEET
T ss_pred             CCCEEEEECCCC----------------CcceEEeccccccccCCc--eEEEEE-CCCCCCEEEEEECCCCCceEEEEeC
Confidence            999999999887                566666655      444  999997 8886 6899999998   9999999


Q ss_pred             CCC-ceEEEEe-cccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCC
Q 023246          151 KGG-KLVRLMV-GDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPD  226 (285)
Q Consensus       151 ~~~-~~~~~~~-~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  226 (285)
                      +++ +++..+. +|...|.+++|+| ++++|++++.|+.|++||++.++ +..+..|...+..+.+......++++++.|
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence            986 5677777 8999999999999 89999999999999999998776 456667777777776644344799999999


Q ss_pred             CeEEEEEeccccc
Q 023246          227 VIMHVLRLQRRQT  239 (285)
Q Consensus       227 ~~i~vwd~~~~~~  239 (285)
                      +.|++|++.....
T Consensus       328 ~~i~iw~~~~~~~  340 (416)
T 2pm9_A          328 NKIEVQTLQNLTN  340 (416)
T ss_dssp             SEEEEEESCCCCC
T ss_pred             CcEEEEEccCCCC
Confidence            9999999987653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=3.4e-30  Score=210.61  Aligned_cols=232  Identities=11%  Similarity=0.136  Sum_probs=178.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +..+|++++|+|++ .+|++|+.|+.|++||+.+++.             .....+.+|...|.+++|+|++++|+++ .
T Consensus         7 ~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   72 (372)
T 1k8k_C            7 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKW-------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGT   72 (372)
T ss_dssp             CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEE-------------EEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             cCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcE-------------EeeeeecCCCCcccEEEEeCCCCEEEEEcC
Confidence            56789999999985 8999999999999999987741             1222226899999999999999999885 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceE--eecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce---
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---  155 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---  155 (285)
                      |+.|++||+.++                +....  +..|...  +.+++| +|+++++++++.|+.|++||++.++.   
T Consensus        73 dg~i~vwd~~~~----------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  133 (372)
T 1k8k_C           73 DRNAYVWTLKGR----------------TWKPTLVILRINRA--ARCVRW-APNEKKFAVGSGSRVISICYFEQENDWWV  133 (372)
T ss_dssp             TSCEEEEEEETT----------------EEEEEEECCCCSSC--EEEEEE-CTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             CCeEEEEECCCC----------------eeeeeEEeecCCCc--eeEEEE-CCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence            999999999765                33333  3456655  999997 99999999999999999999988763   


Q ss_pred             EEEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCC------------------CCC-CCCCCCCcccceeeccccC
Q 023246          156 VRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM------------------PTD-FPPLPDNAEKIMKANKQGR  215 (285)
Q Consensus       156 ~~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~------------------~~~-~~~~~~~~~~~~~~~~~~~  215 (285)
                      ...+ ..|...|.+++|+|++++|++++.|+.|++||++                  .+. +..+..|...+..+.+ .+
T Consensus       134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~  212 (372)
T 1k8k_C          134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SA  212 (372)
T ss_dssp             EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE-CS
T ss_pred             eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE-CC
Confidence            3333 5688999999999999999999999999999964                  222 3345566666666654 45


Q ss_pred             CCceEEEeCCCCeEEEEEecccccceeE----------eeeccccccCCCCCcCeEEEeecCC
Q 023246          216 EDHSRITLTPDVIMHVLRLQRRQTLAYR----------ERRYNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       216 ~~~~~~~~s~d~~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      ++.++++++.|+.|++||+++.+.+..+          .+.+++..+..+ .++.+++++..+
T Consensus       213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          213 NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            6678999999999999999887655443          334444444444 455666666655

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=6.2e-31  Score=213.73  Aligned_cols=237  Identities=10%  Similarity=0.078  Sum_probs=185.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeC---CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC---CCEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---SELL   76 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l   76 (285)
                      ..+|++++|+|++..++++|+.   |+.|++||+.+++.              ......+|...|.+++|+|+   +.+|
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~l   83 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL--------------KLLREIEKAKPIKCGTFGATSLQQRYL   83 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE--------------EEEEEEEESSCEEEEECTTCCTTTCCE
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc--------------cceeeecccCcEEEEEEcCCCCCCceE
Confidence            5689999999987667778877   99999999998762              22222468899999999998   6888


Q ss_pred             EEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCC-CceEeecccCceeeeeEEE-----ecCCCcEEEEecCCCeEEEEe
Q 023246           77 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNF-----FGPNDEYVMSGSDCGHLFIWK  149 (285)
Q Consensus        77 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-----~~~~~~~l~~~~~dg~v~vwd  149 (285)
                      +++ .|+.|++||+..+                + .+..+.+|...  |.++.|     ++++++++++++.||.|++||
T Consensus        84 ~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           84 ATGDFGGNLHIWNLEAP----------------EMPVYSVKGHKEI--INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             EEEETTSCEEEECTTSC----------------SSCSEEECCCSSC--EEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             EEecCCCeEEEEeCCCC----------------CccEEEEEecccc--eEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            885 5999999999877                4 77888889876  999854     268999999999999999999


Q ss_pred             cCCCc-eEEEEecccc----cceEeE----EcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccC--CCc
Q 023246          150 KKGGK-LVRLMVGDRH----VVNQLE----PHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR--EDH  218 (285)
Q Consensus       150 ~~~~~-~~~~~~~h~~----~v~~~~----~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~  218 (285)
                      +++++ .+..+..|.+    .|.+++    |+|+++++++++.|+.|++||++.........+...+..+.+...  +..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  225 (357)
T 3i2n_A          146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN  225 (357)
T ss_dssp             TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC
T ss_pred             CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC
Confidence            99887 6777766554    788888    789999999999999999999988776444556666666655432  667


Q ss_pred             eEEEeCCCCeEEEEEeccccccee---------------Eeeecccc-ccCCCCCcCeEEEeecCCCCC
Q 023246          219 SRITLTPDVIMHVLRLQRRQTLAY---------------RERRYNAA-DFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      ++++++.|+.|++||++..+....               +.+.++.. .+.....++.+.+++...+..
T Consensus       226 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          226 KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            899999999999999987654432               23455555 566677778888888775543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.3e-29  Score=209.74  Aligned_cols=233  Identities=12%  Similarity=0.181  Sum_probs=182.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .+|++|+.||.|++||+.+++              ....+ .+|...|.+++|+  +++|+++ .|
T Consensus       134 ~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~--------------~~~~~-~~~~~~v~~~~~~--~~~l~~~~~d  195 (401)
T 4aez_A          134 STYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQT--------------KLRTM-AGHQARVGCLSWN--RHVLSSGSRS  195 (401)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEEEE-CCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCe--------------EEEEe-cCCCCceEEEEEC--CCEEEEEcCC
Confidence            5689999999975 899999999999999998876              23333 6899999999994  4677775 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||+....               .....+..|...  |.+++| +|+++++++++.|+.|++||+++++.+..+..
T Consensus       196 g~i~i~d~~~~~---------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  257 (401)
T 4aez_A          196 GAIHHHDVRIAN---------------HQIGTLQGHSSE--VCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN  257 (401)
T ss_dssp             SEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred             CCEEEEecccCc---------------ceeeEEcCCCCC--eeEEEE-cCCCCEEEEEeCCCeEEEccCCCCCccEEecC
Confidence            999999998542               467788888876  999997 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCe-EEEEe--cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE--eCCCCeEEEEEecc
Q 023246          162 DRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT--LTPDVIMHVLRLQR  236 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~d~~i~vwd~~~  236 (285)
                      |...|.+++|+|++.. +++++  .|+.|++||++.+.......+...+..+.+ .+++..+++  ++.|+.|++|++.+
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIW-SPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEE-CSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEE-CCCCCeEEEEeecCCCcEEEEecCC
Confidence            9999999999997765 55654  799999999987764322234455555544 455666666  66899999999987


Q ss_pred             ccccee------------EeeeccccccCCCCCcCeEEEeecCCCCCC
Q 023246          237 RQTLAY------------RERRYNAADFESDEEEGETYLLGFSDSDAS  272 (285)
Q Consensus       237 ~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  272 (285)
                      .+....            +.+.+++..+.....++.+.++++.+++.-
T Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             TEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             ccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            533322            245666667777777888999998877643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=2.7e-30  Score=231.61  Aligned_cols=232  Identities=18%  Similarity=0.237  Sum_probs=189.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+||+|+.||.|+|||+.+++              ....+ .+|..+|++++|+|++++|+++ .|
T Consensus        13 ~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~--------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A           13 SDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQV--------------EVRSI-QVTETPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             CSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCc--------------eEEEE-ecCCCcEEEEEEeCCCCEEEEEeCC
Confidence            5689999999986 899999999999999998876              22333 6799999999999999999886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~  160 (285)
                      +.|++||+.++                +.+..+.+|...  |.+++| +|+++++++++.||.|++||+.++ .....+.
T Consensus        77 g~i~vw~~~~~----------------~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  137 (814)
T 3mkq_A           77 FRIRVFNYNTG----------------EKVVDFEAHPDY--IRSIAV-HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE  137 (814)
T ss_dssp             SEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred             CeEEEEECCCC----------------cEEEEEecCCCC--EEEEEE-eCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence            99999999887                678888888876  999997 999999999999999999999887 6678888


Q ss_pred             cccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCC-CCCCCCc-ccceeeccccC-CCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA-EKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +|...|.+++|+| ++..|++++.||.|++||+..... ..+..+. ..+....+... ++.++++++.|+.|++||+.+
T Consensus       138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~  217 (814)
T 3mkq_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (814)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred             CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            9999999999999 888999999999999999976653 3333333 45555544332 567899999999999999887


Q ss_pred             cccceeE----------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          237 RQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       237 ~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ++.+..+          .+.+++..+.....++.+.+++...+
T Consensus       218 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            6544433          34555556666666777888877654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=9.1e-30  Score=209.22  Aligned_cols=205  Identities=12%  Similarity=0.101  Sum_probs=159.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ....|.+++|+|+++.+|++++.|+.|++||+.+...             ........|...|.+++|+|++++|+++ .
T Consensus       117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  183 (383)
T 3ei3_B          117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------QVFAKTDSWDYWYCCVDVSVSRQMLATGDS  183 (383)
T ss_dssp             TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------EEEECCCCSSCCEEEEEEETTTTEEEEEET
T ss_pred             cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------EEEeccCCCCCCeEEEEECCCCCEEEEECC
Confidence            3578999999995458999999999999999985431             1111114566889999999999999986 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCC----Cce
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG----GKL  155 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~----~~~  155 (285)
                      |+.|++||+. +                +.+..+..|...  |.+++| +|+++ ++++++.|+.|++||+++    +.+
T Consensus       184 d~~i~i~d~~-~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  243 (383)
T 3ei3_B          184 TGRLLLLGLD-G----------------HEIFKEKLHKAK--VTHAEF-NPRCDWLMATSSVDATVKLWDLRNIKDKNSY  243 (383)
T ss_dssp             TSEEEEEETT-S----------------CEEEEEECSSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred             CCCEEEEECC-C----------------CEEEEeccCCCc--EEEEEE-CCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence            9999999995 3                577888888876  999997 99998 999999999999999987    566


Q ss_pred             EEEEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCC-CCCCCCc-------ccceeecc----------ccCC
Q 023246          156 VRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA-------EKIMKANK----------QGRE  216 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~-------~~~~~~~~----------~~~~  216 (285)
                      +..+ +|...|.+++|+| ++++|++++.|+.|++||++.... ..+..+.       ..+ ...+          ..++
T Consensus       244 ~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~s~d  321 (383)
T 3ei3_B          244 IAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI-KATWHPMYDLIVAGRYPD  321 (383)
T ss_dssp             EEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCC-CCEECSSSSEEEEECBCC
T ss_pred             EEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccce-EEeccCCCCceEEEecCC
Confidence            6666 6999999999999 999999999999999999987653 3332221       111 1111          1222


Q ss_pred             CceEEEeCCCCeEEEEEecccccceeE
Q 023246          217 DHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       217 ~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      +.+  +++.|+.|++||+.+++.+..+
T Consensus       322 g~~--s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          322 DQL--LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             TTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred             ccc--ccCCCCeEEEEecCCCceeeee
Confidence            323  6778999999999887665554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=6.8e-31  Score=214.07  Aligned_cols=227  Identities=14%  Similarity=0.150  Sum_probs=171.7

Q ss_pred             ccceeEEEEcCCC---CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEE
Q 023246            3 SIRLNAIVIDPRN---PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s   78 (285)
                      ...|++++|+|++   +.+|++|+.||.|++||+.+++              ....+ .+|...|.+++|+| ++.+|++
T Consensus        69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--------------~~~~~-~~~~~~i~~~~~~~~~~~~l~s  133 (366)
T 3k26_A           69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ--------------CIKHY-VGHGNAINELKFHPRDPNLLLS  133 (366)
T ss_dssp             TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC--------------EEEEE-ESCCSCEEEEEECSSCTTEEEE
T ss_pred             CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce--------------Eeeee-cCCCCcEEEEEECCCCCCEEEE
Confidence            3679999999973   2699999999999999999876              22222 67999999999999 8888888


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe---ecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      + .|+.|++||+..+                +.+..+   ..|...  |.+++| +|+++++++++.||.|++||+++++
T Consensus       134 ~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          134 VSKDHALRLWNIQTD----------------TLVAIFGGVEGHRDE--VLSADY-DLLGEKIMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             EETTSCEEEEETTTT----------------EEEEEECSTTSCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEESCSHH
T ss_pred             EeCCCeEEEEEeecC----------------eEEEEecccccccCc--eeEEEE-CCCCCEEEEecCCCCEEEEECCCCc
Confidence            6 5999999999877                566666   567766  999997 9999999999999999999998776


Q ss_pred             eEEEEe----------------------------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC---------
Q 023246          155 LVRLMV----------------------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---------  197 (285)
Q Consensus       155 ~~~~~~----------------------------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---------  197 (285)
                      .+..+.                            .|...|.+++|+  ++++++++.|+.|++||++....         
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  272 (366)
T 3k26_A          195 MMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSE  272 (366)
T ss_dssp             HHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTC
T ss_pred             cccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCC
Confidence            543333                            389999999998  67999999999999999876532         


Q ss_pred             ------CCCCCCcccceeeccccCC--CceEEEeCCCCeEEEEEecccccce----------------eEeeeccccccC
Q 023246          198 ------PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRRQTLA----------------YRERRYNAADFE  253 (285)
Q Consensus       198 ------~~~~~~~~~~~~~~~~~~~--~~~~~~~s~d~~i~vwd~~~~~~~~----------------~~~~~~~~~~~~  253 (285)
                            ..+..|...+..+.+ .++  +.++++++.||.|++||+...+...                .+.+.+++..+.
T Consensus       273 ~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  351 (366)
T 3k26_A          273 SNVTILGRFDYSQCDIWYMRF-SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI  351 (366)
T ss_dssp             CCEEEEEEEECSSCCSSCCCC-EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred             cchheeccccccCCcEEEEEE-cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEE
Confidence                  112233334433333 334  6789999999999999998764332                123344444455


Q ss_pred             CCCCcCeEEEeec
Q 023246          254 SDEEEGETYLLGF  266 (285)
Q Consensus       254 ~~~~~~~v~~~~~  266 (285)
                      ....++.|+++++
T Consensus       352 s~~~dg~i~iwd~  364 (366)
T 3k26_A          352 AVCDDASIWRWDR  364 (366)
T ss_dssp             EEETTSEEEEEEC
T ss_pred             EEeCCCEEEEEEe
Confidence            5555555555554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=6.4e-30  Score=207.75  Aligned_cols=237  Identities=9%  Similarity=0.094  Sum_probs=180.5

Q ss_pred             ccceeEEEEcCCC--CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE------ecCCC
Q 023246            3 SIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SNTSE   74 (285)
Q Consensus         3 ~~~v~~~~~s~~~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~------s~~~~   74 (285)
                      ..+|++++|+|++  +.+|++|+.||.|++||+.+++              .....+.+|...|.++.|      +|+++
T Consensus        65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~  130 (357)
T 3i2n_A           65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--------------MPVYSVKGHKEIINAIDGIGGLGIGEGAP  130 (357)
T ss_dssp             SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--------------SCSEEECCCSSCEEEEEEESGGGCC-CCC
T ss_pred             cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--------------ccEEEEEecccceEEEeeccccccCCCcc
Confidence            4689999999973  4899999999999999999775              122223689999999965      67888


Q ss_pred             EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC--ceeeeeEEE---ecCCCcEEEEecCCCeEEEE
Q 023246           75 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNF---FGPNDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        75 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~---~~~~~~~l~~~~~dg~v~vw  148 (285)
                      +|+++ .|+.|++||+..+.               ..+..+..+..  ...+.+++|   ++++++++++++.||.|++|
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKD---------------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCS---------------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCC---------------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence            88886 59999999998762               25666665543  123888884   37999999999999999999


Q ss_pred             ecCCCceEEEEecccccceEeEEcC---CCCeEEEEecCCcEEEEcCCCCCC-CCCC-----CCcccceeeccccCCCce
Q 023246          149 KKKGGKLVRLMVGDRHVVNQLEPHP---HIPMFATCGIEKTVKLWAPMPTDF-PPLP-----DNAEKIMKANKQGREDHS  219 (285)
Q Consensus       149 d~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~t~~~d~~i~iwd~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~  219 (285)
                      |+++++.... ..|...|.+++|+|   ++.+|++++.|+.|++||++.... ..+.     .|...+..+.+......+
T Consensus       196 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  274 (357)
T 3i2n_A          196 DLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL  274 (357)
T ss_dssp             ETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             ECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence            9998887544 56889999999999   899999999999999999976653 3333     677777777664333338


Q ss_pred             EEEeCCCCeEEEEEecccccc-----------------------------eeEeeeccccccC-CCCCcCeEEEeecCCC
Q 023246          220 RITLTPDVIMHVLRLQRRQTL-----------------------------AYRERRYNAADFE-SDEEEGETYLLGFSDS  269 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~~-----------------------------~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~  269 (285)
                      +++++.|+.|++||++.....                             ..+.+.+++..+. +...++.+.++++...
T Consensus       275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            999999999999999854322                             2234566666666 5666777888777654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=1.2e-30  Score=218.06  Aligned_cols=233  Identities=15%  Similarity=0.104  Sum_probs=166.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      +.++|++++|+|.++.+|++|+.||+|++||+.++...             .......+...+.+++|+|++.+|++++ 
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  229 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-------------VFASSDTINIWFCSLDVSASSRMVVTGDN  229 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-------------EEECCSSCSCCCCCEEEETTTTEEEEECS
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-------------EEeccCCCCccEEEEEECCCCCEEEEEeC
Confidence            35689999999966689999999999999999865421             1111133455688999999999999975 


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceEE--
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR--  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~--  157 (285)
                      |+.|++||+...                 .+..+.+|...  |.+++| +|+++ ++++++.|+.|++||+++.+...  
T Consensus       230 dg~i~~wd~~~~-----------------~~~~~~~h~~~--v~~v~~-~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~  289 (435)
T 4e54_B          230 VGNVILLNMDGK-----------------ELWNLRMHKKK--VTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASF  289 (435)
T ss_dssp             SSBEEEEESSSC-----------------BCCCSBCCSSC--EEEEEE-CTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred             CCcEeeeccCcc-----------------eeEEEecccce--EEeeee-cCCCceEEEEecCcceeeEEecccccccceE
Confidence            999999998753                 56677888876  999997 88775 78899999999999998766433  


Q ss_pred             -EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcc------cceeeccccCCCceEEE-------
Q 023246          158 -LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAE------KIMKANKQGREDHSRIT-------  222 (285)
Q Consensus       158 -~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~-------  222 (285)
                       ...+|...|++++|+|++++|++++.|++|++||++.+.. ..+..|..      ..+...+ ......+++       
T Consensus       290 ~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~  368 (435)
T 4e54_B          290 LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW-HPRYNLIVVGRYPDPN  368 (435)
T ss_dssp             SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE-CSSSSCEEEECCCCTT
T ss_pred             EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE-cCCCCEEEEEEcCCCC
Confidence             3357999999999999999999999999999999977642 22222211      1111111 112222222       


Q ss_pred             -----eCCCCeEEEEEecccccceeE------------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          223 -----LTPDVIMHVLRLQRRQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       223 -----~s~d~~i~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                           +..++.|++||..+++.+..+            .++|++..++++. ++.|.+++..++
T Consensus       369 ~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          369 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             SCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             eEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence                 233468999999887655443            2455666666554 456888777665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=207.16  Aligned_cols=207  Identities=12%  Similarity=0.098  Sum_probs=170.6

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +..+|++++|+|++ .+|++|+.||.|++||+.+++              ....+ .+|...|.+++|+|++++|+++ .
T Consensus        31 h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           31 HERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGE--------------RLGTL-DGHTGTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             CSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCC--------------EEEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCch--------------hhhhh-hhcCCcEEEEEEcCCCCEEEEEeC
Confidence            35789999999975 899999999999999998876              22333 6899999999999999999885 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC-----CeEEEEecCCCc-
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-----GHLFIWKKKGGK-  154 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~v~vwd~~~~~-  154 (285)
                      |+.|++||+.++                +.+..+. +...  +.+++| +|+++++++++.+     +.|++||+.... 
T Consensus        95 dg~i~iwd~~~~----------------~~~~~~~-~~~~--v~~~~~-~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~  154 (369)
T 3zwl_B           95 DYSIKLWDVSNG----------------QCVATWK-SPVP--VKRVEF-SPCGNYFLAILDNVMKNPGSINIYEIERDSA  154 (369)
T ss_dssp             TTEEEEEETTTC----------------CEEEEEE-CSSC--EEEEEE-CTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred             CCeEEEEECCCC----------------cEEEEee-cCCC--eEEEEE-ccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence            999999999887                5666666 5544  999997 9999999999998     999999987653 


Q ss_pred             ----------eEEEEecccc--cceEeEEcCCCCeEEEEecCCcEEEEcCCC-CC-CCCCCCCcccceeeccccCCCceE
Q 023246          155 ----------LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TD-FPPLPDNAEKIMKANKQGREDHSR  220 (285)
Q Consensus       155 ----------~~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~  220 (285)
                                .+..+..|..  .+.+++|+|++++|++++.||.|++||++. .. +..+..|...+..+.+ .+++.++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l  233 (369)
T 3zwl_B          155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF-SPDLTYF  233 (369)
T ss_dssp             TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE-CTTSSEE
T ss_pred             ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE-CCCCCEE
Confidence                      3344555665  899999999999999999999999999987 33 4556667777766655 4567789


Q ss_pred             EEeCCCCeEEEEEecccccceeEee
Q 023246          221 ITLTPDVIMHVLRLQRRQTLAYRER  245 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~~~~~~~~~  245 (285)
                      ++++.|+.|++||+++.+.+..+..
T Consensus       234 ~~~~~d~~i~v~d~~~~~~~~~~~~  258 (369)
T 3zwl_B          234 ITSSRDTNSFLVDVSTLQVLKKYET  258 (369)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEecCCceEEEEECCCCceeeeecC
Confidence            9999999999999998776665543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.1e-29  Score=210.18  Aligned_cols=241  Identities=12%  Similarity=0.077  Sum_probs=180.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-cCCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~d~~   83 (285)
                      ...++++|+...++++++.||.|+||++.......           .....+.+|...|++++|+| ++++|+++ .|+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~  105 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-----------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT  105 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-----------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-----------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence            34588888754566678999999999996542110           11222378999999999999 88899986 5999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEEE--e
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLM--V  160 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~--~  160 (285)
                      |++|++..+...         ....+.+..+.+|...  |.+++| +|++ +++++++.||.|++||+++++.+..+  .
T Consensus       106 v~vw~~~~~~~~---------~~~~~~~~~~~~h~~~--v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  173 (402)
T 2aq5_A          106 VMVWEIPDGGLV---------LPLREPVITLEGHTKR--VGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD  173 (402)
T ss_dssp             EEEEECCTTCCS---------SCBCSCSEEEECCSSC--EEEEEE-CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT
T ss_pred             EEEEEccCCCCc---------cccCCceEEecCCCCe--EEEEEE-CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC
Confidence            999999875100         0001356788889876  999997 9997 69999999999999999999999999  7


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCC-CCCccc-ceeeccccCCCceEEEe---CCCCeEEEEEe
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL-PDNAEK-IMKANKQGREDHSRITL---TPDVIMHVLRL  234 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~i~vwd~  234 (285)
                      .|...|.+++|+|++++|++++.|+.|++||++.+.. ..+ ..|... +....+ .+++.+++++   +.|+.|++||+
T Consensus       174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE-CSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE-cCCCcEEEEeccCCCCceEEEEcC
Confidence            8999999999999999999999999999999987763 344 455554 444433 4567788888   79999999999


Q ss_pred             ccccccee------------EeeeccccccC-CCCCcCeEEEeecCCCC
Q 023246          235 QRRQTLAY------------RERRYNAADFE-SDEEEGETYLLGFSDSD  270 (285)
Q Consensus       235 ~~~~~~~~------------~~~~~~~~~~~-~~~~~~~v~~~~~~~~~  270 (285)
                      +.......            +.+.+++..+. .+..++.|.++++..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            87654211            13344555453 34456678887776654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-30  Score=219.15  Aligned_cols=162  Identities=10%  Similarity=0.113  Sum_probs=137.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEE--EEecCC-CEEEEe
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGL--AYSNTS-ELLISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i--~~s~~~-~~l~s~   79 (285)
                      ...|++++|+|+  .+|++|+.||+|++||+.+++              .+...+.+|...|+++  .|+|++ ++|+++
T Consensus       266 ~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~--------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          266 DSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPE--------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             TTCEEEEEESSS--SEEEEEETTSEEEEEETTBCS--------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             CCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCC--------------CceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence            467999999984  589999999999999998764              2223337899999999  578888 888886


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                       .|++|+|||++++                +....+.+|.....+.+++| +|+++.+++++.|++|++||++++.++..
T Consensus       330 S~D~tvklWD~~~~----------------~~~~~~~~~~~~~~v~~v~f-sp~~~~l~s~~~d~tv~lwd~~~~~~~~~  392 (524)
T 2j04_B          330 AVDGYFYIFNPKDI----------------ATTKTTVSRFRGSNLVPVVY-CPQIYSYIYSDGASSLRAVPSRAAFAVHP  392 (524)
T ss_dssp             ETTSEEEEECGGGH----------------HHHCEEEEECSCCSCCCEEE-ETTTTEEEEECSSSEEEEEETTCTTCCEE
T ss_pred             ccCCeEEEEECCCC----------------CcccccccccccCcccceEe-CCCcCeEEEeCCCCcEEEEECccccccee
Confidence             4999999999876                56666766653223788997 99999999999999999999999998888


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      +.+|.+.|++++|+|++++|++|+.|++|++|++....+
T Consensus       393 l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~  431 (524)
T 2j04_B          393 LVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL  431 (524)
T ss_dssp             EEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT
T ss_pred             eecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc
Confidence            999999999999999999999999999999999866533

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-30  Score=220.05  Aligned_cols=210  Identities=10%  Similarity=0.036  Sum_probs=166.4

Q ss_pred             ccceeEEEEcCC-----CCcEEEEeeCCCcEEEEEccCCcccCC--cCCCCCcccccccccCCCCCcceEEEEEecCCCE
Q 023246            3 SIRLNAIVIDPR-----NPNYFAVGGSDEYARVYDIRKCHWYSP--ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL   75 (285)
Q Consensus         3 ~~~v~~~~~s~~-----~~~~l~tg~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~   75 (285)
                      .+.|++++|+|+     ++.+||+|+.||+|+|||+.+++....  ....      .+...+.+|...|++++|++++ .
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~------~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE------KPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC------SCSEEECCTTTCEEEEEESSSS-E
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec------CceEEEEcCCCCEEEEEecCCC-e
Confidence            357999999996     136999999999999999987642100  0001      1112236899999999999865 6


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEE-EecCCC-cEEEEecCCCeEEEEecCC
Q 023246           76 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPND-EYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        76 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~l~~~~~dg~v~vwd~~~  152 (285)
                      |++| .||+|++||+.++.               .....+.+|...  |.+++ .+++++ ++|++++.|++|++||+++
T Consensus       280 lasgs~DgtV~lWD~~~~~---------------~~~~~~~~H~~~--V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPE---------------VPSFYDQVHDSY--ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             EEEEETTSEEEEEETTBCS---------------SCSEEEECSSSC--EEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             EEEEeCCCEEEEEECCCCC---------------CceEEeeccccc--EEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            7775 59999999998651               344568889877  99993 248887 8999999999999999998


Q ss_pred             CceEEEEecccc--cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246          153 GKLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       153 ~~~~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                      ++++..+.+|..  .|.+++|+|+++.+++++.|++|++||++.... ..+.+|...+..+.+ ++++..+++++.|++|
T Consensus       343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~-Sp~g~~l~Sgs~Dgtv  421 (524)
T 2j04_B          343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV-SRLHPMVLAGSADGSL  421 (524)
T ss_dssp             HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC-CSSCCBCEEEETTTEE
T ss_pred             CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe-CCCCCeEEEEECCCEE
Confidence            887777777753  588999999999999999999999999987764 567778888887766 5667789999999999


Q ss_pred             EEEEeccc
Q 023246          230 HVLRLQRR  237 (285)
Q Consensus       230 ~vwd~~~~  237 (285)
                      ++||+..+
T Consensus       422 ~lwd~~~~  429 (524)
T 2j04_B          422 IITNAARR  429 (524)
T ss_dssp             ECCBSCSS
T ss_pred             EEEechHh
Confidence            99997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=3.5e-29  Score=210.83  Aligned_cols=245  Identities=13%  Similarity=0.144  Sum_probs=186.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~   79 (285)
                      +..+|++++|+|++  +|++|+.||+|++||+.+++              +...+ .+|...|.+++|++  ++.+++++
T Consensus       161 h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~--------------~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~  223 (464)
T 3v7d_B          161 HDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC--------------CTHVF-EGHNSTVRCLDIVEYKNIKYIVTG  223 (464)
T ss_dssp             CSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTE--------------EEEEE-CCCSSCEEEEEEEESSSCEEEEEE
T ss_pred             CCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCc--------------EEEEE-CCCCCccEEEEEecCCCCCEEEEE
Confidence            35789999999964  99999999999999999886              33333 68999999999995  66788885


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCC-------ccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSP-------EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                       .|+.|++||+.............       ...........+.+|...  +.++   +++++++++++.||.|++||++
T Consensus       224 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~---~~~~~~l~~~~~d~~i~vwd~~  298 (464)
T 3v7d_B          224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--VRTV---SGHGNIVVSGSYDNTLIVWDVA  298 (464)
T ss_dssp             ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC--EEEE---EEETTEEEEEETTSCEEEEETT
T ss_pred             cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce--EEEE---cCCCCEEEEEeCCCeEEEEECC
Confidence             59999999998763111000000       000011124556677755  6665   4578999999999999999999


Q ss_pred             CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          152 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      +++++..+.+|...|.+++|+|+++++++++.|+.|++||+++++ +..+.+|...+..+.+.   +.++++++.|+.|+
T Consensus       299 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~  375 (464)
T 3v7d_B          299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAADGSIR  375 (464)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEEEEEETTSEEE
T ss_pred             CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEEEEEeCCCcEE
Confidence            999999999999999999999999999999999999999998775 46677788877766553   46899999999999


Q ss_pred             EEEecccccceeE---------eeeccccccCCCCCcCeEEEeecCCCCCC
Q 023246          231 VLRLQRRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDSDAS  272 (285)
Q Consensus       231 vwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  272 (285)
                      +||+.+.......         .+.+++..+..+. ++.+.++++..++.-
T Consensus       376 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          376 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             EEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence            9999876544333         3444555555555 678999998877543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=9.7e-29  Score=204.22  Aligned_cols=213  Identities=16%  Similarity=0.249  Sum_probs=164.4

Q ss_pred             CccceeEEEEcC-CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe
Q 023246            2 NSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~   79 (285)
                      ++.+|++++|+| ++ .+|++|+.||.|++||+.+++.......... .. .......+|...|.+++|+| ++.+|+++
T Consensus        42 h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           42 HGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-CS-IGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEE-EE-ECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             cCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEecccc-cc-ccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            467999999999 75 8999999999999999998764322211000 00 00111246999999999999 66788885


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC---CCcEEEEecCCCeEEEEecCCCce
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---NDEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                       .|+.|++||+.++                +....+. +...  +.++.+ .+   ++.++++++.++.|++||+++++.
T Consensus       119 ~~d~~i~iwd~~~~----------------~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          119 SFDKTLKVWDTNTL----------------QTADVFN-FEET--VYSHHM-SPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             ETTSEEEEEETTTT----------------EEEEEEE-CSSC--EEEEEE-CSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             eCCCeEEEeeCCCC----------------ccceecc-CCCc--eeeeEe-ecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence             5999999999877                4555555 4433  788886 66   455999999999999999999999


Q ss_pred             EEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCC--CC---------------CCCCCcccceeeccccCCC
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FP---------------PLPDNAEKIMKANKQGRED  217 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~  217 (285)
                      +..+..|...|.+++|+|++++ |++++.||.|++||++...  +.               ....|...+..+.+ .+++
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~  257 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF-TSDG  257 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE-CTTS
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE-cCCC
Confidence            9999999999999999999995 8999999999999996543  11               12345666665554 4567


Q ss_pred             ceEEEeCCCCeEEEEEecccc
Q 023246          218 HSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .++++++.|+.|++||+.+.+
T Consensus       258 ~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          258 LHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             SEEEEEETTSCEEEEETTTCC
T ss_pred             CEEEEecCCCeEEEEECCCCc
Confidence            789999999999999987643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.3e-30  Score=210.64  Aligned_cols=201  Identities=11%  Similarity=0.058  Sum_probs=154.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|++++|+|++ .+|++|+.|++|++||+.+++..            .......+|...|.+++|+|++++|+++ .|
T Consensus        55 ~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           55 DKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTW------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             SSCEEEEEECTTT-CCEEEEETTSSEEEC------CC------------CCEEECCCCSSCEEEEECCTTSSCCEEEESS
T ss_pred             CceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCce------------eeeeEecccCCceEEEEECCCCCEEEEEecC
Confidence            5689999999985 89999999999999999877510            1222236799999999999999988885 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---------
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---------  151 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---------  151 (285)
                      +.|++||+....             .......+.. |...  |.+++| +|+++++++++.|+.|++||++         
T Consensus       122 ~~i~iwd~~~~~-------------~~~~~~~~~~~h~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  185 (377)
T 3dwl_C          122 RVISVCYFEQEN-------------DWWVSKHLKRPLRST--ILSLDW-HPNNVLLAAGCADRKAYVLSAYVRDVDAKPE  185 (377)
T ss_dssp             SCEEECCC------------------CCCCEEECSSCCSC--EEEEEE-CTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred             CeEEEEEECCcc-------------cceeeeEeecccCCC--eEEEEE-cCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence            999999998761             1124667776 7766  999997 9999999999999999999985         


Q ss_pred             ---------CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-----CCCCCCCcccceeeccccCCC
Q 023246          152 ---------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGRED  217 (285)
Q Consensus       152 ---------~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~  217 (285)
                               .++++..+ .|...|.+++|+|++++|++++.|+.|++||++.+.     +..+..|...+..+.+ .+++
T Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~  263 (377)
T 3dwl_C          186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW-ANES  263 (377)
T ss_dssp             SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE-EETT
T ss_pred             ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE-cCCC
Confidence                     34556666 899999999999999999999999999999998765     4566677777776655 4556


Q ss_pred             ceEEEeCCCCeEEEEEec
Q 023246          218 HSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~  235 (285)
                      .++++++.++.+ +|+..
T Consensus       264 ~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          264 AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEEEESSSSEE-EECCC
T ss_pred             CEEEEEcCCcEE-EEEeC
Confidence            778888766665 77655

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.2e-30  Score=226.78  Aligned_cols=237  Identities=14%  Similarity=0.141  Sum_probs=189.5

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s~   79 (285)
                      +.++|++++|+|++ .+|++|+.||+|+|||+..+..             .....+.+|..+|++++|+|+  +++|+++
T Consensus         8 H~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~-------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~   73 (753)
T 3jro_A            8 HNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHEGPVWRVDWAHPKFGTILASC   73 (753)
T ss_dssp             CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred             CcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCC-------------ccceeccCCcCceEEEEecCCCCCCEEEEE
Confidence            46789999999986 8999999999999999984431             122223789999999999988  8888886


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--CcEEEEecCCCeEEEEecCCCc--
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGK--  154 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~v~vwd~~~~~--  154 (285)
                       .||.|++||+.++.              ......+..|...  |.+++| +|+  ++++++|+.||.|++||++++.  
T Consensus        74 s~Dg~I~vwd~~~~~--------------~~~~~~~~~h~~~--V~~v~~-sp~~~~~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           74 SYDGKVLIWKEENGR--------------WSQIAVHAVHSAS--VNSVQW-APHEYGPLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             ETTSCEEEEEEETTE--------------EEEEEEECCCSSC--EEEEEE-CCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred             eCCCeEEEEECCCCc--------------ccccccccCCCCC--eEEEEE-CCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence             59999999998760              0155667778866  999997 998  9999999999999999998773  


Q ss_pred             eEEEEecccccceEeEEcC-------------CCCeEEEEecCCcEEEEcCCCCC-----CCCCCCCcccceeeccccCC
Q 023246          155 LVRLMVGDRHVVNQLEPHP-------------HIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNAEKIMKANKQGRE  216 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p-------------~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~  216 (285)
                      ....+.+|...|.+++|+|             ++.++++++.||.|++||++...     ...+.+|...+..+.+....
T Consensus       137 ~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~  216 (753)
T 3jro_A          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (753)
T ss_dssp             CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC
Confidence            4456678999999999999             58899999999999999997653     24566788888777664433


Q ss_pred             --CceEEEeCCCCeEEEEEeccccc---------------ceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          217 --DHSRITLTPDVIMHVLRLQRRQT---------------LAYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       217 --~~~~~~~s~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                        +.++++++.||.|++||+...+.               +..+.+.+++..+.....+|.|+++++..+
T Consensus       217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence              78999999999999999987531               112356667777777777888988887743

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=1.3e-29  Score=207.17  Aligned_cols=222  Identities=13%  Similarity=0.026  Sum_probs=172.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|.+++|+|++ .+|++|+.|+.|++||+..++...           ........|...|.+++|+|++++|+++ .|
T Consensus        96 ~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           96 NRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW-----------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE-----------EEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcce-----------eeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            4679999999975 899999999999999998765110           1223336789999999999999998886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCC--CCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSL--SPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      +.|++||+...........  ........+.+..+..|...  +.+++| +|+++++++++.|+.|++||+++++++..+
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVCF-SANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEEE-CSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCe--EEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            9999999753311000000  00011223566777777766  999997 999999999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC--CC--------------------------------C-------C
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP--TD--------------------------------F-------P  198 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~--~~--------------------------------~-------~  198 (285)
                      ..|...|.+++|+|++.+++++ .|+.|++|+++.  +.                                .       .
T Consensus       241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (372)
T 1k8k_C          241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA  319 (372)
T ss_dssp             ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred             ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccc
Confidence            9999999999999999888877 899999999876  31                                0       2


Q ss_pred             CC-CCCcccceeeccccCCC---ceEEEeCCCCeEEEEEecccccc
Q 023246          199 PL-PDNAEKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       199 ~~-~~~~~~~~~~~~~~~~~---~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      .+ .+|...+..+.+...++   .++++++.||.|++|++++.+.+
T Consensus       320 ~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          320 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             cccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence            22 36788887777655655   79999999999999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=211.43  Aligned_cols=238  Identities=12%  Similarity=0.063  Sum_probs=167.1

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCC-------c--CCCCCcccc------cccccCCCCCcceEEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-------I--SSDTPVDTF------CPRHLIGKNNIHITGLA   68 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-------~--~~~~~~~~~------~~~~~~~~h~~~v~~i~   68 (285)
                      ..|.+++|+||| .++|+++.|++|+  |...++.+..       .  ...+....+      ....+...|...|.+++
T Consensus        16 ~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va   92 (588)
T 2j04_A           16 DWKNNLTWARDG-TLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK   92 (588)
T ss_dssp             SSSCCEEECTTS-CEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred             ccEEEEEECCCC-CEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence            578999999986 9999999999998  7655543310       0  000001111      11122125688999999


Q ss_pred             EecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC---ceeeeeEEEecCCCcEEEEecCCCe
Q 023246           69 YSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMSGSDCGH  144 (285)
Q Consensus        69 ~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~  144 (285)
                      |||+|++||++ .||.|++|+..                  ..+..+. |..   ...+.+++| +|+|++|++|+.||+
T Consensus        93 wSPdG~~LAs~s~dg~V~iwd~~------------------~~l~~l~-~~~~~~~~sv~svaf-SPDG~~LAsgs~DGt  152 (588)
T 2j04_A           93 PSPIDDWMAVLSNNGNVSVFKDN------------------KMLTNLD-SKGNLSSRTYHCFEW-NPIESSIVVGNEDGE  152 (588)
T ss_dssp             ECSSSSCEEEEETTSCEEEEETT------------------EEEEECC-CSSCSTTTCEEEEEE-CSSSSCEEEEETTSE
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCC------------------ceeeecc-CCCccccccEEEEEE-cCCCCEEEEEcCCCE
Confidence            99999999995 59999999953                  2444444 442   123899997 999999999999999


Q ss_pred             EEEEecCCCce-------EEEE----ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC----C-CCCcccce
Q 023246          145 LFIWKKKGGKL-------VRLM----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----L-PDNAEKIM  208 (285)
Q Consensus       145 v~vwd~~~~~~-------~~~~----~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----~-~~~~~~~~  208 (285)
                      |++||+.++..       +.++    .+|...|.+++|+|++  +++++.|++|++|++.+....+    + .+|...+.
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence            99999998753       6776    5677899999999999  8889999999999998877532    4 35666777


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEecccccceeE-eeeccccccCC-CCCcCeEEEeecCCCC
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR-ERRYNAADFES-DEEEGETYLLGFSDSD  270 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~-~~~~~~v~~~~~~~~~  270 (285)
                      .+.+.   +..+++++ ++.|++||+..++..... .+......++. +++++...++.+++|.
T Consensus       231 svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~  290 (588)
T 2j04_A          231 DLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY  290 (588)
T ss_dssp             CEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred             EEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence            77664   35777776 699999999887663322 33322333333 2344445555555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.8e-29  Score=205.78  Aligned_cols=227  Identities=12%  Similarity=0.120  Sum_probs=181.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .+.+++|++   ..+++++.|+.|++||+.+++              ........|...|++++|+|++++|+++ .|+.
T Consensus        95 ~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  157 (401)
T 4aez_A           95 YLNLLDWSN---LNVVAVALERNVYVWNADSGS--------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGL  157 (401)
T ss_dssp             TCBCEEECT---TSEEEEEETTEEEEEETTTCC--------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEEeecC---CCEEEEECCCeEEEeeCCCCc--------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCe
Confidence            355678877   346778899999999999886              2233324588999999999999999886 5999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC-CCceEEEEecc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGD  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~h  162 (285)
                      |++||+.++                +.+..+.+|...  |.+++|   +++++++++.||.|++||++ ....+..+.+|
T Consensus       158 i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          158 VDIYDVESQ----------------TKLRTMAGHQAR--VGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             EEEEETTTC----------------CEEEEECCCSSC--EEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EEEEECcCC----------------eEEEEecCCCCc--eEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            999999887                678888888876  999996   46799999999999999998 56678888999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeC--CCCeEEEEEeccccc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLT--PDVIMHVLRLQRRQT  239 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s--~d~~i~vwd~~~~~~  239 (285)
                      .+.|.+++|+|++++|++++.|+.|++||++.+.. ..+..|...+..+.+......++++++  .|+.|++||+.+++.
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            99999999999999999999999999999987653 456667777877777555566777765  799999999988766


Q ss_pred             ceeE---------eeeccccccCC--CCCcCeEEEeecCCC
Q 023246          240 LAYR---------ERRYNAADFES--DEEEGETYLLGFSDS  269 (285)
Q Consensus       240 ~~~~---------~~~~~~~~~~~--~~~~~~v~~~~~~~~  269 (285)
                      +..+         .+.+++..+..  +..++.+.+++...+
T Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            5544         34455555555  445667777776553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-29  Score=207.22  Aligned_cols=241  Identities=16%  Similarity=0.255  Sum_probs=178.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEc----cCCcc------cCCcCCCCCcccccccccCCCCCcceEEEEEecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDI----RKCHW------YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT   72 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~   72 (285)
                      ..+|++++|+|++..+||+|+.||.|++|++    .+++.      ...+..     .+.......+|...|++++|+|+
T Consensus        45 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           45 LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-----PFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-----CCCCC------CBCEEEEEECTT
T ss_pred             cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-----cccccccccCCCCceEEEEEcCC
Confidence            3689999999986339999999999999999    76652      111000     00001111347889999999999


Q ss_pred             CCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           73 SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        73 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                      +++|+++ .|+.|++|+. .+                +.+..+..|...  |.+++| +|+++++++++.|+.|++||+.
T Consensus       120 ~~~l~~~~~dg~i~i~~~-~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWNK-TG----------------ALLNVLNFHRAP--IVSVKW-NKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             SSEEEEEETTSCEEEEET-TS----------------CEEEEECCCCSC--EEEEEE-CTTSSEEEEEETTCCEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEeC-CC----------------CeeeeccCCCcc--EEEEEE-CCCCCEEEEEecCCeEEEEECC
Confidence            9999886 5999999994 33                577788888866  999997 9999999999999999999998


Q ss_pred             CCceEE--------------------------------------------------------EEecccccceEeEEcCCC
Q 023246          152 GGKLVR--------------------------------------------------------LMVGDRHVVNQLEPHPHI  175 (285)
Q Consensus       152 ~~~~~~--------------------------------------------------------~~~~h~~~v~~~~~~p~~  175 (285)
                      +++.+.                                                        .+..|...|.+++|+|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            766543                                                        233567789999999999


Q ss_pred             CeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE----------e
Q 023246          176 PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR----------E  244 (285)
Q Consensus       176 ~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~----------~  244 (285)
                      ++|++++.|+.|++||++... ...+..|...+..+.+.. ++ .+++++.|+.|++||+++.+.+..+          .
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  337 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR  337 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE
Confidence            999999999999999998765 355666777777666543 33 8999999999999999876554433          3


Q ss_pred             eeccccccCCCCCcCeEEEeecCCCC
Q 023246          245 RRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      +.+++..+.....++.+.++++..+.
T Consensus       338 ~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          338 ISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EcCCCCEEEEEECCCeEEEEECCCCc
Confidence            45555566666666777777765443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=210.75  Aligned_cols=214  Identities=10%  Similarity=0.162  Sum_probs=167.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      ..+|.+++|+|++ .+|++++.|+.|++||+.+++....+.................+...+.+++|+|++.+++.+.++
T Consensus       149 ~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  227 (425)
T 1r5m_A          149 RAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG  227 (425)
T ss_dssp             CSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGG
T ss_pred             CccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC
Confidence            5689999999975 899999999999999999886433222111000000000001112228899999997766667899


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      .|++||+...                +.+..+..|...  |.+++| +|+++++++++.|+.|++||+++++.+..+..|
T Consensus       228 ~i~~~d~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  288 (425)
T 1r5m_A          228 AIFVYQITEK----------------TPTGKLIGHHGP--ISVLEF-NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH  288 (425)
T ss_dssp             CEEEEETTCS----------------SCSEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEECSSSBSCSEEECCC
T ss_pred             eEEEEEcCCC----------------ceeeeeccCCCc--eEEEEE-CCCCCEEEEEcCCCEEEEEECCCCccceEecCC
Confidence            9999999887                677888888866  999997 999999999999999999999999999999999


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ...|.+++|+|++ ++++++.|+.|++||++.+.. ..+..+...+..+.+ .+++.++++++.|+.|++||+...+
T Consensus       289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI-SQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEE-CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEE-cCCCCEEEEEECCCeEEEEECCCCc
Confidence            9999999999999 999999999999999987653 445556666655544 4567789999999999999998776

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3e-29  Score=206.91  Aligned_cols=212  Identities=9%  Similarity=0.060  Sum_probs=167.1

Q ss_pred             CccceeEEEEcCC---CC---cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCC-----CcceEEEEEe
Q 023246            2 NSIRLNAIVIDPR---NP---NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-----NIHITGLAYS   70 (285)
Q Consensus         2 ~~~~v~~~~~s~~---~~---~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~i~~s   70 (285)
                      ...+|++++|+|+   ++   .+|++++.||.|++||+.+++....         .....+ ..|     ...|.+++|+
T Consensus        61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~v~~~~~~  130 (397)
T 1sq9_A           61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK---------VIFEKL-DLLDSDMKKHSFWALKWG  130 (397)
T ss_dssp             CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC---------EEEEEE-CCSCTTGGGSCEEEEEEE
T ss_pred             CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc---------ccceee-cccccccCCCcEEEEEEe
Confidence            3568999999995   25   7999999999999999997762000         002222 556     5899999999


Q ss_pred             ----cCCCE-EEEe-cCCcEEEEEcCC------CCCCCCCCCCCccccCCCCce-----Eeec-------ccCceeeeeE
Q 023246           71 ----NTSEL-LISY-NDELVYLFEKNM------GLGPSPLSLSPEDLQKREEPQ-----VYSG-------HRNSQTVKGV  126 (285)
Q Consensus        71 ----~~~~~-l~s~-~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~i~~~  126 (285)
                          |++.+ |+++ .|+.|++||+..      .                +.+.     .+.+       |...  +.++
T Consensus       131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~--i~~~  192 (397)
T 1sq9_A          131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS----------------LTLNWSPTLELQGTVESPMTPSQF--ATSV  192 (397)
T ss_dssp             CCC----CEEEEEEETTSCEEEEEEESSSSHHHH----------------TTTCCCCEEEEEEEECCSSSSCCC--CCEE
T ss_pred             eccCCCCceEEEEEeCCCcEEEEeCCcccccccc----------------ceeeccCcceeeeeeccccCCCCC--ceEE
Confidence                99998 8886 599999999987      4                3333     5643       5544  9999


Q ss_pred             EEecCCCcEEEEecCCCeEEEEecCCCceEEEEec---c---cccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCC-
Q 023246          127 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---D---RHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTD-  196 (285)
Q Consensus       127 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---h---~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~-  196 (285)
                      +| +|++ ++++++.||.|++||+++++.+..+..   |   ...|.+++|+|++++|++++.|   +.|++||++..+ 
T Consensus       193 ~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~  270 (397)
T 1sq9_A          193 DI-SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  270 (397)
T ss_dssp             EE-CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             EE-CCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence            97 9999 999999999999999999999999998   9   9999999999999999999999   999999998776 


Q ss_pred             CCCCCC-------------CcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          197 FPPLPD-------------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       197 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +..+..             |...+..+.+ .+++.++++++.|+.|++||+.+.+.+..+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          271 IGSLSVPTHSSQASLGEFAHSSWVMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEECBC--------CCBSBSSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cceeccCcccccccccccccCCcEEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            344555             6666666655 4567789999999999999998776655544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=211.93  Aligned_cols=218  Identities=14%  Similarity=0.170  Sum_probs=163.2

Q ss_pred             cceeEEEEcCCCC-cEEEEeeCCCcEEEEEccCCcccCC---cC-------CCCCccccc---------------ccccC
Q 023246            4 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSP---IS-------SDTPVDTFC---------------PRHLI   57 (285)
Q Consensus         4 ~~v~~~~~s~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~---~~-------~~~~~~~~~---------------~~~~~   57 (285)
                      .+|++++|+|++. .+|++++.|++|++||+.+++....   ..       ....+..+.               ...+.
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            6799999999743 6899999999999999986442100   00       000000000               11224


Q ss_pred             CCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCce-------EeecccCceeeeeEEEec
Q 023246           58 GKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-------VYSGHRNSQTVKGVNFFG  130 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~~~  130 (285)
                      .+|...|++++|+|++++|+++.|+.|++||+....               +...       .+..|...  |.+++| +
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~--v~~~~~-~  235 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITD---------------RSFNIVDIKPANMEELTEV--ITAAEF-H  235 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEE---------------EEEEEEECCCSSGGGCCCC--EEEEEE-C
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCC---------------ceeeeeecccccccccCcc--eEEEEE-C
Confidence            689999999999999999999899999999998431               2222       24567765  999997 9


Q ss_pred             CCC-cEEEEecCCCeEEEEecCCCce----EEEEecccc------------cceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          131 PND-EYVMSGSDCGHLFIWKKKGGKL----VRLMVGDRH------------VVNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       131 ~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~h~~------------~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                      |++ +++++|+.||.|++||+++++.    +..+..|..            .|.+++|+|++++|++++. +.|++||++
T Consensus       236 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          236 PNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             CCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            998 9999999999999999998887    788888876            8999999999999999998 999999997


Q ss_pred             C-CC-CCCCCCCccccee--------------eccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          194 P-TD-FPPLPDNAEKIMK--------------ANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       194 ~-~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      . +. +..+..|......              ...+.+++.++++++.|+.|++||+.+++.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            5 44 4555555432110              0223556778999999999999999887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.8e-29  Score=208.21  Aligned_cols=210  Identities=11%  Similarity=0.092  Sum_probs=165.8

Q ss_pred             ccceeEEEEc----CCCCcE-EEEeeCCCcEEEEEccC------CcccCCcCCCCCccccc-ccccCCCCCcceEEEEEe
Q 023246            3 SIRLNAIVID----PRNPNY-FAVGGSDEYARVYDIRK------CHWYSPISSDTPVDTFC-PRHLIGKNNIHITGLAYS   70 (285)
Q Consensus         3 ~~~v~~~~~s----~~~~~~-l~tg~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~i~~s   70 (285)
                      ...|.+++|+    |++ .+ |++|+.||.|++||+.+      ++.....    +...+. .......|...|.+++|+
T Consensus       121 ~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~  195 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWS----PTLELQGTVESPMTPSQFATSVDIS  195 (397)
T ss_dssp             GSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC----CEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred             CCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeecc----CcceeeeeeccccCCCCCceEEEEC
Confidence            5789999999    975 77 99999999999999997      5422100    000000 000114578899999999


Q ss_pred             cCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec---c---cCceeeeeEEEecCCCcEEEEecCC-
Q 023246           71 NTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---H---RNSQTVKGVNFFGPNDEYVMSGSDC-  142 (285)
Q Consensus        71 ~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~i~~~~~~~~~~~~l~~~~~d-  142 (285)
                      |++ +|+++. |+.|++||+.+.                +.+..+..   |   ...  +.+++| +|++++|++++.| 
T Consensus       196 ~~~-~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~h~~~~~~--i~~i~~-~~~~~~l~~~~~d~  255 (397)
T 1sq9_A          196 ERG-LIATGFNNGTVQISELSTL----------------RPLYNFESQHSMINNSNS--IRSVKF-SPQGSLLAIAHDSN  255 (397)
T ss_dssp             TTS-EEEEECTTSEEEEEETTTT----------------EEEEEEECCC---CCCCC--EEEEEE-CSSTTEEEEEEEET
T ss_pred             CCc-eEEEEeCCCcEEEEECCCC----------------ceeEEEeccccccccCCc--cceEEE-CCCCCEEEEEecCC
Confidence            999 888864 999999999877                67788887   7   655  999997 9999999999999 


Q ss_pred             --CeEEEEecCCCceEEEEec-------------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCC-----
Q 023246          143 --GHLFIWKKKGGKLVRLMVG-------------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-----  201 (285)
Q Consensus       143 --g~v~vwd~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~-----  201 (285)
                        +.|++||+++++.+..+..             |...|.+++|+|++++|++++.|+.|++||++..+ +..+.     
T Consensus       256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  335 (397)
T 1sq9_A          256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD  335 (397)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG
T ss_pred             CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCc
Confidence              9999999999999999998             99999999999999999999999999999998765 34444     


Q ss_pred             -CC---------------cccceeeccccCCC---------ceEEEeCCCCeEEEEEeccc
Q 023246          202 -DN---------------AEKIMKANKQGRED---------HSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       202 -~~---------------~~~~~~~~~~~~~~---------~~~~~~s~d~~i~vwd~~~~  237 (285)
                       .|               ...+..+.+.....         .++++++.|+.|++|++.++
T Consensus       336 ~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          336 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence             45               66676666543321         68999999999999999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-28  Score=201.12  Aligned_cols=209  Identities=12%  Similarity=0.155  Sum_probs=165.7

Q ss_pred             CccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEE
Q 023246            2 NSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s   78 (285)
                      +..+|++++|+|+ ++.+|++|+.||.|++||+.+++.             ........|...|.+++|+|+  +.+|++
T Consensus        54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  120 (379)
T 3jrp_A           54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-------------SQIAVHAVHSASVNSVQWAPHEYGPLLLV  120 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-------------eEeeeecCCCcceEEEEeCCCCCCCEEEE
Confidence            3568999999975 148999999999999999998752             122223678999999999999  888888


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-------------CCcEEEEecCCCe
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-------------NDEYVMSGSDCGH  144 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~l~~~~~dg~  144 (285)
                      + .|+.|++||+....              ......+..|...  |.+++| +|             +++++++++.||.
T Consensus       121 ~~~d~~i~v~d~~~~~--------------~~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~  183 (379)
T 3jrp_A          121 ASSDGKVSVVEFKENG--------------TTSPIIIDAHAIG--VNSASW-APATIEEDGEHNGTKESRKFVTGGADNL  183 (379)
T ss_dssp             EETTSEEEEEECCTTS--------------CCCEEEEECCTTC--EEEEEE-CCCC----------CTTCEEEEEETTSC
T ss_pred             ecCCCcEEEEecCCCC--------------ceeeEEecCCCCc--eEEEEE-cCccccccccccCCCCCCEEEEEeCCCe
Confidence            5 59999999998751              0233455677766  999997 88             6999999999999


Q ss_pred             EEEEecCCCc----eEEEEecccccceEeEEcCC---CCeEEEEecCCcEEEEcCCCCC------CCCCCCCcccceeec
Q 023246          145 LFIWKKKGGK----LVRLMVGDRHVVNQLEPHPH---IPMFATCGIEKTVKLWAPMPTD------FPPLPDNAEKIMKAN  211 (285)
Q Consensus       145 v~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~---~~~l~t~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~  211 (285)
                      |++||+++++    .+..+.+|...|.+++|+|+   +.+|++++.||.|++||++...      ......+...+..+.
T Consensus       184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence            9999998765    44677789999999999999   8999999999999999997753      222333555565554


Q ss_pred             cccCCCceEEEeCCCCeEEEEEecccccce
Q 023246          212 KQGREDHSRITLTPDVIMHVLRLQRRQTLA  241 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~  241 (285)
                      + .+++.++++++.||.|++|++.......
T Consensus       264 ~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          264 W-SLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             E-CSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             E-cCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence            4 5667789999999999999998654433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7e-29  Score=200.49  Aligned_cols=216  Identities=11%  Similarity=0.116  Sum_probs=166.3

Q ss_pred             CccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEE
Q 023246            2 NSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s   78 (285)
                      +..+|++++|+|. ++.+|++|+.||+|++||+.+++......      .+........|...|.+++|+|+  +.+|++
T Consensus        56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC------SEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc------CcceeeeecccCCceeEEEEcCCCCCcEEEE
Confidence            3568999999994 24899999999999999998775321100      00112223689999999999999  888888


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-------------cccCceeeeeEEEecCC---CcEEEEecC
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-------------GHRNSQTVKGVNFFGPN---DEYVMSGSD  141 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~---~~~l~~~~~  141 (285)
                      + .|+.|++||+.+..                .+..+.             .+...  +.+++| +|+   +.++++++.
T Consensus       130 ~~~dg~v~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~p~~~~~~~l~~~~~  190 (351)
T 3f3f_A          130 LGNDGILRLYDALEPS----------------DLRSWTLTSEMKVLSIPPANHLQS--DFCLSW-CPSRFSPEKLAVSAL  190 (351)
T ss_dssp             EETTCEEEEEECSSTT----------------CTTCCEEEEEEESCSCCCSSCSCC--CEEEEE-CCCSSSCCEEEEEET
T ss_pred             ecCCCcEEEecCCChH----------------HhccccccccccccccccCCcccc--eeEEEe-ccCCCCCcEEEEecC
Confidence            5 59999999998762                222211             34433  899997 886   899999999


Q ss_pred             CCeEEEEecCCCce--EEEEecccccceEeEEcCCC----CeEEEEecCCcEEEEcCCCCC-------------------
Q 023246          142 CGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPTD-------------------  196 (285)
Q Consensus       142 dg~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~----~~l~t~~~d~~i~iwd~~~~~-------------------  196 (285)
                      ++.+.+|+...++.  +..+.+|...|.+++|+|++    ++|++++.||.|++||++...                   
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
T 3f3f_A          191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSA  270 (351)
T ss_dssp             TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred             CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCc
Confidence            99998888887765  67778899999999999998    789999999999999986531                   


Q ss_pred             ----------------------------CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          197 ----------------------------FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       197 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                                                  +..+.+|...+..+.+ .+++.++++++.|+.|++|++...+.+..+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          271 DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW-NLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             --------------------CCSEEEEEEEEECTTSSCEEEEEE-CSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccccccccccccccceeeeecccccccEEEEEecccccEEEEEE-cCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                                        2234456666666655 456678999999999999999987665444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.6e-29  Score=208.44  Aligned_cols=220  Identities=9%  Similarity=0.048  Sum_probs=168.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc---ccCCcCCCCCc--------------------------------
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH---WYSPISSDTPV--------------------------------   48 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~---~~~~~~~~~~~--------------------------------   48 (285)
                      .++.+++|+|++ .+|+++ .++.|++||+.+++   .+..+......                                
T Consensus         5 ~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            588999999986 666555 57899999999887   43333211100                                


Q ss_pred             -------ccccccccCCCCCcceEEEEEecCCCEE-EEe-cCCcEEEEEcC--CCCCCCCCCCCCccccCCCCceEeecc
Q 023246           49 -------DTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKN--MGLGPSPLSLSPEDLQKREEPQVYSGH  117 (285)
Q Consensus        49 -------~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (285)
                             ...........|...|++++|+|++++| +++ .|+.|++||+.  .+                +.+..+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~----------------~~~~~~~~~  146 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK----------------NVLKLRKRF  146 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS----------------SCEEEEEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC----------------ceeeeeecc
Confidence                   0000001113567789999999999986 776 49999999998  65                566777644


Q ss_pred             cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE----EEecccccceEeEEcCC---CCeEEEEecCCcEEEE
Q 023246          118 RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR----LMVGDRHVVNQLEPHPH---IPMFATCGIEKTVKLW  190 (285)
Q Consensus       118 ~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~----~~~~h~~~v~~~~~~p~---~~~l~t~~~d~~i~iw  190 (285)
                      .....|.+++| +|++++|++++.+|.|++|++.+++...    .+.+|...|.+++|+|+   +++|++++.|+.|++|
T Consensus       147 ~~~~~v~~~~~-sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vw  225 (450)
T 2vdu_B          147 CFSKRPNAISI-AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKIS  225 (450)
T ss_dssp             ECSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEE
T ss_pred             cCCCCceEEEE-cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEE
Confidence            33334999997 9999999999999999999998776543    77789999999999999   9999999999999999


Q ss_pred             cCCCCCC-CC-CCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          191 APMPTDF-PP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       191 d~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      |++.+.. .. +.+|...+..+.+.  ++.++++++.|+.|++||+.+++.+..+.
T Consensus       226 d~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          226 HYPQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EESCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            9987764 33 55687877777664  77899999999999999999887655543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=9.4e-29  Score=230.81  Aligned_cols=229  Identities=15%  Similarity=0.229  Sum_probs=183.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .+|++|+.||+|++||+.+++              ....+ .+|...|.+++|+|++++|+++ .|
T Consensus       615 ~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~~--------------~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          615 TDAVYHACFSQDG-QRIASCGADKTLQVFKAETGE--------------KLLDI-KAHEDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccEEEEEECCCC-CEEEEEeCCCeEEEEECCCCC--------------EEEEe-ccCCCCEEEEEEecCCCEEEEEeCC
Confidence            5689999999985 899999999999999999886              33333 6899999999999999999996 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      +.|++||+.++                +.+..+.+|...  |.+++| ++  ++.++++|+.|+.|++||+++++++..+
T Consensus       679 ~~v~vwd~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  739 (1249)
T 3sfz_A          679 KKVKIWDSATG----------------KLVHTYDEHSEQ--VNCCHF-TNKSNHLLLATGSNDFFLKLWDLNQKECRNTM  739 (1249)
T ss_dssp             SEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE-CSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred             CeEEEEECCCC----------------ceEEEEcCCCCc--EEEEEE-ecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence            99999999988                788899999877  999997 77  5668999999999999999999999999


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CC-------------------------C-------------
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PP-------------------------L-------------  200 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~-------------------------~-------------  200 (285)
                      .+|...|.+++|+|+++++++++.||.|++||++.+.. ..                         +             
T Consensus       740 ~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            99999999999999999999999999999999865421 00                         0             


Q ss_pred             -----------------CCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee----------EeeeccccccC
Q 023246          201 -----------------PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFE  253 (285)
Q Consensus       201 -----------------~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~----------~~~~~~~~~~~  253 (285)
                                       .+|...+.... ..+++..+++++.|+.|++||+.++..+..          +.+.+++..+.
T Consensus       820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          820 KVLLFDIHTSGLLAEIHTGHHSTIQYCD-FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSCCCEEE-ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cEEEEEecCCCceeEEcCCCCCceEEEE-EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE
Confidence                             01222222222 234566888999999999999887654433          34555666666


Q ss_pred             CCCCcCeEEEeecC
Q 023246          254 SDEEEGETYLLGFS  267 (285)
Q Consensus       254 ~~~~~~~v~~~~~~  267 (285)
                      ....++.+.+++..
T Consensus       899 s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          899 TASDDQTIRVWETK  912 (1249)
T ss_dssp             EEETTSCEEEEEHH
T ss_pred             EEeCCCeEEEEEcc
Confidence            66666777777654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-28  Score=198.34  Aligned_cols=244  Identities=11%  Similarity=0.117  Sum_probs=186.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +...|++++|+|++ .+|++++.||.|++||+.+++.              ...+ . |...|.+++|+|++++++++ .
T Consensus        73 h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--------------~~~~-~-~~~~v~~~~~~~~~~~l~~~~~  135 (369)
T 3zwl_B           73 HTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQC--------------VATW-K-SPVPVKRVEFSPCGNYFLAILD  135 (369)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCE--------------EEEE-E-CSSCEEEEEECTTSSEEEEEEC
T ss_pred             cCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE--------------EEEe-e-cCCCeEEEEEccCCCEEEEecC
Confidence            35689999999975 8999999999999999998863              2222 2 67789999999999988885 4


Q ss_pred             C-----CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-Cc
Q 023246           81 D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GK  154 (285)
Q Consensus        81 d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~  154 (285)
                      +     +.|++||+.......     ............+..+.....+.+++| +|+++++++++.||.|++||+++ ++
T Consensus       136 ~~~~~~g~i~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~  209 (369)
T 3zwl_B          136 NVMKNPGSINIYEIERDSATH-----ELTKVSEEPIHKIITHEGLDAATVAGW-STKGKYIIAGHKDGKISKYDVSNNYE  209 (369)
T ss_dssp             CBTTBCCEEEEEEEEECTTTC-----CEEEECSSCSEEEECCTTCCCEEEEEE-CGGGCEEEEEETTSEEEEEETTTTTE
T ss_pred             CccCCCCEEEEEEecCCccce-----eecccccceeeeccCCcCccceeEEEE-cCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            6     999999998662110     000111124455566665334999997 99999999999999999999998 78


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCC-------
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV-------  227 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-------  227 (285)
                      .+..+..|...|.+++|+|++++|++++.|+.|++||++.........+...+.... ..+.+.++++++.++       
T Consensus       210 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~  288 (369)
T 3zwl_B          210 YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV-ITPLKEFIILGGGQEAKDVTTT  288 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE-ECSSSSEEEEEECCC-------
T ss_pred             eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEE-ecCCCceEEEeecCCCceEEEE
Confidence            888999999999999999999999999999999999998876432222444444443 355667788888777       


Q ss_pred             -------eEEEEEeccccccee----------EeeeccccccCCCCCcCeEEEeecCCC
Q 023246          228 -------IMHVLRLQRRQTLAY----------RERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       228 -------~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                             .+++||+...+.+..          +.+.+++..++....++.|.++++..+
T Consensus       289 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          289 SANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence                   899999887655443          345666667777777788888887654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.7e-28  Score=204.80  Aligned_cols=211  Identities=14%  Similarity=0.234  Sum_probs=167.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~-~   80 (285)
                      ..+|.+++|+|++..+|++|+.||.|++|++.++.....        .........+|...|.+++|+| ++.+|+++ .
T Consensus       181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG--------EEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            467899999998745999999999999999987532100        0011223368999999999999 56688775 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCC-CceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~-~~~~~~  158 (285)
                      |+.|++||++...             ..+.+..+..|...  |.+++| +|+++ ++++|+.||.|++||+++ .+++..
T Consensus       253 dg~i~i~d~~~~~-------------~~~~~~~~~~~~~~--v~~i~~-~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~  316 (430)
T 2xyi_A          253 DQKLMIWDTRNNN-------------TSKPSHTVDAHTAE--VNCLSF-NPYSEFILATGSADKTVALWDLRNLKLKLHS  316 (430)
T ss_dssp             TSEEEEEETTCSC-------------SSSCSEEEECCSSC--EEEEEE-CSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred             CCeEEEEECCCCC-------------CCcceeEeecCCCC--eEEEEe-CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence            9999999998651             11356677788866  999997 89887 688999999999999997 567888


Q ss_pred             EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCC---------------CCCCCCCCcccceeeccccCCCceEEE
Q 023246          159 MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT---------------DFPPLPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                      +..|...|.+++|+|+++ +|++++.|+.|++||++..               .+..+.+|...+..+.+......++++
T Consensus       317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence            999999999999999996 5999999999999999752               223455677777777765444448999


Q ss_pred             eCCCCeEEEEEeccc
Q 023246          223 LTPDVIMHVLRLQRR  237 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~  237 (285)
                      ++.|+.|++|++...
T Consensus       397 ~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          397 VSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EETTSEEEEEEECHH
T ss_pred             EECCCCEEEeEcccc
Confidence            999999999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9e-29  Score=201.56  Aligned_cols=209  Identities=13%  Similarity=0.155  Sum_probs=159.7

Q ss_pred             CccceeEEEEcCCC--CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            2 NSIRLNAIVIDPRN--PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      +...|++++|+|++  +.+|++|+.||.|++||+.+...             .....+.+|...|++++|+|++++|+++
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------TIPKAQQMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-------------EEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-------------eeEEEeccccCCEEEEEECcCCCEEEEE
Confidence            45789999999984  58999999999999999987321             2223336799999999999999999886


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEe-cCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                       .|+.|++||+.++                +. ..+..|...  |.+++|. +++++++++++.||.|++||+++++.+.
T Consensus       105 ~~dg~v~iwd~~~~----------------~~-~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A          105 SCDKTAKMWDLSSN----------------QA-IQIAQHDAP--VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             ETTSEEEEEETTTT----------------EE-EEEEECSSC--EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred             cCCCcEEEEEcCCC----------------Cc-eeeccccCc--eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence             5999999999876                33 345667766  9999942 7899999999999999999999888766


Q ss_pred             EEeccc-----------------------------------------ccceEeEEcCCCCe----EEEEecCCcEEEEcC
Q 023246          158 LMVGDR-----------------------------------------HVVNQLEPHPHIPM----FATCGIEKTVKLWAP  192 (285)
Q Consensus       158 ~~~~h~-----------------------------------------~~v~~~~~~p~~~~----l~t~~~d~~i~iwd~  192 (285)
                      .+..|.                                         ..+.++++.++...    +++++.|+.|++|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          166 VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred             EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence            665432                                         22344444444433    999999999999999


Q ss_pred             CCCC----CCCCCCCcc------------cceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          193 MPTD----FPPLPDNAE------------KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       193 ~~~~----~~~~~~~~~------------~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      +...    ...+..|..            .+..+.+ .+++.++++++.||.|++||+.+.+.+..+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-HPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE-CTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEE-ecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            7753    334444444            4555544 556779999999999999999987666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-28  Score=198.77  Aligned_cols=236  Identities=8%  Similarity=-0.051  Sum_probs=164.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--CCCEEEEe-c
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY-N   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~s~-~   80 (285)
                      ..|.++.|+|.    +++++.|++|++|+..............     .......+|..+|.+++|+|  ++++|+++ .
T Consensus        77 ~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~  147 (343)
T 3lrv_A           77 PNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNK-----VLREIEVDSANEIIYMYGHNEVNTEYFIWADN  147 (343)
T ss_dssp             ECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCC-----EEEEEECCCSSCEEEEECCC---CCEEEEEET
T ss_pred             CCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcc-----eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC
Confidence            45677788884    9999999999999876432111111111     12222246778999999999  99999985 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE-EEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-~~~  159 (285)
                      |++|++||+.++                +....+..+.. ..+.+++| +|+++++++|+.||.|++||+++++.+ ..+
T Consensus       148 dg~i~~wd~~~~----------------~~~~~~~~~~~-~~i~~~~~-~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~  209 (343)
T 3lrv_A          148 RGTIGFQSYEDD----------------SQYIVHSAKSD-VEYSSGVL-HKDSLLLALYSPDGILDVYNLSSPDQASSRF  209 (343)
T ss_dssp             TCCEEEEESSSS----------------CEEEEECCCSS-CCCCEEEE-CTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred             CCcEEEEECCCC----------------cEEEEEecCCC-CceEEEEE-CCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence            999999999887                45444433322 23999997 999999999999999999999999987 788


Q ss_pred             ec-ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC---Cccccee-eccccCCCceEEEeCC-CCeEEEE
Q 023246          160 VG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---NAEKIMK-ANKQGREDHSRITLTP-DVIMHVL  232 (285)
Q Consensus       160 ~~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~~~~~~~-~~~~~~~~~~~~~~s~-d~~i~vw  232 (285)
                      .. |...|.+++|+|++.+|++++ |+.|++||++.... ..+..   +...+.. ...+.+++.++++++. |+.+++|
T Consensus       210 ~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~  288 (343)
T 3lrv_A          210 PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIY  288 (343)
T ss_dssp             CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEE
Confidence            87 999999999999999999999 55999999987753 33332   2222211 1223456778888887 9999999


Q ss_pred             Eeccccccee------Eeeec---cccccCCCCCcCeEEEeecC
Q 023246          233 RLQRRQTLAY------RERRY---NAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       233 d~~~~~~~~~------~~~~~---~~~~~~~~~~~~~v~~~~~~  267 (285)
                      ++........      +.+.+   +...+.....++.+.++-..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          289 KFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             EEcccccceEecCceeEecCccccccceeEEEecCCceEEEEec
Confidence            9976543222      12232   44455555555556555433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5.1e-29  Score=201.40  Aligned_cols=231  Identities=8%  Similarity=-0.054  Sum_probs=179.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-   79 (285)
                      +...|++++|+|++ .+|++|+.|+.|++|++.+++...           ..... .+|...|.+++|+|+++ +|+++ 
T Consensus        10 h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~-----------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A           10 PKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNV-----------DLLQS-LRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEE-----------EEEEE-EECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccc-----------cceee-eecCCceEEEEECCCCCcEEEEEc
Confidence            45789999999975 899999999999999998764100           11222 47899999999999999 88886 


Q ss_pred             cCCcEEEEEc-CCCCCCCCCCCCCccccCCCCceEeec--ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC----
Q 023246           80 NDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----  152 (285)
Q Consensus        80 ~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~----  152 (285)
                      .|+.|++||+ ..+                 ....+..  |...  |.+++| +| ++++++++.|+.|++||+++    
T Consensus        77 ~dg~i~~wd~~~~~-----------------~~~~~~~~~~~~~--v~~l~~-~~-~~~l~s~~~d~~i~iwd~~~~~~~  135 (342)
T 1yfq_A           77 VQGEILKVDLIGSP-----------------SFQALTNNEANLG--ICRICK-YG-DDKLIAASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             TTSCEEEECSSSSS-----------------SEEECBSCCCCSC--EEEEEE-ET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred             CCCeEEEEEeccCC-----------------ceEeccccCCCCc--eEEEEe-CC-CCEEEEEcCCCeEEEEcccccccc
Confidence            5999999999 765                 4466777  8766  999997 88 99999999999999999987    


Q ss_pred             -----CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC-CCCC---CCCCCcccceeeccccC-CCceEEE
Q 023246          153 -----GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDFP---PLPDNAEKIMKANKQGR-EDHSRIT  222 (285)
Q Consensus       153 -----~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~  222 (285)
                           ++++..+. |...|.+++|+|++  +++++.|+.|++||++. ....   ....+...+..+.+ .+ +..++++
T Consensus       136 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~~~l~~  211 (342)
T 1yfq_A          136 VIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL-LPKEQEGYAC  211 (342)
T ss_dssp             CEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE-CSGGGCEEEE
T ss_pred             cccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE-CCCCCCEEEE
Confidence                 66666666 88999999999987  99999999999999987 4421   22334555555544 44 6678999


Q ss_pred             eCCCCeEEEEEeccc------ccc-------------------eeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          223 LTPDVIMHVLRLQRR------QTL-------------------AYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~------~~~-------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ++.|+.+++|+++..      +..                   ..+.+.+++..+.....++.|++++...+.
T Consensus       212 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            999999999999765      222                   223445556666666677788888876554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=1.4e-28  Score=213.75  Aligned_cols=235  Identities=11%  Similarity=0.135  Sum_probs=183.4

Q ss_pred             ccc-eeEEEEcC--CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            3 SIR-LNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         3 ~~~-v~~~~~s~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      ... |++++|+|  ++ .+|++|+.||.|++||+.+++....      ... .....+..|..+|.+++|+|++++|+++
T Consensus        63 ~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~------~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           63 GSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNS------VEV-NVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             TTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTE------EEE-EEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCccccc------ccc-cccchhhcccccEEEEEEeCCCCEEEEe
Confidence            456 99999999  86 8999999999999999975510000      000 1122226789999999999999998886


Q ss_pred             c-C----CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCC
Q 023246           80 N-D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus        80 ~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~  153 (285)
                      . +    +.|++||  .+                +.+..+.+|...  |.+++| +|+++ .+++++.|+.|++||+.++
T Consensus       135 ~~~~~~~~~v~~~d--~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~l~~~~~d~~v~vwd~~~~  193 (615)
T 1pgu_A          135 GEGRDNFGVFISWD--SG----------------NSLGEVSGHSQR--INACHL-KQSRPMRSMTVGDDGSVVFYQGPPF  193 (615)
T ss_dssp             ECCSSCSEEEEETT--TC----------------CEEEECCSCSSC--EEEEEE-CSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             ccCCCCccEEEEEE--CC----------------CcceeeecCCcc--EEEEEE-CCCCCcEEEEEeCCCcEEEEeCCCc
Confidence            4 4    6888888  33                467778888876  999997 99987 8999999999999999999


Q ss_pred             ceEEEEecccc---cceEeEEcCC-CCeEEEEecCCcEEEEcCCCCCC-CCC-C---CCcccceeeccccCCCceEEEeC
Q 023246          154 KLVRLMVGDRH---VVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDF-PPL-P---DNAEKIMKANKQGREDHSRITLT  224 (285)
Q Consensus       154 ~~~~~~~~h~~---~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~s  224 (285)
                      +.+..+.+|..   .|.+++|+|+ +++|++++.|+.|++||++.++. ..+ .   .|...+..+.+.  ++.++++++
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~  271 (615)
T 1pgu_A          194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVG  271 (615)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEE
T ss_pred             ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEc
Confidence            99999999998   9999999999 99999999999999999987764 444 3   677777777665  777899999


Q ss_pred             CCCeEEEEEecccccceeEeee-------------ccccccCCCCCcCeEEEeecCC
Q 023246          225 PDVIMHVLRLQRRQTLAYRERR-------------YNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       225 ~d~~i~vwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      .|+.|++||+.+.+.+..+...             ++...+.....++.+++++...
T Consensus       272 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence            9999999999987665554332             1333444445556666666543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-28  Score=205.89  Aligned_cols=197  Identities=12%  Similarity=0.111  Sum_probs=154.9

Q ss_pred             ceeEEEEcCCCCcE-EEEeeCCCcEEEEEcc--CCcccCCcCCCCCcccccccccC-CCCCcceEEEEEecCCCEEEEe-
Q 023246            5 RLNAIVIDPRNPNY-FAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~-l~tg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      .|++++|+|++ .+ +++|+.||.|+|||+.  +++.              ...+. ..|...|.+++|+|++++|+++ 
T Consensus       104 ~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~--------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  168 (450)
T 2vdu_B          104 YIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNV--------------LKLRKRFCFSKRPNAISIAEDDTTVIIAD  168 (450)
T ss_dssp             CEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSC--------------EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCce--------------eeeeecccCCCCceEEEEcCCCCEEEEEe
Confidence            69999999987 56 5999999999999998  6652              22221 2567889999999999999886 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCC-CceEeecccCceeeeeEEEecCC---CcEEEEecCCCeEEEEecCCCce
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGSDCGHLFIWKKKGGKL  155 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~v~vwd~~~~~~  155 (285)
                      .++.|++|++....             ... ....+.+|...  |.+++| +|+   +++|++++.|+.|++||+++++.
T Consensus       169 ~~g~v~~~~~~~~~-------------~~~~~~~~~~~h~~~--v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          169 KFGDVYSIDINSIP-------------EEKFTQEPILGHVSM--LTDVHL-IKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             TTSEEEEEETTSCC-------------CSSCCCCCSEECSSC--EEEEEE-EECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             CCCcEEEEecCCcc-------------cccccceeeecccCc--eEEEEE-cCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            49999999998761             001 23366778766  999997 999   99999999999999999999998


Q ss_pred             EEE-EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCC-------------------------cccce
Q 023246          156 VRL-MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN-------------------------AEKIM  208 (285)
Q Consensus       156 ~~~-~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~-------------------------~~~~~  208 (285)
                      +.. +.+|...|.+++|+ ++++|++++.|++|++||+++++. ..+..+                         ...+.
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            877 55899999999999 999999999999999999987763 222111                         11222


Q ss_pred             eeccccCCCceEEEeC-CCCeEEEEEe
Q 023246          209 KANKQGREDHSRITLT-PDVIMHVLRL  234 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s-~d~~i~vwd~  234 (285)
                      .+. ..+++.++++++ .++.|++|++
T Consensus       312 ~i~-~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          312 KII-KSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEE-ECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEE-EeCCCCEEEEEECCCCeEEEEEe
Confidence            332 344566777777 8999999999

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=5.8e-28  Score=200.96  Aligned_cols=233  Identities=14%  Similarity=0.195  Sum_probs=180.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++|+|+|++ .+||+|+.||+|+|||+.+++              ..... .+|...+.+++++  +.+|+++ .|
T Consensus       147 ~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~--------------~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d  208 (420)
T 4gga_A          147 GEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQK--------------RLRNM-TSHSARVGSLSWN--SYILSSGSRS  208 (420)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--------------EEEEE-CCCSSCEEEEEEE--TTEEEEEETT
T ss_pred             CCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCc--------------EEEEE-eCCCCceEEEeeC--CCEEEEEeCC
Confidence            3569999999986 899999999999999999886              33333 7899999988775  5688886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc----eEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK----LVR  157 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----~~~  157 (285)
                      +.+++||.....               ..+..+.+|...  +..+.+ +++++++++++.|+.+++|+..+++    .+.
T Consensus       209 ~~i~~~d~~~~~---------------~~~~~~~~h~~~--~~~~~~-~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~  270 (420)
T 4gga_A          209 GHIHHHDVRVAE---------------HHVATLSGHSQE--VCGLRW-APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ  270 (420)
T ss_dssp             SEEEEEETTSSS---------------CEEEEEECCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred             CceeEeeecccc---------------eeeEEecccccc--eeeeee-cCCCCeeeeeeccccceEEeeccccccceeee
Confidence            999999987652               456778888876  899986 9999999999999999999998765    356


Q ss_pred             EEecccccceEeEEcCCCCe-EEE--EecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEE-eCCCCeEEEEE
Q 023246          158 LMVGDRHVVNQLEPHPHIPM-FAT--CGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLR  233 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~-l~t--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~i~vwd  233 (285)
                      ....|...|.+++|+|.+.. +++  |+.|++|++||++++...........+....+......++++ ++.|+.|++||
T Consensus       271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd  350 (420)
T 4gga_A          271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK  350 (420)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred             eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEE
Confidence            67789999999999997665 444  457999999999887643322234445555554333333332 45799999999


Q ss_pred             ecccccceeE----------eeeccccccCCCCCcCeEEEeecCCCCC
Q 023246          234 LQRRQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       234 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      +.+.+.+..+          .++|++..+++...++.|.++++.+.+.
T Consensus       351 ~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          351 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence            9887655443          5677888888888889999998766543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.3e-28  Score=192.11  Aligned_cols=228  Identities=17%  Similarity=0.200  Sum_probs=176.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +..+|++++| |++ .+|++|+.||.|++||+.+++              .... ...|...|.+++|+|++++|+++ .
T Consensus        17 h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~--------------~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A           17 HDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQW--------------LGTV-VYTGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             CSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSE--------------EEEE-EEECSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCE--------------EEEE-eecCCccEEEEEECCCCCEEEEecC
Confidence            4578999999 865 899999999999999998765              2222 26788999999999999999885 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |+.|++|++....             ..+....+..|...  |.+++|   +++++++++.||.|++||  .++.+..+.
T Consensus        80 dg~i~~~~~~~~~-------------~~~~~~~~~~~~~~--i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~  139 (313)
T 3odt_A           80 DTMINGVPLFATS-------------GEDPLYTLIGHQGN--VCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQ  139 (313)
T ss_dssp             TSCEEEEETTCCT-------------TSCC-CEECCCSSC--EEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred             CCeEEEEEeeecC-------------CCCcccchhhcccC--EEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence            9999999997641             12456777788866  999986   477999999999999999  678888899


Q ss_pred             cccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          161 GDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       161 ~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .|...+.+++|+| ++.++++++.|+.|++||... ....+.. +...+..+.+ .+++. +++++.|+.|++||+++.+
T Consensus       140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~-~~~~~-~~~~~~dg~i~i~d~~~~~  216 (313)
T 3odt_A          140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-VIKTFSGIHNDVVRHLAV-VDDGH-FISCSNDGLIKLVDMHTGD  216 (313)
T ss_dssp             CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-EEEEECSSCSSCEEEEEE-EETTE-EEEEETTSEEEEEETTTCC
T ss_pred             cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-eEEEEeccCcccEEEEEE-cCCCe-EEEccCCCeEEEEECCchh
Confidence            9999999999988 899999999999999999432 2233333 5555555544 33334 8999999999999998776


Q ss_pred             cceeE----------eeeccccccCCCCCcCeEEEeecCCCC
Q 023246          239 TLAYR----------ERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       239 ~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .+..+          .+.+++ .+.....++.+++++...+.
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~  257 (313)
T 3odt_A          217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS  257 (313)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred             hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence            55444          234444 45566667788888876653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-28  Score=206.41  Aligned_cols=216  Identities=14%  Similarity=0.161  Sum_probs=163.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEcc---CCcccCCcCCCCCcccccccccCCCCCcceEEEE--EecCCCEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR---KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA--YSNTSELLI   77 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~--~s~~~~~l~   77 (285)
                      ..+|++++|+|++ .+|++|+.||+|++||+.   +++........ .+..+...  ..++...+.++.  +++++.+|+
T Consensus       111 ~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          111 SSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLK--NFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGG--GGSSCCCEEEEEEEECSSCEEEE
T ss_pred             CCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEcc--CcccccCceEEEEEEcCCCCEEE
Confidence            5689999999975 899999999999999995   44322111100 11111000  011566788887  557888888


Q ss_pred             Ee-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec--ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           78 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        78 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      ++ .|+.|++||+.++                +.+..+..  |...  |.+++| +|+++++++|+.||.|++||+++++
T Consensus       187 ~~~~d~~i~iwd~~~~----------------~~~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTL----------------ERLQIIENSPRHGA--VSSICI-DEECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             EEETTSEEEEEETTTC----------------CEEEEEECCGGGCC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             EEeCCCeEEEEeCCCC----------------eeeEEEccCCCCCc--eEEEEE-CCCCCEEEEEcCCCeEEEEEcCCcc
Confidence            86 5999999999887                67888887  6655  999997 9999999999999999999999999


Q ss_pred             eEEEEe-cccccceEeEEc----CCCCeEEEEecCCcEEEEcCCCCCC-CCCCC--------------------------
Q 023246          155 LVRLMV-GDRHVVNQLEPH----PHIPMFATCGIEKTVKLWAPMPTDF-PPLPD--------------------------  202 (285)
Q Consensus       155 ~~~~~~-~h~~~v~~~~~~----p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--------------------------  202 (285)
                      ++..+. .|...|.+++|+    |++.+|++++.|+.|++||++.+.. ..+.+                          
T Consensus       248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            999886 788899999665    4677999999999999999976541 22221                          


Q ss_pred             CcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      |...+..+.+.  ++.++++++.|+.|++||+.+++....+
T Consensus       328 ~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          328 SLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             SGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             cCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEE
Confidence            33444444332  4578999999999999999988766555

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=5.4e-28  Score=193.38  Aligned_cols=245  Identities=12%  Similarity=0.116  Sum_probs=174.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      +++|+||++  ++||+|. |++|+|||+.+++....             ....+|...|++++|+|++++|++| .|++|
T Consensus        28 ~~~l~WS~~--~~lAvg~-D~tV~iWd~~tg~~~~~-------------~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQL-------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEE-------------EECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEECCC--CEEEEEe-CCEEEEEECCCCCEEEE-------------EEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            467999995  4787765 99999999999873211             1125788899999999999999996 49999


Q ss_pred             EEEEcCCCCCCCC------------------------CCCCCcc-ccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           85 YLFEKNMGLGPSP------------------------LSLSPED-LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        85 ~iwd~~~~~~~~~------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      ++|++.++.....                        ..+.... ......+..+.+|...  +..+.+ .+++++++++
T Consensus        92 ~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~s~  168 (318)
T 4ggc_A           92 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRW-APDGRHLASG  168 (318)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEE-CTTSSEEEEE
T ss_pred             EEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc--eEEEEE-cCCCCEEEEE
Confidence            9999987641000                        0000000 1112334556677765  888886 8999999999


Q ss_pred             cCCCeEEEEecCCCce----EEEEecccccceEeEEcCCCCeE---EEEecCCcEEEEcCCCCCCCCCCCCcccceeecc
Q 023246          140 SDCGHLFIWKKKGGKL----VRLMVGDRHVVNQLEPHPHIPMF---ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK  212 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l---~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  212 (285)
                      +.|+.|++||+++++.    ......|.+.|.+++++|.+..+   ++++.+++|++|+.+.........+...+....+
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~  248 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW  248 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee
Confidence            9999999999987653    34556688899999999987653   4667889999999987765443334445555544


Q ss_pred             ccCCCceEE-EeCCCCeEEEEEecccccceeE----------eeeccccccCCCCCcCeEEEeecCCC
Q 023246          213 QGREDHSRI-TLTPDVIMHVLRLQRRQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       213 ~~~~~~~~~-~~s~d~~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ......+++ +++.|+.|++||+++++.+..+          .+++++..+++.+.++.|.++++.+.
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            333333333 3568999999999887665443          45667777777777888888877553

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.5e-28  Score=202.65  Aligned_cols=215  Identities=9%  Similarity=0.051  Sum_probs=149.7

Q ss_pred             CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec--------CCCEEEEe-cCCcEEE
Q 023246           16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--------TSELLISY-NDELVYL   86 (285)
Q Consensus        16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--------~~~~l~s~-~d~~i~i   86 (285)
                      ..+|++|+.|++|+|||+.+++...          ......+.+|.+.|++++|+|        ++++|+++ .|++|+|
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~----------~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIIT----------QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEE----------EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccce----------eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence            4689999999999999999875311          122233489999999999998        78899996 5999999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEEecCCCeEEEEecCCCceEEE-------
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRL-------  158 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~-------  158 (285)
                      ||+...                .....+..|...  +.+++| +|++ ++|++++.|++|++||+++++....       
T Consensus       171 Wd~~~~----------------~~~~~~~~~~~~--v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~  231 (393)
T 4gq1_A          171 WRLTDE----------------GPILAGYPLSSP--GISVQF-RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV  231 (393)
T ss_dssp             EEEETT----------------EEEEEEEECSSC--EEEEEE-ETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred             EECCCC----------------ceeeeecCCCCC--cEEEEE-CCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence            999876                566667777766  999997 8876 5899999999999999988765332       


Q ss_pred             ------------------EecccccceEeEEc-CCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccc-----------
Q 023246          159 ------------------MVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-----------  207 (285)
Q Consensus       159 ------------------~~~h~~~v~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-----------  207 (285)
                                        ..+|...|.++.|+ |+++.+++++.|+++++||+..... ..+..+...+           
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence                              23567788999986 7999999999999999999876542 2222221111           


Q ss_pred             -------eeeccccC-CCceEEEeCCCCeEEEEEeccccccee----------EeeeccccccCCCCCcC
Q 023246          208 -------MKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAY----------RERRYNAADFESDEEEG  259 (285)
Q Consensus       208 -------~~~~~~~~-~~~~~~~~s~d~~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~  259 (285)
                             ....+... +..++++++.|+.|++||+.+++....          +.++|++..++...++|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                   11111122 334677899999999999988755443          24555555555554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.4e-27  Score=199.58  Aligned_cols=225  Identities=17%  Similarity=0.275  Sum_probs=171.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ..+|.+++|  + +.+|++|+.||+|++||+.+++              ....+ .+|...|.+++|++  .+++++ .|
T Consensus       173 ~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~--------------~~~~~-~~h~~~v~~l~~~~--~~l~s~s~d  232 (435)
T 1p22_A          173 TGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGE--------------MLNTL-IHHCEAVLHLRFNN--GMMVTCSKD  232 (435)
T ss_dssp             SSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCC--------------EEEEE-CCCCSCEEEEECCT--TEEEEEETT
T ss_pred             CCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCc--------------EEEEE-cCCCCcEEEEEEcC--CEEEEeeCC
Confidence            456778877  3 3688888888888888888775              22233 67899999999974  477775 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCc---eEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      +.|++||+.++                ...   ..+.+|...  |.++++   +++++++|+.||.|++||+++++.+..
T Consensus       233 g~i~vwd~~~~----------------~~~~~~~~~~~~~~~--v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          233 RSIAVWDMASP----------------TDITLRRVLVGHRAA--VNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             SCEEEEECSSS----------------SCCEEEEEECCCSSC--EEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEeCCCC----------------CCceeeeEecCCCCc--EEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEE
Confidence            99999999876                333   566778766  999986   678999999999999999999999999


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.+|...|.+++|+  +.++++++.||.|++||++++. +..+.+|...+..+.+   ++.++++++.||.|++||+...
T Consensus       292 ~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          292 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHH
T ss_pred             EcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999994  6799999999999999998776 4567778877777655   5668999999999999999765


Q ss_pred             c---------cceeEe--------eeccccccCCCCCcCeEEEeecCCCCCCC
Q 023246          238 Q---------TLAYRE--------RRYNAADFESDEEEGETYLLGFSDSDASS  273 (285)
Q Consensus       238 ~---------~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  273 (285)
                      .         .+..+.        ...++..+.+...++.|.++++.++....
T Consensus       367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          367 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             TSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC--------
T ss_pred             CCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence            4         222221        11144556777788899999988765443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.7e-28  Score=192.15  Aligned_cols=211  Identities=14%  Similarity=0.061  Sum_probs=142.8

Q ss_pred             CccceeEEEEcCC----CCcEEEEeeCCCcEEEEEccCCcccCCc--CCCCCcccccc------cccCCCCCcceEEEEE
Q 023246            2 NSIRLNAIVIDPR----NPNYFAVGGSDEYARVYDIRKCHWYSPI--SSDTPVDTFCP------RHLIGKNNIHITGLAY   69 (285)
Q Consensus         2 ~~~~v~~~~~s~~----~~~~l~tg~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~------~~~~~~h~~~v~~i~~   69 (285)
                      ....|.+++|+|+    + ..+++++.+  +++|++.+++++...  ..++.++.+..      ......|...++.++|
T Consensus       110 ~~~~v~sla~spd~~~~~-~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~f  186 (356)
T 2w18_A          110 EIREIRALFCSSDDESEK-QVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTF  186 (356)
T ss_dssp             SEEEEEEECC------CC-EEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEE
T ss_pred             cccceEEEEECCCccccc-cEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEe
Confidence            3457889999997    5 677766632  444444444332220  01111111111      1111467888888899


Q ss_pred             ec---CCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC-ceeeeeEEEecCCCcEE--------
Q 023246           70 SN---TSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYV--------  136 (285)
Q Consensus        70 s~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l--------  136 (285)
                      ++   ++.+|+++ .|++|+|||+.++                +.++++.+|.. ...+.+++| +|+++++        
T Consensus       187 s~~~g~~~~LaSgS~D~TIkIWDl~TG----------------k~l~tL~g~~~~v~~v~~vaf-SpdG~~lvs~s~~~~  249 (356)
T 2w18_A          187 AEVQGMQEALLGTTIMNNIVIWNLKTG----------------QLLKKMHIDDSYQASVCHKAY-SEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEETSTTEEEEEETTSEEEEEETTTC----------------CEEEEEECCC---CCCEEEEE-EETTEEEEEEC----
T ss_pred             eccCCCCceEEEecCCCcEEEEECCCC----------------cEEEEEcCCCcceeeeEEEEE-CCCCCEEEEeccCCC
Confidence            98   66899996 5999999999988                78888886543 123677787 8999876        


Q ss_pred             ----EEecCCCeEEEEecCCCceEEEE-----ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCccc
Q 023246          137 ----MSGSDCGHLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK  206 (285)
Q Consensus       137 ----~~~~~dg~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~  206 (285)
                          ++|+.|++|++||..+++.+..+     .+|...+.+..+  ++..+++++.|++|+|||+.+++ +.++.+|...
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~  327 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ  327 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence                56788999999999999988765     356555444444  47789999999999999999887 4667778777


Q ss_pred             ceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          207 IMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       207 ~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +.....+++++.++++++.|++|++||+
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            6654445778889999999999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=2.2e-27  Score=197.43  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=176.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      ++.|+||++  ++||+|. |++|+|||+.+++...             .....+|...|++++|+|+|++|++| .|++|
T Consensus       108 ~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~-------------~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v  171 (420)
T 4gga_A          108 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQ-------------LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV  171 (420)
T ss_dssp             CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEE-------------EEECCSTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEE-------------EEEecCCCCcEEEEEECCCCCEEEEEECCCeE
Confidence            567999984  5888776 9999999999987321             11125788899999999999999996 49999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC-ceEEEEeccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDR  163 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~  163 (285)
                      ++||+.++                +.+..+.+|...  +.++.+   ++.++++|+.|+.+++||.... ..+..+.+|.
T Consensus       172 ~iWd~~~~----------------~~~~~~~~h~~~--v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~  230 (420)
T 4gga_A          172 QLWDVQQQ----------------KRLRNMTSHSAR--VGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS  230 (420)
T ss_dssp             EEEETTTT----------------EEEEEECCCSSC--EEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EEEEcCCC----------------cEEEEEeCCCCc--eEEEee---CCCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence            99999988                788889999876  888775   4789999999999999998764 4567889999


Q ss_pred             ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-----CCCCCCcccceeeccccCCCceEEE--eCCCCeEEEEEecc
Q 023246          164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRIT--LTPDVIMHVLRLQR  236 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~s~d~~i~vwd~~~  236 (285)
                      ..+..+.|+|+++++++++.|+.+++|+...+..     .....+...+....+......++++  ++.|+.|++||+.+
T Consensus       231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            9999999999999999999999999999976542     2345567777777766655556554  57899999999988


Q ss_pred             cccceeEe---------eeccccccCC--CCCcCeEEEeecCCC
Q 023246          237 RQTLAYRE---------RRYNAADFES--DEEEGETYLLGFSDS  269 (285)
Q Consensus       237 ~~~~~~~~---------~~~~~~~~~~--~~~~~~v~~~~~~~~  269 (285)
                      ++....+.         +.+....+..  +..++.|++++...+
T Consensus       311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            76655543         2333333332  234566777776544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=1.5e-27  Score=200.81  Aligned_cols=223  Identities=19%  Similarity=0.318  Sum_probs=176.8

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i   84 (285)
                      +.++.+++   .+|++|+.||+|++||+.+++              ....+ .+|...|++++|+|++ +|++ +.|++|
T Consensus       125 ~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~--------------~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i  185 (464)
T 3v7d_B          125 ITCLQFED---NYVITGADDKMIRVYDSINKK--------------FLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEEEET---TEEEEEETTSCEEEEETTTTE--------------EEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred             EEEEEECC---CEEEEEcCCCcEEEEECCCCc--------------EEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence            46666643   699999999999999999886              33333 6899999999999988 6666 569999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec--CCCcEEEEecCCCeEEEEecCCCce-------
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG--PNDEYVMSGSDCGHLFIWKKKGGKL-------  155 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~v~vwd~~~~~~-------  155 (285)
                      ++||+.++                +.+..+.+|...  |.+++| .  ++++++++++.||.|++||+++++.       
T Consensus       186 ~vwd~~~~----------------~~~~~~~~h~~~--v~~l~~-~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          186 RVWDIKKG----------------CCTHVFEGHNST--VRCLDI-VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             EEEETTTT----------------EEEEEECCCSSC--EEEEEE-EESSSCEEEEEEETTSCEEEEECCCCCCC------
T ss_pred             EEEECCCC----------------cEEEEECCCCCc--cEEEEE-ecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc
Confidence            99999887                678888889877  999987 5  6789999999999999999987652       


Q ss_pred             ----------------EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCc
Q 023246          156 ----------------VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH  218 (285)
Q Consensus       156 ----------------~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  218 (285)
                                      +..+.+|...|.++  +++++++++++.|+.|++||++.++ +..+.+|...+..+.+ .+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~  323 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY-DHERK  323 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-ETTTT
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE-cCCCC
Confidence                            55677888888876  5678899999999999999998776 4566677777766655 45667


Q ss_pred             eEEEeCCCCeEEEEEecccccceeEee--------eccccccCCCCCcCeEEEeecCCC
Q 023246          219 SRITLTPDVIMHVLRLQRRQTLAYRER--------RYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+++++.|+.|++||+++++.+..+..        ......+.+...++.+.+++...+
T Consensus       324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~  382 (464)
T 3v7d_B          324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDY  382 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC
Confidence            899999999999999988766555421        112345556666777888887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-28  Score=221.02  Aligned_cols=198  Identities=10%  Similarity=0.131  Sum_probs=159.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .+||+|+.||+|+||+....+.              ...  ..|..+|++++|+| +++|+++ .|
T Consensus        17 ~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~~~--------------~~~--~~~~~~V~~l~fsp-g~~L~S~s~D   78 (902)
T 2oaj_A           17 SSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVEV--------------VIK--LEDRSAIKEMRFVK-GIYLVVINAK   78 (902)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTSEEEEECSTTCEE--------------EEE--CSSCCCEEEEEEET-TTEEEEEETT
T ss_pred             CCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCcEE--------------EEE--cCCCCCEEEEEEcC-CCEEEEEECc
Confidence            4689999999986 8999999999999999876542              111  34788999999999 8888885 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE-----
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-----  156 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-----  156 (285)
                      ++|++||+.++                +.+..+. |...  |.+++| +|+++++++|+.||.|++||++++++.     
T Consensus        79 ~~v~lWd~~~~----------------~~~~~~~-~~~~--V~~v~~-sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           79 DTVYVLSLYSQ----------------KVLTTVF-VPGK--ITSIDT-DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             CEEEEEETTTC----------------SEEEEEE-CSSC--EEEEEC-CTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEECCCC----------------cEEEEEc-CCCC--EEEEEE-CCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            99999999887                5667775 4444  999997 999999999999999999999987754     


Q ss_pred             ------EEEecccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCCC-CCCCCC------------------cccceee
Q 023246          157 ------RLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDF-PPLPDN------------------AEKIMKA  210 (285)
Q Consensus       157 ------~~~~~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~------------------~~~~~~~  210 (285)
                            ..+.+|.+.|.+++|+|+ +..+++++.|+.| +||++.++. ..+..+                  ...+..+
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence                  223568899999999996 4679999999999 999987652 222222                  3445555


Q ss_pred             ccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          211 NKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      .+ .+++.++++++.|+.|++||+++++.+
T Consensus       218 ~f-spdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          218 LY-HPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EE-CTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EE-cCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            54 556779999999999999999876554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=197.06  Aligned_cols=160  Identities=16%  Similarity=0.227  Sum_probs=134.6

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---CEEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~s   78 (285)
                      ...+|++++|+|+++.+|++++.||.|++||+.+++..              ..  ..+...+.++.|++.+   .++++
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~~  161 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--------------DV--FNFEETVYSHHMSPVSTKHCLVAV  161 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--------------EE--EECSSCEEEEEECSSCSSCCEEEE
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--------------ee--ccCCCceeeeEeecCCCCCcEEEE
Confidence            45689999999965689999999999999999987632              21  1356789999999855   47777


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCc-e
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGK-L  155 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-~  155 (285)
                      + .++.|++||+.++                +.+..+..|...  |.+++| +|+++ ++++++.||.|++||++++. .
T Consensus       162 ~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~ll~~~~~dg~i~i~d~~~~~~~  222 (408)
T 4a11_B          162 GTRGPKVQLCDLKSG----------------SCSHILQGHRQE--ILAVSW-SPRYDYILATASADSRVKLWDVRRASGC  222 (408)
T ss_dssp             EESSSSEEEEESSSS----------------CCCEEECCCCSC--EEEEEE-CSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred             EcCCCeEEEEeCCCc----------------ceeeeecCCCCc--EEEEEE-CCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence            5 5999999999887                678888888876  999997 99988 58999999999999998765 4


Q ss_pred             EEEE---------------ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          156 VRLM---------------VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       156 ~~~~---------------~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +..+               ..|...|.+++|+|++++|++++.|+.|++||++.+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            4444               5688899999999999999999999999999997654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=5.5e-28  Score=209.97  Aligned_cols=237  Identities=12%  Similarity=0.117  Sum_probs=182.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC----cccCCcCCCCCcccccccccCCCCCcc-eEEEEEec--CCC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC----HWYSPISSDTPVDTFCPRHLIGKNNIH-ITGLAYSN--TSE   74 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~s~--~~~   74 (285)
                      .++.|++++|+|++ .+|++++ ++.|++||+.++    +              ....+ .+|... |++++|+|  +++
T Consensus        17 ~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~--------------~~~~~-~~h~~~~v~~~~~sp~~~~~   79 (615)
T 1pgu_A           17 QRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVP--------------PVVQF-TGHGSSVVTTVKFSPIKGSQ   79 (615)
T ss_dssp             CTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSC--------------SEEEE-CTTTTSCEEEEEECSSTTCC
T ss_pred             ccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccc--------------cceEE-ecCCCceEEEEEECcCCCCC
Confidence            45789999999986 8888888 889999999876    3              22233 789999 99999999  999


Q ss_pred             EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC----CeEEEEe
Q 023246           75 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIWK  149 (285)
Q Consensus        75 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~vwd  149 (285)
                      +|+++ .|+.|++||+.++..        ......+....+..|...  |.+++| +|+++++++++.+    +.|++||
T Consensus        80 ~l~s~~~dg~v~vw~~~~~~~--------~~~~~~~~~~~~~~~~~~--v~~~~~-s~~~~~l~~~~~~~~~~~~v~~~d  148 (615)
T 1pgu_A           80 YLCSGDESGKVIVWGWTFDKE--------SNSVEVNVKSEFQVLAGP--ISDISW-DFEGRRLCVVGEGRDNFGVFISWD  148 (615)
T ss_dssp             EEEEEETTSEEEEEEEEEEGG--------GTEEEEEEEEEEECCSSC--EEEEEE-CTTSSEEEEEECCSSCSEEEEETT
T ss_pred             EEEEecCCCEEEEEeCCCCcc--------cccccccccchhhccccc--EEEEEE-eCCCCEEEEeccCCCCccEEEEEE
Confidence            99996 599999999963200        000000356677778766  999997 9999999999987    7899998


Q ss_pred             cCCCceEEEEecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC-CCCCCCCcc---cceeeccccCC-CceEEEe
Q 023246          150 KKGGKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD-FPPLPDNAE---KIMKANKQGRE-DHSRITL  223 (285)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~---~~~~~~~~~~~-~~~~~~~  223 (285)
                        .++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+...+ +..+..|..   .+..+.+ .++ +.+++++
T Consensus       149 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~  225 (615)
T 1pgu_A          149 --SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF-SPDSGEFVITV  225 (615)
T ss_dssp             --TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE-CSTTCCEEEEE
T ss_pred             --CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE-CCCCCCEEEEE
Confidence              5778899999999999999999998 79999999999999998765 355666766   6666655 445 7789999


Q ss_pred             CCCCeEEEEEecccccceeE-----eeec--------cccccCCCCCcCeEEEeecCCC
Q 023246          224 TPDVIMHVLRLQRRQTLAYR-----ERRY--------NAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       224 s~d~~i~vwd~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      +.|+.|++||+.+++.+..+     .+..        +...+.....++.+.+++...+
T Consensus       226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC
Confidence            99999999999887665554     1211        3333444445566777766544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4e-27  Score=187.81  Aligned_cols=232  Identities=14%  Similarity=0.152  Sum_probs=179.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|.+++|+|++ .+|++|+.||.|++|++......            .....+.+|...|.+++|  ++.+|+++ .|
T Consensus        59 ~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~------------~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d  123 (313)
T 3odt_A           59 QGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATSGE------------DPLYTLIGHQGNVCSLSF--QDGVVISGSWD  123 (313)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCTTS------------CC-CEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CccEEEEEECCCC-CEEEEecCCCeEEEEEeeecCCC------------CcccchhhcccCEEEEEe--cCCEEEEEeCC
Confidence            5689999999975 89999999999999999865311            111222689999999999  45677775 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||  ..                +....+..|...  +.++.+.+++++++++++.||.|++||  ..+.+..+..
T Consensus       124 ~~i~~~d--~~----------------~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~  181 (313)
T 3odt_A          124 KTAKVWK--EG----------------SLVYNLQAHNAS--VWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG  181 (313)
T ss_dssp             SEEEEEE--TT----------------EEEEEEECCSSC--EEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS
T ss_pred             CCEEEEc--CC----------------cEEEecccCCCc--eeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec
Confidence            9999999  33                467778888866  999998445999999999999999999  4567777776


Q ss_pred             -ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          162 -DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       162 -h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                       |...|.+++|+|++. +++++.|+.|++||++.++ +..+..|...+..+.+.. ++ .+++++.|+.|++||+.+.+.
T Consensus       182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSL  258 (313)
T ss_dssp             SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCE
T ss_pred             cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCce
Confidence             889999999999988 9999999999999998776 355666777777775533 33 689999999999999988765


Q ss_pred             ceeE----------eeeccccccCCCCCcCeEEEeecCCCCCCCCC
Q 023246          240 LAYR----------ERRYNAADFESDEEEGETYLLGFSDSDASSEG  275 (285)
Q Consensus       240 ~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  275 (285)
                      ...+          .+.+++. +.....++.++++++..+....+.
T Consensus       259 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          259 KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            5444          3344444 444566778888888876554433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-27  Score=212.98  Aligned_cols=206  Identities=12%  Similarity=0.163  Sum_probs=166.2

Q ss_pred             CccceeEEEEcCCC-CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC--CCEEEE
Q 023246            2 NSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~s   78 (285)
                      +..+|++++|+|+. +.+|++|+.||+|++||+.+++.             .......+|...|++++|+|+  +.++++
T Consensus        52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~s  118 (753)
T 3jro_A           52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-------------SQIAVHAVHSASVNSVQWAPHEYGPLLLV  118 (753)
T ss_dssp             CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-------------EEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-------------cccccccCCCCCeEEEEECCCCCCCEEEE
Confidence            35689999999861 48999999999999999997742             122223679999999999999  888888


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-------------CCcEEEEecCCCe
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-------------NDEYVMSGSDCGH  144 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~l~~~~~dg~  144 (285)
                      + .|+.|++||+....              ......+.+|...  |.+++| +|             +++++++|+.||.
T Consensus       119 gs~dg~I~vwdl~~~~--------------~~~~~~~~~~~~~--v~~l~~-~p~~~~~~~~~~~~~d~~~l~sgs~dg~  181 (753)
T 3jro_A          119 ASSDGKVSVVEFKENG--------------TTSPIIIDAHAIG--VNSASW-APATIEEDGEHNGTKESRKFVTGGADNL  181 (753)
T ss_dssp             EETTSEEEEEECCSSS--------------CCCCEEEECCSSC--EEEEEE-CCCC---------CGGGCCEEEEETTSC
T ss_pred             EeCCCcEEEEEeecCC--------------CcceeEeecCCCc--eEEEEe-cCcccccccccccCCCCCEEEEEECCCe
Confidence            6 59999999998751              1234556677766  999997 88             5899999999999


Q ss_pred             EEEEecCCC----ceEEEEecccccceEeEEcCC---CCeEEEEecCCcEEEEcCCCCC------CCCCCCCcccceeec
Q 023246          145 LFIWKKKGG----KLVRLMVGDRHVVNQLEPHPH---IPMFATCGIEKTVKLWAPMPTD------FPPLPDNAEKIMKAN  211 (285)
Q Consensus       145 v~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~---~~~l~t~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~  211 (285)
                      |++||++++    .....+.+|...|.+++|+|+   +++|++++.||.|++||++.+.      ......+...+..+.
T Consensus       182 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  261 (753)
T 3jro_A          182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  261 (753)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEE
T ss_pred             EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEE
Confidence            999999877    456777899999999999999   8999999999999999997752      233344556665555


Q ss_pred             cccCCCceEEEeCCCCeEEEEEecccc
Q 023246          212 KQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      + .+++.++++++.||.|++|++....
T Consensus       262 ~-spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          262 W-SLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             E-CTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             E-cCCCCEEEEEcCCCEEEEEecCCCC
Confidence            4 4567789999999999999998644

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=1.8e-27  Score=222.19  Aligned_cols=199  Identities=18%  Similarity=0.247  Sum_probs=167.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC--CEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISY   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~s~   79 (285)
                      +...|++++|+|++ .+|++|+.||+|++||+.+++              ....+ .+|...|.+++|+|++  .+++++
T Consensus       656 h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~--------------~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg  719 (1249)
T 3sfz_A          656 HEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGK--------------LVHTY-DEHSEQVNCCHFTNKSNHLLLATG  719 (1249)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC--------------EEEEE-ECCSSCEEEEEECSSSSCCEEEEE
T ss_pred             CCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCCCc--------------eEEEE-cCCCCcEEEEEEecCCCceEEEEE
Confidence            35789999999986 899999999999999999886              23333 6899999999999954  477775


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                       .|+.|++||+.++                +....+.+|...  |.+++| +|+++++++++.||.|++||+.+++....
T Consensus       720 ~~d~~v~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-sp~~~~l~s~s~dg~v~vwd~~~~~~~~~  780 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQK----------------ECRNTMFGHTNS--VNHCRF-SPDDELLASCSADGTLRLWDVRSANERKS  780 (1249)
T ss_dssp             ETTSCEEEEETTSS----------------SEEEEECCCSSC--EEEEEE-CSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred             eCCCeEEEEECCCc----------------chhheecCCCCC--EEEEEE-ecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence             5999999999987                678888899877  999997 99999999999999999999877654333


Q ss_pred             E-------------------------------------------------------ecccccceEeEEcCCCCeEEEEec
Q 023246          159 M-------------------------------------------------------VGDRHVVNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       159 ~-------------------------------------------------------~~h~~~v~~~~~~p~~~~l~t~~~  183 (285)
                      +                                                       .+|...|.+++|+|+++++++++.
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  860 (1249)
T 3sfz_A          781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS  860 (1249)
T ss_dssp             EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS
T ss_pred             ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC
Confidence            2                                                       167788999999999999999999


Q ss_pred             CCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          184 EKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       184 d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      |+.|++|++..+. +..+.+|...+..+.+ .+++..+++++.|+.+++|++..
T Consensus       861 dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~-spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          861 QYCVELWNIDSRLKVADCRGHLSWVHGVMF-SPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             SSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CCeEEEEEcCCCceeeecCCCccceEEEEE-CCCCCEEEEEeCCCeEEEEEccc
Confidence            9999999998765 4566778887777765 45677899999999999999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=7.4e-28  Score=215.81  Aligned_cols=207  Identities=18%  Similarity=0.174  Sum_probs=172.9

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +..+|++++|+|++ .+|++|+.||.|++||+.+++              ....+ .+|...|++++|+|++.+|+++ .
T Consensus        54 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~--------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~  117 (814)
T 3mkq_A           54 TETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGE--------------KVVDF-EAHPDYIRSIAVHPTKPYVLSGSD  117 (814)
T ss_dssp             CSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCC--------------EEEEE-ECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-ecCCCCEEEEEEeCCCCEEEEEcC
Confidence            35789999999975 899999999999999999886              33333 6799999999999999988886 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      |+.|++|++..+.               .....+.+|...  |.+++| +| +++.+++++.||.|++||+.+++....+
T Consensus       118 dg~i~vw~~~~~~---------------~~~~~~~~~~~~--v~~~~~-~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          118 DLTVKLWNWENNW---------------ALEQTFEGHEHF--VMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             TSEEEEEEGGGTS---------------EEEEEEECCSSC--EEEEEE-ETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             CCEEEEEECCCCc---------------eEEEEEcCCCCc--EEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence            9999999997652               355677788866  999997 88 8899999999999999999988887777


Q ss_pred             eccc-ccceEeEEcC--CCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          160 VGDR-HVVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       160 ~~h~-~~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ..+. ..+.+++|+|  ++.++++++.||.|++||++.+. +..+.+|...+..+.+ .+++.++++++.||.|++||+.
T Consensus       180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE-CSSSSEEEEEETTSCEEEEETT
T ss_pred             ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-cCCCCEEEEEeCCCeEEEEECC
Confidence            6554 8899999999  99999999999999999998765 4556667766666654 5566689999999999999998


Q ss_pred             ccccceeE
Q 023246          236 RRQTLAYR  243 (285)
Q Consensus       236 ~~~~~~~~  243 (285)
                      +.+....+
T Consensus       259 ~~~~~~~~  266 (814)
T 3mkq_A          259 TYKVEKTL  266 (814)
T ss_dssp             TCSEEEEE
T ss_pred             CCcEEEEe
Confidence            86554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=2.9e-27  Score=197.65  Aligned_cols=221  Identities=17%  Similarity=0.277  Sum_probs=176.1

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ..|.++++  ++ .+|++|+.||+|++||+.+++              ....+ .+|...|.+++|  ++++|+++ .||
T Consensus       134 ~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~~--------------~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg  193 (435)
T 1p22_A          134 KGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLE--------------CKRIL-TGHTGSVLCLQY--DERVIITGSSDS  193 (435)
T ss_dssp             CCEEEEEC--CS-SEEEEEESSSCEEEEESSSCC--------------EEEEE-CCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred             CcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCCe--------------EEEEE-cCCCCcEEEEEE--CCCEEEEEcCCC
Confidence            45777777  43 799999999999999998876              33333 789999999999  67888886 599


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE---EEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---RLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~---~~~  159 (285)
                      +|++||+.++                +.+..+.+|...  |.+++| +  +.++++|+.||.|++||+++++.+   ..+
T Consensus       194 ~i~vwd~~~~----------------~~~~~~~~h~~~--v~~l~~-~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          194 TVRVWDVNTG----------------EMLNTLIHHCEA--VLHLRF-N--NGMMVTCSKDRSIAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             CEEEEESSSC----------------CEEEEECCCCSC--EEEEEC-C--TTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             eEEEEECCCC----------------cEEEEEcCCCCc--EEEEEE-c--CCEEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence            9999999987                678888888876  999996 5  469999999999999999987755   677


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .+|...|.+++|  +++++++++.|+.|++||++++. +..+.+|...+..+.+   .+.++++++.|+.|++||+++++
T Consensus       253 ~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          253 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCCCC
Confidence            789999999999  67899999999999999998876 3556667777766654   35689999999999999999876


Q ss_pred             cceeEee--------eccccccCCCCCcCeEEEeecCCCC
Q 023246          239 TLAYRER--------RYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       239 ~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .+..+..        ..++..+..+..+|.|.++++..+.
T Consensus       328 ~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          328 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence            6554421        1234445556667778777765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=7.6e-27  Score=195.62  Aligned_cols=219  Identities=15%  Similarity=0.256  Sum_probs=176.3

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      +.++.+  ++ .+|++|+.||+|++||+.+++              ....+ .+|...|.+++|+  +.+++++ .|++|
T Consensus       122 ~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~~--------------~~~~~-~~h~~~v~~~~~~--~~~l~s~~~dg~i  181 (445)
T 2ovr_B          122 ITCLQF--CG-NRIVSGSDDNTLKVWSAVTGK--------------CLRTL-VGHTGGVWSSQMR--DNIIISGSTDRTL  181 (445)
T ss_dssp             EEEEEE--ET-TEEEEEETTSCEEEEETTTCC--------------EEEEC-CCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             EEEEEE--cC-CEEEEEECCCcEEEEECCCCc--------------EEEEE-cCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence            455555  43 799999999999999999886              33333 6899999999998  4577775 59999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      ++||+.++                +.+..+.+|...  |.++.+ +  ++.+++|+.||.|++||+++++.+..+.+|..
T Consensus       182 ~vwd~~~~----------------~~~~~~~~h~~~--v~~~~~-~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  240 (445)
T 2ovr_B          182 KVWNAETG----------------ECIHTLYGHTST--VRCMHL-H--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  240 (445)
T ss_dssp             EEEETTTT----------------EEEEEECCCSSC--EEEEEE-E--TTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             EEEECCcC----------------cEEEEECCCCCc--EEEEEe-c--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence            99999887                678888888876  999986 4  67899999999999999999999999999999


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .|.+++|  ++.++++++.|+.|++||++.+. +..+.+|...+..+.+   ++..+++++.|+.|++||+++++.+..+
T Consensus       241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~  315 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTL  315 (445)
T ss_dssp             CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            9999999  67889999999999999997765 4556677777777655   5568999999999999999887665444


Q ss_pred             e--------eeccccccCCCCCcCeEEEeecCCCC
Q 023246          244 E--------RRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       244 ~--------~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .        ..+....+.....++.+.+++...+.
T Consensus       316 ~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~  350 (445)
T 2ovr_B          316 TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ  350 (445)
T ss_dssp             CCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred             cCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc
Confidence            2        22234455666667778888876553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=193.74  Aligned_cols=222  Identities=9%  Similarity=0.011  Sum_probs=161.6

Q ss_pred             CcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCC
Q 023246           16 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG   94 (285)
Q Consensus        16 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~   94 (285)
                      +.+|++|+.||+|++||+.+++....              + .  ...|.++.|+|.   ++++ .|++|++|+....  
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~--------------~-~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~--  105 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITT--------------I-T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ--  105 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEE--------------E-E--EECCCTTCCCCS---EEEECSTTEEEEEETTTE--
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEE--------------E-e--cCCceeeeeCCc---eEEecCCCeEEEEEccCc--
Confidence            37999999999999999998863221              1 1  345667778887   5664 5999999987632  


Q ss_pred             CCCCCCCCccccCCCCceEee-cccCceeeeeEEEecC--CCcEEEEecCCCeEEEEecCCCceEEEEe-cccccceEeE
Q 023246           95 PSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLE  170 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~  170 (285)
                           +...+....+.+..+. .|...  |.+++| +|  +++++++++.||.|++||+++++.+.... .|...|.+++
T Consensus       106 -----~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A          106 -----ITILDSKTNKVLREIEVDSANE--IIYMYG-HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             -----EEEEETTTCCEEEEEECCCSSC--EEEEEC-CC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred             -----eEEeecCCcceeEEeecCCCCC--EEEEEc-CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence                 0001111123333443 44444  999997 99  99999999999999999999999877664 3556899999


Q ss_pred             EcCCCCeEEEEecCCcEEEEcCCCCCCC--CCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee-----
Q 023246          171 PHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY-----  242 (285)
Q Consensus       171 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~-----  242 (285)
                      |+|++.+|++|+.|+.|++||++.+...  .+.. |...+..+.+ .+++.++++++ ++.|++||+++.+.+..     
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~f-s~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~  255 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF-ADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT  255 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEE-CTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEE-eCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc
Confidence            9999999999999999999999887754  5766 7777777765 45667888888 55999999998754322     


Q ss_pred             ----------EeeeccccccCCCCC-cCeEEEeecCCC
Q 023246          243 ----------RERRYNAADFESDEE-EGETYLLGFSDS  269 (285)
Q Consensus       243 ----------~~~~~~~~~~~~~~~-~~~v~~~~~~~~  269 (285)
                                +.+.+++..++.... ++.+.+++++.+
T Consensus       256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence                      455666666666433 555777766544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=8.9e-27  Score=195.18  Aligned_cols=218  Identities=17%  Similarity=0.262  Sum_probs=154.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .|.+++|++   .++++|+.||+|++||+.+++              .... +.+|...|.+++|  ++.+++++ .|+.
T Consensus       201 ~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~--------------~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~  260 (445)
T 2ovr_B          201 TVRCMHLHE---KRVVSGSRDATLRVWDIETGQ--------------CLHV-LMGHVAAVRCVQY--DGRRVVSGAYDFM  260 (445)
T ss_dssp             CEEEEEEET---TEEEEEETTSEEEEEESSSCC--------------EEEE-EECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred             cEEEEEecC---CEEEEEeCCCEEEEEECCCCc--------------EEEE-EcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence            445555532   345555555555555555443              1112 2467777777777  55666664 4788


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  163 (285)
                      |++||+.++                +.+..+.+|...  +.++.|   +++++++++.||.|++||+++++.+..+.+|.
T Consensus       261 i~iwd~~~~----------------~~~~~~~~~~~~--v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  319 (445)
T 2ovr_B          261 VKVWDPETE----------------TCLHTLQGHTNR--VYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ  319 (445)
T ss_dssp             EEEEEGGGT----------------EEEEEECCCSSC--EEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred             EEEEECCCC----------------cEeEEecCCCCc--eEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc
Confidence            888887766                677888888866  999986   68899999999999999999999999999999


Q ss_pred             ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC---CcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ..+.++.++  ++++++++.||.|++||++.++. ..+..   |...+..+.+   .+.++++++.||.|++||+.+++.
T Consensus       320 ~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          320 SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE---CSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE---CCCEEEEEeCCCeEEEEECCCCce
Confidence            999988875  56999999999999999987653 33433   5666666655   346899999999999999998766


Q ss_pred             ceeE---------------eeeccccccCCCCCcCe----EEEeecCC
Q 023246          240 LAYR---------------ERRYNAADFESDEEEGE----TYLLGFSD  268 (285)
Q Consensus       240 ~~~~---------------~~~~~~~~~~~~~~~~~----v~~~~~~~  268 (285)
                      +..+               .+++++..++....+|.    +++++|+.
T Consensus       395 ~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          395 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            5544               23344444444444443    66666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.2e-27  Score=191.76  Aligned_cols=224  Identities=12%  Similarity=0.059  Sum_probs=169.1

Q ss_pred             ccceeEEEEcCCCCc-EEEEeeCCCcEEEEEc-cCCcccCCcCCCCCcccccccccCCC--CCcceEEEEEecCCCEEEE
Q 023246            3 SIRLNAIVIDPRNPN-YFAVGGSDEYARVYDI-RKCHWYSPISSDTPVDTFCPRHLIGK--NNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~-~l~tg~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~i~~s~~~~~l~s   78 (285)
                      ...|++++|+|++ . +|++|+.||.|++||+ .+++.               . .+.+  |...|.+++|+| +.+|++
T Consensus        56 ~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~---------------~-~~~~~~~~~~v~~l~~~~-~~~l~s  117 (342)
T 1yfq_A           56 KHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGSPSF---------------Q-ALTNNEANLGICRICKYG-DDKLIA  117 (342)
T ss_dssp             SSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSSSSE---------------E-ECBSCCCCSCEEEEEEET-TTEEEE
T ss_pred             CCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccCCce---------------E-eccccCCCCceEEEEeCC-CCEEEE
Confidence            4689999999975 8 9999999999999999 76641               1 1256  999999999999 888888


Q ss_pred             e-cCCcEEEEEcCC---------CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEE
Q 023246           79 Y-NDELVYLFEKNM---------GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        79 ~-~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw  148 (285)
                      + .|+.|++||+..         .                +.+..+. |...  +.+++| ++++  +++++.++.|++|
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~~~~~-~~~~--v~~~~~-~~~~--l~~~~~d~~i~i~  175 (342)
T 1yfq_A          118 ASWDGLIEVIDPRNYGDGVIAVKN----------------LNSNNTK-VKNK--IFTMDT-NSSR--LIVGMNNSQVQWF  175 (342)
T ss_dssp             EETTSEEEEECHHHHTTBCEEEEE----------------SCSSSSS-SCCC--EEEEEE-CSSE--EEEEESTTEEEEE
T ss_pred             EcCCCeEEEEcccccccccccccC----------------CeeeEEe-eCCc--eEEEEe-cCCc--EEEEeCCCeEEEE
Confidence            5 599999999976         4                3444554 5544  999997 7776  9999999999999


Q ss_pred             ecCC-Cc--eEEEEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCC------C-CCCCCCCcc---------cce
Q 023246          149 KKKG-GK--LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPT------D-FPPLPDNAE---------KIM  208 (285)
Q Consensus       149 d~~~-~~--~~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~------~-~~~~~~~~~---------~~~  208 (285)
                      |+++ +.  .......|...|.+++|+| +++++++++.||.|++|+++..      . ...+..|..         .+.
T Consensus       176 d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (342)
T 1yfq_A          176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             ECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence            9987 54  3344556888999999999 9999999999999999998765      2 233444433         555


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEecccccceeEee--eccccccCCCCCcCeEEEeecCCCC
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER--RYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .+.+ .+++.++++++.||.|++||+.+++.+..+..  ......+.   .++..++.+..|+-
T Consensus       256 ~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~---~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          256 SIEF-SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA---CSDNILCLATSDDT  315 (342)
T ss_dssp             EEEE-CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE---ECSSEEEEEEECTH
T ss_pred             EEEE-cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec---CCCCeEEEEecCCc
Confidence            5543 45677899999999999999998876655532  22233333   33445555555554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.6e-28  Score=200.82  Aligned_cols=194  Identities=11%  Similarity=0.070  Sum_probs=148.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc-----ceEEEEEecCCCEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-----HITGLAYSNTSELLI   77 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~i~~s~~~~~l~   77 (285)
                      ...|.+++|||+| .+||+++.||.|+|||...                +...+ . |..     .|.+++|||+|++|+
T Consensus        85 ~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~----------------~l~~l-~-~~~~~~~~sv~svafSPDG~~LA  145 (588)
T 2j04_A           85 VCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK----------------MLTNL-D-SKGNLSSRTYHCFEWNPIESSIV  145 (588)
T ss_dssp             SCCEEEEEECSSS-SCEEEEETTSCEEEEETTE----------------EEEEC-C-CSSCSTTTCEEEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc----------------eeeec-c-CCCccccccEEEEEEcCCCCEEE
Confidence            3569999999986 8999999999999999542                11111 3 333     599999999999999


Q ss_pred             Eec-CCcEEEEEcCCCCCCCCCCCCCccccCCC--CceEe----ecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           78 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVY----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        78 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                      +++ ||+|++||+..+.           +...+  .+.++    .+|...  |.+++| +|++  +++++.|+.|++||+
T Consensus       146 sgs~DGtVkIWd~~~~~-----------l~~~~~i~l~ti~~~~~gh~~~--V~sVaw-SPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNS-----------ENTPEFYFESSIRLSDAGSKDW--VTHIVW-YEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEETTSEEEEEECCCCT-----------TTCCCCEEEEEEECSCTTCCCC--EEEEEE-ETTE--EEEEETTCCEEEECC
T ss_pred             EEcCCCEEEEEECCCCc-----------cccccceeeeeeeccccccccc--EEEEEE-cCCc--EEEEeCCCeEEEEEC
Confidence            965 9999999998761           00000  24565    455555  999997 9998  788888999999999


Q ss_pred             CCCce---EEEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC-CCcccceeecc-ccCCCceEEEeC
Q 023246          151 KGGKL---VRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANK-QGREDHSRITLT  224 (285)
Q Consensus       151 ~~~~~---~~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~s  224 (285)
                      ..++.   ..++ .+|...|.+++|+  ++.+++++ +++|++||+.++....+. +|...+..+.. ..++...++++.
T Consensus       210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred             CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence            87773   4566 4788999999999  68899887 699999999888763333 67777766543 144556788889


Q ss_pred             CCCeEEEEEec
Q 023246          225 PDVIMHVLRLQ  235 (285)
Q Consensus       225 ~d~~i~vwd~~  235 (285)
                      .+|+ ++|.+.
T Consensus       287 edG~-klw~~d  296 (588)
T 2j04_A          287 KTSY-KVLLED  296 (588)
T ss_dssp             SCEE-EEEESS
T ss_pred             CCCC-EEEeec
Confidence            9999 999976

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=1.4e-26  Score=186.77  Aligned_cols=199  Identities=14%  Similarity=0.215  Sum_probs=160.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEe-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY-   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~-   79 (285)
                      ...+..+.+++++ .+|++|+.|+.+++||+....              .......+|...+..++|++++.  +++++ 
T Consensus       128 ~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          128 TKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVC--------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             SSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCE--------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             CCceeEEEEeecC-ccceeecCCCeEEEEEeCCCc--------------eEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            3466778899975 899999999999999987654              22333468899999999998764  56664 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|+.|++||+...                +....+.+|...  |.+++| +|++++|++|+.||.|++||+++.+++..+
T Consensus       193 ~d~~i~i~d~~~~----------------~~~~~~~~h~~~--v~~~~~-s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          193 WDKLVKVWNLANC----------------KLKTNHIGHTGY--LNTVTV-SPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             TTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCC----------------ceeeEecCCCCc--EEEEEE-CCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence            5999999999887                678888889876  999997 999999999999999999999999999888


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC----------CCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----------PPLPDNAEKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                      ..+ ..|.+++|+|++. +++++.|+.|++||++....          .....|...+..+.+ .++++++++++.||.|
T Consensus       254 ~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          254 DGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW-SADGQTLFAGYTDNLV  330 (340)
T ss_dssp             ECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE-CTTSSEEEEEETTSCE
T ss_pred             cCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE-CCCCCEEEEEeCCCEE
Confidence            754 6899999999875 55666799999999976531          123346666666654 5667799999999999


Q ss_pred             EEEEecccc
Q 023246          230 HVLRLQRRQ  238 (285)
Q Consensus       230 ~vwd~~~~~  238 (285)
                      ++||++++.
T Consensus       331 ~iW~~~tGt  339 (340)
T 4aow_A          331 RVWQVTIGT  339 (340)
T ss_dssp             EEEEEEC--
T ss_pred             EEEeCCCcC
Confidence            999998874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=4.2e-27  Score=191.48  Aligned_cols=195  Identities=9%  Similarity=0.148  Sum_probs=142.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~   80 (285)
                      ..+|++++|+|++ .+|++|+.++ ++||++.+++..              ..   .+...+..+++.+++..++. + .
T Consensus        19 ~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A           19 SNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHI--------------MS---QEMRHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEE--------------EE---EECSCCCEEEECTTSSEEEEECSS
T ss_pred             CCceEEEEECCCC-CEEEEEcCCE-EEEEecCCccee--------------ee---eecCCeEEEEEcCCCCEEEEEECC
Confidence            5689999999986 8999988775 789998866421              11   11124778889988886643 4 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC---------------------------
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---------------------------  133 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------------  133 (285)
                      |++|++||..++                +.+..+. +...  |.++.+ +++.                           
T Consensus        80 d~~v~iWd~~~~----------------~~~~~~~-~~~~--v~~v~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  139 (355)
T 3vu4_A           80 KEVVHIWDDVKK----------------QDVSRIK-VDAP--VKDLFL-SREFIVVSYGDVISVFKFGNPWKRITDDIRF  139 (355)
T ss_dssp             TTEEEEEETTTT----------------EEEEEEE-CSSC--EEEEEE-CSSEEEEEETTEEEEEESSTTCCBSSCCEEE
T ss_pred             ccEEEEEECCCC----------------cEEEEEE-CCCc--eEEEEE-cCCEEEEEEcCEEEEEECCCCceeeEEeccC
Confidence            889999999876                2333332 1111  333332 2211                           


Q ss_pred             --------cEEEE--ecCCCeEEEEecCCCc----------------eEEEEecccccceEeEEcCCCCeEEEEecCCc-
Q 023246          134 --------EYVMS--GSDCGHLFIWKKKGGK----------------LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-  186 (285)
Q Consensus       134 --------~~l~~--~~~dg~v~vwd~~~~~----------------~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~-  186 (285)
                              .+++.  |+.+|.|++||+.+++                .+..+.+|...|.+++|+|++++|++++.|++ 
T Consensus       140 ~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence                    34444  6889999999998765                26788999999999999999999999999998 


Q ss_pred             EEEEcCCCCC-CCCCC-C-CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          187 VKLWAPMPTD-FPPLP-D-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       187 i~iwd~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      |++||+++++ +..+. + |...+..+.+ .+++.++++++.|+.|++||+...
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~-s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKW-STDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEE-CTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEE-CCCCCEEEEEECCCEEEEEEccCC
Confidence            9999998776 45555 4 6777766655 567789999999999999999765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-27  Score=215.40  Aligned_cols=228  Identities=12%  Similarity=0.071  Sum_probs=154.4

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .+.+++|+|++ ++||+|+.|++|++||+.++.....    ..+..-....+..+|...|++++|+|++++||+++ |++
T Consensus       437 ~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~----~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt  511 (902)
T 2oaj_A          437 TKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDN----ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD  511 (902)
T ss_dssp             CCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTT----BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred             CCCcccccccC-cEEEEecCCCcEEEEECCCccccCC----ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence            45667889975 8999999999999999998742100    00000000111237899999999999999999965 999


Q ss_pred             EEEEEcCCCCCC--------CCCCCCC--ccc-------------------cCCCCceEeecccCceeeeeEEEecCCCc
Q 023246           84 VYLFEKNMGLGP--------SPLSLSP--EDL-------------------QKREEPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        84 i~iwd~~~~~~~--------~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      |+||++.++...        ....+..  ..+                   ...+++..+.+|...  |++++| +|+| 
T Consensus       512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svaf-SpdG-  587 (902)
T 2oaj_A          512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINN-SNIG-  587 (902)
T ss_dssp             EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEE-CBTS-
T ss_pred             EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEe-cCCc-
Confidence            999999765210        0000000  000                   001235677788876  999997 9999 


Q ss_pred             EEEEecCCCeEEEEecCCCceEEE-----Ee-cccccceEeEEc-----CCC---CeEEEEecCCcEEEEcC---CCCC-
Q 023246          135 YVMSGSDCGHLFIWKKKGGKLVRL-----MV-GDRHVVNQLEPH-----PHI---PMFATCGIEKTVKLWAP---MPTD-  196 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~~~~~~-----~~-~h~~~v~~~~~~-----p~~---~~l~t~~~d~~i~iwd~---~~~~-  196 (285)
                      +|++|+.|++|++||++++..+..     +. +|...|++++|+     ||+   ++|++++.|++|++||+   .++. 
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence            999999999999999987776642     22 788999999999     886   78999999999999998   4443 


Q ss_pred             CCCCCCC-----cccceeecccc---------------------CCCceEEEeCCCCeEEEEEeccccccee
Q 023246          197 FPPLPDN-----AEKIMKANKQG---------------------REDHSRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       197 ~~~~~~~-----~~~~~~~~~~~---------------------~~~~~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                      ..++.+|     ...++.+....                     ..+..+++.+ +..+++|++.+.+...+
T Consensus       668 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k  738 (902)
T 2oaj_A          668 DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHK  738 (902)
T ss_dssp             EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEE
T ss_pred             EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceee
Confidence            2333333     23343332111                     0123444444 88999999987655433

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=4.3e-27  Score=192.05  Aligned_cols=162  Identities=9%  Similarity=0.086  Sum_probs=130.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..+|.+++|+|++ .+|++++. +.+++|+..+++.             ........|...|.+++|+|+++++++++ |
T Consensus       176 ~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d  240 (365)
T 4h5i_A          176 RGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSC-------------IARKTDFDKNWSLSKINFIADDTVLIAASLK  240 (365)
T ss_dssp             SSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCE-------------EEEECCCCTTEEEEEEEEEETTEEEEEEEES
T ss_pred             CCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcc-------------eeeeecCCCCCCEEEEEEcCCCCEEEEEecC
Confidence            4579999999986 89988885 5667777776652             22233367899999999999999888854 5


Q ss_pred             C----cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           82 E----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        82 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      +    .+++|++....            ........+.+|...  |.+++| +|++++|++|+.|+.|++||+++++++.
T Consensus       241 ~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~--V~~~~~-Spdg~~lasgs~D~~V~iwd~~~~~~~~  305 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGN------------TSVLRSKQVTNRFKG--ITSMDV-DMKGELAVLASNDNSIALVKLKDLSMSK  305 (365)
T ss_dssp             SSCCEEEEEEEEETTE------------EEEEEEEEEESSCSC--EEEEEE-CTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CcceeEEeecccccce------------ecceeeeeecCCCCC--eEeEEE-CCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence            5    68888886541            000123456677765  999997 9999999999999999999999999998


Q ss_pred             EE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          158 LM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       158 ~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      .+ .+|...|++|+|+|++++|++++.|++|+||++..
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            85 68999999999999999999999999999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=5.4e-26  Score=181.74  Aligned_cols=217  Identities=17%  Similarity=0.271  Sum_probs=164.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCC-ccc-------------------------cccccc
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP-VDT-------------------------FCPRHL   56 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~~~-------------------------~~~~~~   56 (285)
                      ...|++++|+|++ ++|++|+.||+|++||+.+++.+........ +..                         ......
T Consensus        67 ~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~  145 (318)
T 4ggc_A           67 GEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT  145 (318)
T ss_dssp             TCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence            4569999999985 8999999999999999998876544322110 000                         011122


Q ss_pred             CCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-
Q 023246           57 IGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-  134 (285)
Q Consensus        57 ~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  134 (285)
                      ..+|...+..+.+++++++|+++ .|+.|++||+.++..            ..........+...  +..+.+ .+.+. 
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~--v~~~~~-~~~~~~  210 (318)
T 4ggc_A          146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG------------GWVPLQTFTQHQGA--VKAVAW-CPWQSN  210 (318)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT------------BSCCSEEECCCCSC--EEEEEE-CTTSTT
T ss_pred             EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc------------cccceeeecccCCc--eEEEEe-cCCCCc
Confidence            35788999999999999999986 599999999987620            11233444455544  888887 66554 


Q ss_pred             E--EEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe--cCCcEEEEcCCCCC-CCCCCCCccccee
Q 023246          135 Y--VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDNAEKIMK  209 (285)
Q Consensus       135 ~--l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~-~~~~~~~~~~~~~  209 (285)
                      .  +++++.++.|++||.+......... +...+..+.|+|++..+++++  .|+.|++||+++++ +..+.+|...+..
T Consensus       211 ~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~  289 (318)
T 4ggc_A          211 VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS  289 (318)
T ss_dssp             EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            3  3467889999999999887766554 667899999999999877654  79999999998776 4678889888877


Q ss_pred             eccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          210 ANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.+ .+++.++++++.|++|++||+.+.
T Consensus       290 l~~-spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          290 LTM-SPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEE-CTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEE-cCCCCEEEEEecCCeEEEEECCCC
Confidence            765 556779999999999999998653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.7e-25  Score=181.95  Aligned_cols=214  Identities=16%  Similarity=0.137  Sum_probs=146.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV   84 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i   84 (285)
                      .+..+++.+++..++++|+.|++|++||+.+++.+..+.                |...|.+++|+++  .++.+.++.|
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~----------------~~~~v~~v~~~~~--~~~~~~~~~i  121 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK----------------VDAPVKDLFLSRE--FIVVSYGDVI  121 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE----------------CSSCEEEEEECSS--EEEEEETTEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE----------------CCCceEEEEEcCC--EEEEEEcCEE
Confidence            466788888753444778889999999999887433221                3345666666554  2223334445


Q ss_pred             EEEEcCCC-C-----------------------CCCCCCCCCccccCCC---------------C-ceEeecccCceeee
Q 023246           85 YLFEKNMG-L-----------------------GPSPLSLSPEDLQKRE---------------E-PQVYSGHRNSQTVK  124 (285)
Q Consensus        85 ~iwd~~~~-~-----------------------~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~i~  124 (285)
                      ++||+... .                       +.....+..+++....               . +..+.+|...  |.
T Consensus       122 ~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~--v~  199 (355)
T 3vu4_A          122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP--IK  199 (355)
T ss_dssp             EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC--EE
T ss_pred             EEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc--eE
Confidence            55554433 0                       0111112222222211               2 6788899877  99


Q ss_pred             eEEEecCCCcEEEEecCCCe-EEEEecCCCceEEEEe-c-ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC---
Q 023246          125 GVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRLMV-G-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP---  198 (285)
Q Consensus       125 ~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~-~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~---  198 (285)
                      +++| +|++++|++|+.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|++|++||++.....   
T Consensus       200 ~~~~-s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~  278 (355)
T 3vu4_A          200 MVRL-NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH  278 (355)
T ss_dssp             EEEE-CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred             EEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence            9997 999999999999998 9999999999999998 5 9999999999999999999999999999999654311   


Q ss_pred             CCCC--------------------CcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          199 PLPD--------------------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       199 ~~~~--------------------~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      .+..                    ..........+.+++..+++++.||.+++|++.....
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence            1111                    0000002223455677899999999999999887543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1e-26  Score=183.19  Aligned_cols=154  Identities=8%  Similarity=0.006  Sum_probs=115.6

Q ss_pred             cceeEEEEcC--CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCC--CCcceEEEEEecCCCEE---
Q 023246            4 IRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK--NNIHITGLAYSNTSELL---   76 (285)
Q Consensus         4 ~~v~~~~~s~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~i~~s~~~~~l---   76 (285)
                      ..+..++|+|  .++.+|++|+.|++|+|||+.++++              ...+..+  |...+.+++|+|+|.++   
T Consensus       179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~--------------l~tL~g~~~~v~~v~~vafSpdG~~lvs~  244 (356)
T 2w18_A          179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL--------------LKKMHIDDSYQASVCHKAYSEMGLLFIVL  244 (356)
T ss_dssp             CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE--------------EEEEECCC---CCCEEEEEEETTEEEEEE
T ss_pred             CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE--------------EEEEcCCCcceeeeEEEEECCCCCEEEEe
Confidence            3456667776  1247899999999999999999983              3333122  23478888999999876   


Q ss_pred             ---------EEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-----ecccCceeeeeEEEecCCCcEEEEecC
Q 023246           77 ---------ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        77 ---------~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                               ++++ |++|++||..++                +.+..+     .+|...  +.+..+   ++.++++++.
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tg----------------k~l~v~~~~~p~Gh~~~--~lsg~~---sg~~lASgS~  303 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTT----------------LSVGVMLYCLPPGQAGR--FLEGDV---KDHCAAAILT  303 (356)
T ss_dssp             C------------CCEEEEEEETTTT----------------EEEEEEEECCCTTCCCC--EEEEEE---ETTEEEEEET
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCC----------------EEEEEEEeeccCCCcce--eEcccc---CCCEEEEEcC
Confidence                     4444 899999999877                454444     244432  334443   3789999999


Q ss_pred             CCeEEEEecCCCceEEEEecccccce-EeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      |++|++||+.+++++.++.+|...+. .++|+|++++|++|+.|++|++||+
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999999999999999999987665 5899999999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=4.1e-26  Score=185.79  Aligned_cols=198  Identities=11%  Similarity=0.065  Sum_probs=150.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE--ecCCCEEEEe-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY--SNTSELLISY-   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~--s~~~~~l~s~-   79 (285)
                      ..+|++++|+|++ .+|++|+.||.|++||+.+++.              ..  ...|...|++++|  +|++.+|+++ 
T Consensus        86 ~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~--------------~~--~~~~~~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           86 TGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSSNQA--------------IQ--IAQHDAPVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE--------------EE--EEECSSCEEEEEEEECSSCEEEEEEE
T ss_pred             cCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCCCCc--------------ee--eccccCceEEEEEEeCCCCCEEEEcc
Confidence            5689999999975 8999999999999999998762              11  1468999999999  8888888885 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC---------------------------------------c
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---------------------------------------S  120 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~  120 (285)
                      .|+.|++||+.++.                .+..+..+..                                       .
T Consensus       149 ~dg~i~vwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  212 (368)
T 3mmy_A          149 WDKTLKFWDTRSSN----------------PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLK  212 (368)
T ss_dssp             TTSEEEEECSSCSS----------------CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCS
T ss_pred             CCCcEEEEECCCCc----------------EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccccc
Confidence            59999999998762                2222222110                                       0


Q ss_pred             eeeeeEEEecCCC----cEEEEecCCCeEEEEecCCC---ceEEEEecccc------------cceEeEEcCCCCeEEEE
Q 023246          121 QTVKGVNFFGPND----EYVMSGSDCGHLFIWKKKGG---KLVRLMVGDRH------------VVNQLEPHPHIPMFATC  181 (285)
Q Consensus       121 ~~i~~~~~~~~~~----~~l~~~~~dg~v~vwd~~~~---~~~~~~~~h~~------------~v~~~~~~p~~~~l~t~  181 (285)
                      .....+.+ .++.    ..+++++.||.|++||++..   +.+..+..|..            .|.+++|+|++++|+++
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  291 (368)
T 3mmy_A          213 HQHRCVAI-FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV  291 (368)
T ss_dssp             SCEEEEEE-EECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE
T ss_pred             CCCceEEE-cccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE
Confidence            11333333 2222    23999999999999999877   55677777776            79999999999999999


Q ss_pred             ecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          182 GIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       182 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      +.||.|++||++.++ +..+..|...+..+.+ .+++.++++++.|+..+.|++.
T Consensus       292 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          292 GSDGRFSFWDKDARTKLKTSEQLDQPISACCF-NHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCCSSCEEEEEE-CTTSSCEEEEECCCSTTCGGGC
T ss_pred             ccCCeEEEEECCCCcEEEEecCCCCCceEEEE-CCCCCeEEEEeccccccccccc
Confidence            999999999998775 4667777777766655 5667788999888755555443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=4e-26  Score=188.25  Aligned_cols=215  Identities=12%  Similarity=0.035  Sum_probs=136.2

Q ss_pred             ccceeEEEEcC--------CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC
Q 023246            3 SIRLNAIVIDP--------RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE   74 (285)
Q Consensus         3 ~~~v~~~~~s~--------~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~   74 (285)
                      ...|++++|+|        + +++||+|+.|++|+|||+.++.              +.... ..|..+|.+++|+|++.
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~tv~~Wd~~~~~--------------~~~~~-~~~~~~v~~v~~~p~~~  199 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLA-EQVIASVGDDCTLIIWRLTDEG--------------PILAG-YPLSSPGISVQFRPSNP  199 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEE-EEEEEEEETTSEEEEEEEETTE--------------EEEEE-EECSSCEEEEEEETTEE
T ss_pred             CCceEEEEEccccccccCCC-CCEEEEEECCCeEEEEECCCCc--------------eeeee-cCCCCCcEEEEECCCCC
Confidence            46899999997        4 3899999999999999998765              22222 56788999999999885


Q ss_pred             -EEEEe-cCCcEEEEEcCCCCCCCCCCCCCcc---------ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC
Q 023246           75 -LLISY-NDELVYLFEKNMGLGPSPLSLSPED---------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG  143 (285)
Q Consensus        75 -~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg  143 (285)
                       +|+++ .|++|++||+.++............         ...........+|...  +.++.|+.++++.+++++.|+
T Consensus       200 ~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--v~~v~~~~~dg~~l~s~s~d~  277 (393)
T 4gq1_A          200 NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS--LANVRWIGSDGSGILAMCKSG  277 (393)
T ss_dssp             EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS--CSEEEEETTTTCEEEEECTTS
T ss_pred             ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc--ceeeeeecCCCCEEEEEeCCC
Confidence             77775 5999999999876311110000000         0000111122355544  889998679999999999999


Q ss_pred             eEEEEecCCCceEEEEecccccceEeEE------------------cC--CCCeEEEEecCCcEEEEcCCCCCC-CCCCC
Q 023246          144 HLFIWKKKGGKLVRLMVGDRHVVNQLEP------------------HP--HIPMFATCGIEKTVKLWAPMPTDF-PPLPD  202 (285)
Q Consensus       144 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~------------------~p--~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~  202 (285)
                      .+++||+..++....+..|...+..+.+                  +|  ++.++++++.||+|++||+..+.. ..+..
T Consensus       278 ~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~  357 (393)
T 4gq1_A          278 AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ  357 (393)
T ss_dssp             EEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred             CEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            9999999988776666555544444333                  33  233577888999999999987764 44555


Q ss_pred             CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          203 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +...+..+.| .++++++++++.+ .+.+|++...
T Consensus       358 ~~~~V~svaf-spdG~~LA~as~~-Gv~lvrL~gf  390 (393)
T 4gq1_A          358 LGMPIVDFCW-HQDGSHLAIATEG-SVLLTRLMGF  390 (393)
T ss_dssp             CSSCEEEEEE-CTTSSEEEEEESS-EEEEEEEGGG
T ss_pred             CCCcEEEEEE-cCCCCEEEEEeCC-CeEEEEEeCc
Confidence            6677766655 6677788887755 4777776543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.3e-24  Score=178.95  Aligned_cols=228  Identities=6%  Similarity=0.004  Sum_probs=165.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d   81 (285)
                      ..+.+++|+|++..++++++.|+.|++||+.+++..              ..+ ..+ ..+.+++|+|++++|+. +. +
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--------------~~~-~~~-~~v~~~~~spdg~~l~~~~~~~   95 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------ATV-PAG-SSPQGVAVSPDGKQVYVTNMAS   95 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------EEE-ECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------EEE-ECC-CCccceEECCCCCEEEEEECCC
Confidence            357899999987445578889999999999988632              222 222 38999999999997654 54 7


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      +.|++||+.++                +.+..+..+. .  +.+++| +|+++++ ++++.++.|++||+.+++.+..+.
T Consensus        96 ~~v~v~d~~~~----------------~~~~~~~~~~-~--~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A           96 STLSVIDTTSN----------------TVAGTVKTGK-S--PLGLAL-SPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             TEEEEEETTTT----------------EEEEEEECSS-S--EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCC----------------eEEEEEeCCC-C--cceEEE-CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence            99999999887                5666666543 2  788997 9999877 788889999999999999988887


Q ss_pred             cccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeC---CCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT---PDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~i~vwd~~~  236 (285)
                      .| ..+..++|+|+++++ ++++.|+.|++||++.++......+...+..+.+ .++++++++++   .++.|++||+.+
T Consensus       156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEE-CCCCCEEEEEecCcCCCcEEEEECCC
Confidence            65 457999999999986 6777899999999988764332223334444433 44555666665   789999999987


Q ss_pred             cccceeE---------eeecccccc-CCCCCcCeEEEeecCCC
Q 023246          237 RQTLAYR---------ERRYNAADF-ESDEEEGETYLLGFSDS  269 (285)
Q Consensus       237 ~~~~~~~---------~~~~~~~~~-~~~~~~~~v~~~~~~~~  269 (285)
                      .+.+..+         .+.+++..+ .....++.+.+++...+
T Consensus       234 ~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            6554443         334444444 33345566777776654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=7.3e-25  Score=182.74  Aligned_cols=208  Identities=11%  Similarity=-0.021  Sum_probs=160.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~   83 (285)
                      .+.+++|+| ++.++++++.++.|++||+.+++....          .......+|...|.+++|++++++++++. |+.
T Consensus       124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRL----------SPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEE----------CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeee----------cCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            466899999 558899999999999999998863211          11111257888999999999999998865 899


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCCceEEEEecc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      |++||+.++                +.+..+..|...  +.+++| +|+++++ ++++.++.|++||+++++.+..+..+
T Consensus       193 v~~~d~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          193 VHVFDLKTL----------------AYKATVDLTGKW--SKILLY-DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             EEEEETTTC----------------CEEEEEECSSSS--EEEEEE-ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred             EEEEECCCc----------------eEEEEEcCCCCC--eeEEEE-cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence            999999877                677777777765  999997 8999877 45668999999999999988887754


Q ss_pred             cccceEeEEcCCCCeEEEEe--------cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          163 RHVVNQLEPHPHIPMFATCG--------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                       ..+.+++|+|+++++++++        .|+.|++||+++++......+...+..+.+......++++++.++.|++||+
T Consensus       254 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          254 -GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             -SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             -CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence             4699999999999988888        4889999999877653333334444444443323346778899999999999


Q ss_pred             cccccceeE
Q 023246          235 QRRQTLAYR  243 (285)
Q Consensus       235 ~~~~~~~~~  243 (285)
                      .+++....+
T Consensus       333 ~~~~~~~~~  341 (433)
T 3bws_A          333 KEKKVQKSI  341 (433)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCcEEEEe
Confidence            877655444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=1.2e-23  Score=173.17  Aligned_cols=201  Identities=12%  Similarity=0.103  Sum_probs=151.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE-EEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~~-d   81 (285)
                      ..+.+++|+|++..++++++.++.|++||+.+++..              ..+ . +...+.+++|+|+++.+ +++. +
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--------------~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------GTV-K-TGKSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------EEE-E-CSSSEEEEEECTTSSEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE--------------EEE-e-CCCCcceEEECCCCCEEEEEeCCC
Confidence            378899999987445566677899999999987632              111 2 23468999999999966 5654 9


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      +.|++||+.++                +....+..+..   +..++| +|+++++ ++++.++.|++||+++++.+..+.
T Consensus       138 ~~v~~~d~~~~----------------~~~~~~~~~~~---~~~~~~-~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  197 (391)
T 1l0q_A          138 KTVSVINTVTK----------------AVINTVSVGRS---PKGIAV-TPDGTKVYVANFDSMSISVIDTVTNSVIDTVK  197 (391)
T ss_dssp             TEEEEEETTTT----------------EEEEEEECCSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCC----------------cEEEEEecCCC---cceEEE-CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999877                56666665543   688887 9999877 678889999999999998887776


Q ss_pred             cccccceEeEEcCCCCeEEEEe---cCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEec
Q 023246          161 GDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~  235 (285)
                       +...+.+++|+|+++++++++   .++.|++||++.++. ..+..+. .+..+.+ .++++ ++++++.|+.|++||+.
T Consensus       198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~-s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAV-TPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEE-CTTSSEEEEEETTTTEEEEEETT
T ss_pred             -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEE-ccCCCEEEEEcCCCCEEEEEECC
Confidence             456889999999999988887   689999999987653 3333332 2334433 34444 45788999999999998


Q ss_pred             ccccceeE
Q 023246          236 RRQTLAYR  243 (285)
Q Consensus       236 ~~~~~~~~  243 (285)
                      +++.+..+
T Consensus       275 ~~~~~~~~  282 (391)
T 1l0q_A          275 TNTITATM  282 (391)
T ss_dssp             TTEEEEEE
T ss_pred             CCcEEEEE
Confidence            87655443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=3.3e-24  Score=178.60  Aligned_cols=224  Identities=13%  Similarity=0.092  Sum_probs=150.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcC-CCCCcccccccccCCCCCcceEEEEEecCCCEEE---
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI---   77 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~---   77 (285)
                      +...++.+++++++ .++++++.++ +++|+........... ....+..+..... ..|...|.+++|+|++++|+   
T Consensus        35 ~~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEE
Confidence            44568899999975 7888898888 9999875321110000 0011111111111 24567899999999999888   


Q ss_pred             -Eec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCc
Q 023246           78 -SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        78 -s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                       +++ |+.|++||+.+......     ...........+.+|...  |.+++| +|+ ++++++++.||+|++||++++.
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~h~~~--V~~v~~-~p~~~~~las~s~Dg~v~iwD~~~~~  183 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAK-----QQKRPFAYHKLLKDAGGM--VIDMKW-NPTVPSMVAVCLADGSIAVLQVTETV  183 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTC-----SSCCCSEEEECCCSGGGS--EEEEEE-CSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred             eccCCCceEEEEEccccccCCc-----CCcceeeeeeccCCCCCc--eEEEEE-CCCCCCEEEEEECCCeEEEEEcCCCc
Confidence             654 99999999865310000     000000123445567766  999997 887 8899999999999999999887


Q ss_pred             eEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC-------CCcccceeeccccCCCceEE-EeCCC
Q 023246          155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-------DNAEKIMKANKQGREDHSRI-TLTPD  226 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~s~d  226 (285)
                      .+....+|...|.+++|+|++++|++++.||+|++||++......+.       .|...+..+.|.. ...+++ ..+.+
T Consensus       184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~d  262 (434)
T 2oit_A          184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAAD  262 (434)
T ss_dssp             EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETT
T ss_pred             ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEec-CceEEEEEccCC
Confidence            77777788999999999999999999999999999999833222121       1223566666643 333333 23334


Q ss_pred             C------eEEEEEeccc
Q 023246          227 V------IMHVLRLQRR  237 (285)
Q Consensus       227 ~------~i~vwd~~~~  237 (285)
                      |      .+++|++++.
T Consensus       263 g~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          263 GTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCSSSCCEEEEEECCCT
T ss_pred             CccCCCCceEEEEeccC
Confidence            2      4899999865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=2e-23  Score=174.05  Aligned_cols=204  Identities=10%  Similarity=0.061  Sum_probs=153.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-Ee-c
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-N   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~-~   80 (285)
                      ...|++++|+|++ .++++++.|+.|++||+.+++.              ...+ ..|...+.+++|+|+++.++ ++ .
T Consensus       169 ~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~  232 (433)
T 3bws_A          169 LGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAY--------------KATV-DLTGKWSKILLYDPIRDLVYCSNWI  232 (433)
T ss_dssp             CCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCE--------------EEEE-ECSSSSEEEEEEETTTTEEEEEETT
T ss_pred             CCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceE--------------EEEE-cCCCCCeeEEEEcCCCCEEEEEecC
Confidence            3478999999975 8999999999999999987762              2222 46788999999999998764 55 4


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec--------CCCeEEEEecCC
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--------DCGHLFIWKKKG  152 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--------~dg~v~vwd~~~  152 (285)
                      ++.|++||+.++                +.+..+..+.   .+.+++| +|+++++++++        .|+.|++||+.+
T Consensus       233 ~~~i~~~d~~~~----------------~~~~~~~~~~---~~~~~~~-~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          233 SEDISVIDRKTK----------------LEIRKTDKIG---LPRGLLL-SKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             TTEEEEEETTTT----------------EEEEECCCCS---EEEEEEE-CTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             CCcEEEEECCCC----------------cEEEEecCCC---CceEEEE-cCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence            899999999876                4555555432   2889997 99999998887        589999999998


Q ss_pred             CceEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCC------
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTP------  225 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------  225 (285)
                      ++.+..+ .|...+.+++|+|+++. +++++.|+.|++||+++++......+...+..+.+ .++++++++++.      
T Consensus       293 ~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~  370 (433)
T 3bws_A          293 EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIAL-SPDGKYLYVSCRGPNHPT  370 (433)
T ss_dssp             TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE-CTTSSEEEEEECCCCCTT
T ss_pred             CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEE-cCCCCEEEEEecCCCccc
Confidence            8877665 35668999999999976 56778999999999987654222223344444433 344555555444      


Q ss_pred             ---------CCeEEEEEecccccceeEe
Q 023246          226 ---------DVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       226 ---------d~~i~vwd~~~~~~~~~~~  244 (285)
                               ||.|++||+.+.+.+..+.
T Consensus       371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          371 EGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             TCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             cccccccccceEEEEEECCCCcEEEEec
Confidence                     5799999998876655543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=7.5e-22  Score=163.72  Aligned_cols=195  Identities=10%  Similarity=0.081  Sum_probs=147.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCC---cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-E
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-S   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s   78 (285)
                      ...|.+++|+|++ .+|++++.++   .|++||+.+++.              . .+ ..|...+.+++|+|+|+.|+ +
T Consensus       178 ~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~--------------~-~l-~~~~~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          178 PQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAV--------------R-QV-ASFPRHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             SSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE--------------E-EE-ECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcE--------------E-Ee-ecCCCcccCEEEcCCCCEEEEE
Confidence            3578999999986 8899988875   999999998762              1 11 45677899999999999777 4


Q ss_pred             ec-CC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CC--eEEEEecCC
Q 023246           79 YN-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG  152 (285)
Q Consensus        79 ~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~v~vwd~~~  152 (285)
                      ++ ++  .|++||+.++                 ....+..+...  +.+++| +|++++|+.++. ++  .|++||+.+
T Consensus       241 ~~~~g~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASG-----------------QIRQVTDGRSN--NTEPTW-FPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             ECTTSSCEEEEEETTTC-----------------CEEECCCCSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EecCCCceEEEEECCCC-----------------CEEeCcCCCCc--ccceEE-CCCCCEEEEEECCCCCcEEEEEECCC
Confidence            43 44  5999999876                 33566666655  889996 999999888775 44  788889987


Q ss_pred             CceEEEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCC--
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV--  227 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--  227 (285)
                      ++. ..+..|...+..++|+|++++|++++.+   ..|++||+.++....+..+. .+....+ .++++.++.++.++  
T Consensus       301 ~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~-spdg~~l~~~s~~~~~  377 (415)
T 2hqs_A          301 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSL-APNGTMVIYSSSQGMG  377 (415)
T ss_dssp             SCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEE-CTTSSEEEEEEEETTE
T ss_pred             CCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEE-cCCCCEEEEEEcCCCc
Confidence            764 3455577789999999999998888764   58999999888765555443 4444443 55666777777665  


Q ss_pred             -eEEEEEeccc
Q 023246          228 -IMHVLRLQRR  237 (285)
Q Consensus       228 -~i~vwd~~~~  237 (285)
                       .|++||+..+
T Consensus       378 ~~l~~~d~~g~  388 (415)
T 2hqs_A          378 SVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEEETTSC
T ss_pred             cEEEEEECCCC
Confidence             7999998654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=1.3e-21  Score=163.03  Aligned_cols=167  Identities=8%  Similarity=0.063  Sum_probs=124.9

Q ss_pred             cceeEEEEcCCCCcEEE----EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEEEE
Q 023246            4 IRLNAIVIDPRNPNYFA----VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLIS   78 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~----tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~s   78 (285)
                      .+|++++|+|++ .+|+    +|+.|++|+|||+.++....    ......+.......+|...|.+++|+|+ +.+|++
T Consensus        93 ~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           93 FPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEA----KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             SCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTT----CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             CcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCC----cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            369999999986 7888    88999999999997641000    0000000112334679999999999998 678888


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      + .|++|++||++++                .......+|...  +.+++| +|++++|++|+.||.|++||++ ++...
T Consensus       168 ~s~Dg~v~iwD~~~~----------------~~~~~~~~~~~~--v~~v~w-spdg~~lasgs~dg~v~iwd~~-~~~~~  227 (434)
T 2oit_A          168 CLADGSIAVLQVTET----------------VKVCATLPSTVA--VTSVCW-SPKGKQLAVGKQNGTVVQYLPT-LQEKK  227 (434)
T ss_dssp             EETTSCEEEEEESSS----------------EEEEEEECGGGC--EEEEEE-CTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred             EECCCeEEEEEcCCC----------------cceeeccCCCCc--eeEEEE-cCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence            5 5999999999876                344455567655  999996 9999999999999999999998 66666


Q ss_pred             EEeccc-------ccceEeEEcCCCCeEEE-EecCC------cEEEEcCCCC
Q 023246          158 LMVGDR-------HVVNQLEPHPHIPMFAT-CGIEK------TVKLWAPMPT  195 (285)
Q Consensus       158 ~~~~h~-------~~v~~~~~~p~~~~l~t-~~~d~------~i~iwd~~~~  195 (285)
                      .+..|.       ..|.+++|++++.++++ ...||      .+++|+++..
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            665442       37999999998877644 33443      3899998654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=1.2e-20  Score=156.61  Aligned_cols=219  Identities=11%  Similarity=0.034  Sum_probs=154.3

Q ss_pred             cEEEEeeCC------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C---CcEEE
Q 023246           17 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D---ELVYL   86 (285)
Q Consensus        17 ~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d---~~i~i   86 (285)
                      ..++.++.+      +.|++||+..+.               ...+ .+|...+.+++|+|+|++|++++ +   ..|++
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~---------------~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGYN---------------QFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCS---------------CEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCCC---------------CEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence            455555543      799999997432               2222 56788999999999999888854 5   48999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE-EecCCC--eEEEEecCCCceEEEEeccc
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~v~vwd~~~~~~~~~~~~h~  163 (285)
                      ||+.++                +. ..+..+...  +.+++| +|++++|+ +++.++  .|++||+.+++. ..+..|.
T Consensus       208 ~d~~tg----------------~~-~~l~~~~~~--~~~~~~-spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~  266 (415)
T 2hqs_A          208 QTLANG----------------AV-RQVASFPRH--NGAPAF-SPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR  266 (415)
T ss_dssp             EETTTC----------------CE-EEEECCSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred             EECCCC----------------cE-EEeecCCCc--ccCEEE-cCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence            999876                33 456666655  899997 99999887 666655  499999998766 5677788


Q ss_pred             ccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC---CeEEEEEeccc
Q 023246          164 HVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRR  237 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---~~i~vwd~~~~  237 (285)
                      ..+.+++|+|++++|++++. ++  .|.+||+.+++...+..+...+....+ ++++++++.++.+   ..|++||+.++
T Consensus       267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEE-CCCCCEEEEEECcCCceEEEEEECCCC
Confidence            89999999999999888875 44  678889988776555545445544443 5566666666553   68999999875


Q ss_pred             ccc--------eeEeeeccccccCCCCCcC---eEEEeecCCCCCCC
Q 023246          238 QTL--------AYRERRYNAADFESDEEEG---ETYLLGFSDSDASS  273 (285)
Q Consensus       238 ~~~--------~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~  273 (285)
                      +..        ....++|++..+.....++   .+|+++...+....
T Consensus       346 ~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~  392 (415)
T 2hqs_A          346 GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  392 (415)
T ss_dssp             CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             CEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEE
Confidence            432        1224566666555444333   68888876554433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=7e-20  Score=144.33  Aligned_cols=230  Identities=7%  Similarity=-0.004  Sum_probs=153.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCC-CcceEEEEEecCCCEEEEec
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s~~   80 (285)
                      ...|.+++|+|++ .+|++++ ++.|++||+.+ ++..              ... ..| ...+.+++|+|++++|+++.
T Consensus        41 ~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~--------------~~~-~~~~~~~~~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           41 PELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPE--------------KVD-TGFATICNNDHGISPDGALYAISD  103 (297)
T ss_dssp             SSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCE--------------ECC-CTTCCCBCSCCEECTTSSEEEEEE
T ss_pred             CcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCce--------------Eec-cccccccccceEECCCCCEEEEEE
Confidence            3568999999986 7888876 78999999998 6521              111 233 46788999999999888753


Q ss_pred             ---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEE-EecCCCeEEEEecCC-Cce
Q 023246           81 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKG-GKL  155 (285)
Q Consensus        81 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~v~vwd~~~-~~~  155 (285)
                         ++...||.+....               .....+..+. .  +..++| +|++++++ ++..++.+.+|+++. +..
T Consensus       104 ~~~~~~~~l~~~~~~~---------------~~~~~~~~~~-~--~~~~~~-spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A          104 KVEFGKSAIYLLPSTG---------------GTPRLMTKNL-P--SYWHGW-SPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             CTTTSSCEEEEEETTC---------------CCCEECCSSS-S--EEEEEE-CTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             eCCCCcceEEEEECCC---------------CceEEeecCC-C--ccceEE-CCCCCEEEEEECCCCceEEEEEECCCCc
Confidence               3455555543220               1334443333 2  777886 99999877 788899999998532 334


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCC--CCCCCCCCCCcccceeeccccCCCceEEEeCCC------
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM--PTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------  226 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------  226 (285)
                      ...+..|...+.+++|+|++++|+.++ .++.+++|++.  ......+..+...+....+ .+++++++.++.+      
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHP-SPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEE-CTTSSEEEEEEEETTCCSC
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEE-CCCCCEEEEEEcCCCCCcc
Confidence            556667788899999999999877666 58899999874  3444555555555444443 4566666666554      


Q ss_pred             -----CeEEEEEecccccceeEee---eccccccCCCCCcCeEEEeecCCC
Q 023246          227 -----VIMHVLRLQRRQTLAYRER---RYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       227 -----~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                           +.|++||+.+++.......   ......+...++...+++...+++
T Consensus       244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             cccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence                 5799999988755433322   223444555666655666554443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=6.1e-20  Score=148.72  Aligned_cols=239  Identities=6%  Similarity=0.021  Sum_probs=163.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e--cC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y--ND   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~--~d   81 (285)
                      .+.+++|+|++..++++...++.|.+||..+++....+.......      ........+.+++|+|++++++. +  .+
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  163 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR------TEEVRPLQPRELVADDATNTVYISGIGKE  163 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC------CSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc------ccccCCCCCceEEECCCCCEEEEEecCCC
Confidence            466899999874466677778999999999887432221110000      00001123788999999986655 3  27


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|.+||..++                +....+..+...  +..++| +|+++++++++.++.|.+||+.+++.+..+..
T Consensus       164 ~~i~~~d~~~~----------------~~~~~~~~~~~~--~~~~~~-s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~  224 (353)
T 3vgz_A          164 SVIWVVDGGNI----------------KLKTAIQNTGKM--STGLAL-DSEGKRLYTTNADGELITIDTADNKILSRKKL  224 (353)
T ss_dssp             CEEEEEETTTT----------------EEEEEECCCCTT--CCCCEE-ETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEcCCCC----------------ceEEEecCCCCc--cceEEE-CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence            88999999877                566666534433  778886 99999999999999999999999998877764


Q ss_pred             ----ccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEe
Q 023246          162 ----DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 ----h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~  234 (285)
                          +...+..++|+|++++++.++ .++.|.+||+.+++. ..+.....  ..+.+ .++++ ++++...++.|.+||.
T Consensus       225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~-s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLF-NPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEE-ETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEE-CCCCCEEEEEECCCCeEEEEEC
Confidence                455678899999999866655 458999999987764 22221111  22222 33344 5666778999999999


Q ss_pred             cccccceeEeeeccccccCCCCCcCeEEEeecCCCCC
Q 023246          235 QRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (285)
                      .+.+.+..+........+....+...+|+........
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~~  338 (353)
T 3vgz_A          302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTK  338 (353)
T ss_dssp             TTTEEEEEEECCSEEEEEEECTTSCEEEEEEECCCBT
T ss_pred             CCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcccccc
Confidence            8887776665443444555666665688776554433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=2.9e-20  Score=165.13  Aligned_cols=218  Identities=12%  Similarity=0.081  Sum_probs=148.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeC-CC-----cEEEEEccCCcccCCcCCCCCc-----ccc---cccc-cCCCCCcceEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGS-DE-----YARVYDIRKCHWYSPISSDTPV-----DTF---CPRH-LIGKNNIHITGL   67 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~---~~~~-~~~~h~~~v~~i   67 (285)
                      ...|.+++|+||+ .+|++++. |+     .|++||+.+++...........     ...   .... ........+.++
T Consensus        36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4568999999986 88888887 88     8999999988642211100000     000   0000 000001347899


Q ss_pred             EEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCC--CceEeecccCceeeeeEEEecCCCcEEEEecCCCeE
Q 023246           68 AYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE--EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL  145 (285)
Q Consensus        68 ~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v  145 (285)
                      +|||+|++|+++.++.|++||+.++                .  ....+..+...  +..++| +|+|++|+.++ ++.|
T Consensus       115 ~~SpDg~~l~~~~~~~i~~~d~~~~----------------~~~~~~~l~~~~~~--~~~~~~-SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          115 QWSPDAQRLLFPLGGELYLYDLKQE----------------GKAAVRQLTHGEGF--ATDAKL-SPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             EECTTSSEEEEEETTEEEEEESSSC----------------STTSCCBCCCSSSC--EEEEEE-CTTSSEEEEEE-TTEE
T ss_pred             EECCCCCEEEEEeCCcEEEEECCCC----------------CcceEEEcccCCcc--cccccC-CCCCCEEEEEe-CCcE
Confidence            9999999999877799999999865                1  33445555544  889996 99999999887 4699


Q ss_pred             EEEecCCCceEEEEeccccc----------------ceEeEEcCCCCeEEEEecCC------------------------
Q 023246          146 FIWKKKGGKLVRLMVGDRHV----------------VNQLEPHPHIPMFATCGIEK------------------------  185 (285)
Q Consensus       146 ~vwd~~~~~~~~~~~~h~~~----------------v~~~~~~p~~~~l~t~~~d~------------------------  185 (285)
                      ++||+.+++.......+...                +..++|+|+|++|++++.|+                        
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            99999988766544433322                47899999999999988765                        


Q ss_pred             ---------cEEEEcCCC-CCCCCCC---CCcccceeeccccCCCceEEEeC-----CCCeEEEEEecccccceeE
Q 023246          186 ---------TVKLWAPMP-TDFPPLP---DNAEKIMKANKQGREDHSRITLT-----PDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       186 ---------~i~iwd~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s-----~d~~i~vwd~~~~~~~~~~  243 (285)
                               .|++||+.+ ++...+.   .+...+....|  ++++.++..+     .+..|++||+.+++.....
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence                     789999988 7653332   34455556655  5555555433     3578999999887654433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=1.5e-18  Score=139.84  Aligned_cols=199  Identities=13%  Similarity=0.183  Sum_probs=130.4

Q ss_pred             cceeEEEEcCCCCcEEEEeeCC-CcEEEEEcc--CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSD-EYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      ..+.+++|+|++ .+|++++.+ +.|++|++.  +++..            ....+ ..+. .+..++|+|++++|++ +
T Consensus        38 ~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~------------~~~~~-~~~~-~~~~~~~s~dg~~l~~~~  102 (343)
T 1ri6_A           38 GQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALT------------FAAES-ALPG-SLTHISTDHQGQFVFVGS  102 (343)
T ss_dssp             SCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE------------EEEEE-ECSS-CCSEEEECTTSSEEEEEE
T ss_pred             CCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCcee------------ecccc-ccCC-CCcEEEEcCCCCEEEEEe
Confidence            357789999986 677777765 999999997  44321            11111 2222 6789999999997655 4


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCC-CceE
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKG-GKLV  156 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~-~~~~  156 (285)
                      . ++.|.+||+..+.             ..+....+..+. .  +.+++| +|+++++++++ .++.|++||+.+ ++..
T Consensus       103 ~~~~~i~~~d~~~~~-------------~~~~~~~~~~~~-~--~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A          103 YNAGNVSVTRLEDGL-------------PVGVVDVVEGLD-G--CHSANI-SPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             TTTTEEEEEEEETTE-------------EEEEEEEECCCT-T--BCCCEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cCCCeEEEEECCCCc-------------cccccccccCCC-C--ceEEEE-CCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            4 8899999994220             002333343332 2  788886 99999887776 899999999987 6543


Q ss_pred             E----EEec-ccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCC--CCCC------CCCCC---cccceeeccccCCCc-
Q 023246          157 R----LMVG-DRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP--TDFP------PLPDN---AEKIMKANKQGREDH-  218 (285)
Q Consensus       157 ~----~~~~-h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~--~~~~------~~~~~---~~~~~~~~~~~~~~~-  218 (285)
                      .    .+.. ....+..++|+|++++++.+ ..++.|.+|++..  +.+.      .+...   ...+..+.+ .++++ 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~  244 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI-TPDGRH  244 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE-CTTSSE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE-CCCCCE
Confidence            2    2232 23478889999999976555 4789999999953  3321      11111   111222333 34444 


Q ss_pred             eEEEeCCCCeEEEEEec
Q 023246          219 SRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~  235 (285)
                      ++++...++.|.+|++.
T Consensus       245 l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          245 LYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEecCCCEEEEEEEc
Confidence            44577789999999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.84  E-value=3.8e-19  Score=152.07  Aligned_cols=197  Identities=10%  Similarity=-0.004  Sum_probs=145.4

Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEE
Q 023246           10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE   88 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd   88 (285)
                      +|+|++ .++++++.|++|.+||..++++              ...+..++.  +..++|+|+|++|+++ .|++|.+||
T Consensus       144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~--------------~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D  206 (543)
T 1nir_A          144 DLDLPN-LFSVTLRDAGQIALVDGDSKKI--------------VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMID  206 (543)
T ss_dssp             CCCGGG-EEEEEEGGGTEEEEEETTTCCE--------------EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             ccCCCC-EEEEEEcCCCeEEEEECCCceE--------------EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEE
Confidence            488875 8899999999999999998873              222212333  8899999999988885 589999999


Q ss_pred             c--CCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC----CCcEEEEecC-CCeEEEEecCCCceEEEEec
Q 023246           89 K--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP----NDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        89 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +  .+.                +.+..+....   .+..++| +|    +++++++++. +++|.+||..+++++..+..
T Consensus       207 ~~~~t~----------------~~~~~i~~g~---~p~~va~-sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          207 LWAKEP----------------TKVAEIKIGI---EARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  266 (543)
T ss_dssp             TTSSSC----------------EEEEEEECCS---EEEEEEE-CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             CcCCCC----------------cEEEEEecCC---CcceEEe-CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc
Confidence            9  655                5666666432   2788997 99    9999988874 89999999999999988864


Q ss_pred             c----------c-ccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCC--CCCCcccceeeccccCCCceE-EEeCCC
Q 023246          162 D----------R-HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSR-ITLTPD  226 (285)
Q Consensus       162 h----------~-~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~s~d  226 (285)
                      +          . ..+..+.++|++.. +++...++.|.+||+...+...  ...+...+.... ..++++++ ++...+
T Consensus       267 ~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~-~spdg~~l~va~~~~  345 (543)
T 1nir_A          267 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGG-WDSSHRYFMTAANNS  345 (543)
T ss_dssp             CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEE-ECTTSCEEEEEEGGG
T ss_pred             cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCce-ECCCCCEEEEEecCC
Confidence            2          2 36889999998776 6677789999999997654321  111222222222 24455554 556678


Q ss_pred             CeEEEEEecccccceeEe
Q 023246          227 VIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       227 ~~i~vwd~~~~~~~~~~~  244 (285)
                      ++|.+||..+++....+.
T Consensus       346 ~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          346 NKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             TEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCeEEEeec
Confidence            999999999887766554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=9.3e-20  Score=161.47  Aligned_cols=197  Identities=9%  Similarity=0.039  Sum_probs=140.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc---ceEEEEEecCCCEEEEec-
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI---HITGLAYSNTSELLISYN-   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~i~~s~~~~~l~s~~-   80 (285)
                      .+.+++|+|++ .++++ +.||+|++||+.+++..              ..+ ..|..   .|.+++|||||++|+++. 
T Consensus        18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~--------------~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~   80 (723)
T 1xfd_A           18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTST--------------VLI-EGKKIESLRAIRYEISPDREYALFSYN   80 (723)
T ss_dssp             CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCE--------------EEE-CTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred             cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEE--------------EEe-ccccccccccceEEECCCCCEEEEEec
Confidence            46789999986 66665 78999999999988631              111 33433   489999999999888854 


Q ss_pred             C---------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEEEEecCCCeEEEE
Q 023246           81 D---------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        81 d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw  148 (285)
                      +         +.+++||+.++                +. ..+.   .+...  +..++| +|+|+.|+.++. +.|++|
T Consensus        81 ~~~~~~~~~~~~i~~~d~~~~----------------~~-~~l~~~~~~~~~--~~~~~~-SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           81 VEPIYQHSYTGYYVLSKIPHG----------------DP-QSLDPPEVSNAK--LQYAGW-GPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             CCCCSSSCCCSEEEEEESSSC----------------CC-EECCCTTCCSCC--CSBCCB-CSSTTCEEEEET-TEEEEE
T ss_pred             CccceeecceeeEEEEECCCC----------------ce-EeccCCcccccc--ccccEE-CCCCCEEEEEEC-CeEEEE
Confidence            2         78999999876                22 3333   23222  777886 999999999886 899999


Q ss_pred             ecCCCceEEEEecccccc------------------eEeEEcCCCCeEEEEecCC-------------------------
Q 023246          149 KKKGGKLVRLMVGDRHVV------------------NQLEPHPHIPMFATCGIEK-------------------------  185 (285)
Q Consensus       149 d~~~~~~~~~~~~h~~~v------------------~~~~~~p~~~~l~t~~~d~-------------------------  185 (285)
                      |+.+++.......+...+                  .+++|+|+|++|++++.|+                         
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            999888776665544433                  7899999999999887553                         


Q ss_pred             ---------cEEEEcCCCCCC-CCCCCC------cccceeeccccCCCceEEEeC----CCCeEEEEEecccccc
Q 023246          186 ---------TVKLWAPMPTDF-PPLPDN------AEKIMKANKQGREDHSRITLT----PDVIMHVLRLQRRQTL  240 (285)
Q Consensus       186 ---------~i~iwd~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~s----~d~~i~vwd~~~~~~~  240 (285)
                               .|++||+.++.. ..+..+      ...+....+ +++++++++.+    .+..|++||+.+++..
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~  293 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW-ATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE-SSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE-eCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence                     799999987763 444432      233334443 55666665543    3368999998876543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=1.9e-18  Score=138.88  Aligned_cols=193  Identities=6%  Similarity=0.036  Sum_probs=133.7

Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-CCcEEEE
Q 023246           10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DELVYLF   87 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d~~i~iw   87 (285)
                      .|.+++..++++.+.++.|++||+.+++..              ..+ ..+...+ .++|+|+++++++ +. ++.|.+|
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--------------~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~   67 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL--------------NQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQI   67 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE--------------EEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee--------------eeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEE
Confidence            456655577889999999999999988732              222 2234455 9999999985555 44 8899999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCC-ceEeecccCceeeeeEEEecCCCcEEEEecCCC---eEEEEecCCCceEEEEeccc
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~~~~~~~~h~  163 (285)
                      |..++                +. ...+..+..+  ..+++| +|++++++++..++   .|.+||+.+++.+..+..+ 
T Consensus        68 d~~~~----------------~~~~~~~~~~~~~--~~~~~~-s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-  127 (331)
T 3u4y_A           68 ETQLE----------------PPKVVAIQEGQSS--MADVDI-TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-  127 (331)
T ss_dssp             ECSSS----------------SCEEEEEEECSSC--CCCEEE-CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-
T ss_pred             ECCCC----------------ceeEEecccCCCC--ccceEE-CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-
Confidence            99877                44 5555555543  444887 99999999666553   9999999999988877654 


Q ss_pred             ccceEeEEcCCCCeEEEE-ecCCc-EEEEcCCCCCCC-----CCCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEec
Q 023246          164 HVVNQLEPHPHIPMFATC-GIEKT-VKLWAPMPTDFP-----PLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~-~~d~~-i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~  235 (285)
                      ..+..++|+|++++++++ ..++. |.+|++......     ...........+.+ .++++ ++++...++.|++||+.
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF-TPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEE-CTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEE-CCCCCEEEEEeCCCCeEEEEECC
Confidence            456899999999865554 55588 999998643211     11111122233332 34444 56677789999999998


Q ss_pred             cccc
Q 023246          236 RRQT  239 (285)
Q Consensus       236 ~~~~  239 (285)
                      +++.
T Consensus       207 ~~~~  210 (331)
T 3u4y_A          207 NPEN  210 (331)
T ss_dssp             STTS
T ss_pred             CCcc
Confidence            8776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=1.8e-18  Score=138.91  Aligned_cols=198  Identities=5%  Similarity=-0.029  Sum_probs=132.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C-C
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-E   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d-~   82 (285)
                      .+ +++|+|++..+++++..++.|.+||+.+++..             ...+ ..+..+..+++|+|++++++++. + +
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-------------~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~  106 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-------------VVAI-QEGQSSMADVDITPDDQFAVTVTGLNH  106 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-------------EEEE-EECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-------------EEec-ccCCCCccceEECCCCCEEEEecCCCC
Confidence            45 89999987435555555899999999987620             1111 33444555599999999888654 3 3


Q ss_pred             --cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCe-EEEEecCCCceEE-
Q 023246           83 --LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGH-LFIWKKKGGKLVR-  157 (285)
Q Consensus        83 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~-v~vwd~~~~~~~~-  157 (285)
                        .|.+||+.++                +.+..+..+..   ..+++| +|+++++++ ...++. |.+|++.....+. 
T Consensus       107 ~~~i~v~d~~~~----------------~~~~~~~~~~~---~~~~~~-spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A          107 PFNMQSYSFLKN----------------KFISTIPIPYD---AVGIAI-SPNGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             SCEEEEEETTTT----------------EEEEEEECCTT---EEEEEE-CTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             cccEEEEECCCC----------------CeEEEEECCCC---ccceEE-CCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence              8999999877                45565554432   678997 999985554 455577 9999987544331 


Q ss_pred             ---EEecccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCC---C-CCCCCcccceeeccccCCCce-EEEeCCCCe
Q 023246          158 ---LMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF---P-PLPDNAEKIMKANKQGREDHS-RITLTPDVI  228 (285)
Q Consensus       158 ---~~~~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~-~~~~s~d~~  228 (285)
                         ........+..++|+|+++++ +++..++.|++||+..++.   . .+. ....+..+. ..+++++ +++...++.
T Consensus       167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~-~spdg~~l~v~~~~~~~  244 (331)
T 3u4y_A          167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIV-VSRDGSTVYVLTESTVD  244 (331)
T ss_dssp             EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEE-ECTTSSEEEEECSSEEE
T ss_pred             cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEE-ECCCCCEEEEEEcCCCE
Confidence               122334568899999999975 4455689999999987664   2 222 122222232 2445554 455556789


Q ss_pred             EEEEEeccccc
Q 023246          229 MHVLRLQRRQT  239 (285)
Q Consensus       229 i~vwd~~~~~~  239 (285)
                      |.+||+.+++.
T Consensus       245 i~~~d~~~~~~  255 (331)
T 3u4y_A          245 VFNFNQLSGTL  255 (331)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCce
Confidence            99999987655

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=2.3e-18  Score=139.36  Aligned_cols=206  Identities=10%  Similarity=0.017  Sum_probs=145.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeC-------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGS-------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL   76 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l   76 (285)
                      ..+..++|+|++ .++++++.       ++.|.+||..+++....              + . ....+..++|+|+|+++
T Consensus        41 ~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--------------~-~-~~~~~~~~~~s~dg~~l  103 (353)
T 3vgz_A           41 KGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQA--------------I-H-NDLKPFGATINNTTQTL  103 (353)
T ss_dssp             SSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEE--------------E-E-ESSCCCSEEEETTTTEE
T ss_pred             cCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE--------------E-e-cCCCcceEEECCCCCEE
Confidence            356789999986 56666553       57899999998863221              1 1 12346789999999855


Q ss_pred             E-Eec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-------eeeeeEEEecCCCcEEEEec--CCCeE
Q 023246           77 I-SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDEYVMSGS--DCGHL  145 (285)
Q Consensus        77 ~-s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~--~dg~v  145 (285)
                      + +.. ++.|.+||..++                +.+..+..+...       ..+.++.| +|+++++++++  .++.|
T Consensus       104 ~v~~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTG----------------EVKGRLVLDDRKRTEEVRPLQPRELVA-DDATNTVYISGIGKESVI  166 (353)
T ss_dssp             EEEETTTTEEEEEETTTC----------------CEEEEEESCCCCCCSSCCCCEEEEEEE-ETTTTEEEEEEESSSCEE
T ss_pred             EEEecCCCEEEEEeCCCC----------------eeEEEEecCCCccccccCCCCCceEEE-CCCCCEEEEEecCCCceE
Confidence            4 444 799999999887                555666543321       12677887 99998777665  58899


Q ss_pred             EEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCCC----CcccceeeccccCCCc-e
Q 023246          146 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPD----NAEKIMKANKQGREDH-S  219 (285)
Q Consensus       146 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~----~~~~~~~~~~~~~~~~-~  219 (285)
                      .+||+.+++.+..+..+...+..++|+|+++++++++.++.|.+||+.+++.. .+..    +......+.+ .++++ +
T Consensus       167 ~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l  245 (353)
T 3vgz_A          167 WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL-DTARQRA  245 (353)
T ss_dssp             EEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE-ETTTTEE
T ss_pred             EEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE-CCCCCEE
Confidence            99999999998888766667899999999999999999999999999877532 2211    1222222333 33444 5


Q ss_pred             EEEeCCCCeEEEEEecccccceeEe
Q 023246          220 RITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +++...++.|.+||+.+++.+..+.
T Consensus       246 ~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEE
Confidence            5556667999999998877655543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.82  E-value=1.2e-18  Score=149.08  Aligned_cols=210  Identities=11%  Similarity=0.141  Sum_probs=151.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-CC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d~   82 (285)
                      .+.++.++|+++.++++...+++|.+||+.+.+...            ...  ..+...+..+.|+|+|++|++ +. ++
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~------------~~~--i~~~~~~~~~~~spdg~~l~va~~~~~  346 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT------------VTS--IGAAPFLHDGGWDSSHRYFMTAANNSN  346 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE------------EEE--EECCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce------------eEE--eccCcCccCceECCCCCEEEEEecCCC
Confidence            678999999887888888999999999998765211            011  123456778999999997655 44 89


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEec-CCCeEEEEecCC-------C
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGS-DCGHLFIWKKKG-------G  153 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~-~dg~v~vwd~~~-------~  153 (285)
                      +|.+||..++                +++..+.....+..-....|.+|+ +..++++. .|++|.+||+.+       .
T Consensus       347 ~v~v~D~~tg----------------~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~  410 (543)
T 1nir_A          347 KVAVIDSKDR----------------RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  410 (543)
T ss_dssp             EEEEEETTTT----------------EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             eEEEEECCCC----------------eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence            9999999987                666666642211111223333566 66667765 689999999988       8


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEe-------cCCcEEEEcCCCCCCC-CC---------CCCcccceeeccccCC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCG-------IEKTVKLWAPMPTDFP-PL---------PDNAEKIMKANKQGRE  216 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-------~d~~i~iwd~~~~~~~-~~---------~~~~~~~~~~~~~~~~  216 (285)
                      +++.++..|.+.+..++++|++++|++++       .+++|.+||+.+.+.. +.         ..+...+.........
T Consensus       411 ~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g  490 (543)
T 1nir_A          411 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  490 (543)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred             eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence            89999999988899999999999999987       3779999999877643 21         2344555555443333


Q ss_pred             CceEEEe----CCCCeEEEEEecccccceeEe
Q 023246          217 DHSRITL----TPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       217 ~~~~~~~----s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ...+++.    +.++.|.|||..+.+.+..+.
T Consensus       491 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          491 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             SEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            3344442    357999999999987776654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.81  E-value=2.6e-18  Score=138.09  Aligned_cols=205  Identities=9%  Similarity=0.018  Sum_probs=140.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-----
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-----   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-----   79 (285)
                      .+..++|+|++..+++++..++.|.+||+.+++....+..         .. ...|...+..++|+|+|++|+++     
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~  104 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL---------ST-PEERVKSLFGAALSPDGKTLAIYESPVR  104 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC---------CB-TTEEEECTTCEEECTTSSEEEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEc---------CC-cccccccccceEECCCCCEEEEEecccc
Confidence            4788999998745667777789999999988763221110         00 00123356789999999877775     


Q ss_pred             --------cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           80 --------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        80 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                              .++.|.+||+.++                +....+... ..  +..++| +|++++++++  ++.|++||+.
T Consensus       105 ~~~~~~~~~~~~i~v~d~~~~----------------~~~~~~~~~-~~--~~~~~~-s~dg~~l~~~--~~~i~~~d~~  162 (337)
T 1pby_B          105 LELTHFEVQPTRVALYDAETL----------------SRRKAFEAP-RQ--ITMLAW-ARDGSKLYGL--GRDLHVMDPE  162 (337)
T ss_dssp             ECSSCEEECCCEEEEEETTTT----------------EEEEEEECC-SS--CCCEEE-CTTSSCEEEE--SSSEEEEETT
T ss_pred             cccccccccCceEEEEECCCC----------------cEEEEEeCC-CC--cceeEE-CCCCCEEEEe--CCeEEEEECC
Confidence                    4699999999876                455555432 22  677886 9999988777  5789999988


Q ss_pred             CCceEEEEeccc------------------------------------------------------------------cc
Q 023246          152 GGKLVRLMVGDR------------------------------------------------------------------HV  165 (285)
Q Consensus       152 ~~~~~~~~~~h~------------------------------------------------------------------~~  165 (285)
                      +++.+..+..+.                                                                  ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  242 (337)
T 1pby_B          163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence            877665443221                                                                  22


Q ss_pred             ceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +..++|+|++++++++  ++.|.+||+.+++. ..+. ....+..+.+ .++++++++++.++.|++||+.+.+.+..+.
T Consensus       243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~-s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNV-STDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE-CTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             eeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEE-CCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            4468999999998887  68999999987653 2222 1122333322 4455667777889999999999887766554


Q ss_pred             e
Q 023246          245 R  245 (285)
Q Consensus       245 ~  245 (285)
                      .
T Consensus       319 ~  319 (337)
T 1pby_B          319 L  319 (337)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=6.2e-19  Score=155.81  Aligned_cols=195  Identities=11%  Similarity=0.036  Sum_probs=138.0

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      ..|.+++|+|+ ..++++  .++.|++||+.+++..               .+ ..+...+..++|+|+|+.|+.+.++.
T Consensus        82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~---------------~l-~~~~~~~~~~~~SpdG~~la~~~~~~  142 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVT---------------YL-FDTNEETASLDFSPVGDRVAYVRNHN  142 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEE---------------EE-ECCTTCCTTCEECTTSSEEEEEETTE
T ss_pred             cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceE---------------Ec-cCCcccccCCcCCCCCCEEEEEECCe
Confidence            46999999997 455554  3599999999877521               11 23455678899999999999988999


Q ss_pred             EEEEEcCC-----CCCCCCCCCCCccccCCCCceEeecccCc------------eeeeeEEEecCCCcEEEEec------
Q 023246           84 VYLFEKNM-----GLGPSPLSLSPEDLQKREEPQVYSGHRNS------------QTVKGVNFFGPNDEYVMSGS------  140 (285)
Q Consensus        84 i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~l~~~~------  140 (285)
                      |++|++.+     +                +.......+...            ..+.++.| +|+|++|++++      
T Consensus       143 i~v~~~~~~~~~~g----------------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~-SpDg~~la~~~~d~~~~  205 (706)
T 2z3z_A          143 LYIARGGKLGEGMS----------------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFW-SPKGSCLAFYRMDQSMV  205 (706)
T ss_dssp             EEEEECBCTTSCCC----------------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEE-CTTSSEEEEEEEECTTS
T ss_pred             EEEEecCcccccCC----------------CcEEeccCCCCCeEcccchhhhhcCCCceEEE-CCCCCEEEEEEECCCCC
Confidence            99999987     5                222212211111            11477886 99999999887      


Q ss_pred             ---------------------------CCCeEEEEecCCCceEEEEe--cccccceEeEEcCCCCeEEEEecCC-----c
Q 023246          141 ---------------------------DCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEK-----T  186 (285)
Q Consensus       141 ---------------------------~dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~t~~~d~-----~  186 (285)
                                                 .+..|++||+.+++......  .|...+..++|+|++++|++++.++     .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  285 (706)
T 2z3z_A          206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK  285 (706)
T ss_dssp             CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred             ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence                                       45789999999887654432  4667799999999999999888776     8


Q ss_pred             EEEEcCCCC-CCCCCCC--Cccc---ceeeccccC--CCceEEEeCCCCeEEEEEec
Q 023246          187 VKLWAPMPT-DFPPLPD--NAEK---IMKANKQGR--EDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       187 i~iwd~~~~-~~~~~~~--~~~~---~~~~~~~~~--~~~~~~~~s~d~~i~vwd~~  235 (285)
                      |++||+.++ ....+..  ....   +.... +.+  +++++++++.++.+++|.+.
T Consensus       286 v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLT-FLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             EEEEETTTCCEEEEEEEEECSSCCCCCSCCE-ECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEEECCCCceeeEEEEccCCCeECccCCce-eecCCCCEEEEEEccCCccEEEEEE
Confidence            999999887 3322211  1111   11222 344  66688888889999999886

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.80  E-value=1.3e-18  Score=154.66  Aligned_cols=194  Identities=7%  Similarity=0.003  Sum_probs=139.4

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCC---cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      .|.+++||||+ .+|++++. +.|++||+.++   +..                .+..|...+..++|||+|++|+.+.+
T Consensus       110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~----------------~l~~~~~~~~~~~~SPDG~~la~~~~  171 (741)
T 2ecf_A          110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVR----------------QLTHGEGFATDAKLSPKGGFVSFIRG  171 (741)
T ss_dssp             ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCC----------------BCCCSSSCEEEEEECTTSSEEEEEET
T ss_pred             CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEE----------------EcccCCcccccccCCCCCCEEEEEeC
Confidence            48899999986 78888776 99999999877   311                11456778999999999999999888


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc--------------eeeeeEEEecCCCcEEEEecCCC----
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------------QTVKGVNFFGPNDEYVMSGSDCG----  143 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~~l~~~~~dg----  143 (285)
                      +.|++||+.++                +.......+...              ..+..+.| +|+|++|++++.|+    
T Consensus       172 ~~i~~~d~~~g----------------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~-SpDg~~l~~~~~d~~~~~  234 (741)
T 2ecf_A          172 RNLWVIDLASG----------------RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW-APDDSAIAYARIDESPVP  234 (741)
T ss_dssp             TEEEEEETTTT----------------EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE-CTTSSCEEEEEEECTTSC
T ss_pred             CcEEEEecCCC----------------CEEEeccCCccceeccccceeeeeccccccceEE-CCCCCEEEEEEEcCCCCc
Confidence            89999999876                222222222111              01367886 99999999887665    


Q ss_pred             -----------------------------eEEEEecCC-CceEEEEe--cccccceEeEEcCCCCeEEEEec-----CCc
Q 023246          144 -----------------------------HLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGI-----EKT  186 (285)
Q Consensus       144 -----------------------------~v~vwd~~~-~~~~~~~~--~h~~~v~~~~~~p~~~~l~t~~~-----d~~  186 (285)
                                                   .|++||+.+ ++......  .|...+..++| |++++|+.++.     +..
T Consensus       235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~  313 (741)
T 2ecf_A          235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD  313 (741)
T ss_dssp             EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred             eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence                                         899999998 87655443  37788999999 99999887654     568


Q ss_pred             EEEEcCCCCCCCCCCC-Ccc----cceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          187 VKLWAPMPTDFPPLPD-NAE----KIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       187 i~iwd~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      |++||+.++....+.. +..    .+.... ++++++++++++.++.+++|.+.
T Consensus       314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          314 LVEVTLASNQQRVLAHETSPTWVPLHNSLR-FLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCSCCE-ECTTSCEEEEECTTSSCEEEEEC
T ss_pred             EEEEECCCCceEEEEEcCCCCcCCcCCceE-ECCCCeEEEEecCCCccEEEEEc
Confidence            9999998876433221 111    111222 34556688888889988888776

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=2.8e-18  Score=135.12  Aligned_cols=178  Identities=11%  Similarity=0.125  Sum_probs=126.2

Q ss_pred             EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCC-CCCCCCCC
Q 023246           21 VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNM-GLGPSPLS   99 (285)
Q Consensus        21 tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~   99 (285)
                      .++.|++|++||+.+++.              . .+ ..|...|.+++|+|++++|+++.++.|++||+.+ +       
T Consensus        17 ~~~~~~~i~~~d~~~~~~--------------~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~-------   73 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM--------------R-VV-WQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP-------   73 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE--------------E-EE-EEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC-------
T ss_pred             CCCcceeEEEEeCCCCce--------------e-ee-ccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC-------
Confidence            456789999999988752              1 11 3577889999999999999998899999999987 5       


Q ss_pred             CCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec--CC--CeEEEEecCCCceEEEEecccccceEeEEcCCC
Q 023246          100 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DC--GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  175 (285)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d--g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  175 (285)
                               +....+..+.. ..+.+++| +|+++++++++  .+  ..|..+++.+++ ...+..+ ..+..++|+|++
T Consensus        74 ---------~~~~~~~~~~~-~~~~~~~~-spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg  140 (297)
T 2ojh_A           74 ---------SPEKVDTGFAT-ICNNDHGI-SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDG  140 (297)
T ss_dssp             ---------SCEECCCTTCC-CBCSCCEE-CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTS
T ss_pred             ---------CceEecccccc-ccccceEE-CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCC
Confidence                     34444434421 23888996 99999999988  33  455555556554 3444433 358899999999


Q ss_pred             CeEE-EEecCCcEEEEcC--CCCCCCCCCCCcccceeeccccCCCceE-EEeCCCCeEEEEEec
Q 023246          176 PMFA-TCGIEKTVKLWAP--MPTDFPPLPDNAEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQ  235 (285)
Q Consensus       176 ~~l~-t~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~i~vwd~~  235 (285)
                      ++|+ +++.++.+++|++  .++....+..+...+....+ .+++..+ +++..++.+++|++.
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDY-SPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEE-CTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceE-CCCCCEEEEEecCCCCccEEEEC
Confidence            9876 7788999999985  44454455555555555554 4445444 455568999999986

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=2.1e-18  Score=152.84  Aligned_cols=162  Identities=12%  Similarity=0.012  Sum_probs=120.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC---------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL   75 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~   75 (285)
                      .|.+++||||+ .+|++++.+         +.+.+||+.+++..            ... ...+|...+..++|||+|+.
T Consensus        62 ~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------------~l~-~~~~~~~~~~~~~~SPdG~~  127 (723)
T 1xfd_A           62 RAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ------------SLD-PPEVSNAKLQYAGWGPKGQQ  127 (723)
T ss_dssp             TCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCE------------ECC-CTTCCSCCCSBCCBCSSTTC
T ss_pred             ccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCceE------------ecc-CCccccccccccEECCCCCE
Confidence            48899999986 788888764         77889999987631            011 11355666889999999999


Q ss_pred             EEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCce----------------eeeeEEEecCCCcEEEEe
Q 023246           76 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ----------------TVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        76 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~  139 (285)
                      |+.++++.|++|++.++                +.......+....                .+.+++| +|+|++|+++
T Consensus       128 la~~~~~~i~~~~~~~g----------------~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~-SpDg~~la~~  190 (723)
T 1xfd_A          128 LIFIFENNIYYCAHVGK----------------QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW-SPDGTRLAYA  190 (723)
T ss_dssp             EEEEETTEEEEESSSSS----------------CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE-CTTSSEEEEE
T ss_pred             EEEEECCeEEEEECCCC----------------ceEEEecCCCCCceECcccceeEEEEeccCcceEEE-CCCCCEEEEE
Confidence            99988899999999876                3433333322210                1267886 9999999988


Q ss_pred             cCCC----------------------------------eEEEEecCCCceEEEEecc------cccceEeEEcCCCCeEE
Q 023246          140 SDCG----------------------------------HLFIWKKKGGKLVRLMVGD------RHVVNQLEPHPHIPMFA  179 (285)
Q Consensus       140 ~~dg----------------------------------~v~vwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~~l~  179 (285)
                      +.++                                  .|++||+.+++....+..+      ...+..++|+|++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence            7543                                  7999999988865666544      56789999999999887


Q ss_pred             EEec----CCcEEEEcCCCCCC
Q 023246          180 TCGI----EKTVKLWAPMPTDF  197 (285)
Q Consensus       180 t~~~----d~~i~iwd~~~~~~  197 (285)
                      +...    +..|++||+.+++.
T Consensus       271 ~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          271 TWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             EEEETTSCEEEEEEEETTTCCE
T ss_pred             EEEcCCCCeEEEEEEeCCCCcc
Confidence            7653    35799999988764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.1e-17  Score=135.05  Aligned_cols=202  Identities=8%  Similarity=0.005  Sum_probs=136.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCC-----CcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-----NIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+..++|+|++..+++++..++.|.+||+.+++....              +...+     ...+..++|+|+|++|+++
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~--------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~  109 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH--------------ANLSSVPGEVGRSMYSFAISPDGKEVYAT  109 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------------EESCCSTTEEEECSSCEEECTTSSEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE--------------EEcccccccccccccceEECCCCCEEEEE
Confidence            4678999998744556667789999999998763211              10111     2346789999999988775


Q ss_pred             c-C------------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEE
Q 023246           80 N-D------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF  146 (285)
Q Consensus        80 ~-d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~  146 (285)
                      . +            +.|.+||+.++.             ..+.+..+..+.   .+.+++| +|+++ +++++.  .|+
T Consensus       110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~~~~~~~---~~~~~~~-s~dg~-l~~~~~--~i~  169 (349)
T 1jmx_B          110 VNPTQRLNDHYVVKPPRLEVFSTADGL-------------EAKPVRTFPMPR---QVYLMRA-ADDGS-LYVAGP--DIY  169 (349)
T ss_dssp             EEEEEECSSCEEECCCEEEEEEGGGGG-------------GBCCSEEEECCS---SCCCEEE-CTTSC-EEEESS--SEE
T ss_pred             cccccccccccccCCCeEEEEECCCcc-------------ccceeeeccCCC---cccceeE-CCCCc-EEEccC--cEE
Confidence            4 4            899999998741             002333443332   2788887 99999 555543  399


Q ss_pred             EEecCCCceEEEEeccc---------------------------------------------------------------
Q 023246          147 IWKKKGGKLVRLMVGDR---------------------------------------------------------------  163 (285)
Q Consensus       147 vwd~~~~~~~~~~~~h~---------------------------------------------------------------  163 (285)
                      +||+.+++.+..+..+.                                                               
T Consensus       170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (349)
T 1jmx_B          170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  249 (349)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence            99999888777665321                                                               


Q ss_pred             -----ccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          164 -----HVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       164 -----~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                           ..+..++|+| ++++++++  ++.|.+||+.+++. ..+. ....+..+.+ .++++++++++.++.|++||+.+
T Consensus       250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~-s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAF-DKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE-CSSSSCEEEESBSSEEEEEETTT
T ss_pred             cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEE-CCCCCEEEEecCCCeEEEEeccc
Confidence                 1345677889 99998887  78999999987764 2222 1122233332 44555666678889999999988


Q ss_pred             cccceeEe
Q 023246          237 RQTLAYRE  244 (285)
Q Consensus       237 ~~~~~~~~  244 (285)
                      .+.+..+.
T Consensus       326 ~~~~~~~~  333 (349)
T 1jmx_B          326 LEKVKNIK  333 (349)
T ss_dssp             TEEEEEEE
T ss_pred             cceeeeee
Confidence            77665544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=8.8e-18  Score=145.28  Aligned_cols=196  Identities=10%  Similarity=0.012  Sum_probs=134.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeC-CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      ..+|.+++|+||| ..||.++. ||+++||++.+++               ...+...+...+..++|+|+ ++++++. 
T Consensus        21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~---------------~~~lt~~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGE---------------TVKLNREPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTE---------------EEECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred             ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCC---------------cEeeecccccccccccCCCC-eEEEEecc
Confidence            3579999999986 78887776 9999999986654               22232334468999999999 7666543 


Q ss_pred             ---CCcEEEEEcCC--CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc--EEEEecCCCeEEEEecCCC
Q 023246           81 ---DELVYLFEKNM--GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus        81 ---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~dg~v~vwd~~~~  153 (285)
                         +....+|.+..  .                .....+.....   +...+| +|+++  .+++++.++ +.+||+.++
T Consensus        84 ~~g~~~~~l~~~~~~~~----------------g~~~~l~~~~~---~~~~~~-s~dg~~~~~~s~~~~~-~~l~d~~~g  142 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRP----------------GEEQRLEAVKP---MRILSG-VDTGEAVVFTGATEDR-VALYALDGG  142 (582)
T ss_dssp             STTSCCEEEEEEETTST----------------TCCEECTTSCS---BEEEEE-EECSSCEEEEEECSSC-EEEEEEETT
T ss_pred             CCCCcceEEEEEeccCC----------------CccccccCCCC---ceeeee-CCCCCeEEEEecCCCC-ceEEEccCC
Confidence               45566666543  2                11122222222   223454 66664  455555555 459999988


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecC----CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCC--
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDV--  227 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~--  227 (285)
                      +.......+ .  .+++|+|+|+++++++.+    +.|++||+.+++...+..+...+....+ +++++.+++...++  
T Consensus       143 ~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~-SpDG~~l~~~~~~~~~  218 (582)
T 3o4h_A          143 GLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASI-SPGMKVTAGLETAREA  218 (582)
T ss_dssp             EEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEE-CTTSCEEEEEECSSCE
T ss_pred             cEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceE-CCCCCEEEEccCCCee
Confidence            765544433 2  889999999999988877    7899999998887777766666655544 66777777777788  


Q ss_pred             eEEEEEecccccc
Q 023246          228 IMHVLRLQRRQTL  240 (285)
Q Consensus       228 ~i~vwd~~~~~~~  240 (285)
                      .|++||+.+++..
T Consensus       219 ~i~~~d~~~~~~~  231 (582)
T 3o4h_A          219 RLVTVDPRDGSVE  231 (582)
T ss_dssp             EEEEECTTTCCEE
T ss_pred             EEEEEcCCCCcEE
Confidence            8999998876554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=2.1e-17  Score=133.42  Aligned_cols=153  Identities=9%  Similarity=0.045  Sum_probs=109.3

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-Ee-cCCcEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVY   85 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~-~d~~i~   85 (285)
                      +++++++ ..++++++.+++|++||+.+++...              .+..+....+..++|+|++++++ ++ .++.|.
T Consensus         4 g~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~~--------------~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~   68 (349)
T 1jmx_B            4 GPALKAG-HEYMIVTNYPNNLHVVDVASDTVYK--------------SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   68 (349)
T ss_dssp             CCCCCTT-CEEEEEEETTTEEEEEETTTTEEEE--------------EEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccCC-CEEEEEeCCCCeEEEEECCCCcEEE--------------EEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence            4577886 4899999999999999999886321              11111112467899999998554 44 489999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccC----ceeeeeEEEecCCCcEEEEecCC------------CeEEEEe
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPNDEYVMSGSDC------------GHLFIWK  149 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~d------------g~v~vwd  149 (285)
                      +||+.++                +....+.....    ...+..++| +|+++++++++.+            +.|.+||
T Consensus        69 ~~d~~t~----------------~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d  131 (349)
T 1jmx_B           69 GIDLDTC----------------KNTFHANLSSVPGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS  131 (349)
T ss_dssp             EEETTTT----------------EEEEEEESCCSTTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             EEeCCCC----------------cEEEEEEcccccccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEE
Confidence            9999876                44445543221    122678887 9999999988865            8999999


Q ss_pred             cCCCce---EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          150 KKGGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       150 ~~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +.+++.   +..+.. ...+.+++|+|+++ ++.++  +.|.+||+.+++
T Consensus       132 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~  177 (349)
T 1jmx_B          132 TADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGK  177 (349)
T ss_dssp             GGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCC
T ss_pred             CCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCc
Confidence            987543   344443 34688999999999 55554  349999997765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=5e-17  Score=130.88  Aligned_cols=186  Identities=8%  Similarity=0.044  Sum_probs=123.9

Q ss_pred             cEEEEeeCCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c-CCcEEEEEcC--C
Q 023246           17 NYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DELVYLFEKN--M   91 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~--~   91 (285)
                      .++++++.|+.|++|++.. ++..            ....  ..|...+.+++|+|++++|+++ . ++.|.+|++.  +
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~   71 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALT------------LTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD   71 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEE------------EEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEE------------Eeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence            4555658899999999963 3210            1111  2356678899999999977775 4 4999999997  3


Q ss_pred             CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecC---CCceEEEEecccccce
Q 023246           92 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK---GGKLVRLMVGDRHVVN  167 (285)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~---~~~~~~~~~~h~~~v~  167 (285)
                      +              ....+..+..+.   .+..++| +|+++++++++ .++.|.+||+.   ..+.+..+..+ ..+.
T Consensus        72 ~--------------~~~~~~~~~~~~---~~~~~~~-s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~  132 (343)
T 1ri6_A           72 G--------------ALTFAAESALPG---SLTHIST-DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCH  132 (343)
T ss_dssp             C--------------CEEEEEEEECSS---CCSEEEE-CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBC
T ss_pred             C--------------ceeeccccccCC---CCcEEEE-cCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCce
Confidence            3              001223343333   3788997 99999776654 58999999994   33445555443 4689


Q ss_pred             EeEEcCCCCeEEEEe-cCCcEEEEcCCC-CCCC-----CCCCC-cccceeeccccCCCc-eEEEeCCCCeEEEEEecc
Q 023246          168 QLEPHPHIPMFATCG-IEKTVKLWAPMP-TDFP-----PLPDN-AEKIMKANKQGREDH-SRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       168 ~~~~~p~~~~l~t~~-~d~~i~iwd~~~-~~~~-----~~~~~-~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~  236 (285)
                      +++|+|+++++++++ .++.|++|++.. +++.     .+... ...+..+.+ .++++ ++++...++.+.+|++..
T Consensus       133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF-HPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE-CTTSSEEEEEETTTTEEEEEESSC
T ss_pred             EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE-CCCCCEEEEEeCCCCEEEEEEecC
Confidence            999999999877777 899999999976 5432     11111 122333333 44444 455666899999999954

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=1.7e-16  Score=140.19  Aligned_cols=200  Identities=11%  Similarity=0.119  Sum_probs=138.2

Q ss_pred             eeEEEEcCCCCcEEEEee---------------------------------CCCcEEEEEccCCcccCCcCCCCCccccc
Q 023246            6 LNAIVIDPRNPNYFAVGG---------------------------------SDEYARVYDIRKCHWYSPISSDTPVDTFC   52 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~   52 (285)
                      +.+++|+||+ .+|++++                                 .+..|.+||+.+++..             
T Consensus       183 ~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-------------  248 (706)
T 2z3z_A          183 EKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-------------  248 (706)
T ss_dssp             CCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-------------
T ss_pred             CceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-------------
Confidence            5889999986 7888877                                 4467999999877521             


Q ss_pred             ccccCCCCCcceEEEEEecCCCEEEEe-cCC-----cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCce---ee
Q 023246           53 PRHLIGKNNIHITGLAYSNTSELLISY-NDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TV  123 (285)
Q Consensus        53 ~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i  123 (285)
                      .......|...+..++|+|+|+.|+++ .++     .|++||+.++                +....+.......   .+
T Consensus       249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g----------------~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG----------------RFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC----------------CEEEEEEEEECSSCCCCC
T ss_pred             eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC----------------ceeeEEEEccCCCeECcc
Confidence            111113567789999999999987774 354     8999999875                2333332211111   13


Q ss_pred             eeEEEecC--CCcEEEEecCCCeEEEEecC-CCceEEEEecccccceE-eEEcCCCCeEEEEec-CC----cEEEEcCCC
Q 023246          124 KGVNFFGP--NDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQ-LEPHPHIPMFATCGI-EK----TVKLWAPMP  194 (285)
Q Consensus       124 ~~~~~~~~--~~~~l~~~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~-~~~~p~~~~l~t~~~-d~----~i~iwd~~~  194 (285)
                      ..+.| +|  +++++++++.++.+++|.+. +++.+..+..|...+.. ++|+|+++.|+.++. ++    .|..|++.+
T Consensus       313 ~~~~~-sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          313 HPLTF-LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             SCCEE-CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             CCcee-ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            56786 99  99999999999999999876 67778888888777876 799999998765554 44    677777777


Q ss_pred             CCCCCCCCCcccceeeccccCCCceEEEe-CCC---CeEEEEEecccc
Q 023246          195 TDFPPLPDNAEKIMKANKQGREDHSRITL-TPD---VIMHVLRLQRRQ  238 (285)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d---~~i~vwd~~~~~  238 (285)
                      +....+. +...+....+ ++++++++.. +.+   +.+++||+.+++
T Consensus       392 ~~~~~l~-~~~~~~~~~~-spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          392 GKTKDLT-PESGMHRTQL-SPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CCCEESC-CSSSEEEEEE-CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCceecc-CCCceEEEEE-CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            6654443 3344444433 4555555443 333   679999988765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.76  E-value=1.2e-16  Score=129.31  Aligned_cols=203  Identities=7%  Similarity=0.071  Sum_probs=127.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeC--CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--c
Q 023246            5 RLNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~--~   80 (285)
                      ....++|+|++ .+++++..  ++.|.+|++.+++..            .... ...+...+..++|+|+|++|+++  .
T Consensus        41 ~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~------------~~~~-~~~~~~~p~~~a~spdg~~l~~~~~~  106 (347)
T 3hfq_A           41 NPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAH------------KLNT-VVAPGTPPAYVAVDEARQLVYSANYH  106 (347)
T ss_dssp             CCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEE------------EEEE-EEEESCCCSEEEEETTTTEEEEEETT
T ss_pred             CcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEE------------Eeee-eecCCCCCEEEEECCCCCEEEEEeCC
Confidence            45679999986 55444432  689999999766521            1111 12355678899999999977764  4


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-------CceeeeeEEEecCCCcEEEEecCCCeEEEEecC-C
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-G  152 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~-~  152 (285)
                      ++.|.+|++....             ....+..+....       ....+.+++| +|+++++++...++.|.+|++. +
T Consensus       107 ~~~v~v~~~~~~g-------------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A          107 KGTAEVMKIAADG-------------ALTLTDTVQHSGHGPRPEQDGSHIHYTDL-TPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             TTEEEEEEECTTS-------------CEEEEEEEECCCCCSSTTCSSCCEEEEEE-CTTSCEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEEeCCCC-------------CeeecceeecCCCCCCccccCCCceEEEE-CCCCcEEEEeCCCCEEEEEEECCC
Confidence            7999999996320             001122221110       0112778887 9999977777789999999998 5


Q ss_pred             CceEE--EEecc-cccceEeEEcCCCCeEEE-EecCCcEEEEcCCC--CCCC---C---CCCC---cccceeeccccCCC
Q 023246          153 GKLVR--LMVGD-RHVVNQLEPHPHIPMFAT-CGIEKTVKLWAPMP--TDFP---P---LPDN---AEKIMKANKQGRED  217 (285)
Q Consensus       153 ~~~~~--~~~~h-~~~v~~~~~~p~~~~l~t-~~~d~~i~iwd~~~--~~~~---~---~~~~---~~~~~~~~~~~~~~  217 (285)
                      ++...  .+..+ ...+..++|+|++++++. ...++.|.+|++..  +.+.   .   ....   ...+..+. ..+++
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-~spdG  251 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR-LSHDG  251 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE-ECTTS
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE-ECCCC
Confidence            54332  22222 236788999999997555 55788999999864  3211   1   1110   01122232 34455


Q ss_pred             ceE-EEeCCCCeEEEEEecc
Q 023246          218 HSR-ITLTPDVIMHVLRLQR  236 (285)
Q Consensus       218 ~~~-~~~s~d~~i~vwd~~~  236 (285)
                      +++ ++...++.|.+|++..
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECG
T ss_pred             CEEEEEeCCCCEEEEEEECC
Confidence            544 6677789999999974

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=1.5e-16  Score=127.72  Aligned_cols=146  Identities=8%  Similarity=0.023  Sum_probs=109.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc-ceEEEEEecCCCEE-EEec-CCcEEEEEcCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELL-ISYN-DELVYLFEKNMGL   93 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~i~~s~~~~~l-~s~~-d~~i~iwd~~~~~   93 (285)
                      .+|++++.+++|++||+.+++..              ..+..++.. .+..++|+|+++.+ +++. ++.|.+||+.++ 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-   66 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE--------------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC-
Confidence            58899999999999999988632              111112221 36789999999755 4444 789999999877 


Q ss_pred             CCCCCCCCCccccCCCCceEeeccc-C--ceeeeeEEEecCCCcEEEEec------------CCCeEEEEecCCCceEEE
Q 023246           94 GPSPLSLSPEDLQKREEPQVYSGHR-N--SQTVKGVNFFGPNDEYVMSGS------------DCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~~l~~~~------------~dg~v~vwd~~~~~~~~~  158 (285)
                                     +.+..+.... .  ...+..++| +|++++++++.            .++.|.+||+.+++.+..
T Consensus        67 ---------------~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  130 (337)
T 1pby_B           67 ---------------ETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             ---------------CEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ---------------CeEeeEEcCCcccccccccceEE-CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence                           4555554321 0  012678887 99999888875            579999999998888877


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +.. ...+..++|+|++++++++  ++.|.+||+.+++
T Consensus       131 ~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B          131 FEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             EEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE
T ss_pred             EeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc
Confidence            764 4568889999999988877  6889999987654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.76  E-value=2e-17  Score=152.16  Aligned_cols=205  Identities=7%  Similarity=-0.056  Sum_probs=146.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe-cCCCEEEEecCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~~d~~   83 (285)
                      .+...+|+|++ ..|+.+ .++.|.+|++...+.. .+......    .......|...+..++|+ |+|+.|+.+.++.
T Consensus       246 ~~~~~~~SpDG-~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~----~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~  318 (1045)
T 1k32_A          246 DYYPRHLNTDG-RRILFS-KGGSIYIFNPDTEKIE-KIEIGDLE----SPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQ  318 (1045)
T ss_dssp             SSCEEEEEESS-SCEEEE-ETTEEEEECTTTCCEE-ECCCCCCC----BCCSEEEECGGGGEEEEEECGGGCEEEEETTE
T ss_pred             CcceeeEcCCC-CEEEEE-eCCEEEEecCCceEee-eeccCccc----ccccccccccccceeeecCCCCCEEEEEEcCE
Confidence            35678999986 677776 5899999998443321 11100000    000001255678999999 9999998877999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEE-EEecCCCceEEEEecc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF-IWKKKGGKLVRLMVGD  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~-vwd~~~~~~~~~~~~h  162 (285)
                      |.+|+...+                 ....+..+.. ..+..++| + +++.++.++.++.+. +|++.+++.. .+..|
T Consensus       319 i~~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~-s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~  377 (1045)
T 1k32_A          319 AFIQDVSGT-----------------YVLKVPEPLR-IRYVRRGG-D-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN  377 (1045)
T ss_dssp             EEEECTTSS-----------------BEEECSCCSC-EEEEEECS-S-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             EEEEcCCCC-----------------ceEEccCCCc-ceEEeeeE-c-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence            999998765                 2333444543 13888986 8 999999988888999 9999877654 44478


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCC----------CeEEE
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPD----------VIMHV  231 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d----------~~i~v  231 (285)
                      ...+..++|+|++++|++++.++.|++||+.+++...+. .+...+....+ ++++++++.++.+          +.|++
T Consensus       378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~-SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI-SDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE-CTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE-CCCCCeEEEEecCccccccCCCCCeEEE
Confidence            788999999999999999999999999999888754433 45555545544 5666667666553          49999


Q ss_pred             EEecccc
Q 023246          232 LRLQRRQ  238 (285)
Q Consensus       232 wd~~~~~  238 (285)
                      ||+.+++
T Consensus       457 ~d~~~g~  463 (1045)
T 1k32_A          457 YDMEGRK  463 (1045)
T ss_dssp             EETTTTE
T ss_pred             EECCCCc
Confidence            9998765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.75  E-value=2.7e-17  Score=151.23  Aligned_cols=191  Identities=8%  Similarity=0.001  Sum_probs=147.8

Q ss_pred             ceeEEEEc-CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc-ceEEEEEecCCCEEEEe-cC
Q 023246            5 RLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI-HITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         5 ~v~~~~~s-~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .|.+++|+ |++ ..|++++ ++.|.+|++.+++.               ..+ ..|.. .+..++|+ +|+.|+.+ .+
T Consensus       297 ~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~  357 (1045)
T 1k32_A          297 SKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYV---------------LKV-PEPLRIRYVRRGGD-TKVAFIHGTRE  357 (1045)
T ss_dssp             GGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBE---------------EEC-SCCSCEEEEEECSS-SEEEEEEEETT
T ss_pred             ccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCce---------------EEc-cCCCcceEEeeeEc-CCCeEEEEECC
Confidence            58899999 986 7777777 78999999986642               112 45666 89999999 99887775 46


Q ss_pred             CcEE-EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           82 ELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        82 ~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ..+. +|++..+                 ....+..+...  +..++| +|++++|++++.++.|++||+.+++....+.
T Consensus       358 ~~l~~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          358 GDFLGIYDYRTG-----------------KAEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEEEEEETTTC-----------------CEEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CceEEEEECCCC-----------------CceEecCCccc--eeeeEE-CCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            7788 8898765                 33344455544  889996 9999999999999999999999999888877


Q ss_pred             cccccceEeEEcCCCCeEEEEecCC----------cEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEK----------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      .|...+..++|+|++++|++++.++          .|++||+.+++...+..+...+....+ .++++.++..+.++...
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~-spdG~~l~~~s~~~~~~  496 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF-DADSKNLYYLSYRSLDP  496 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEE-CTTSCEEEEEESCCCCC
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceE-cCCCCEEEEEecccCCc
Confidence            8999999999999999998887654          899999988776556656555555443 55666777777776666


Q ss_pred             EEEec
Q 023246          231 VLRLQ  235 (285)
Q Consensus       231 vwd~~  235 (285)
                      +|+..
T Consensus       497 ~~~~~  501 (1045)
T 1k32_A          497 SPDRV  501 (1045)
T ss_dssp             EECSS
T ss_pred             Ccchh
Confidence            66543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=2.8e-17  Score=145.53  Aligned_cols=208  Identities=12%  Similarity=0.087  Sum_probs=130.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeC---------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE
Q 023246            5 RLNAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL   75 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~   75 (285)
                      .|.+++||||+ .+|++++.         ++.|++||+.+++....            ..+    ...+..++|||+|+.
T Consensus        61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~------------~~l----~~~~~~~~~SPDG~~  123 (719)
T 1z68_A           61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG------------NEL----PRPIQYLCWSPVGSK  123 (719)
T ss_dssp             TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------------SCC----CSSBCCEEECSSTTC
T ss_pred             ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccccc------------eec----CcccccceECCCCCE
Confidence            38899999986 78887766         78999999998863100            111    235788999999999


Q ss_pred             EEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-------eeeeeEEEecCCCcEEEEecCCC-----
Q 023246           76 LISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDEYVMSGSDCG-----  143 (285)
Q Consensus        76 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~~dg-----  143 (285)
                      |+.+.++.|++|++.++...   .+.    ........+.++...       ....+++| +|+|++|++++.|.     
T Consensus       124 la~~~~~~i~~~~~~~g~~~---~l~----~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w-SPDG~~la~~~~d~~~~~~  195 (719)
T 1z68_A          124 LAYVYQNNIYLKQRPGDPPF---QIT----FNGRENKIFNGIPDWVYEEEMLATKYALWW-SPNGKFLAYAEFNDTDIPV  195 (719)
T ss_dssp             EEEEETTEEEEESSTTSCCE---ECC----CCCBTTTEEESSCCHHHHHHTTCSSCCEEE-CTTSSEEEEEEEECTTSCE
T ss_pred             EEEEECCeEEEEeCCCCCcE---EEe----cCCCcCCeEcccccceeeeecccCcccEEE-CCCCCEEEEEEECCCCCce
Confidence            99988999999999876200   000    000000111122111       00247886 99999999887542     


Q ss_pred             -----------------------------eEEEEecCCCceE---E-----EEecccccceEeEEcCCCCeEEEEecCC-
Q 023246          144 -----------------------------HLFIWKKKGGKLV---R-----LMVGDRHVVNQLEPHPHIPMFATCGIEK-  185 (285)
Q Consensus       144 -----------------------------~v~vwd~~~~~~~---~-----~~~~h~~~v~~~~~~p~~~~l~t~~~d~-  185 (285)
                                                   .|++||+.+++..   .     .+.+|...+..++|+|+++.+++....+ 
T Consensus       196 ~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~  275 (719)
T 1z68_A          196 IAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ  275 (719)
T ss_dssp             EEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST
T ss_pred             EEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc
Confidence                                         7889999887652   1     1235778899999999987777654332 


Q ss_pred             ---cEEEEc----CCCCCCCCCC-----CCcccce-----eeccccCCCceE-E-EeCCCC--eEEEEEecccc
Q 023246          186 ---TVKLWA----PMPTDFPPLP-----DNAEKIM-----KANKQGREDHSR-I-TLTPDV--IMHVLRLQRRQ  238 (285)
Q Consensus       186 ---~i~iwd----~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~-~-~~s~d~--~i~vwd~~~~~  238 (285)
                         .|.+||    +.+++...+.     .+...+.     ... ++++++.+ + +...++  .|++|++..++
T Consensus       276 ~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          276 NVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPV-FSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             TEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCE-ECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccE-ECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence               488899    7766554432     3333332     222 34444433 3 344555  56666665543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=2.6e-17  Score=145.75  Aligned_cols=190  Identities=8%  Similarity=0.129  Sum_probs=128.7

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCc---ceEEEEEecCCCEEEEec----
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI---HITGLAYSNTSELLISYN----   80 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~i~~s~~~~~l~s~~----   80 (285)
                      +++|+|++ .++++ +.|++|++||+.+++..               .+..+|..   .+.+++|||||++|+.+.    
T Consensus        20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~~---------------~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~   82 (719)
T 1z68_A           20 FPNWISGQ-EYLHQ-SADNNIVLYNIETGQSY---------------TILSNRTMKSVNASNYGLSPDRQFVYLESDYSK   82 (719)
T ss_dssp             CCEESSSS-EEEEE-CTTSCEEEEESSSCCEE---------------EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE
T ss_pred             ccEECCCC-eEEEE-cCCCCEEEEEcCCCcEE---------------EEEccccccccceeeEEECCCCCeEEEEecCce
Confidence            68999986 55555 46999999999988621               11122322   388999999999888753    


Q ss_pred             ------CCcEEEEEcCCCCCCCCCCCCCccccCCCCc--eEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC
Q 023246           81 ------DELVYLFEKNMGLGPSPLSLSPEDLQKREEP--QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG  152 (285)
Q Consensus        81 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~  152 (285)
                            ++.|++||+.++                +.+  ..+.   ..  +..++| +|+|+.|+.+. ++.|++|++.+
T Consensus        83 ~~~~s~~~~i~~~d~~~g----------------~~~~~~~l~---~~--~~~~~~-SPDG~~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           83 LWRYSYTATYYIYDLSNG----------------EFVRGNELP---RP--IQYLCW-SPVGSKLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             CSSSCEEEEEEEEETTTT----------------EECCSSCCC---SS--BCCEEE-CSSTTCEEEEE-TTEEEEESSTT
T ss_pred             eEEeecceEEEEEECCCC----------------ccccceecC---cc--cccceE-CCCCCEEEEEE-CCeEEEEeCCC
Confidence                  489999999876                221  1121   22  778886 99999999886 78999999998


Q ss_pred             CceEEEE-eccccc-----------------ceEeEEcCCCCeEEEEecCC-----------------------------
Q 023246          153 GKLVRLM-VGDRHV-----------------VNQLEPHPHIPMFATCGIEK-----------------------------  185 (285)
Q Consensus       153 ~~~~~~~-~~h~~~-----------------v~~~~~~p~~~~l~t~~~d~-----------------------------  185 (285)
                      ++..... .++...                 ..+++|+|||++|++++.|.                             
T Consensus       140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence            8765432 222221                 25899999999999988652                             


Q ss_pred             -----cEEEEcCCCCCCC---C------CCCCcccceeeccccCCCceEEEeCCC----CeEEEEE----ecccc
Q 023246          186 -----TVKLWAPMPTDFP---P------LPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLR----LQRRQ  238 (285)
Q Consensus       186 -----~i~iwd~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~s~d----~~i~vwd----~~~~~  238 (285)
                           .|++||+.++...   .      +.++...+....| +++++++++....    ..|.+||    +.+++
T Consensus       220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTW-VTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEE-SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEE-eCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                 7889999876531   1      1234444555554 4456665553322    3588888    55543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=5.1e-16  Score=137.89  Aligned_cols=199  Identities=8%  Similarity=0.054  Sum_probs=130.0

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C--
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D--   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d--   81 (285)
                      ...+++|+|++ .+++++  |++|++||+.+++....+..          .....+......++|||||++|+.+. +  
T Consensus        18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLEN----------STFDEFGHSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECT----------TTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEec----------hhhhhhcccccceEECCCCCEEEEEECCee
Confidence            46689999986 788876  99999999998873211100          00011122334589999999888864 3  


Q ss_pred             -------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           82 -------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        82 -------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                             +.+.+||+.++                + ...+..+...  +...+| +|+|+.|+.+. ++.|++|++.+++
T Consensus        85 ~~r~~~~~~~~~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-SPdG~~la~~~-~~~i~~~~~~~~~  143 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKR----------------Q-LITEERIPNN--TQWVTW-SPVGHKLAYVW-NNDIYVKIEPNLP  143 (740)
T ss_dssp             CSSSCEEEEEEEEETTTT----------------E-ECCSSCCCTT--EEEEEE-CSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             eEEEccceEEEEEECCCC----------------c-EEEcccCCCc--ceeeEE-CCCCCEEEEEE-CCeEEEEECCCCc
Confidence                   67789999887                2 2334445544  888996 99999998885 6899999998877


Q ss_pred             eEEEE-eccccc-----------------ceEeEEcCCCCeEEEEecCC-------------------------------
Q 023246          155 LVRLM-VGDRHV-----------------VNQLEPHPHIPMFATCGIEK-------------------------------  185 (285)
Q Consensus       155 ~~~~~-~~h~~~-----------------v~~~~~~p~~~~l~t~~~d~-------------------------------  185 (285)
                      ..... .++...                 ...+.|+|||++|+.++.|.                               
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            55421 122221                 23589999999998876432                               


Q ss_pred             -----cEEEEcCCC---C---CCCCCCC------CcccceeeccccCCCceEEEeC----CCCeEEEEEecccc
Q 023246          186 -----TVKLWAPMP---T---DFPPLPD------NAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQRRQ  238 (285)
Q Consensus       186 -----~i~iwd~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~s----~d~~i~vwd~~~~~  238 (285)
                           +|++||+.+   +   +...+..      +...+....| +++++.++...    .+..|++||+.+++
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w-spdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW-ATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEE-EETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEE-eCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                 477788877   5   3223322      3333444444 45555444432    23579999998765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.71  E-value=4.6e-16  Score=134.57  Aligned_cols=190  Identities=10%  Similarity=-0.001  Sum_probs=135.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeC---CCcEEEEEccC--CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LL   76 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l   76 (285)
                      ..|.+++|+|+  .++++++.   +...+||.+..  ..              ....+..  ...+...+|+|+++  .+
T Consensus        65 ~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g--------------~~~~l~~--~~~~~~~~~s~dg~~~~~  126 (582)
T 3o4h_A           65 NSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPG--------------EEQRLEA--VKPMRILSGVDTGEAVVF  126 (582)
T ss_dssp             SEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTT--------------CCEECTT--SCSBEEEEEEECSSCEEE
T ss_pred             cccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCC--------------ccccccC--CCCceeeeeCCCCCeEEE
Confidence            36888999996  67777765   56677877654  21              0011111  11234668888886  45


Q ss_pred             EEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC----CeEEEEecCC
Q 023246           77 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIWKKKG  152 (285)
Q Consensus        77 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~vwd~~~  152 (285)
                      +++.++.+.+||+.++                +. ..+..+.    ..+++| +|+|+++++++.+    +.|++||+.+
T Consensus       127 ~s~~~~~~~l~d~~~g----------------~~-~~l~~~~----~~~~~~-spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          127 TGATEDRVALYALDGG----------------GL-RELARLP----GFGFVS-DIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             EEECSSCEEEEEEETT----------------EE-EEEEEES----SCEEEE-EEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             EecCCCCceEEEccCC----------------cE-EEeecCC----CceEEE-CCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            5566666669999876                23 3333332    267776 9999999988776    7899999998


Q ss_pred             CceEEEEecccccceEeEEcCCCCeEEEEecCC--cEEEEcCCCCCCCCCCCCcccceeec-------cccCCCceEEEe
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TVKLWAPMPTDFPPLPDNAEKIMKAN-------KQGREDHSRITL  223 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  223 (285)
                      ++.. .+..|...+..++|+|||++|+++..++  .|++||+.++....+..+...+....       .+++++.+++++
T Consensus       185 g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  263 (582)
T 3o4h_A          185 GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVA  263 (582)
T ss_dssp             CCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred             CCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEE
Confidence            8765 6677888899999999999999888888  89999998877554444544443333       034555788899


Q ss_pred             CCCCeEEEEEe
Q 023246          224 TPDVIMHVLRL  234 (285)
Q Consensus       224 s~d~~i~vwd~  234 (285)
                      +.++.+++|++
T Consensus       264 ~~~g~~~l~~~  274 (582)
T 3o4h_A          264 RREGRSAVFID  274 (582)
T ss_dssp             EETTEEEEEET
T ss_pred             EcCCcEEEEEE
Confidence            99999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=4.2e-15  Score=121.88  Aligned_cols=226  Identities=12%  Similarity=0.065  Sum_probs=143.7

Q ss_pred             EEEcCCCCcEEEEeeC-CCc--EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            9 IVIDPRNPNYFAVGGS-DEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      .+|+||+ ..|+.++. ++.  |.+||+.+++.               ..+..++...+..+.|+|+|+.|+.. .++.|
T Consensus        41 ~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~---------------~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           41 KCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVA---------------TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL  104 (388)
T ss_dssp             CCBCTTS-CEEEEEECTTSSCEEEEEETTTCEE---------------EECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred             ccCCCCC-CEEEEEEcCCCCceEEEEeCCCCce---------------EEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence            6799987 66776666 674  77788887752               22224455555567899999988885 47899


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEE----------------------ecC
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS----------------------GSD  141 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~----------------------~~~  141 (285)
                      ++||+.++                +....+..+...  +....+ .++++++++.                      ...
T Consensus       105 ~~~d~~~g----------------~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A          105 MRVDLATL----------------EENVVYQVPAEW--VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             EEEETTTC----------------CEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             EEEECCCC----------------cceeeeechhhc--ccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence            99999887                444444444432  322221 2789988874                      234


Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcC-CCCeEEEEecC------CcEEEEcCCCCCCCCCCCCcc--cceeecc
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIE------KTVKLWAPMPTDFPPLPDNAE--KIMKANK  212 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~  212 (285)
                      +..|++||+.+++... +..+...+..++|+| +++.|+.+..+      ..|.++++.+.....+..+..  .+.... 
T Consensus       167 ~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-  244 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF-  244 (388)
T ss_dssp             CEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE-
T ss_pred             cceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce-
Confidence            5789999999886544 444667789999999 99998877653      378888887776655544432  233333 


Q ss_pred             ccCCCceEEE-eCCC----CeEEEEEecccccceeE---------------eeeccccccCCC---------CCcCeEEE
Q 023246          213 QGREDHSRIT-LTPD----VIMHVLRLQRRQTLAYR---------------ERRYNAADFESD---------EEEGETYL  263 (285)
Q Consensus       213 ~~~~~~~~~~-~s~d----~~i~vwd~~~~~~~~~~---------------~~~~~~~~~~~~---------~~~~~v~~  263 (285)
                      ++++++.++. ...+    ..|++||+.+++.....               .+++++..+...         .....+|+
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            3555554433 2222    24999999876532211               244555555432         33456888


Q ss_pred             eecCCCC
Q 023246          264 LGFSDSD  270 (285)
Q Consensus       264 ~~~~~~~  270 (285)
                      ++...+.
T Consensus       325 ~d~~~~~  331 (388)
T 3pe7_A          325 FNMKNGT  331 (388)
T ss_dssp             EETTTTE
T ss_pred             EeccCCc
Confidence            8876653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=3.6e-14  Score=113.96  Aligned_cols=232  Identities=12%  Similarity=0.114  Sum_probs=150.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCC------------------------CcEEEEEccCCcccCCcCCCCCcccccccccCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSD------------------------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG   58 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (285)
                      -+.+.+++++|++ +++++...+                        ++|.+||..+++..              .....
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~   87 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--------------QSSGK   87 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------EEECT
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------eccCC
Confidence            3578999999986 888888777                        47999998877632              12212


Q ss_pred             CCCcceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---------cccCceeeeeEEE
Q 023246           59 KNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---------GHRNSQTVKGVNF  128 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~  128 (285)
                      ++-..+..++++|+|+++++.. ++.|++|+.....               ..+..+.         .+..  ....+++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~---------------~~~~~~~~~~~~g~~~~~~~--~P~~ia~  150 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE---------------GPLLILGRSMQPGSDQNHFC--QPTDVAV  150 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS---------------CCSEEESBTTBCCCSTTCCS--SEEEEEE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe---------------EEEEEecccCCCCCCccccC--CCcEEEE
Confidence            4455788999999999888864 8999999986431               1333332         2222  2788997


Q ss_pred             ecC-CCcEEEEec-CCCeEEEEecCCCceEEEEecc----------cccceEeEEcCC-CCeEEEEecCCcEEEEcCCCC
Q 023246          129 FGP-NDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD----------RHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       129 ~~~-~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~h----------~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~  195 (285)
                       +| +++++++.+ .++.|++|+ .+++.+..+...          -..+..++++|+ +.++++...++.|++|++.++
T Consensus       151 -~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          151 -EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             -CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             -eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence             88 788888886 699999999 458777776432          234889999998 777777778899999999855


Q ss_pred             CC-CCC--CCCcccceeecccc-----CCCceEEEeCCCCeEEEEEecccccceeEeeec----cccccCCCCCcCeEEE
Q 023246          196 DF-PPL--PDNAEKIMKANKQG-----REDHSRITLTPDVIMHVLRLQRRQTLAYRERRY----NAADFESDEEEGETYL  263 (285)
Q Consensus       196 ~~-~~~--~~~~~~~~~~~~~~-----~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~  263 (285)
                      ++ ..+  ..+...+..+....     .++...++...+..+++|++.+++.+..+....    ....++.++ +|.+|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyv  307 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYI  307 (329)
T ss_dssp             CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEE
T ss_pred             cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEE
Confidence            43 222  22222333222211     012233334455689999988887666542111    122233333 346777


Q ss_pred             eecCCC
Q 023246          264 LGFSDS  269 (285)
Q Consensus       264 ~~~~~~  269 (285)
                      .+..++
T Consensus       308 ad~~~~  313 (329)
T 3fvz_A          308 GDAHTN  313 (329)
T ss_dssp             EESSSC
T ss_pred             EECCCC
Confidence            765544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=3.9e-14  Score=115.10  Aligned_cols=201  Identities=7%  Similarity=0.019  Sum_probs=123.0

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC----CcEEEEEccC--CcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD----EYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d----g~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ....++|+|++ .+|++++.+    +.|.+|++..  ++..            ..... ..+......+++  ++++|++
T Consensus        51 ~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~------------~~~~~-~~~~~~p~~~~~--dg~~l~~  114 (361)
T 3scy_A           51 NPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLH------------LLNTQ-KTMGADPCYLTT--NGKNIVT  114 (361)
T ss_dssp             CCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEE------------EEEEE-ECSSSCEEEEEE--CSSEEEE
T ss_pred             CCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEE------------EeeEe-ccCCCCcEEEEE--CCCEEEE
Confidence            45678999986 778887775    8999999875  3311            11111 223445677777  7776666


Q ss_pred             e--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee--cc------cCceeeeeEEEecCCCcEEEE-ecCCCeEEE
Q 023246           79 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH------RNSQTVKGVNFFGPNDEYVMS-GSDCGHLFI  147 (285)
Q Consensus        79 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~v  147 (285)
                      +  .++.|.+|++......          .  .....+.  +.      .....+.+++| +|+++++++ ...++.|.+
T Consensus       115 ~~~~~~~v~~~~~~~~g~~----------~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~-spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          115 ANYSGGSITVFPIGQDGAL----------L--PASDVIEFKGSGPDKERQTMPHLHCVRI-TPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EETTTTEEEEEEBCTTSCB----------C--SCSEEEECCCCCSCTTTCSSCCEEEEEE-CTTSSEEEEEETTTTEEEE
T ss_pred             EECCCCEEEEEEeCCCCcC----------c--ccceeEEccCCCCCccccCCCcceEEEE-CCCCCEEEEEeCCCCEEEE
Confidence            4  4899999999754100          0  0101111  00      00112577887 999996655 455899999


Q ss_pred             EecCCCc-------eE------EEEecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCC------CCCCCcccc
Q 023246          148 WKKKGGK-------LV------RLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP------PLPDNAEKI  207 (285)
Q Consensus       148 wd~~~~~-------~~------~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~------~~~~~~~~~  207 (285)
                      |++....       ..      .....+...+..++|+|+++++++++ .++.|.+|++..+.+.      ....+....
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            9877433       21      11223445678999999999877766 6899999998755421      111122222


Q ss_pred             eeeccccCCCceEE-EeCC-CCeEEEEEec
Q 023246          208 MKANKQGREDHSRI-TLTP-DVIMHVLRLQ  235 (285)
Q Consensus       208 ~~~~~~~~~~~~~~-~~s~-d~~i~vwd~~  235 (285)
                      ..+. ..+++++++ +... ++.|.+|++.
T Consensus       262 ~~i~-~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          262 GDIH-LSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEE-ECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             ccEE-ECCCCCEEEEECCCCCCEEEEEEEc
Confidence            2332 345566554 4444 5899999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.69  E-value=1.1e-14  Score=117.67  Aligned_cols=210  Identities=10%  Similarity=0.087  Sum_probs=127.1

Q ss_pred             cceeEEEEcCCCCcEEEEee-CCCcEEEEEccC-CcccC--CcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            4 IRLNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYS--PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      ..+..++|+|++ .+|++++ .++.|++|++.. +....  .......    .+.  ...+...+.+++|+|+|+++++.
T Consensus        86 ~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~----~p~--~~~~~~~~~~~~~spdg~l~v~~  158 (347)
T 3hfq_A           86 TPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH----GPR--PEQDGSHIHYTDLTPDNRLAVID  158 (347)
T ss_dssp             CCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC----CSS--TTCSSCCEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC----CCC--ccccCCCceEEEECCCCcEEEEe
Confidence            356789999986 6666666 789999999963 22110  0000000    000  01234468899999999966665


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCC--Cce
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKG--GKL  155 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~--~~~  155 (285)
                      . ++.|.+|++....             .......+..... .....++| +|+++++++ ...++.|.+|++..  ++.
T Consensus       159 ~~~~~v~~~~~~~~g-------------~~~~~~~~~~~~g-~~p~~~~~-spdg~~l~v~~~~~~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAG-------------QLSEQSVLTMEAG-FGPRHLVF-SPDGQYAFLAGELSSQIASLKYDTQTGAF  223 (347)
T ss_dssp             TTTTEEEEEEECTTS-------------CEEEEEEEECCTT-CCEEEEEE-CTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCCCEEEEEEECCCC-------------cEEEeeeEEcCCC-CCCceEEE-CCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence            4 8899999997320             0011112222221 12677897 999996655 56789999999874  443


Q ss_pred             --EEEEeccc------ccceEeEEcCCCCeE-EEEecCCcEEEEcCCCC-CC---CCCCCCcccceeeccccCCCceEEE
Q 023246          156 --VRLMVGDR------HVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPT-DF---PPLPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       156 --~~~~~~h~------~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                        +..+....      ..+..++|+|++++| ++...++.|.+|++... .+   ..+..+...+..+.+ .++++++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-spdg~~l~v  302 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL-DPTEAFVVV  302 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-CTTSSEEEE
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-CCCCCEEEE
Confidence              22333222      347889999999986 55567899999998632 21   222222223333333 445555554


Q ss_pred             e-CCCCeEEEEEecc
Q 023246          223 L-TPDVIMHVLRLQR  236 (285)
Q Consensus       223 ~-s~d~~i~vwd~~~  236 (285)
                      + ..++.+.+|++..
T Consensus       303 ~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          303 VNQNTDNATLYARDL  317 (347)
T ss_dssp             EETTTTEEEEEEECT
T ss_pred             EEcCCCcEEEEEEeC
Confidence            4 5569999997653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=6.2e-15  Score=120.13  Aligned_cols=199  Identities=9%  Similarity=0.048  Sum_probs=126.4

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEcc-CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE--EEEe--
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL--LISY--   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~--l~s~--   79 (285)
                      .+..++|+|++ .+|++++.+ .|.+|++. +++....            ... ..+ +.+..++|+|+|++  ++++  
T Consensus        41 ~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~------------~~~-~~~-g~~~~~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           41 PISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHE------------ASH-PIG-GHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEE------------EEE-ECC-SSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEe------------eEe-ecC-CCCccEEECCCCCEEEEEEecC
Confidence            57789999986 788888887 99999997 6653110            000 011 12445889999984  4443  


Q ss_pred             ------------cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec--ccCceeeeeEEEecCCCcEEEEec-CCCe
Q 023246           80 ------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HRNSQTVKGVNFFGPNDEYVMSGS-DCGH  144 (285)
Q Consensus        80 ------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~-~dg~  144 (285)
                                  .++.+.+|++....               +....+..  +.....+.+++| +|+|++++++. .++.
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~  168 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETG---------------KLEKNVQNYEYQENTGIHGMVF-DPTETYLYSADLTANK  168 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTC---------------CEEEEEEEEECCTTCCEEEEEE-CTTSSEEEEEETTTTE
T ss_pred             CcceeccceeecCCceEEEEccCCCC---------------cCcceEeeEEeCCCCcceEEEE-CCCCCEEEEEcCCCCE
Confidence                        47899999997420               22222221  111123888997 99999887765 4689


Q ss_pred             EEEEecC-CCceE--EEEe--cccccceEeEEcCCCCeEEEEec-CCcEEEEcCC--CCCC-------CCCCCC----cc
Q 023246          145 LFIWKKK-GGKLV--RLMV--GDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPM--PTDF-------PPLPDN----AE  205 (285)
Q Consensus       145 v~vwd~~-~~~~~--~~~~--~h~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~--~~~~-------~~~~~~----~~  205 (285)
                      |++|++. +++..  ..+.  .|...+..++|+|+++++++++. ++.|.+|++.  ++++       ..+...    ..
T Consensus       169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  248 (365)
T 1jof_A          169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP  248 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred             EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence            9999998 67653  3333  24567899999999999877764 6899999764  3432       122211    11


Q ss_pred             ------cceeeccccCCCceEEEeCCC-C-----eEEEEEec
Q 023246          206 ------KIMKANKQGREDHSRITLTPD-V-----IMHVLRLQ  235 (285)
Q Consensus       206 ------~~~~~~~~~~~~~~~~~~s~d-~-----~i~vwd~~  235 (285)
                            .+..+...+++++++++...+ .     .|.+|++.
T Consensus       249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence                  233333135566665554432 3     89999996

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.65  E-value=5.1e-14  Score=114.43  Aligned_cols=216  Identities=8%  Similarity=0.048  Sum_probs=122.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-CCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d~~   83 (285)
                      ...+++  ++..++++...++.|.+|++................. .-......+...+.+++|+|+|++++. +. ++.
T Consensus       102 p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  178 (361)
T 3scy_A          102 PCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG-SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ  178 (361)
T ss_dssp             EEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC-CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             cEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC-CCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence            445666  4533444444689999999975432211100000000 000001223445789999999996655 43 889


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCc---eEee-cccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCce--E
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS-GHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKL--V  156 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~--~  156 (285)
                      |.+|++.........     .  .....   .... ...  .....++| +|+++++++++ .++.|.+|++.+++.  +
T Consensus       179 v~v~~~~~~~~~~~~-----~--~l~~~~~~~~~~~~~~--~~~~~~~~-spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          179 IHKFNINPNANADNK-----E--KFLTKGTPEAFKVAPG--SGPRHLIF-NSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEEEECTTCCTTTC-----C--CCEEEEEEEEEECCTT--CCEEEEEE-CTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEEEEEcCCCCcccc-----c--ceeecccccceecCCC--CCCeEEEE-cCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            999998764100000     0  00000   1111 122  22678997 99999887666 689999999987754  2


Q ss_pred             EEEe---cccccceEeEEcCCCCeEEEEec--CCcEEEEcCC--CCCCC---CCCCCcccceeeccccCCCceEEEe-CC
Q 023246          157 RLMV---GDRHVVNQLEPHPHIPMFATCGI--EKTVKLWAPM--PTDFP---PLPDNAEKIMKANKQGREDHSRITL-TP  225 (285)
Q Consensus       157 ~~~~---~h~~~v~~~~~~p~~~~l~t~~~--d~~i~iwd~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-s~  225 (285)
                      ..+.   .+...+..++|+|++++|+++..  ++.|.+|++.  .+.+.   .+.. ...+..+.+ .+++++++++ ..
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~-spdg~~l~~~~~~  326 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII-TPNGKYLLVACRD  326 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE-CTTSCEEEEEETT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE-CCCCCEEEEEECC
Confidence            2232   23345679999999999866664  4899999985  33321   1221 122223333 4455555554 46


Q ss_pred             CCeEEEEEecc
Q 023246          226 DVIMHVLRLQR  236 (285)
Q Consensus       226 d~~i~vwd~~~  236 (285)
                      ++.+.+|++..
T Consensus       327 ~~~v~v~~~d~  337 (361)
T 3scy_A          327 TNVIQIFERDQ  337 (361)
T ss_dssp             TTEEEEEEECT
T ss_pred             CCCEEEEEEEC
Confidence            79999987753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=6.8e-15  Score=130.69  Aligned_cols=206  Identities=8%  Similarity=0.053  Sum_probs=127.3

Q ss_pred             eEEEEcCCCCcEEEEeeCC---------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            7 NAIVIDPRNPNYFAVGGSD---------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      ..++||||+ .+|+.++.+         +.+.+||+.+++..               .+ ..|...+..++|||||+.||
T Consensus        65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------------~l-~~~~~~~~~~~~SPdG~~la  127 (740)
T 4a5s_A           65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------------TE-ERIPNNTQWVTWSPVGHKLA  127 (740)
T ss_dssp             CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------------CS-SCCCTTEEEEEECSSTTCEE
T ss_pred             cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCcEE---------------Ec-ccCCCcceeeEECCCCCEEE
Confidence            348899986 788888776         56679999988632               11 45667899999999999999


Q ss_pred             EecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-------eeeeeEEEecCCCcEEEEecCC--------
Q 023246           78 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDEYVMSGSDC--------  142 (285)
Q Consensus        78 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~~~~~d--------  142 (285)
                      .+.++.|++|++.++...   .+..    .......+.++...       .....+.| +|+|++|+.++.|        
T Consensus       128 ~~~~~~i~~~~~~~~~~~---~lt~----~g~~~~~~~g~~~~v~~ee~~~~~~~~~w-SpDg~~la~~~~d~~~v~~~~  199 (740)
T 4a5s_A          128 YVWNNDIYVKIEPNLPSY---RITW----TGKEDIIYNGITDWVYEEEVFSAYSALWW-SPNGTFLAYAQFNDTEVPLIE  199 (740)
T ss_dssp             EEETTEEEEESSTTSCCE---ECCS----CCBTTTEEESBCCHHHHHHTSSSSBCEEE-CTTSSEEEEEEEECTTCCEEE
T ss_pred             EEECCeEEEEECCCCceE---EEcC----CCCccceecCcccccccchhcCCCcceEE-CCCCCEEEEEEEcccCCceEE
Confidence            988999999999876100   0000    00000111111100       00234765 9999999876422        


Q ss_pred             ----------------------------CeEEEEecCC---Cc--eEEEEe------cccccceEeEEcCCCCeEEEEec
Q 023246          143 ----------------------------GHLFIWKKKG---GK--LVRLMV------GDRHVVNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       143 ----------------------------g~v~vwd~~~---~~--~~~~~~------~h~~~v~~~~~~p~~~~l~t~~~  183 (285)
                                                  ..|++||+.+   ++  ....+.      +|...+..++|+|+++.++....
T Consensus       200 ~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~  279 (740)
T 4a5s_A          200 YSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR  279 (740)
T ss_dssp             EEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence                                        1588999988   73  233343      27778999999999997665532


Q ss_pred             ----CCcEEEEcCCCCC-------CCCC--CCCcccce-----eeccccCCCceEE-EeC-CC--CeEEEEEecccc
Q 023246          184 ----EKTVKLWAPMPTD-------FPPL--PDNAEKIM-----KANKQGREDHSRI-TLT-PD--VIMHVLRLQRRQ  238 (285)
Q Consensus       184 ----d~~i~iwd~~~~~-------~~~~--~~~~~~~~-----~~~~~~~~~~~~~-~~s-~d--~~i~vwd~~~~~  238 (285)
                          +..|++||+.++.       ...+  ..+...+.     ... ++++++.++ ..+ .+  ..|++||+..+.
T Consensus       280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~-fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH-FTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE-ECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce-EcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence                3379999997765       2222  22332221     222 244555444 444 33  467777776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=8.5e-14  Score=109.41  Aligned_cols=196  Identities=10%  Similarity=0.161  Sum_probs=132.1

Q ss_pred             ceeEEEEc-CCCCcEEEEeeC-CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            5 RLNAIVID-PRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         5 ~v~~~~~s-~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .+.+++++ ++ +.++++... ++.|++|| .+++..              ..+...+...+..++++++|+++++. .+
T Consensus        78 ~p~~i~~~~~~-g~l~v~~~~~~~~i~~~d-~~g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  141 (286)
T 1q7f_A           78 YPNRVAVVRNS-GDIIVTERSPTHQIQIYN-QYGQFV--------------RKFGATILQHPRGVTVDNKGRIIVVECKV  141 (286)
T ss_dssp             SEEEEEEETTT-TEEEEEECGGGCEEEEEC-TTSCEE--------------EEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred             CceEEEEEcCC-CeEEEEcCCCCCEEEEEC-CCCcEE--------------EEecCccCCCceEEEEeCCCCEEEEECCC
Confidence            56789994 65 366666643 89999999 445421              11112344568899999999988875 48


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|.+|+...                 +.+..+........+.++++ +++++++++...++.|++||.. ++.+..+..
T Consensus       142 ~~i~~~~~~g-----------------~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  202 (286)
T 1q7f_A          142 MRVIIFDQNG-----------------NVLHKFGCSKHLEFPNGVVV-NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG  202 (286)
T ss_dssp             TEEEEECTTS-----------------CEEEEEECTTTCSSEEEEEE-CSSSEEEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred             CEEEEEcCCC-----------------CEEEEeCCCCccCCcEEEEE-CCCCCEEEEECCCCEEEEEcCC-CCEEEEEcc
Confidence            8999999653                 24444432111123788997 9999988888889999999984 667766654


Q ss_pred             c--cccceEeEEcCCCCeEEEEecCC-cEEEEcCCCCCCCCCCCCcc--cceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          162 D--RHVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDFPPLPDNAE--KIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       162 h--~~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +  ...+..++++|+++++++...++ .|.+|+.....+..+..+..  .+..+.. .+++.++++ +.++.|++|++..
T Consensus       203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~-~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL-MDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE-ETTTEEEEE-ETTTEEEEEECSC
T ss_pred             CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE-CCCCcEEEE-CCCCeEEEEEccc
Confidence            3  35788999999999888887775 99999976554433322211  1222222 334456666 5689999998755


Q ss_pred             c
Q 023246          237 R  237 (285)
Q Consensus       237 ~  237 (285)
                      .
T Consensus       281 ~  281 (286)
T 1q7f_A          281 L  281 (286)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.63  E-value=3.1e-14  Score=116.01  Aligned_cols=200  Identities=11%  Similarity=0.058  Sum_probs=126.1

Q ss_pred             eeEEEEcCCCCc--EEEEee-------------CCCcEEEEEccC-CcccCCcCCCCCcccccccccCCCCCcceEEEEE
Q 023246            6 LNAIVIDPRNPN--YFAVGG-------------SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY   69 (285)
Q Consensus         6 v~~~~~s~~~~~--~l~tg~-------------~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~   69 (285)
                      ...++|+|++ .  +++++.             .++++.+|++.. ++....           .......+...+.+++|
T Consensus        85 ~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~-----------~~~~~~~~~~~~~~~~~  152 (365)
T 1jof_A           85 PRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKN-----------VQNYEYQENTGIHGMVF  152 (365)
T ss_dssp             GGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEE-----------EEEEECCTTCCEEEEEE
T ss_pred             CccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcce-----------EeeEEeCCCCcceEEEE
Confidence            4567899986 5  355553             689999999973 442100           00000124567899999


Q ss_pred             ecCCCEEEEe--cCCcEEEEEcC-CCCCCCCCCCCCccccCCCC--ceEeec--ccCceeeeeEEEecCCCcEEEEecC-
Q 023246           70 SNTSELLISY--NDELVYLFEKN-MGLGPSPLSLSPEDLQKREE--PQVYSG--HRNSQTVKGVNFFGPNDEYVMSGSD-  141 (285)
Q Consensus        70 s~~~~~l~s~--~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~-  141 (285)
                      +|+|++|+++  .++.|++|++. ++                +.  +..+..  +..  .+..++| +|+++++++++. 
T Consensus       153 spdG~~l~~~~~~~~~v~~~~~~~~g----------------~~~~~~~~~~~~~g~--~p~~~~~-spdg~~l~v~~~~  213 (365)
T 1jof_A          153 DPTETYLYSADLTANKLWTHRKLASG----------------EVELVGSVDAPDPGD--HPRWVAM-HPTGNYLYALMEA  213 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTS----------------CEEEEEEEECSSTTC--CEEEEEE-CTTSSEEEEEETT
T ss_pred             CCCCCEEEEEcCCCCEEEEEEECCCC----------------CEEEeeeEecCCCCC--CCCEeEE-CCCCCEEEEEECC
Confidence            9999977764  36899999997 44                22  122321  222  3788997 999998877664 


Q ss_pred             CCeEEEEecC--CCceEE---EEe-------cccc------cceEeE-EcCCCCeEEEEecC-C-----cEEEEcCC-CC
Q 023246          142 CGHLFIWKKK--GGKLVR---LMV-------GDRH------VVNQLE-PHPHIPMFATCGIE-K-----TVKLWAPM-PT  195 (285)
Q Consensus       142 dg~v~vwd~~--~~~~~~---~~~-------~h~~------~v~~~~-~~p~~~~l~t~~~d-~-----~i~iwd~~-~~  195 (285)
                      ++.|.+|++.  +++...   .+.       +|..      .+..++ |+|++++|++++.+ .     .|.+|++. .+
T Consensus       214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g  293 (365)
T 1jof_A          214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence            7899999765  565432   222       1122      478899 99999987766543 2     89999985 44


Q ss_pred             CCCC----CCCCcccceeeccccC---CCceEEEeCC-CCeEEEEEeccc
Q 023246          196 DFPP----LPDNAEKIMKANKQGR---EDHSRITLTP-DVIMHVLRLQRR  237 (285)
Q Consensus       196 ~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~s~-d~~i~vwd~~~~  237 (285)
                      ++..    ...+......+.. .+   +++++++++. ++.|.+|++...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~a~-sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          294 SIEKQLFLSPTPTSGGHSNAV-SPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEEEECSSCCTTCCCE-EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEeeeeeecCCCCccccee-cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            4321    1111111212211 23   4566766665 599999998776

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.63  E-value=6.5e-14  Score=122.88  Aligned_cols=155  Identities=10%  Similarity=0.007  Sum_probs=106.5

Q ss_pred             CCcceEEEEEecCCCEEEEec-C----------CcEEEEEcCC------CCCCCCCCCCCccccCCCCceEee-cccCce
Q 023246           60 NNIHITGLAYSNTSELLISYN-D----------ELVYLFEKNM------GLGPSPLSLSPEDLQKREEPQVYS-GHRNSQ  121 (285)
Q Consensus        60 h~~~v~~i~~s~~~~~l~s~~-d----------~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  121 (285)
                      |...+..++|+|+|+.|+.++ +          ..|++||+.+      +                 ....+. .+..  
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~l~~~~~~--  188 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS-----------------AVRELSDDAHR--  188 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG-----------------GSEESSCSCSS--
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC-----------------ceeEEEecCCC--
Confidence            677889999999999887753 4          5899999987      4                 223333 3333  


Q ss_pred             eeeeEEEecCCCcEEEEecCC--------CeEEEEecC-CC---ceEEEEecccccceEeEEcCCCCeEEEEecCC--cE
Q 023246          122 TVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKK-GG---KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK--TV  187 (285)
Q Consensus       122 ~i~~~~~~~~~~~~l~~~~~d--------g~v~vwd~~-~~---~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~--~i  187 (285)
                      .+..++| +|+|++|+.++.+        ..|++||+. ++   +.......|...+..++|+|++++++++..++  .|
T Consensus       189 ~~~~~~~-SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l  267 (662)
T 3azo_A          189 FVTGPRL-SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNL  267 (662)
T ss_dssp             EECCCEE-CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEE
T ss_pred             cccCceE-CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEE
Confidence            3778886 9999999877744        489999998 56   44444445578899999999999888888888  66


Q ss_pred             EEEcCCCCCCCCCCCCcccceee--------ccccCCCceEEEeCCCCeEEEEEec
Q 023246          188 KLWAPMPTDFPPLPDNAEKIMKA--------NKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .+|++.++....+..+.......        .....+++++++++. +.+++|.+.
T Consensus       268 ~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          268 HRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             EEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             EEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            67777666543333222222111        111235667778887 999999554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.62  E-value=4.5e-13  Score=105.26  Aligned_cols=199  Identities=8%  Similarity=0.151  Sum_probs=136.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe-cCCCEEEEe-c-C
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISY-N-D   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~s~-~-d   81 (285)
                      ...+++++|++ +++++...++.|.+||.. ++....         +.......+|...+..+++. ++++++++. . +
T Consensus        31 ~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~---------~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~   99 (286)
T 1q7f_A           31 EPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQ---------FGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT   99 (286)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEE---------ECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             CCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEE---------ecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence            56789999986 788888889999999987 432111         11111112455678999995 777777775 3 8


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe-
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-  160 (285)
                      +.|.+|+.. +                +.+..+.... ...+.++++ +++++++++...++.|++||.. ++.+..+. 
T Consensus       100 ~~i~~~d~~-g----------------~~~~~~~~~~-~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  159 (286)
T 1q7f_A          100 HQIQIYNQY-G----------------QFVRKFGATI-LQHPRGVTV-DNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC  159 (286)
T ss_dssp             CEEEEECTT-S----------------CEEEEECTTT-CSCEEEEEE-CTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             CEEEEECCC-C----------------cEEEEecCcc-CCCceEEEE-eCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC
Confidence            899999943 3                3444443221 123788997 9999988888888999999965 66666664 


Q ss_pred             -cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCC--cccceeeccccCCCceEEEeCCCC-eEEEEEec
Q 023246          161 -GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN--AEKIMKANKQGREDHSRITLTPDV-IMHVLRLQ  235 (285)
Q Consensus       161 -~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~d~-~i~vwd~~  235 (285)
                       .+...+..++++|+++++++...++.|++|+.....+..+...  ...+..+. ...++.++++...++ .|.+|+..
T Consensus       160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEE-ECCCCCEEEEeCCCCEEEEEECCC
Confidence             3445689999999999888878889999999866544333222  12222222 233456777777775 99999954

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.60  E-value=4.1e-14  Score=115.95  Aligned_cols=197  Identities=9%  Similarity=0.038  Sum_probs=123.6

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEE--EecCCCEEEEe----
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA--YSNTSELLISY----   79 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~--~s~~~~~l~s~----   79 (285)
                      +..++|+|++ ..|+.++.++.|++||+.+++...               +...+...+....  ++|++++++..    
T Consensus        83 ~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~---------------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~  146 (388)
T 3pe7_A           83 TFGGFLSPDD-DALFYVKDGRNLMRVDLATLEENV---------------VYQVPAEWVGYGTWVANSDCTKLVGIEIRR  146 (388)
T ss_dssp             SSSCEECTTS-SEEEEEETTTEEEEEETTTCCEEE---------------EEECCTTEEEEEEEEECTTSSEEEEEEEEG
T ss_pred             ccceEEcCCC-CEEEEEeCCCeEEEEECCCCccee---------------eeechhhcccccceeECCCCCeeccccccC
Confidence            3467899986 889999989999999999886311               1122333343333  48899887741    


Q ss_pred             -------------------cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEe
Q 023246           80 -------------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSG  139 (285)
Q Consensus        80 -------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~  139 (285)
                                         .+..|.+||+.++                 ....+..+...  +..+.| +| +++.|+..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-----------------~~~~l~~~~~~--~~~~~~-sp~dg~~l~~~  206 (388)
T 3pe7_A          147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-----------------ESTVILQENQW--LGHPIY-RPYDDSTVAFC  206 (388)
T ss_dssp             GGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-----------------CEEEEEEESSC--EEEEEE-ETTEEEEEEEE
T ss_pred             cccccccccchhhhhhccCCcceEEEEECCCC-----------------ceEEeecCCcc--ccccEE-CCCCCCEEEEE
Confidence                               2467999999876                 33444444443  788886 99 99988776


Q ss_pred             cCC------CeEEEEecCCCceEEEEeccc--ccceEeEEcCCCCeEEEEec-CC----cEEEEcCCCCCCCCC---CCC
Q 023246          140 SDC------GHLFIWKKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGI-EK----TVKLWAPMPTDFPPL---PDN  203 (285)
Q Consensus       140 ~~d------g~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~t~~~-d~----~i~iwd~~~~~~~~~---~~~  203 (285)
                      ..+      ..|.++|+..++. ..+..+.  ..+..++|+|+|+.|+..+. ++    .|.+||+.+++...+   ..+
T Consensus       207 ~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~  285 (388)
T 3pe7_A          207 HEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC  285 (388)
T ss_dssp             ECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred             EecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence            653      3788888875544 3444343  35778899999998765543 22    399999988764322   210


Q ss_pred             cccc--eeeccccCCCceEEE-e--------CCCCeEEEEEeccccc
Q 023246          204 AEKI--MKANKQGREDHSRIT-L--------TPDVIMHVLRLQRRQT  239 (285)
Q Consensus       204 ~~~~--~~~~~~~~~~~~~~~-~--------s~d~~i~vwd~~~~~~  239 (285)
                      ....  .....++++++.++. .        ..+..|++||+.+++.
T Consensus       286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            0000  000012333433332 2        4567999999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=2.3e-13  Score=106.28  Aligned_cols=190  Identities=7%  Similarity=0.003  Sum_probs=137.1

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCC-cceEEEEEecCCCEEEEecCCcEEEEEcCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLISYNDELVYLFEKNMGLGP   95 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~   95 (285)
                      ++|++++.++.|.+||..+++.+..              + ..+. ..+.++.++|+|++++ +.++.|..||. ++   
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~--------------~-~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G---   65 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWE--------------Y-PLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DG---   65 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEE--------------E-ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TS---
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEE--------------e-CCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CC---
Confidence            7999999999999999988984322              1 1222 3577899999999888 45778999998 56   


Q ss_pred             CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC-CCeEEEEecCCCceEEEEec------ccccceE
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG------DRHVVNQ  168 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~------h~~~v~~  168 (285)
                                   +.+..+..+.. ..+.++.+ .++++.+++.+. .+.|..+|. +++.+..+..      +......
T Consensus        66 -------------~~~W~~~~~~~-~~~~~~~~-~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~  129 (276)
T 3no2_A           66 -------------RELWNIAAPAG-CEMQTARI-LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ  129 (276)
T ss_dssp             -------------CEEEEEECCTT-CEEEEEEE-CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC
T ss_pred             -------------CEEEEEcCCCC-ccccccEE-CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC
Confidence                         57777765421 23778886 899999999877 888888886 6888777652      2234566


Q ss_pred             eEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          169 LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       169 ~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +++.++++++++...++.|..||.+...+.++.... ..... ....++..+++...++.|..+|..+++.+-.+.
T Consensus       130 v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~-~~~~~-~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          130 INKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG-TPFSS-AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSS-CCCEE-EECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             ceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCC-Cccce-eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            788999999999999999999999843333333221 12222 123455677878878889999988776665553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=6.6e-13  Score=103.26  Aligned_cols=197  Identities=8%  Similarity=-0.031  Sum_probs=129.1

Q ss_pred             ceeEEEEcCCCCcEEE-EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            5 RLNAIVIDPRNPNYFA-VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      ...+++++|++ ++++ +...++.|.+|+..+....               .....+...+.+++++++|+++++..++.
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~   88 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT---------------VLPFNGLYQPQGLAVDGAGTVYVTDFNNR   88 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----E---------------ECCCCSCCSCCCEEECTTCCEEEEETTTE
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccc---------------eEeeCCcCCcceeEECCCCCEEEEcCCCE
Confidence            56789999976 6777 5577899999997654311               01012234577899999999777755889


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  163 (285)
                      |.+||....                 ....+.... ...+.++++ +++++++++...++.|.+|+..+...........
T Consensus        89 i~~~d~~~~-----------------~~~~~~~~~-~~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B           89 VVTLAAGSN-----------------NQTVLPFDG-LNYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             EEEECTTCS-----------------CCEECCCCS-CSSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             EEEEeCCCc-----------------eEeeeecCC-cCCCcceEE-CCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence            999998654                 222222111 122788997 8999988887788999999876554443323333


Q ss_pred             ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC-CCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ..+..++++|+++++++...++.|.+|+..+...... ......+..+.. ..++.++++...++.|.+|+....
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~-d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAV-DEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEE-CTTCCEEEEETTTSCEEEECTTCS
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEE-CCCCCEEEEECCCCcEEEEcCCCC
Confidence            4688999999998877777788999999877653221 111122222222 334457777777889999987654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.58  E-value=3.2e-13  Score=109.46  Aligned_cols=183  Identities=8%  Similarity=0.017  Sum_probs=126.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      +..+++.+++++.. .++++|+.+ .+++|++...+.... .....   +..... ..+.. |+.++|  ++.+|+.+.+
T Consensus        36 ~~~~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~-~~~~~---~~~~~~-~~lp~-V~~l~f--d~~~L~v~~~  105 (388)
T 1xip_A           36 PFASLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHIT-SDSTP---LTFKWE-KEIPD-VIFVCF--HGDQVLVSTR  105 (388)
T ss_dssp             CSSCCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHH-SSSCC---CCCSEE-EECTT-EEEEEE--ETTEEEEEES
T ss_pred             CcccccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhc-ccccc---ccceEE-eeCCC-eeEEEE--CCCEEEEEcC
Confidence            45679999999975 788888887 556699865431000 00000   111111 23455 999999  8888888899


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++||+.+.                ........+...  +.++.++.|+   +++++.||.|.+||+.+++...    
T Consensus       106 ~~l~v~dv~sl----------------~~~~~~~~~~~~--v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~----  160 (388)
T 1xip_A          106 NALYSLDLEEL----------------SEFRTVTSFEKP--VFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ----  160 (388)
T ss_dssp             SEEEEEESSST----------------TCEEEEEECSSC--EEEEEECSSE---EEEEETTSEEEEEETTTCCEEE----
T ss_pred             CcEEEEEchhh----------------hccCccceeecc--eeeEEecCCC---EEEEECCCCEEEEEccCCcccc----
Confidence            99999999876                333445555544  7787764332   8888999999999999887653    


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC---CCC------C---CCcccceeeccccCCCceEEE
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PPL------P---DNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~~------~---~~~~~~~~~~~~~~~~~~~~~  222 (285)
                      +...|++++|+|+|  ++.+..||++++|++....+   ..+      .   ++...+..+.|.. +..++++
T Consensus       161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~  230 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAV  230 (388)
T ss_dssp             EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEE
T ss_pred             ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEE
Confidence            34689999999999  67788999999998876652   222      1   2456677776654 4444444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.57  E-value=2.5e-13  Score=119.21  Aligned_cols=200  Identities=11%  Similarity=0.116  Sum_probs=128.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCC----------CcEEEEEccC------CcccCCcCCCCCcccccccccCCCCCcceEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSD----------EYARVYDIRK------CHWYSPISSDTPVDTFCPRHLIGKNNIHITGL   67 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i   67 (285)
                      ..+.+++|+||+ ..|++++.+          ..|++||+.+      ++               ...+...+...+..+
T Consensus       130 ~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~  193 (662)
T 3azo_A          130 LRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---------------VRELSDDAHRFVTGP  193 (662)
T ss_dssp             EEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---------------SEESSCSCSSEECCC
T ss_pred             ccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---------------eeEEEecCCCcccCc
Confidence            467889999986 788877766          5899999987      43               122210344577889


Q ss_pred             EEecCCCEEEEe-cC--------CcEEEEEcCC-CCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEE
Q 023246           68 AYSNTSELLISY-ND--------ELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        68 ~~s~~~~~l~s~-~d--------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      +|||||++|+.. .+        ..|++||+.. +.              ......+. .+...  +..+.| +|+|+++
T Consensus       194 ~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--------------~~~~~~l~~~~~~~--~~~~~~-spdg~l~  256 (662)
T 3azo_A          194 RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR--------------FADTRTLLGGPEEA--IAQAEW-APDGSLI  256 (662)
T ss_dssp             EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC--------------EEEEEEEEEETTBC--EEEEEE-CTTSCEE
T ss_pred             eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc--------------ccccEEeCCCCCce--EcceEE-CCCCeEE
Confidence            999999988764 33        3799999973 30              00223333 33433  888986 9999988


Q ss_pred             EEecCCC--eEEEEecCCCceEEEEeccccc--------ceEeEEcCCCCeEEEEecCCcEEEE--cCCCCCCCCCCCCc
Q 023246          137 MSGSDCG--HLFIWKKKGGKLVRLMVGDRHV--------VNQLEPHPHIPMFATCGIEKTVKLW--APMPTDFPPLPDNA  204 (285)
Q Consensus       137 ~~~~~dg--~v~vwd~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~l~t~~~d~~i~iw--d~~~~~~~~~~~~~  204 (285)
                      +++..++  .|++||+.+++.......+...        +..++|+|++++++++.. +.+++|  |+.++.+..+..+.
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~  335 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPW  335 (662)
T ss_dssp             EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSC
T ss_pred             EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCC
Confidence            8888888  7777787777655433333222        567889999999999988 999999  66666555555554


Q ss_pred             ccceeeccccCCCce-EEEeCCCC--eEEEEEecccc
Q 023246          205 EKIMKANKQGREDHS-RITLTPDV--IMHVLRLQRRQ  238 (285)
Q Consensus       205 ~~~~~~~~~~~~~~~-~~~~s~d~--~i~vwd~~~~~  238 (285)
                      ..+... +......+ +++.+.+.  .|+++|+.+++
T Consensus       336 ~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          336 TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            443322 11222333 34445554  45555554544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=3.1e-12  Score=102.69  Aligned_cols=226  Identities=8%  Similarity=0.056  Sum_probs=139.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C--
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D--   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d--   81 (285)
                      .+.+++|+|++ .+++++..++.|.+||..+++..              . +...+...+.+++++++|+++++.. +  
T Consensus        46 ~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~--------------~-~~~~~~~~~~~i~~~~dg~l~v~~~~~~~  109 (333)
T 2dg1_A           46 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK--------------R-PFVSHKANPAAIKIHKDGRLFVCYLGDFK  109 (333)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--------------E-EEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             cccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEE--------------E-EeeCCCCCcceEEECCCCcEEEEeCCCCC
Confidence            45789999976 78888888999999999877521              1 1113456799999999999888764 4  


Q ss_pred             --CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------CCeEEEEecCCC
Q 023246           82 --ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGG  153 (285)
Q Consensus        82 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~  153 (285)
                        +.|.+||..+.                .....+........+..+.+ +++++++++...      .+.|+.+|..++
T Consensus       110 ~~~~i~~~d~~~~----------------~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~  172 (333)
T 2dg1_A          110 STGGIFAATENGD----------------NLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSPDFR  172 (333)
T ss_dssp             SCCEEEEECTTSC----------------SCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             CCceEEEEeCCCC----------------EEEEEEccCccCCcccceEE-CCCCCEEEEeccccccCCCceEEEEeCCCC
Confidence              58999998765                22222221111123888997 999988887654      367777887655


Q ss_pred             ceEEEEecccccceEeEEcCCCCeE-EEEecCCcEEEEcCCC-CC-CCC--------CCCCcccceeeccccCCCceEEE
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMP-TD-FPP--------LPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~-~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                      +... +..+...+..++|+|+++.+ ++...++.|.+|+++. +. +..        +.++ ..+..+ ....++.++++
T Consensus       173 ~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i-~~d~~G~l~v~  249 (333)
T 2dg1_A          173 TVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC-CIDSDDNLYVA  249 (333)
T ss_dssp             CEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE-EEBTTCCEEEE
T ss_pred             EEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce-EECCCCCEEEE
Confidence            5443 33334567899999999865 4555678999999853 22 211        1111 111111 12334556666


Q ss_pred             eCCCCeEEEEEecccccceeEeeec-------cccccCCCCCcCeEEEeecC
Q 023246          223 LTPDVIMHVLRLQRRQTLAYRERRY-------NAADFESDEEEGETYLLGFS  267 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~  267 (285)
                      ...++.|.+||.. ++.+..+....       ....+...++.+.+|+....
T Consensus       250 ~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          250 MYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            6677899999874 43333332211       12233333444467765443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.55  E-value=8.4e-13  Score=105.96  Aligned_cols=206  Identities=11%  Similarity=0.060  Sum_probs=134.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCc-ccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEe--c
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY--N   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~--~   80 (285)
                      ....++++|++ +++++...++.|++|+..... .+..+...      ........+......++++| ++.++++.  .
T Consensus        92 ~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~------~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~  164 (329)
T 3fvz_A           92 LPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRS------MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC  164 (329)
T ss_dssp             SEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBT------TBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred             CceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEeccc------CCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence            46789999976 788888889999999986432 11111000      00000123455789999999 78888885  4


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC--------ceeeeeEEEecCC-CcEEEEecCCCeEEEEecC
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--------SQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~  151 (285)
                      ++.|++|+.. +                ..+..+.....        ......+++ +++ ++++++...++.|++|+..
T Consensus       165 ~~~I~~~~~~-g----------------~~~~~~~~~g~~~~~~~~~~~~p~gia~-d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          165 NSRIVQFSPS-G----------------KFVTQWGEESSGSSPRPGQFSVPHSLAL-VPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             CCEEEEECTT-S----------------CEEEEECEECCSSSCCTTEESCEEEEEE-ETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEcCC-C----------------CEEEEeccCCCCCCCCCcccCCCcEEEE-ECCCCEEEEEECCCCEEEEEECC
Confidence            8999999954 3                24444431110        012678997 888 7888888889999999999


Q ss_pred             CCceEEEEe--cccccceEeEEcCCCCeEEEE-------ecCCcEEEEcCCCCCCCC-C---CCCcccceeeccccCCCc
Q 023246          152 GGKLVRLMV--GDRHVVNQLEPHPHIPMFATC-------GIEKTVKLWAPMPTDFPP-L---PDNAEKIMKANKQGREDH  218 (285)
Q Consensus       152 ~~~~~~~~~--~h~~~v~~~~~~p~~~~l~t~-------~~d~~i~iwd~~~~~~~~-~---~~~~~~~~~~~~~~~~~~  218 (285)
                      +++.+..+.  .+...+..++++| +..+++.       ..+..|++|++..+++.. +   ..+......+.. .+++.
T Consensus       227 ~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~-~~dG~  304 (329)
T 3fvz_A          227 TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA-SEDGT  304 (329)
T ss_dssp             TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE-CTTSE
T ss_pred             CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE-CCCCC
Confidence            899988884  3556788999999 3333333       334589999987776422 2   122222333322 33446


Q ss_pred             eEEEeCCCCeEEEEEeccc
Q 023246          219 SRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~  237 (285)
                      ++++...++.|++|++...
T Consensus       305 lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          305 VYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEESSSCCEEEEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCcc
Confidence            7777777888888887653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=2.2e-12  Score=100.27  Aligned_cols=198  Identities=9%  Similarity=0.011  Sum_probs=132.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .+.++++++++ +++++.. ++.|.+||.......               .........+..++++++|+++++. .++.
T Consensus        68 ~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~---------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~  130 (270)
T 1rwi_B           68 QPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQT---------------VLPFDGLNYPEGLAVDTQGAVYVADRGNNR  130 (270)
T ss_dssp             SCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCE---------------ECCCCSCSSEEEEEECTTCCEEEEEGGGTE
T ss_pred             CcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEe---------------eeecCCcCCCcceEECCCCCEEEEECCCCE
Confidence            56789999975 6666655 889999998754311               1111223468899999999977775 4788


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  163 (285)
                      |.+|+..+.                ..........  ..+.++++ +++++++++...++.|.+||............+.
T Consensus       131 i~~~~~~~~----------------~~~~~~~~~~--~~p~~i~~-~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (270)
T 1rwi_B          131 VVKLAAGSK----------------TQTVLPFTGL--NDPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI  191 (270)
T ss_dssp             EEEECTTCC----------------SCEECCCCSC--CSCCCEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             EEEEECCCc----------------eeEeeccccC--CCceeEEE-eCCCCEEEEECCCCEEEEEecCCCceEeecccCC
Confidence            999975443                1111111111  12678887 8999988887778999999988666544333333


Q ss_pred             ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       164 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ..+..+++++++..+++...++.|.+|++.+....... .+...+..+.. ..++.++++...++.|+++++...+.
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~-~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV-DSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE-CTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE-CCCCCEEEEECCCCEEEEEcCCCccc
Confidence            67889999999977777777889999999765543222 11122223322 33445777778888888888776654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=1.9e-12  Score=102.16  Aligned_cols=198  Identities=12%  Similarity=0.042  Sum_probs=128.2

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i   84 (285)
                      ..+++|+|++..+++++..++.|..|+..++ ..          .+      ..+...+.+++++++|+++++.. ++.|
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~----------~~------~~~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS----------PE------MHPSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE----------EE------ESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE----------EE------ECCCCCcceeeECCCCcEEEEecCCCeE
Confidence            4679999986348889999999999998865 21          01      23456789999999999888865 6899


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccC--ceeeeeEEEecCCCcEEEE----ec-------------CCCeE
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKGVNFFGPNDEYVMS----GS-------------DCGHL  145 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~----~~-------------~dg~v  145 (285)
                      .+||..++                +..........  ...+..+++ +++|+++++    |+             ..+.|
T Consensus        93 ~~~d~~~g----------------~~~~~~~~~~~~~~~~~~~i~~-d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l  155 (296)
T 3e5z_A           93 ERQREPGG----------------EWESIADSFEGKKLNSPNDVCL-APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV  155 (296)
T ss_dssp             EEECSTTC----------------CEEEEECEETTEECCCCCCEEE-CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred             EEEcCCCC----------------cEEEEeeccCCCCCCCCCCEEE-CCCCCEEEECCccccccccccccccccCCCcEE
Confidence            99998765                22222111111  112677887 999998887    43             13567


Q ss_pred             EEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCC-CCCC----CCCCCCcccceeeccccCCCceE
Q 023246          146 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTDF----PPLPDNAEKIMKANKQGREDHSR  220 (285)
Q Consensus       146 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~  220 (285)
                      ..++.. ++. ..+..+...+..++|+|+++.+++.+.++.|.+|++. .+.+    ..+......+..+ ....++.++
T Consensus       156 ~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i-~~d~~G~l~  232 (296)
T 3e5z_A          156 FRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL-RVDAGGLIW  232 (296)
T ss_dssp             EEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE-EEBTTSCEE
T ss_pred             EEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE-EECCCCCEE
Confidence            777765 443 3445556678899999999988777778999999986 3332    1111111111111 122344455


Q ss_pred             EEeCCCCeEEEEEecccccceeE
Q 023246          221 ITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ++.  ++.|.+|+.. ++.+..+
T Consensus       233 v~~--~~~v~~~~~~-g~~~~~~  252 (296)
T 3e5z_A          233 ASA--GDGVHVLTPD-GDELGRV  252 (296)
T ss_dssp             EEE--TTEEEEECTT-SCEEEEE
T ss_pred             EEc--CCeEEEECCC-CCEEEEE
Confidence            554  8889999975 4444333

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=6.9e-14  Score=114.79  Aligned_cols=197  Identities=9%  Similarity=0.016  Sum_probs=121.6

Q ss_pred             eeEEEEcCCCCcEEEEee-CC--CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246            6 LNAIVIDPRNPNYFAVGG-SD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND   81 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~-~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d   81 (285)
                      +..++|+|++ .+|+... .+  ..|.+||+.+++..               .+..++......+.|+|+|+.|+. +.+
T Consensus        38 ~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~---------------~l~~~~~~~~~~~~~spdg~~l~~~~~~  101 (396)
T 3c5m_A           38 FYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAV---------------QLTEGKGDNTFGGFISTDERAFFYVKNE  101 (396)
T ss_dssp             TTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEE---------------ECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred             eecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEE---------------EeecCCCCccccceECCCCCEEEEEEcC
Confidence            6678999987 5655553 33  36788888876521               111222222234789999998877 457


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeee-------------------EEEecCCCcEEEEe---
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG-------------------VNFFGPNDEYVMSG---  139 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l~~~---  139 (285)
                      +.|++|++.++                +....+..+...  ...                   +. ++|+++.++..   
T Consensus       102 ~~l~~~d~~~~----------------~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~  162 (396)
T 3c5m_A          102 LNLMKVDLETL----------------EEQVIYTVDEEW--KGYGTWVANSDCTKLVGIEILKRD-WQPLTSWEKFAEFY  162 (396)
T ss_dssp             TEEEEEETTTC----------------CEEEEEECCTTE--EEEEEEEECTTSSEEEEEEEEGGG-CCCCCSHHHHHHHH
T ss_pred             CcEEEEECCCC----------------CcEEEEeccccc--CCCCCEEEeccCCccccccccccc-cCCCCcceeeeeec
Confidence            78999999876                233333322211  111                   23 37777766554   


Q ss_pred             --cCCCeEEEEecCCCceEEEEecccccceEeEEcC-CCCeEEEEecC------CcEEEEcCCCCCCCCCCCCc-c-cce
Q 023246          140 --SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HIPMFATCGIE------KTVKLWAPMPTDFPPLPDNA-E-KIM  208 (285)
Q Consensus       140 --~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d------~~i~iwd~~~~~~~~~~~~~-~-~~~  208 (285)
                        ..+..|++||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+|++.++....+..+. . .+.
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT  241 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred             cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence              45778999999988765544 4567789999999 78877666543      36888998776654443322 1 233


Q ss_pred             eeccccCCCceEEEeCCC-----CeEEEEEeccccc
Q 023246          209 KANKQGREDHSRITLTPD-----VIMHVLRLQRRQT  239 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~~~  239 (285)
                      ... +.++++.++..+.+     +.|++||+.+++.
T Consensus       242 ~~~-~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          242 HEF-WIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEE-ECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             ceE-ECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            333 34555555544332     4599999876643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=6.1e-13  Score=117.67  Aligned_cols=198  Identities=10%  Similarity=0.086  Sum_probs=126.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCC-----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDE-----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+.+++||||+ .+||.+..++     .|++||+.+++..              .....  ...+..++|+|||+.|+.+
T Consensus       126 ~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------~~~~~--~~~~~~~~wspDg~~l~~~  188 (710)
T 2xdw_A          126 ALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKEL--------------PDVLE--RVKFSCMAWTHDGKGMFYN  188 (710)
T ss_dssp             EEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEE--------------EEEEE--EECSCCEEECTTSSEEEEE
T ss_pred             EEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCC--------------ccccc--CcccceEEEEeCCCEEEEE
Confidence            47789999987 6777665433     8999999988632              11101  1125679999999977764


Q ss_pred             -cCCc----------------EEEEEcCCCCCCCCCCCCCccccCCCC--ceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246           80 -NDEL----------------VYLFEKNMGLGPSPLSLSPEDLQKREE--PQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        80 -~d~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                       .++.                |++|++.++                ..  ...+........+..+.| +|++++|+..+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~----------------~~~~~~v~~~~~~~~~~~~~~~-SpDg~~l~~~~  251 (710)
T 2xdw_A          189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTD----------------QSEDILCAEFPDEPKWMGGAEL-SDDGRYVLLSI  251 (710)
T ss_dssp             ECCCCSSCCSSSCCCCCCCCEEEEEETTSC----------------GGGCEEEECCTTCTTCEEEEEE-CTTSCEEEEEE
T ss_pred             EECCccccccccccccCCCCEEEEEECCCC----------------cccceEEeccCCCCeEEEEEEE-cCCCCEEEEEE
Confidence             4544                999999765                21  122333222223677886 99999988765


Q ss_pred             C-----CCeEEEEecCC------Cc-eEEEEecccccceEeEEcCCCCeEEEEecC----CcEEEEcCCCCC---CCCCC
Q 023246          141 D-----CGHLFIWKKKG------GK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTD---FPPLP  201 (285)
Q Consensus       141 ~-----dg~v~vwd~~~------~~-~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~---~~~~~  201 (285)
                      .     +..|++||+.+      ++ ....+..+...+.. .|+|++..|+..+.+    +.|.+|++.++.   ...+.
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            4     67899999986      43 35566666666654 588999887666543    369999987653   23333


Q ss_pred             CCcc--cceeeccccCCCceEEEeCCCCe--EEEEEecccc
Q 023246          202 DNAE--KIMKANKQGREDHSRITLTPDVI--MHVLRLQRRQ  238 (285)
Q Consensus       202 ~~~~--~~~~~~~~~~~~~~~~~~s~d~~--i~vwd~~~~~  238 (285)
                      .+..  .+....+ ...+.++++...++.  |++|++.+++
T Consensus       331 ~~~~~~~~~~~~~-~~~~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          331 PEHEKDVLEWVAC-VRSNFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             CCCSSCEEEEEEE-ETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCCCCeEEEEEE-EcCCEEEEEEEECCEEEEEEEECCCCC
Confidence            3333  2222322 335567788888875  5556654444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=5.2e-13  Score=107.19  Aligned_cols=197  Identities=12%  Similarity=0.132  Sum_probs=130.2

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      |....|++++|+|+. ..++..+.++.++.|.   ++              ....+ ..+...+.+++|++++++++++ 
T Consensus         3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~--------------~~~~~-~~~~~~~~~~~~~~~g~l~~~~~   63 (333)
T 2dg1_A            3 MSQQDLPTLFYSGKS-NSAVPIISESELQTIT---AE--------------PWLEI-SKKGLQLEGLNFDRQGQLFLLDV   63 (333)
T ss_dssp             ---CCCCBCCSCGGG-GCSSCCCCGGGSCEEE---CE--------------EEEEE-ESSCCCEEEEEECTTSCEEEEET
T ss_pred             ccccccceeeecCCc-cceeEEeecccCcccc---cc--------------eeEEE-eccCccccCcEECCCCCEEEEEC
Confidence            556789999999964 6666667888999993   22              11111 3445567899999999987776 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC----CeEEEEecCCCce
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----GHLFIWKKKGGKL  155 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~v~vwd~~~~~~  155 (285)
                      .++.|.+||..++                +.......+...  +.++++ +++++++++...+    +.|.+||..+++.
T Consensus        64 ~~~~i~~~d~~~~----------------~~~~~~~~~~~~--~~~i~~-~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           64 FEGNIFKINPETK----------------EIKRPFVSHKAN--PAAIKI-HKDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             TTCEEEEECTTTC----------------CEEEEEECSSSS--EEEEEE-CTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CCCEEEEEeCCCC----------------cEEEEeeCCCCC--cceEEE-CCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            4889999998766                333323233333  899997 9999988887766    7899999987776


Q ss_pred             EEEEe--cccccceEeEEcCCCCeEEEEec------CCcEEEEcCCCCCCCCCCCCcccceeeccccCCCc-eEEEeCCC
Q 023246          156 VRLMV--GDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDH-SRITLTPD  226 (285)
Q Consensus       156 ~~~~~--~h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~d  226 (285)
                      ...+.  .+...+..++++|+++++++...      .+.|..++..++++..+.........+.+ .++++ ++++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~~dg~~l~v~~~~~  203 (333)
T 2dg1_A          125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL-STDEKVLWVTETTA  203 (333)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE-CTTSSEEEEEEGGG
T ss_pred             EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEE-CCCCCEEEEEeCCC
Confidence            54443  23457899999999988776653      35566677665544332211112222222 33444 55666778


Q ss_pred             CeEEEEEecc
Q 023246          227 VIMHVLRLQR  236 (285)
Q Consensus       227 ~~i~vwd~~~  236 (285)
                      +.|++|++..
T Consensus       204 ~~i~~~d~~~  213 (333)
T 2dg1_A          204 NRLHRIALED  213 (333)
T ss_dssp             TEEEEEEECT
T ss_pred             CeEEEEEecC
Confidence            8999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=1.1e-12  Score=105.72  Aligned_cols=181  Identities=12%  Similarity=0.145  Sum_probs=114.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC---Cc--EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD---EY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d---g~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+..++|+|++ ..||..+.+   +.  |.+|++.+++..               .+ ..+.. +..++|+|+|+.|+..
T Consensus        60 ~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~---------------~l-~~~~~-~~~~~wspdg~~l~~~  121 (347)
T 2gop_A           60 NATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSK---------------KI-LEAKN-IRSLEWNEDSRKLLIV  121 (347)
T ss_dssp             SCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEE---------------EE-EEESE-EEEEEECTTSSEEEEE
T ss_pred             cCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceE---------------EE-EcCCC-ccceeECCCCCEEEEE
Confidence            46779999986 677766543   33  777787766421               11 11223 8899999999977764


Q ss_pred             c-C---------------------------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC
Q 023246           80 N-D---------------------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  131 (285)
Q Consensus        80 ~-d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  131 (285)
                      . +                           ..|++||+.++                +.+..+.. . .  +..+.| +|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----------------~~~~~l~~-~-~--~~~~~~-sp  180 (347)
T 2gop_A          122 GFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE----------------EVIEEFEK-P-R--FSSGIW-HR  180 (347)
T ss_dssp             EECCCC---------CCCC---------CEEEEEEEETTTT----------------EEEEEEEE-E-T--TCEEEE-ET
T ss_pred             EccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC----------------eEEeeecC-C-C--cccccC-CC
Confidence            3 2                           56889998776                33244443 2 3  778886 99


Q ss_pred             CCcEEEEecCC---------CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC--------CcEEEEcCCC
Q 023246          132 NDEYVMSGSDC---------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMP  194 (285)
Q Consensus       132 ~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~  194 (285)
                      ++ +++++..+         ..|+++|  +++ ...+..+ ..+..+  +|+|++|+.++.+        ..|.+||  +
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~  251 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G  251 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred             Ce-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C
Confidence            99 77776543         2455555  454 3444444 445444  9999998877744        3688888  4


Q ss_pred             CCCCCC-CCCccccee-eccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          195 TDFPPL-PDNAEKIMK-ANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       195 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +....+ ..+...+.. ..+ . ++ ++++++.++.+++| +.++
T Consensus       252 ~~~~~l~~~~~~~~~~~~~~-s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          252 KEVMGILDEVDRGVGQAKIK-D-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             SCEEESSTTCCSEEEEEEEE-T-TE-EEEEEEETTEEEEE-EESS
T ss_pred             CceEeccccCCcccCCccEE-c-Cc-EEEEEecCCcEEEE-EcCC
Confidence            443333 233334433 333 3 44 78888999999999 8743

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.51  E-value=2.3e-13  Score=111.63  Aligned_cols=192  Identities=8%  Similarity=-0.022  Sum_probs=119.8

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEE-------------------EE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG-------------------LA   68 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------i~   68 (285)
                      .+.|+|++ ..|+.++.++.|.+||+.+++.....               ..+......                   +.
T Consensus        85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~~~---------------~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  148 (396)
T 3c5m_A           85 GGFISTDE-RAFFYVKNELNLMKVDLETLEEQVIY---------------TVDEEWKGYGTWVANSDCTKLVGIEILKRD  148 (396)
T ss_dssp             TCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE---------------ECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred             cceECCCC-CEEEEEEcCCcEEEEECCCCCcEEEE---------------ecccccCCCCCEEEeccCCccccccccccc
Confidence            37899986 88888888889999999877532111               111111111                   35


Q ss_pred             EecCCCEEEE------ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecC
Q 023246           69 YSNTSELLIS------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSD  141 (285)
Q Consensus        69 ~s~~~~~l~s------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~  141 (285)
                      |+|+++.++.      ..+..|++||+.++                +. ..+..+...  +..+.| +| +++.++..+.
T Consensus       149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g----------------~~-~~~~~~~~~--~~~~~~-sp~dg~~l~~~~~  208 (396)
T 3c5m_A          149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETG----------------EL-EVIHQDTAW--LGHPIY-RPFDDSTVGFCHE  208 (396)
T ss_dssp             CCCCCSHHHHHHHHHTCCCEEEEEEETTTC----------------CE-EEEEEESSC--EEEEEE-ETTEEEEEEEEEC
T ss_pred             cCCCCcceeeeeeccCCCcceEEEEECCCC----------------cE-EeeccCCcc--cccceE-CCCCCCEEEEEec
Confidence            6777775554      23668999999876                33 333334433  788886 88 7876666544


Q ss_pred             C------CeEEEEecCCCceEEEEecc--cccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCCCCCCCCCcccce
Q 023246          142 C------GHLFIWKKKGGKLVRLMVGD--RHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPPLPDNAEKIM  208 (285)
Q Consensus       142 d------g~v~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~  208 (285)
                      +      ..|.+||+..++... +..+  ...+..++|+|++++|+.++.+     +.|++||+.++....+..... . 
T Consensus       209 ~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~-  285 (396)
T 3c5m_A          209 GPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-C-  285 (396)
T ss_dssp             SCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-E-
T ss_pred             CCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-C-
Confidence            3      468899987655433 3323  2357889999999987777644     449999998776433211111 1 


Q ss_pred             eeccccC-CCceEEEeC----------------CCCeEEEEEeccccc
Q 023246          209 KANKQGR-EDHSRITLT----------------PDVIMHVLRLQRRQT  239 (285)
Q Consensus       209 ~~~~~~~-~~~~~~~~s----------------~d~~i~vwd~~~~~~  239 (285)
                      ...+ .+ ++++++..+                .+..|++||+.+++.
T Consensus       286 ~~~~-s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          286 SHLM-SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             EEEE-ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCCc-cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            1223 33 555555433                347899999877654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=5e-12  Score=99.78  Aligned_cols=198  Identities=12%  Similarity=0.090  Sum_probs=125.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe---
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY---   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~---   79 (285)
                      ...+.+++++|++ .++++...++.|.+||..+++.....           ..........+..++++|+|+++++.   
T Consensus        68 ~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~  135 (296)
T 3e5z_A           68 SHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIA-----------DSFEGKKLNSPNDVCLAPDGSLWFSDPTY  135 (296)
T ss_dssp             CSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEE-----------CEETTEECCCCCCEEECTTSCEEEEECSH
T ss_pred             CCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEe-----------eccCCCCCCCCCCEEECCCCCEEEECCcc
Confidence            3457899999976 78777777789999999777632110           00001112346789999999988862   


Q ss_pred             -c--------------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCe
Q 023246           80 -N--------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH  144 (285)
Q Consensus        80 -~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~  144 (285)
                       .              .+.|..++.. +                 ....+..+...  ...++| +|+++.+++.+.++.
T Consensus       136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----------------~~~~~~~~~~~--~~gi~~-s~dg~~lv~~~~~~~  194 (296)
T 3e5z_A          136 GIDKPEEGYGGEMELPGRWVFRLAPD-G-----------------TLSAPIRDRVK--PNGLAF-LPSGNLLVSDTGDNA  194 (296)
T ss_dssp             HHHCGGGSSCCCCCSSSCEEEEECTT-S-----------------CEEEEECCCSS--EEEEEE-CTTSCEEEEETTTTE
T ss_pred             ccccccccccccccCCCcEEEEECCC-C-----------------CEEEeecCCCC--CccEEE-CCCCCEEEEeCCCCe
Confidence             1              2345555543 2                 23334444333  678997 999998888888999


Q ss_pred             EEEEecC-CCce---EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceE
Q 023246          145 LFIWKKK-GGKL---VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR  220 (285)
Q Consensus       145 v~vwd~~-~~~~---~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (285)
                      |++|++. +++.   ...+..+...+..++++++|+++++.  ++.|.+|++.+..+..+..+.. +........+.+.+
T Consensus       195 i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L  271 (296)
T 3e5z_A          195 THRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTL  271 (296)
T ss_dssp             EEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEE
T ss_pred             EEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEE
Confidence            9999986 5554   23333345667889999999876666  7899999997554444433333 33333323444455


Q ss_pred             EEeCCCCeEEEEEeccc
Q 023246          221 ITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~  237 (285)
                      +.++.+ .+.-++..+.
T Consensus       272 ~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          272 YMTVST-EFWSIETNVR  287 (296)
T ss_dssp             EEEETT-EEEEEECSCC
T ss_pred             EEEcCC-eEEEEEcccc
Confidence            555554 3444444443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=3.6e-12  Score=112.44  Aligned_cols=196  Identities=9%  Similarity=0.064  Sum_probs=122.6

Q ss_pred             ceeEEEEcCCCCcEEE-----EeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFA-----VGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~-----tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+.+++||||+ .+||     .|+.+.+|++||+.+++...            ...+ ...  ....++|+|+|+.|+.+
T Consensus       122 ~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------~~~~-~~~--~~~~~~wspDg~~l~~~  185 (695)
T 2bkl_A          122 SLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK------------VDVI-EGG--KYATPKWTPDSKGFYYE  185 (695)
T ss_dssp             EEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS------------SCCB-SCC--TTCCCEECTTSSEEEEE
T ss_pred             EEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC------------Cccc-Ccc--cccceEEecCCCEEEEE
Confidence            57889999987 6766     34445689999999887320            0011 111  12578999999977774


Q ss_pred             -cCCc-------------EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC--
Q 023246           80 -NDEL-------------VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG--  143 (285)
Q Consensus        80 -~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--  143 (285)
                       .+..             |++|++.++.              .+....+........+..+.| +|+|++++..+.++  
T Consensus       186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~--------------~~~~lv~~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          186 WLPTDPSIKVDERPGYTTIRYHTLGTEP--------------SKDTVVHERTGDPTTFLQSDL-SRDGKYLFVYILRGWS  250 (695)
T ss_dssp             ECCCCTTSCGGGGGGGCEEEEEETTSCG--------------GGCEEEECCCCCTTCEEEEEE-CTTSCCEEEEEEETTT
T ss_pred             EecCCCCCccccCCCCCEEEEEECCCCc--------------hhceEEEecCCCCEEEEEEEE-CCCCCEEEEEEeCCCC
Confidence             4554             9999998761              001122332222123778886 99999998877665  


Q ss_pred             --eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe---cCCcEEEEcCCCCCC---CCCCCCc-c-cceeeccc
Q 023246          144 --HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDF---PPLPDNA-E-KIMKANKQ  213 (285)
Q Consensus       144 --~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~---~~~~~~~-~-~~~~~~~~  213 (285)
                        .|++|+..+++. ..+..+...+....+ |++.+++...   .++.|.+|++.++..   ..+..+. . .+....+ 
T Consensus       251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~-  327 (695)
T 2bkl_A          251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI-  327 (695)
T ss_dssp             EEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE-
T ss_pred             ceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE-
Confidence              788887765544 344555566666667 5566444433   257899999976542   3332222 2 2222222 


Q ss_pred             cCCCceEEEeCCCCeEEEEEec
Q 023246          214 GREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                       ..+.++++...|+..++|.+.
T Consensus       328 -~~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          328 -VGGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             -ETTEEEEEEEETTEEEEEEEE
T ss_pred             -ECCEEEEEEEECCEEEEEEEe
Confidence             255678888889988888766

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.47  E-value=2e-11  Score=97.86  Aligned_cols=205  Identities=4%  Similarity=-0.091  Sum_probs=135.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~--~d~   82 (285)
                      ....+++++++ .++++...++.|.+||..+++....+....          ..+.......+++ .+++++++.  .++
T Consensus        85 ~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~----------~~~~~~~p~~i~~-~~~~lyv~~~~~~~  152 (328)
T 3dsm_A           85 SPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPD----------MDMESGSTEQMVQ-YGKYVYVNCWSYQN  152 (328)
T ss_dssp             SEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTT----------CCTTTCBCCCEEE-ETTEEEEEECTTCC
T ss_pred             CCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCC----------ccccCCCcceEEE-ECCEEEEEcCCCCC
Confidence            45678998875 555555589999999999887432211110          0011123446666 455566664  388


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC----------CeEEEEecCC
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC----------GHLFIWKKKG  152 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----------g~v~vwd~~~  152 (285)
                      .|.++|..++                +....+.....   ...+.+ ++++++++++..+          +.|.++|..+
T Consensus       153 ~v~viD~~t~----------------~~~~~i~~g~~---p~~i~~-~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          153 RILKIDTETD----------------KVVDELTIGIQ---PTSLVM-DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             EEEEEETTTT----------------EEEEEEECSSC---BCCCEE-CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred             EEEEEECCCC----------------eEEEEEEcCCC---ccceEE-cCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence            9999999877                45555554332   567886 8999988877655          7999999999


Q ss_pred             CceEEEEecc-cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC---CCCCcccceeeccccCCCceEEEe----C
Q 023246          153 GKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---LPDNAEKIMKANKQGREDHSRITL----T  224 (285)
Q Consensus       153 ~~~~~~~~~h-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----s  224 (285)
                      ++....+... ...+..++++|+++.+..+..  .|.+||+.++++..   +.........+........++++.    .
T Consensus       213 ~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~  290 (328)
T 3dsm_A          213 FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ  290 (328)
T ss_dssp             TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred             CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence            9887776532 246899999999998877654  89999998776532   111112232332222345577776    6


Q ss_pred             CCCeEEEEEecccccceeEe
Q 023246          225 PDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       225 ~d~~i~vwd~~~~~~~~~~~  244 (285)
                      .++.|.+||.. ++.+..+.
T Consensus       291 ~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          291 QQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             SEEEEEEECTT-CCEEEEEE
T ss_pred             cCCEEEEECCC-CCEEEEEE
Confidence            78999999987 66665553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.42  E-value=7.5e-12  Score=110.45  Aligned_cols=161  Identities=10%  Similarity=0.020  Sum_probs=107.5

Q ss_pred             CCCCCcceEEEEEecCCCEEEE-----ec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec
Q 023246           57 IGKNNIHITGLAYSNTSELLIS-----YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  130 (285)
Q Consensus        57 ~~~h~~~v~~i~~s~~~~~l~s-----~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  130 (285)
                      ..+|...+..++|||||++|+.     |+ +.+|++||+.++                +.+.  ..+........++| +
T Consensus       116 a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg----------------~~~~--~~~~~~~~~~~~~w-s  176 (695)
T 2bkl_A          116 SKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG----------------EWSK--VDVIEGGKYATPKW-T  176 (695)
T ss_dssp             SSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC----------------CBCS--SCCBSCCTTCCCEE-C
T ss_pred             ccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC----------------CCcC--CcccCcccccceEE-e
Confidence            3567778999999999998873     22 468999999887                2220  01111100256775 9


Q ss_pred             CCCcEEEEecCCCe-------------EEEEecCCCc----eEEEEecccccceEeEEcCCCCeEEEEecCC----cEEE
Q 023246          131 PNDEYVMSGSDCGH-------------LFIWKKKGGK----LVRLMVGDRHVVNQLEPHPHIPMFATCGIEK----TVKL  189 (285)
Q Consensus       131 ~~~~~l~~~~~dg~-------------v~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~----~i~i  189 (285)
                      |+++.|+.++.+..             |++|++.+++    ++.....|...+..+.|+|+|++|+..+.++    .|.+
T Consensus       177 pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          177 PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence            99999998887765             9999998876    3333334556788999999999988877666    6777


Q ss_pred             EcCCCCCCCCCCCCcccceeeccccCCCceEEEeC---CCCeEEEEEecccc
Q 023246          190 WAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT---PDVIMHVLRLQRRQ  238 (285)
Q Consensus       190 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~i~vwd~~~~~  238 (285)
                      |+..++....+..+........+  +++.+++...   .++.|.+||+.++.
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~--~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          257 KRPGEKDFRLLVKGVGAKYEVHA--WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             ECTTCSSCEEEEECSSCCEEEEE--ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EcCCCCceEEeecCCCceEEEEe--cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            87655555444434433333333  3333444443   35899999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.41  E-value=3.4e-11  Score=96.51  Aligned_cols=220  Identities=7%  Similarity=-0.026  Sum_probs=139.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      ...+.+..  ..++++...++.|.+||..+++.+.              .+ . .......++++++++++++. .++.|
T Consensus        46 ~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~--------------~i-~-~~~~p~~i~~~~~g~lyv~~~~~~~v  107 (328)
T 3dsm_A           46 AQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVG--------------RI-T-GFTSPRYIHFLSDEKAYVTQIWDYRI  107 (328)
T ss_dssp             EEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEE--------------EE-E-CCSSEEEEEEEETTEEEEEEBSCSEE
T ss_pred             ceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEE--------------Ec-C-CCCCCcEEEEeCCCeEEEEECCCCeE
Confidence            45677754  3677777778999999999887322              11 1 23467899999999766665 58999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccC---ceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEEEEe
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~  160 (285)
                      .+||..+.                +....+.....   ......+++  .+++.+++.. .++.|.++|+.+++.+..+.
T Consensus       108 ~~iD~~t~----------------~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A          108 FIINPKTY----------------EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             EEEETTTT----------------EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCC----------------eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            99999876                44445543320   002556775  3455555544 48999999999999888776


Q ss_pred             cccccceEeEEcCCCCeEEEEecC----------CcEEEEcCCCCCCC-CCCCC-cccceeeccccCCCceEEEeCCCCe
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIE----------KTVKLWAPMPTDFP-PLPDN-AEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d----------~~i~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                      .. .....++++|++++++++..+          +.|.++|+.+.++. .+... ......+.. .++++.++....  .
T Consensus       170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~-~~d~~~lyv~~~--~  245 (328)
T 3dsm_A          170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL-NGTRDTLYWINN--D  245 (328)
T ss_dssp             CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE-CTTSCEEEEESS--S
T ss_pred             cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE-ecCCCEEEEEcc--E
Confidence            43 456789999999987777654          78999999877642 22111 112222322 333444444443  8


Q ss_pred             EEEEEeccccccee--Eee-eccccccCCCCCcCeEEEee
Q 023246          229 MHVLRLQRRQTLAY--RER-RYNAADFESDEEEGETYLLG  265 (285)
Q Consensus       229 i~vwd~~~~~~~~~--~~~-~~~~~~~~~~~~~~~v~~~~  265 (285)
                      |.+||..+.+....  +.. ......++.+++++.+|+.+
T Consensus       246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            99999877654321  111 11122344444566788776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.41  E-value=6.2e-12  Score=102.18  Aligned_cols=206  Identities=9%  Similarity=0.027  Sum_probs=115.7

Q ss_pred             EEEEcCCCCcEEEEee----------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            8 AIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .++|+|++ .+++++.          .+++|.+||+.+.+....+....       ..  ..+......++|+|+|++|+
T Consensus        54 ~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~-------~~--~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           54 HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP-------KR--VQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT-------TB--CCBCCCGGGEEECTTSSEEE
T ss_pred             ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc-------cc--cccCCCcceEEECCCCCEEE
Confidence            78999986 6777665          36789999998776432211000       00  11234566799999999887


Q ss_pred             Ee--c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceE-eecccC------------------ceeeeeEEE-------
Q 023246           78 SY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRN------------------SQTVKGVNF-------  128 (285)
Q Consensus        78 s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~i~~~~~-------  128 (285)
                      ++  . ++.|.+||+.+.                +.+.. +.....                  ...+..+.+       
T Consensus       124 v~n~~~~~~v~v~d~~~~----------------~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKG----------------DYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             EEEESSSEEEEEEETTTT----------------EEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             EECCCCCCeEEEEECCCC----------------cEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            75  3 689999999876                22222 111000                  000111110       


Q ss_pred             --------ec-----------CCCcEEEEecCCCeEEEEecCCCce--EEEEecc----------cccceEeEEcCCCCe
Q 023246          129 --------FG-----------PNDEYVMSGSDCGHLFIWKKKGGKL--VRLMVGD----------RHVVNQLEPHPHIPM  177 (285)
Q Consensus       129 --------~~-----------~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~h----------~~~v~~~~~~p~~~~  177 (285)
                              ++           +++..++..+.++.|+++|+.....  +..+...          ......++++|+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence                    01           1122333344456677777654332  1111100          011223789999888


Q ss_pred             EEEEec-----------CCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc--ccceeE
Q 023246          178 FATCGI-----------EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR--QTLAYR  243 (285)
Q Consensus       178 l~t~~~-----------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~--~~~~~~  243 (285)
                      +..+..           .+.|.+||+.+.+. .++..+.  ...+.. .++++++++.+. +.|.+||..+.  +.+..+
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~-spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI-DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE-ETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE-CCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            665543           34899999988764 4444333  333333 445567776666 99999999988  665443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.39  E-value=4.7e-10  Score=88.22  Aligned_cols=193  Identities=11%  Similarity=0.117  Sum_probs=129.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..+.++++++++ .++++...++.|.+||.. ++..             .... ..+...+.+++++++|.++++.. ++
T Consensus        15 ~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~-------------~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~   78 (299)
T 2z2n_A           15 TGPYGITVSDKG-KVWITQHKANMISCINLD-GKIT-------------EYPL-PTPDAKVMCLTISSDGEVWFTENAAN   78 (299)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEE-------------EEEC-SSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeE-------------EecC-CcccCceeeEEECCCCCEEEeCCCCC
Confidence            468899999975 777766668899999987 5421             0011 22345789999999999888765 78


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-Eec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~  161 (285)
                      .|..|+.. +                 ....+........+.++++ +++++++++...++.|.+||. +++.... ...
T Consensus        79 ~i~~~~~~-g-----------------~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~  138 (299)
T 2z2n_A           79 KIGRITKK-G-----------------IIKEYTLPNPDSAPYGITE-GPNGDIWFTEMNGNRIGRITD-DGKIREYELPN  138 (299)
T ss_dssp             EEEEECTT-S-----------------CEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             eEEEECCC-C-----------------cEEEEeCCCcCCCceeeEE-CCCCCEEEEecCCceEEEECC-CCCEEEecCCC
Confidence            89999875 2                 1222321111123788987 889988888878899999998 5654432 223


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC--CCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +...+..++++|+++.+++...++.|..|++ .+++..  .......+..+.. ..++.++++...++.|.+|+.
T Consensus       139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK-GNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE-CCCCCEEEEccCCceEEEECC
Confidence            4467899999999988777777789999998 554322  1212222222222 234456666666788999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.37  E-value=2.1e-10  Score=94.60  Aligned_cols=196  Identities=11%  Similarity=0.030  Sum_probs=121.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC-
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE-   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~-   82 (285)
                      ....++|+|++ +++++...++.|++||..+++...               +... ..... ++|+++++.|+.+. ++ 
T Consensus       132 ~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~---------------~~~~-~~~~~-ia~~~~g~~l~~~d~~~~  193 (409)
T 3hrp_A          132 YMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTT---------------VHPG-FKGGK-PAVTKDKQRVYSIGWEGT  193 (409)
T ss_dssp             CEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEE---------------EEET-CCBCB-CEECTTSSEEEEEBSSTT
T ss_pred             CceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEE---------------eecc-CCCCc-eeEecCCCcEEEEecCCC
Confidence            45689999975 788887788999999998775321               1011 11223 89999999776653 34 


Q ss_pred             -cEEEEEcCCCCCCCCCCCCCccccCCCCceEe---ec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           83 -LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY---SG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        83 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                       .|.+|+....                .....+   .. ..  ..+.++++ +|++..|+.+..++.|+.||..++....
T Consensus       194 ~~I~~~d~~~~----------------~~~~~~g~~~~~~~--~~p~~iav-~p~~g~lyv~d~~~~I~~~d~~~~~~~~  254 (409)
T 3hrp_A          194 HTVYVYMKASG----------------WAPTRIGQLGSTFS--GKIGAVAL-DETEEWLYFVDSNKNFGRFNVKTQEVTL  254 (409)
T ss_dssp             CEEEEEEGGGT----------------TCEEEEEECCTTSC--SCCCBCEE-CTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred             ceEEEEEcCCC----------------ceeEEeeeccchhc--CCcEEEEE-eCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence             7999988755                222232   11 22  23778887 8844445556778999999998776432


Q ss_pred             E----Eecccccc-e-EeEEcCC-CCeEEEEecCCcEEEEcCCCCCCCCCCCCc---------------ccceeeccccC
Q 023246          158 L----MVGDRHVV-N-QLEPHPH-IPMFATCGIEKTVKLWAPMPTDFPPLPDNA---------------EKIMKANKQGR  215 (285)
Q Consensus       158 ~----~~~h~~~v-~-~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~  215 (285)
                      .    ..++...- . .++|+|+ +.++++-...+.|+.|+..... ..+.++.               .....+. ..+
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia-~d~  332 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMT-VDE  332 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEE-ECT
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEE-EeC
Confidence            2    22222222 3 8999995 5556666678899999986531 1111110               0111111 123


Q ss_pred             CCceEEEeC-CCCeEEEEEeccccc
Q 023246          216 EDHSRITLT-PDVIMHVLRLQRRQT  239 (285)
Q Consensus       216 ~~~~~~~~s-~d~~i~vwd~~~~~~  239 (285)
                      ++.++++-+ .+..|+.|++..+..
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEE
Confidence            455777777 788999998766543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.36  E-value=5.4e-11  Score=105.73  Aligned_cols=195  Identities=12%  Similarity=0.107  Sum_probs=120.4

Q ss_pred             ceeEEEEcCCCCcEEEEeeCC-C----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVGGSD-E----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~d-g----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+.+++||||+ .+||.+..+ |    +|++||+.+++..              ...  .+...+..++|+|+ +.|+.+
T Consensus       164 ~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~--------------~~~--~~~~~~~~~~wspD-~~l~~~  225 (741)
T 1yr2_A          164 ALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPL--------------ADE--LKWVKFSGLAWLGN-DALLYS  225 (741)
T ss_dssp             EEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEE--------------EEE--EEEEESCCCEESTT-SEEEEE
T ss_pred             EEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCC--------------Ccc--CCCceeccEEEECC-CEEEEE
Confidence            57789999987 666665543 3    5999999988731              100  01112357899999 866664


Q ss_pred             -cCC--------------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC--
Q 023246           80 -NDE--------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC--  142 (285)
Q Consensus        80 -~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--  142 (285)
                       .++              .|++|++.++.              ......+........+..+.| +|+|++|+..+.+  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--------------~~~~lv~~~~~~~~~~~~~~~-SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQ--------------SADQPVFATPELPKRGHGASV-SSDGRWVVITSSEGT  290 (741)
T ss_dssp             ECCCC--------CCCCCEEEEEETTSCG--------------GGCEEEECCTTCTTCEEEEEE-CTTSCEEEEEEECTT
T ss_pred             EecCcccccccccCCCCCEEEEEECCCCc--------------hhCEEEeccCCCCeEEEEEEE-CCCCCEEEEEEEccC
Confidence             333              38899987651              001223333222123678886 9999988877654  


Q ss_pred             ---CeEEEEecCCC--ceEEEEecccccceEeEEcCCCCeEEEEecC----CcEEEEcCCCC--CCCCCCCCcccce-ee
Q 023246          143 ---GHLFIWKKKGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPT--DFPPLPDNAEKIM-KA  210 (285)
Q Consensus       143 ---g~v~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~--~~~~~~~~~~~~~-~~  210 (285)
                         ..|++||+.++  +....+..+...+.... +|++..|+..+.+    +.|.+|++.+.  ....+..+....+ ..
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~  369 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV  369 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence               38999999877  41445555555555553 4889988777653    45999998763  2222222222222 22


Q ss_pred             ccccCCCceEEEeCCCCeEEEEEec
Q 023246          211 NKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      .+  ..+.++++...++..++|.+.
T Consensus       370 ~~--~~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          370 GI--AGNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EE--EBTEEEEEEEETTEEEEEEEE
T ss_pred             EE--ECCEEEEEEEECCEEEEEEEe
Confidence            22  245677888889888887665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.35  E-value=1.6e-10  Score=102.31  Aligned_cols=203  Identities=6%  Similarity=-0.028  Sum_probs=128.0

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCc----------------EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEY----------------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA   68 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~----------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~   68 (285)
                      .+.+++|+||+ ..|+.++.++.                |++|++.+++....          ... ....|...+..+.
T Consensus       172 ~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------~v~-~~~~~~~~~~~~~  239 (710)
T 2xdw_A          172 KFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----------LCA-EFPDEPKWMGGAE  239 (710)
T ss_dssp             CSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE----------EEE-CCTTCTTCEEEEE
T ss_pred             ccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce----------EEe-ccCCCCeEEEEEE
Confidence            35679999986 77777777765                99999987652100          000 1123455678999


Q ss_pred             EecCCCEEEEe-c-----CCcEEEEEcCC------CCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE
Q 023246           69 YSNTSELLISY-N-----DELVYLFEKNM------GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV  136 (285)
Q Consensus        69 ~s~~~~~l~s~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  136 (285)
                      |+|+|++|+.. .     +..|++||+.+      +.               .....+..+...  +.. .| +++++.|
T Consensus       240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---------------~~~~~l~~~~~~--~~~-~~-s~dg~~l  300 (710)
T 2xdw_A          240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI---------------LKWVKLIDNFEG--EYD-YV-TNEGTVF  300 (710)
T ss_dssp             ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS---------------CCCEEEECSSSS--CEE-EE-EEETTEE
T ss_pred             EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc---------------cceEEeeCCCCc--EEE-EE-eccCCEE
Confidence            99999977763 2     46899999975      31               134556655543  333 33 6777776


Q ss_pred             EEecC----CCeEEEEecCCCc--eEEEEecccc--cceEeEEcCCCCeEEEEecCCc--EEEEcCCCCC-CCCCCCCcc
Q 023246          137 MSGSD----CGHLFIWKKKGGK--LVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKT--VKLWAPMPTD-FPPLPDNAE  205 (285)
Q Consensus       137 ~~~~~----dg~v~vwd~~~~~--~~~~~~~h~~--~v~~~~~~p~~~~l~t~~~d~~--i~iwd~~~~~-~~~~~~~~~  205 (285)
                      +..+.    .+.|.+||+.+++  ....+..|..  .+..++|++++.++++...|+.  |.+|++..+. +..+..+..
T Consensus       301 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~  380 (710)
T 2xdw_A          301 TFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG  380 (710)
T ss_dssp             EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS
T ss_pred             EEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCc
Confidence            65443    3469999998764  2344444543  6888999987778888888885  5667774544 344443433


Q ss_pred             cceeeccccCCCceEEEeC---CCCeEEEEEecccc
Q 023246          206 KIMKANKQGREDHSRITLT---PDVIMHVLRLQRRQ  238 (285)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~s---~d~~i~vwd~~~~~  238 (285)
                      .+..+........++++.+   ..+.++.||+.+++
T Consensus       381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3333333222233444433   34899999998765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=2.8e-10  Score=90.34  Aligned_cols=206  Identities=10%  Similarity=0.122  Sum_probs=128.5

Q ss_pred             ceeEEEEcCCCCcEEEE-------eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC-CCEE
Q 023246            5 RLNAIVIDPRNPNYFAV-------GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL   76 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~t-------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l   76 (285)
                      ...+++|++++ .++++       +..++.|.+||..+++...          +..... .++...+.+++++++ ++++
T Consensus        19 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~----------~~~~~~-~~~~~~~~~i~~~~~~g~l~   86 (314)
T 1pjx_A           19 GAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV----------ICKPEV-NGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             TCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEE----------EECCEE-TTEECCEEEEEECSSSSEEE
T ss_pred             CccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEE----------EEeccc-CCCCCCCceEEEecCCCcEE
Confidence            34689999875 77777       6778999999988775311          000000 124467899999999 8877


Q ss_pred             EEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceE-eecc--cCceeeeeEEEecCCCcEEEEecCC-----------
Q 023246           77 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGH--RNSQTVKGVNFFGPNDEYVMSGSDC-----------  142 (285)
Q Consensus        77 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d-----------  142 (285)
                      ++.....|.+||.. +                +.... ....  .....+.++++ ++++++.++...+           
T Consensus        87 v~~~~~~l~~~d~~-g----------------~~~~~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           87 VADMRLGLLVVQTD-G----------------TFEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EEETTTEEEEEETT-S----------------CEEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             EEECCCCEEEEeCC-C----------------CEEEEEeccCCCccccCCcCEEE-CCCCCEEEEecCcccccccccccc
Confidence            77665579999987 5                22111 1110  11123788987 8999888877655           


Q ss_pred             ----CeEEEEecCCCceEEEEecccccceEeEEc----CCCCeEE-EEecCCcEEEEcCC-CCCC------CCCCCCc-c
Q 023246          143 ----GHLFIWKKKGGKLVRLMVGDRHVVNQLEPH----PHIPMFA-TCGIEKTVKLWAPM-PTDF------PPLPDNA-E  205 (285)
Q Consensus       143 ----g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~----p~~~~l~-t~~~d~~i~iwd~~-~~~~------~~~~~~~-~  205 (285)
                          +.|..|+.. ++.... ..+......++|+    |+++.+. +...++.|.+|++. .+.+      ..+..+. .
T Consensus       149 ~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             cCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCC
Confidence                678888876 554433 2334556889999    9997654 44567899999975 3321      1222221 1


Q ss_pred             cceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          206 KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ....+. ...++.++++...++.|.+||..+++....+
T Consensus       227 ~p~~i~-~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~  263 (314)
T 1pjx_A          227 GADGMD-FDEDNNLLVANWGSSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             EEEEEE-EBTTCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred             CCCceE-ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE
Confidence            222221 2334556777667889999998755544433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.33  E-value=2.4e-09  Score=84.12  Aligned_cols=193  Identities=7%  Similarity=0.021  Sum_probs=128.4

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~   82 (285)
                      ..+.++++++++ .++++...++.|..|+.. ++.             ..... ......+..+++.+++.++++. .++
T Consensus        57 ~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~-------------~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~  120 (299)
T 2z2n_A           57 AKVMCLTISSDG-EVWFTENAANKIGRITKK-GII-------------KEYTL-PNPDSAPYGITEGPNGDIWFTEMNGN  120 (299)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE-------------EEEEC-SSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             CceeeEEECCCC-CEEEeCCCCCeEEEECCC-CcE-------------EEEeC-CCcCCCceeeEECCCCCEEEEecCCc
Confidence            457889999975 777777768889999875 321             00011 1234568899999999988876 478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-Eec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~  161 (285)
                      .|.+||. .+                 ....+........+..+++ +++++..++...++.|..||. +++.... +..
T Consensus       121 ~i~~~d~-~g-----------------~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  180 (299)
T 2z2n_A          121 RIGRITD-DG-----------------KIREYELPNKGSYPSFITL-GSDNALWFTENQNNAIGRITE-SGDITEFKIPT  180 (299)
T ss_dssp             EEEEECT-TC-----------------CEEEEECSSTTCCEEEEEE-CTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             eEEEECC-CC-----------------CEEEecCCCCCCCCceEEE-cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCC
Confidence            8999998 33                 2222221111123788887 899988888877899999999 6665543 233


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC--CCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +...+..++++++++.+++...++.|..|++ .+.+..+  ......+..+.. ..++.++++...++.|..||.
T Consensus       181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA-GAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEEET
T ss_pred             CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE-CCCCCEEEeccCCceEEEECC
Confidence            4456889999999987777666789999999 5443222  212222333322 334456666667889999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=9.4e-10  Score=86.82  Aligned_cols=224  Identities=9%  Similarity=0.026  Sum_probs=139.3

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEE
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL   86 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~i   86 (285)
                      .+..|+|+++.++++...++.|..||..+++..             .    ......+.+++++++|+++++. +..|.+
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------~----~~~~~~~~~i~~~~dG~l~v~~-~~~l~~   77 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-------------R----VTMDAPVSSVALRQSGGYVATI-GTKFCA   77 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-------------E----EECSSCEEEEEEBTTSSEEEEE-TTEEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-------------E----EeCCCceEEEEECCCCCEEEEE-CCeEEE
Confidence            468899976678888888999999999876521             0    1123578999999999966654 668999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecc---cCceeeeeEEEecCCCcEEEEecC-----------CCeEEEEecCC
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKG  152 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~  152 (285)
                      ||..++                 ....+...   .....+..+++ +++|+++++...           .+.|+.++.. 
T Consensus        78 ~d~~~g-----------------~~~~~~~~~~~~~~~~~~di~~-d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-  138 (297)
T 3g4e_A           78 LNWKEQ-----------------SAVVLATVDNDKKNNRFNDGKV-DPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-  138 (297)
T ss_dssp             EETTTT-----------------EEEEEEECCTTCSSEEEEEEEE-CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-
T ss_pred             EECCCC-----------------cEEEEEecCCCCCCCCCCCEEE-CCCCCEEEecCCcccccccccCCCcEEEEEECC-
Confidence            998765                 22222211   11233788987 999997775422           2455555543 


Q ss_pred             CceEEEEecccccceEeEEcCCCCeE-EEEecCCcEEEEcC--CCCCCC------CCCCCcccceeeccccCCCceEEEe
Q 023246          153 GKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAP--MPTDFP------PLPDNAEKIMKANKQGREDHSRITL  223 (285)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  223 (285)
                      ++... +..+....+.++|+|+++.| ++.+.++.|..|++  ..+.+.      .+.........+ ....++.+.++.
T Consensus       139 g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~-~~d~~G~lwva~  216 (297)
T 3g4e_A          139 HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM-CIDAEGKLWVAC  216 (297)
T ss_dssp             SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE-EEBTTSCEEEEE
T ss_pred             CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee-EECCCCCEEEEE
Confidence            44333 33344567889999999875 45556789999986  343321      111111111111 123345567777


Q ss_pred             CCCCeEEEEEecccccceeEeee-ccccccCCC-CCcCeEEEeecCCC
Q 023246          224 TPDVIMHVLRLQRRQTLAYRERR-YNAADFESD-EEEGETYLLGFSDS  269 (285)
Q Consensus       224 s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~  269 (285)
                      ...+.|..||..+++.+..+... .....+..+ ++...+|+.....+
T Consensus       217 ~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          217 YNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG  264 (297)
T ss_dssp             ETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred             cCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence            77788999998777666655433 233444444 45566888766554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=4e-10  Score=87.89  Aligned_cols=155  Identities=8%  Similarity=0.023  Sum_probs=113.5

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c-CC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-DE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~-d~   82 (285)
                      .+.+++++|++ ++++  +.++.|..||. +++.+..+.              ......+.++.+.++|+++++. . ++
T Consensus        38 ~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~--------------~~~~~~~~~~~~~~dG~~lv~~~~~~~   99 (276)
T 3no2_A           38 ECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIA--------------APAGCEMQTARILPDGNALVAWCGHPS   99 (276)
T ss_dssp             CCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEE--------------CCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred             CCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEc--------------CCCCccccccEECCCCCEEEEecCCCC
Confidence            57889999975 7887  45788999999 676432211              1223467889999999988884 4 67


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC----ceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN----SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                      .|..++.. +                +.+..+.....    ......+++ .++++++++...++.|..||.. |+.+.+
T Consensus       100 ~v~~vd~~-G----------------k~l~~~~~~~~~~~~~~~~~~v~~-~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A          100 TILEVNMK-G----------------EVLSKTEFETGIERPHAQFRQINK-NKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EEEEECTT-S----------------CEEEEEEECCSCSSGGGSCSCCEE-CTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             EEEEEeCC-C----------------CEEEEEeccCCCCcccccccCceE-CCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence            77777753 3                34444431110    011445665 8899999999999999999998 999998


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      +..+ ..+.++...++++.++++..++.|..+|+.++++
T Consensus       161 ~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          161 VKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             EECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             EECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            8764 4567788899999999888888999999986663

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.32  E-value=2.1e-09  Score=91.99  Aligned_cols=196  Identities=8%  Similarity=0.028  Sum_probs=127.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEcc--CCcccCCcCCCCCcccccccccCCCCCcceEEEEEe----cCCCEEEE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS----NTSELLIS   78 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s----~~~~~l~s   78 (285)
                      .+..+.|+|++ +++++++.|+.|.+||+.  +++.              ...+..  ......++|+    |+|+++++
T Consensus       198 ~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~--------------v~~i~~--G~~P~~ia~s~~~~pDGk~l~v  260 (567)
T 1qks_A          198 AVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTT--------------VAEIKI--GSEARSIETSKMEGWEDKYAIA  260 (567)
T ss_dssp             CEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCE--------------EEEEEC--CSEEEEEEECCSTTCTTTEEEE
T ss_pred             CccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcE--------------eEEEec--CCCCceeEEccccCCCCCEEEE
Confidence            45689999986 788888999999999995  5542              122211  2235789999    69998777


Q ss_pred             ec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC---------ceeeeeEEEecCCC-cEEEEecCCCeEE
Q 023246           79 YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---------SQTVKGVNFFGPND-EYVMSGSDCGHLF  146 (285)
Q Consensus        79 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~-~~l~~~~~dg~v~  146 (285)
                      ++  +++|.++|..+.                +.+..+.....         ...+..+.. ++++ .+++.....|.|.
T Consensus       261 ~n~~~~~v~ViD~~t~----------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~-s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          261 GAYWPPQYVIMDGETL----------------EPKKIQSTRGMTYDEQEYHPEPRVAAILA-SHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEETTEEEEEETTTC----------------CEEEEEECCEECTTTCCEESCCCEEEEEE-CSSSSEEEEEETTTTEEE
T ss_pred             EEccCCeEEEEECCCC----------------cEEEEEeccccccccccccCCCceEEEEE-cCCCCEEEEEecCCCeEE
Confidence            53  899999998776                55555542210         012566765 6654 4566677789999


Q ss_pred             EEecCCCceEEEEe-cccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCCC-CC-----CCcccceeeccccCC-C
Q 023246          147 IWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPP-LP-----DNAEKIMKANKQGRE-D  217 (285)
Q Consensus       147 vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~-~~-----~~~~~~~~~~~~~~~-~  217 (285)
                      ++|..+.+.+.... ........+.|+|+++++++++ .++.|.++|+.++++.. +.     .|......  +..++ .
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~--~~~p~~g  401 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--FVHPTFG  401 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE--EEETTTE
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee--eECCCCC
Confidence            99988765332221 2234567889999999966555 67899999998876421 11     12111111  12232 3


Q ss_pred             ceEEEeC-CCCeEEEEEecc
Q 023246          218 HSRITLT-PDVIMHVLRLQR  236 (285)
Q Consensus       218 ~~~~~~s-~d~~i~vwd~~~  236 (285)
                      ..+++.. .++.|.++|...
T Consensus       402 ~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          402 PVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEBSSSSEEEEEECCT
T ss_pred             cEEEeCCCCCCeEEEecCCC
Confidence            3444443 568999999887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.31  E-value=1.4e-09  Score=88.36  Aligned_cols=176  Identities=9%  Similarity=0.003  Sum_probs=114.5

Q ss_pred             CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-----------CCcEEEEEcCCC
Q 023246           24 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----------DELVYLFEKNMG   92 (285)
Q Consensus        24 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-----------d~~i~iwd~~~~   92 (285)
                      .|+.|.+||..+++..              ..+ ..+..+  .++|+|+|+++++++           ++.|.+||..+.
T Consensus        29 ~d~~v~v~D~~t~~~~--------------~~i-~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFL--------------GMV-PTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGCEEEEEETTTCCEE--------------EEE-ECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             ccCeEEEEECCCCeEE--------------EEe-cCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            4789999999888632              122 233344  899999999777642           567999999876


Q ss_pred             CCCCCCCCCCccccCCCCceEeeccc----CceeeeeEEEecCCCcEEEEecC--CCeEEEEecCCCceEEE-Eeccccc
Q 023246           93 LGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRL-MVGDRHV  165 (285)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~--dg~v~vwd~~~~~~~~~-~~~h~~~  165 (285)
                                      +.+..+....    .......+++ +|++++++++..  ++.|.+||+.+++.+.. +.. . .
T Consensus        92 ----------------~~~~~i~~~~~~~~~g~~p~~i~~-spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~  152 (361)
T 2oiz_A           92 ----------------TFEKEISLPPKRVQGLNYDGLFRQ-TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-G  152 (361)
T ss_dssp             ----------------CEEEEEEECTTBCCBCCCGGGEEE-CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-T
T ss_pred             ----------------cEEEEEEcCccccccCCCcceEEE-CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-C
Confidence                            5555554321    0112567887 999999988764  68999999999988877 543 2 2


Q ss_pred             ceEeEEcCCC-CeEEEEecCCcEEEEcCCC-CCCC-------CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          166 VNQLEPHPHI-PMFATCGIEKTVKLWAPMP-TDFP-------PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       166 v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ...+.+.|++ ..+++.+.||.+.+|+... +++.       .+.....++ ... ...+...++..+.++.++++|+..
T Consensus       153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA-PALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC-CEECSSEEEEEBTTSEEEEEECSS
T ss_pred             cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE-ecccCCEEEEEeCCCeEEEEEecC
Confidence            2335677776 4578888999999998754 3321       111111111 110 112233455566789999999865


Q ss_pred             c
Q 023246          237 R  237 (285)
Q Consensus       237 ~  237 (285)
                      .
T Consensus       231 ~  231 (361)
T 2oiz_A          231 D  231 (361)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.31  E-value=4e-11  Score=96.62  Aligned_cols=180  Identities=10%  Similarity=0.119  Sum_probs=112.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCC---------------------------CcEEEEEccCCcccCCcCCCCCcccccccccCC
Q 023246            6 LNAIVIDPRNPNYFAVGGSD---------------------------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG   58 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~d---------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (285)
                      +..++|+|++ ..|+.++.+                           ..|.+||+.+++..              ..+ .
T Consensus       106 ~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~--------------~~l-~  169 (347)
T 2gop_A          106 IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI--------------EEF-E  169 (347)
T ss_dssp             EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE--------------EEE-E
T ss_pred             ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE--------------eee-c
Confidence            7789999986 666666532                           56888998877520              111 1


Q ss_pred             CCCcceEEEEEecCCCEEEEec-C------C-cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec
Q 023246           59 KNNIHITGLAYSNTSELLISYN-D------E-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG  130 (285)
Q Consensus        59 ~h~~~v~~i~~s~~~~~l~s~~-d------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  130 (285)
                      . . .+..+.|+|+| +++++. +      . ...||.+.++                 ....+..+ ..  +..  + +
T Consensus       170 ~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-----------------~~~~l~~~-~~--~~~--~-s  223 (347)
T 2gop_A          170 K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-----------------KEEKMFEK-VS--FYA--V-D  223 (347)
T ss_dssp             E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-----------------EEEEEEEE-ES--EEE--E-E
T ss_pred             C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-----------------ceEEeccC-cc--eee--E-C
Confidence            1 2 57789999999 777653 2      2 3445544333                 33344333 22  333  3 7


Q ss_pred             CCCcEEEEecCC--------CeEEEEecCCCceEEEEecccccceE-eEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC
Q 023246          131 PNDEYVMSGSDC--------GHLFIWKKKGGKLVRLMVGDRHVVNQ-LEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP  201 (285)
Q Consensus       131 ~~~~~l~~~~~d--------g~v~vwd~~~~~~~~~~~~h~~~v~~-~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~  201 (285)
                      |+|++++.++.+        ..|++||  +++.......|...+.. +.|+ ++ .+++++.++.+++| +..+....+.
T Consensus       224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~  298 (347)
T 2gop_A          224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA  298 (347)
T ss_dssp             ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred             CCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence            899988776643        4788888  56655444556677886 8999 88 88899999999999 8744433333


Q ss_pred             CCcccceeeccccCCCceEEEeCCCCeE-EEEEec
Q 023246          202 DNAEKIMKANKQGREDHSRITLTPDVIM-HVLRLQ  235 (285)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~s~d~~i-~vwd~~  235 (285)
                      .+...+....+. +  .++++++.++.. .+|.+.
T Consensus       299 ~~~~~v~~~~~s-~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          299 KGRHWIMGFDVD-E--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CSSSEEEEEEES-S--SEEEEEECSSSCCEEEEES
T ss_pred             cCCCeEEeeeee-C--cEEEEEcCCCChHHheEeC
Confidence            333334344332 2  566666666554 677665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=1.7e-09  Score=86.48  Aligned_cols=222  Identities=9%  Similarity=-0.022  Sum_probs=133.1

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEE
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYL   86 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~i   86 (285)
                      .+..|+|+++.++++...++.|..||..+++..             .  .  .....+.+++|+++|+++++..++ |.+
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------~--~--~~~~~v~~i~~~~dg~l~v~~~~g-l~~  113 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-------------V--H--ALPFMGSALAKISDSKQLIASDDG-LFL  113 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------E--E--ECSSCEEEEEEEETTEEEEEETTE-EEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------E--E--ECCCcceEEEEeCCCeEEEEECCC-EEE
Confidence            578999986678888888899999999876521             0  0  113468999999999988876444 999


Q ss_pred             EEcCCCCCCCCCCCCCccccCCCCceEeecc---cCceeeeeEEEecCCCcEEEEecC------CCeEEEEecCCCceEE
Q 023246           87 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVR  157 (285)
Q Consensus        87 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~~~  157 (285)
                      ||..++                + ...+...   .....+..+.+ +++|+++++...      .+.|+.++  +++.. 
T Consensus       114 ~d~~~g----------------~-~~~~~~~~~~~~~~~~~~i~~-d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-  172 (326)
T 2ghs_A          114 RDTATG----------------V-LTLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-  172 (326)
T ss_dssp             EETTTC----------------C-EEEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-
T ss_pred             EECCCC----------------c-EEEEeeCCCCCCCCCCCCEEE-CCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-
Confidence            998765                2 2222211   11134788987 999987776542      35677777  45443 


Q ss_pred             EEecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCC--CC-CCC------CCCCCcccceeeccccCCCceEEEeCCCC
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPM--PT-DFP------PLPDNAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~--~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      .+..+......++|+|+++.++.+ ..++.|.+|++.  ++ .+.      .+.........+ ....++.++++...++
T Consensus       173 ~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi-~~d~~G~lwva~~~~~  251 (326)
T 2ghs_A          173 KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGS-VCDAEGHIWNARWGEG  251 (326)
T ss_dssp             EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEE-EECTTSCEEEEEETTT
T ss_pred             EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCee-EECCCCCEEEEEeCCC
Confidence            333334457789999999876444 457899999985  44 321      111111111111 1223444566655668


Q ss_pred             eEEEEEecccccceeEeeec-cccccCCC-CCcCeEEEeecCCC
Q 023246          228 IMHVLRLQRRQTLAYRERRY-NAADFESD-EEEGETYLLGFSDS  269 (285)
Q Consensus       228 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~  269 (285)
                      .|..|+. .++.+..+.... ....+..+ ++.+.+|+.....+
T Consensus       252 ~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          252 AVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            8999986 344433332211 12334433 44456777655543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=3.7e-09  Score=83.09  Aligned_cols=193  Identities=9%  Similarity=0.042  Sum_probs=127.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..+.++++++++ .++++...++.|.+||.. ++..             ...+ ..+...+..+++.+++.++++.. ++
T Consensus        20 ~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~-------------~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~   83 (300)
T 2qc5_A           20 SGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIK-------------EFEV-PTPDAKVMCLIVSSLGDIWFTENGAN   83 (300)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE-------------EEEC-SSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceE-------------EEEC-CCCCCcceeEEECCCCCEEEEecCCC
Confidence            367789999975 777777778999999987 5421             0011 22345788999999999877764 78


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-Eec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~  161 (285)
                      .|..||.. +                +. ..+........+.++++ +++++++++...++.|..+|.. ++.... +..
T Consensus        84 ~v~~~d~~-g----------------~~-~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~  143 (300)
T 2qc5_A           84 KIGKLSKK-G----------------GF-TEYPLPQPDSGPYGITE-GLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN  143 (300)
T ss_dssp             EEEEECTT-S----------------CE-EEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred             eEEEECCC-C----------------Ce-EEecCCCCCCCCccceE-CCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence            89999987 4                22 22322111123788987 8899988888778899999987 655432 233


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC--CCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ....+..++++++++.+++...++.|..++. .+....+  ......+..+.. ..++.++++....+.|.+++.
T Consensus       144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS-GNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE-CTTSSEEEEETTTTEEEEECT
T ss_pred             CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE-CCCCCEEEEccCCCEEEEEcC
Confidence            3467889999999997776666788999998 4332221  111122222222 234456666666778888886

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.28  E-value=9.3e-10  Score=94.24  Aligned_cols=190  Identities=8%  Similarity=0.001  Sum_probs=128.9

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcC--CCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKN--MGL   93 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~--~~~   93 (285)
                      .++++...+++|.++|..+++.+.              .+ . ....+..+.|+|+|+++.++ .++.|.+||+.  +. 
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~--------------~i-~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-  230 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKT--------------VL-D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-  230 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEE--------------EE-E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEE--------------EE-e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-
Confidence            567777789999999999887432              21 1 12246689999999987775 58999999995  44 


Q ss_pred             CCCCCCCCCccccCCCCceEeecccCceeeeeEEEec----CCCcEEEEecC-CCeEEEEecCCCceEEEEecc------
Q 023246           94 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG----PNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVGD------  162 (285)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~h------  162 (285)
                                     +.+..+.....   ...++| +    |+|+++++++. ++.|.++|..+.+.+..+...      
T Consensus       231 ---------------~~v~~i~~G~~---P~~ia~-s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~  291 (567)
T 1qks_A          231 ---------------TTVAEIKIGSE---ARSIET-SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE  291 (567)
T ss_dssp             ---------------CEEEEEECCSE---EEEEEE-CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred             ---------------cEeEEEecCCC---CceeEE-ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence                           45555554332   578887 8    69998877665 699999999999998876532      


Q ss_pred             -----cccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCC---CCCCCCcccceeeccccCCCceE-EEeCCCCeEEEE
Q 023246          163 -----RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF---PPLPDNAEKIMKANKQGREDHSR-ITLTPDVIMHVL  232 (285)
Q Consensus       163 -----~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~s~d~~i~vw  232 (285)
                           ...+..+..++++.. ++....+|.|.++|......   ..+. ......... +.++++++ ++...++.|.++
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~-~~pdgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGG-LDGSHRYFITAANARNKLVVI  369 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEE-ECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCce-ECCCCCEEEEEeCCCCeEEEE
Confidence                 125678888888766 55556779999999865431   1110 001111111 23445554 555668999999


Q ss_pred             EecccccceeEe
Q 023246          233 RLQRRQTLAYRE  244 (285)
Q Consensus       233 d~~~~~~~~~~~  244 (285)
                      |+.+++....+.
T Consensus       370 D~~t~kl~~~i~  381 (567)
T 1qks_A          370 DTKEGKLVAIED  381 (567)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCcEEEEEe
Confidence            999887665553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.28  E-value=1.6e-12  Score=105.92  Aligned_cols=188  Identities=9%  Similarity=0.013  Sum_probs=95.6

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP   95 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~   95 (285)
                      .++++++.||.|+.||..+++.......                 +.+.+..+..++..+++ +.|+.|+.||..++   
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG---   69 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-----------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN---   69 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC-----------------CCSCCCC-----CCEEECTTTCCEEEC--------
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC-----------------CCceecceEcCCCEEEEeCCCCEEEEEECCCC---
Confidence            6899999999999999999985432211                 12333334456766666 46999999999877   


Q ss_pred             CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCC
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI  175 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  175 (285)
                                   +.+..+..+... .+.+.-. -..+..+++++.++.|+.||..+|+.+..+..+.    ...++|++
T Consensus        70 -------------~~~w~~~~~~~~-~~~~sp~-~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~  130 (369)
T 2hz6_A           70 -------------EGLTKLPFTIPE-LVQASPC-RSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST  130 (369)
T ss_dssp             -------------CCSEECSCCHHH-HHTTCSC-C-----CCCCEEEEEEEEECCC------------------------
T ss_pred             -------------ceeeeeeccCcc-ccccCce-EecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC
Confidence                         444444322111 0111100 1135577888889999999999999988776543    23456788


Q ss_pred             CeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          176 PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       176 ~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ..+++++.|+.|+.||++++++ .++...................++.++.++.++.||..+++.+-..
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             CEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            8899999999999999988764 2221111000000000001146777889999999999888765433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=1.2e-10  Score=94.43  Aligned_cols=130  Identities=8%  Similarity=-0.008  Sum_probs=96.2

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY   85 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~   85 (285)
                      |+.++|  ++ .+|+++ .++.|++||+.+...              .... ..|..++.++.+.+.. +++...||.|.
T Consensus        90 V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~~--------------~~~~-~~~~~~v~~i~~~~p~-~av~~~dG~L~  149 (388)
T 1xip_A           90 VIFVCF--HG-DQVLVS-TRNALYSLDLEELSE--------------FRTV-TSFEKPVFQLKNVNNT-LVILNSVNDLS  149 (388)
T ss_dssp             EEEEEE--ET-TEEEEE-ESSEEEEEESSSTTC--------------EEEE-EECSSCEEEEEECSSE-EEEEETTSEEE
T ss_pred             eeEEEE--CC-CEEEEE-cCCcEEEEEchhhhc--------------cCcc-ceeecceeeEEecCCC-EEEEECCCCEE
Confidence            899999  55 788888 889999999986541              1111 3445567888777653 44446799999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce--EEEE----
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL--VRLM----  159 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~----  159 (285)
                      +||+..+                ... .   +...  |.+++| +|+|  ++.|..||.+++|+...++.  ..++    
T Consensus       150 v~dl~~~----------------~~~-~---~~~~--Vs~v~W-SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp  204 (388)
T 1xip_A          150 ALDLRTK----------------STK-Q---LAQN--VTSFDV-TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPS  204 (388)
T ss_dssp             EEETTTC----------------CEE-E---EEES--EEEEEE-CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCH
T ss_pred             EEEccCC----------------ccc-c---ccCC--ceEEEE-cCCc--eEEEEcCCcEEEEcCCCccccccceecCCc
Confidence            9999866                222 1   2323  999995 9999  67788899999999887665  5566    


Q ss_pred             --e---cccccceEeEEcCCCCeEEE
Q 023246          160 --V---GDRHVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       160 --~---~h~~~v~~~~~~p~~~~l~t  180 (285)
                        .   +|...|.++.|.+++.++++
T Consensus       205 ~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          205 ELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ccccccCCCeeEEEEEEecCCeEEEE
Confidence              2   36788999999999888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=3.2e-09  Score=84.14  Aligned_cols=199  Identities=11%  Similarity=0.040  Sum_probs=122.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCC-cCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d   81 (285)
                      ..+.++++++++++++++.. .+.|.+||.. ++.... ..           .........+.+++++++|+++++.. +
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~-----------~~~~~~~~~~~~i~~d~~g~l~v~~~~~  137 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKK-----------DSEGRRMQGCNDCAFDYEGNLWITAPAG  137 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSB-----------CTTSCBCBCCCEEEECTTSCEEEEECBC
T ss_pred             CCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEec-----------cCCCccccCCcCEEECCCCCEEEEecCc
Confidence            45788999997235555444 4478889987 653211 00           00011234578999999999877753 4


Q ss_pred             ---------------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec----CCCcEE-EEecC
Q 023246           82 ---------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG----PNDEYV-MSGSD  141 (285)
Q Consensus        82 ---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l-~~~~~  141 (285)
                                     +.|..|+.. +                +. ..+..+...  ...+++ +    ++++.+ ++...
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~-g----------------~~-~~~~~~~~~--~~~i~~-~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          138 EVAPADYTRSMQEKFGSIYCFTTD-G----------------QM-IQVDTAFQF--PNGIAV-RHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTT-S----------------CE-EEEEEEESS--EEEEEE-EECTTSCEEEEEEEETT
T ss_pred             ccccccccccccCCCCeEEEECCC-C----------------CE-EEeccCCCC--cceEEE-ecccCCCCCEEEEEECC
Confidence                           466666654 3                22 222222222  567886 8    888655 44567


Q ss_pred             CCeEEEEecC-CCce-----EEEEeccc-ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccc
Q 023246          142 CGHLFIWKKK-GGKL-----VRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ  213 (285)
Q Consensus       142 dg~v~vwd~~-~~~~-----~~~~~~h~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~  213 (285)
                      ++.|.+||+. +++.     ...+..+. ..+..++++++++++++...++.|..|++.+++. ..+..+...+..+.. 
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~-  275 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF-  275 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE-
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE-
Confidence            8999999986 4442     22333333 5678899999999888877788999999985443 333223233333433 


Q ss_pred             cCCCc-eEEEeCCCCeEEEEEeccc
Q 023246          214 GREDH-SRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       214 ~~~~~-~~~~~s~d~~i~vwd~~~~  237 (285)
                      ..++. ++++...++.|..|++...
T Consensus       276 ~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          276 KPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            34444 5566666788888887653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.24  E-value=4e-10  Score=100.18  Aligned_cols=157  Identities=8%  Similarity=-0.044  Sum_probs=99.2

Q ss_pred             CCCCcceEEEEEecCCCEEEEec--C----CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC
Q 023246           58 GKNNIHITGLAYSNTSELLISYN--D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP  131 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~~--d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  131 (285)
                      .+|...+..++|||||++|+.+.  +    .+|++||+.++                +.+.. ..+.  ..+..++| +|
T Consensus       159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg----------------~~~~~-~~~~--~~~~~~~w-sp  218 (741)
T 1yr2_A          159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG----------------KPLAD-ELKW--VKFSGLAW-LG  218 (741)
T ss_dssp             ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC----------------CEEEE-EEEE--EESCCCEE-ST
T ss_pred             cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC----------------CCCCc-cCCC--ceeccEEE-EC
Confidence            45556788999999999887743  2    36999999887                33221 1111  11356775 99


Q ss_pred             CCcEEEEecCCC--------------eEEEEecCCCce--EEEEe--cccccceEeEEcCCCCeEEEEecCC-----cEE
Q 023246          132 NDEYVMSGSDCG--------------HLFIWKKKGGKL--VRLMV--GDRHVVNQLEPHPHIPMFATCGIEK-----TVK  188 (285)
Q Consensus       132 ~~~~l~~~~~dg--------------~v~vwd~~~~~~--~~~~~--~h~~~v~~~~~~p~~~~l~t~~~d~-----~i~  188 (285)
                      + +.|+.++.++              .|++|++.+++.  ...+.  .+...+..+.|+|+|++|+..+.++     .|+
T Consensus       219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence            9 8887776554              389999977652  22233  2333578999999999988777544     899


Q ss_pred             EEcCCCC--C-CCCCCCCcccceeeccccCCCceEEEeCC----CCeEEEEEeccc
Q 023246          189 LWAPMPT--D-FPPLPDNAEKIMKANKQGREDHSRITLTP----DVIMHVLRLQRR  237 (285)
Q Consensus       189 iwd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----d~~i~vwd~~~~  237 (285)
                      +||+.++  . ...+..+........  .++++.++..+.    ++.|.+||+...
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDFV--DGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEEE--EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCCcccEEecCCCCceEEEE--eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            9999766  4 444443333333332  234444444443    466999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.24  E-value=9.7e-09  Score=80.65  Aligned_cols=193  Identities=5%  Similarity=0.041  Sum_probs=125.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..+.++++++++ .++++...++.|..||.. ++..              ..........+..+++.++++++++.. ++
T Consensus        62 ~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~~--------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  125 (300)
T 2qc5_A           62 AKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGFT--------------EYPLPQPDSGPYGITEGLNGDIWFTQLNGD  125 (300)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEE--------------EEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             CcceeEEECCCC-CEEEEecCCCeEEEECCC-CCeE--------------EecCCCCCCCCccceECCCCCEEEEccCCC
Confidence            457789999975 677776667889999987 5421              001122235688999999999887765 78


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEE-Eec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL-MVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~  161 (285)
                      .|..++.. +                +.. .+........+..+++ ++++++.++...++.|..+|. +++.... +..
T Consensus       126 ~i~~~~~~-g----------------~~~-~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  185 (300)
T 2qc5_A          126 RIGKLTAD-G----------------TIY-EYDLPNKGSYPAFITL-GSDNALWFTENQNNSIGRITN-TGKLEEYPLPT  185 (300)
T ss_dssp             EEEEECTT-S----------------CEE-EEECSSTTCCEEEEEE-CTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             eEEEECCC-C----------------CEE-EccCCCCCCCceeEEE-CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCC
Confidence            89999876 3                222 2221111123788887 899997777777889999998 5655432 223


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC--CCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +...+..+++++++...++....+.|..|+.. +....  +......+..+.. ..++.++++...++.|..++.
T Consensus       186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~-d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          186 NAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISEYDIPTPNARPHAITA-GKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEE-CSTTCEEEEETTTTEEEEECT
T ss_pred             CCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEEEECCCCCCCceEEEE-CCCCCEEEeccCCCeEEEECC
Confidence            44568899999999877766667789999983 33211  2112222222222 234456666666788888886

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=7.3e-09  Score=83.78  Aligned_cols=219  Identities=10%  Similarity=-0.036  Sum_probs=130.1

Q ss_pred             EEEcCCCCcEEEEeeC-----CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec---
Q 023246            9 IVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---   80 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---   80 (285)
                      ....|++ ..+++...     ++.|.+.|..+++.+.              .+..+ ..+ . ++++|+|+++..++   
T Consensus        38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~v~~--------------~I~vG-~~P-~-va~spDG~~lyVan~~~   99 (386)
T 3sjl_D           38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIG--------------MIDGG-FLP-N-PVVADDGSFIAHASTVF   99 (386)
T ss_dssp             CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEE--------------EEEEC-SSC-E-EEECTTSSCEEEEEEEE
T ss_pred             eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCeEEE--------------EEECC-CCC-c-EEECCCCCEEEEEcccc
Confidence            4456876 55555543     6899999999887432              22112 223 3 99999998665532   


Q ss_pred             --------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC-----ceeeeeEEEecCCCcEEEEecC--CCeE
Q 023246           81 --------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDEYVMSGSD--CGHL  145 (285)
Q Consensus        81 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~--dg~v  145 (285)
                              ++.|.+||..+.                +.+..+.....     ......+.+ +|+|++++.+..  ++.|
T Consensus       100 ~r~~~G~~~~~VsviD~~t~----------------~v~~~I~v~~g~r~~~g~~P~~~a~-spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D          100 SRIARGERTDYVEVFDPVTL----------------LPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EETTEEEEEEEEEEECTTTC----------------CEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSSSCEE
T ss_pred             cccccCCCCCEEEEEECCCC----------------eEEEEEECCCccccccCCCCceEEE-cCCCCEEEEEEcCCCCeE
Confidence                    578999999887                56666542210     012566887 999999888763  6899


Q ss_pred             EEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC-CCCC-----CCCCCccccee-eccccCCCc
Q 023246          146 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP-TDFP-----PLPDNAEKIMK-ANKQGREDH  218 (285)
Q Consensus       146 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~-~~~~-----~~~~~~~~~~~-~~~~~~~~~  218 (285)
                      .++|+.+++.+.++....  . ...+....+.+++.+.||.+.+.++.. +++.     .+......+.. ..+...+++
T Consensus       163 sVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~  239 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  239 (386)
T ss_dssp             EEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence            999999999998886422  1 122322344567777888888888754 4431     11101111111 111112333


Q ss_pred             eEEEeCCCCeEEEEEecccc--cceeEe----------eeccc-cccCCCCCcCeEEEeec
Q 023246          219 SRITLTPDVIMHVLRLQRRQ--TLAYRE----------RRYNA-ADFESDEEEGETYLLGF  266 (285)
Q Consensus       219 ~~~~~s~d~~i~vwd~~~~~--~~~~~~----------~~~~~-~~~~~~~~~~~v~~~~~  266 (285)
                      +++ .+.+|.+++.|+....  ....+.          +.+.+ +.+..+.+.+++|+..-
T Consensus       240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~  299 (386)
T 3sjl_D          240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  299 (386)
T ss_dssp             EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEec
Confidence            333 5668999999987653  222222          12222 33444566777888643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.19  E-value=3e-09  Score=84.28  Aligned_cols=152  Identities=11%  Similarity=0.048  Sum_probs=104.5

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i   84 (285)
                      ..+..|+|++..+++++..++.|..|+. +++.          ..     + ..+...+..++++++|+++++.. ++.|
T Consensus        47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~----------~~-----~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v  109 (305)
T 3dr2_A           47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV----------DV-----L-LDATAFTNGNAVDAQQRLVHCEHGRRAI  109 (305)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE----------EE-----E-EESCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred             ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE----------EE-----E-eCCCCccceeeECCCCCEEEEECCCCEE
Confidence            4578899987447888888999999987 3431          00     1 22345688999999999877764 6789


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc---eeeeeEEEecCCCcEEEE----ecC-------------CCe
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMS----GSD-------------CGH  144 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~----~~~-------------dg~  144 (285)
                      .+|+.. +                + ...+......   ..+..+++ +++|++.++    |..             .+.
T Consensus       110 ~~~~~~-g----------------~-~~~~~~~~~~~~~~~~~~i~~-d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A          110 TRSDAD-G----------------Q-AHLLVGRYAGKRLNSPNDLIV-ARDGAIWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             EEECTT-S----------------C-EEEEECEETTEECSCCCCEEE-CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             EEECCC-C----------------C-EEEEEeccCCCccCCCCCEEE-CCCCCEEEeCcCCCccccccccccccccCCCe
Confidence            999875 3                1 2222211111   12677887 999998886    432             367


Q ss_pred             EEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC------CcEEEEcCCCC
Q 023246          145 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPT  195 (285)
Q Consensus       145 v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~~  195 (285)
                      |+.+|..+++.....  .......++|+|+++.|+.+...      +.|..|++...
T Consensus       171 v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          171 VYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             EEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            888888777655433  34567889999999987776654      68999998643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.12  E-value=1.8e-09  Score=95.18  Aligned_cols=196  Identities=9%  Similarity=0.118  Sum_probs=114.7

Q ss_pred             ceeEEEEcCCCCcEEEEe-----eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVG-----GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      .+.+++||||+ .+||.+     +...+|++||+.+++..              .....  ......++|+ |++.|+.+
T Consensus       130 ~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------~~~~~--~~k~~~~~Ws-Dg~~l~y~  191 (693)
T 3iuj_A          130 ALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPL--------------ETPLK--DVKFSGISWL-GNEGFFYS  191 (693)
T ss_dssp             EEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEE--------------EEEEE--EEESCCCEEE-TTTEEEEE
T ss_pred             EEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCC--------------ccccC--CceeccEEEe-CCCEEEEE
Confidence            47788999987 666632     22357999999988731              11001  1112467899 99866664


Q ss_pred             -cCC-------------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc-CceeeeeEEEecCCCcEEEEec----
Q 023246           80 -NDE-------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGS----  140 (285)
Q Consensus        80 -~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~----  140 (285)
                       .+.             .|++|++.+..              .+....+.... .......+.+ +|++++++...    
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~--------------~~~~~v~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          192 SYDKPDGSELSARTDQHKVYFHRLGTAQ--------------EDDRLVFGAIPAQHHRYVGATV-TEDDRFLLISAANST  256 (693)
T ss_dssp             ESSCCC-------CCCCEEEEEETTSCG--------------GGCEEEESCSGGGCCSEEEEEE-CTTSCEEEEEEESSS
T ss_pred             EecCcccccccccCCCcEEEEEECCCCc--------------ccceEEEecCCCCCeEEEEEEE-cCCCCEEEEEEccCC
Confidence             343             39999987651              01122333222 1222667776 99999885433    


Q ss_pred             CCCeEEEEecCCCc-eEEEEecccccceEeEEcCCCCeEEEE-ecC---CcEEEEcCCCCCC---CCCCCCcccceeecc
Q 023246          141 DCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATC-GIE---KTVKLWAPMPTDF---PPLPDNAEKIMKANK  212 (285)
Q Consensus       141 ~dg~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d---~~i~iwd~~~~~~---~~~~~~~~~~~~~~~  212 (285)
                      ....|+++|+.+++ ....+..+....... |++++..|+.. ..+   +.|..+++.++..   ..+..+...+.  . 
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~-  332 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T-  332 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E-
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E-
Confidence            23589999998764 345555565555554 66666664444 333   5788999877543   33434444443  2 


Q ss_pred             ccCCCc-eEEEeCCCC--eEEEEEeccc
Q 023246          213 QGREDH-SRITLTPDV--IMHVLRLQRR  237 (285)
Q Consensus       213 ~~~~~~-~~~~~s~d~--~i~vwd~~~~  237 (285)
                      .....+ ++++...++  .|++|++..+
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            233333 444444454  6888887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.11  E-value=2.5e-08  Score=78.61  Aligned_cols=161  Identities=7%  Similarity=0.043  Sum_probs=103.6

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-C-
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d-   81 (285)
                      ..+.+++++|++ .++++ . ++.|.+||..+++....          ... ........+..++++|+|+++++.. . 
T Consensus        54 ~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~----------~~~-~~~~~~~~~~di~~d~dG~l~~~~~~~~  119 (297)
T 3g4e_A           54 APVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVL----------ATV-DNDKKNNRFNDGKVDPAGRYFAGTMAEE  119 (297)
T ss_dssp             SCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEE----------EEC-CTTCSSEEEEEEEECTTSCEEEEEEECC
T ss_pred             CceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEE----------Eec-CCCCCCCCCCCEEECCCCCEEEecCCcc
Confidence            467899999986 55554 3 56899999987753211          000 0011234688999999999777642 1 


Q ss_pred             --------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEec--
Q 023246           82 --------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKK--  150 (285)
Q Consensus        82 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~--  150 (285)
                              ..-.||.+...                .....+......  ...++| +|+++.+ ++.+.++.|.+|++  
T Consensus       120 ~~~~~~~~~~~~l~~~d~~----------------g~~~~~~~~~~~--pngi~~-spdg~~lyv~~~~~~~i~~~~~d~  180 (297)
T 3g4e_A          120 TAPAVLERHQGALYSLFPD----------------HHVKKYFDQVDI--SNGLDW-SLDHKIFYYIDSLSYSVDAFDYDL  180 (297)
T ss_dssp             SBTTBCCTTCEEEEEECTT----------------SCEEEEEEEESB--EEEEEE-CTTSCEEEEEEGGGTEEEEEEECT
T ss_pred             cccccccCCCcEEEEEECC----------------CCEEEEeecccc--ccceEE-cCCCCEEEEecCCCCcEEEEeccC
Confidence                    23455555432                122222222222  678886 9999866 55666889999987  


Q ss_pred             CCCceE-----EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          151 KGGKLV-----RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       151 ~~~~~~-----~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      .++...     ..+..+...+..++++++|++.++....+.|..||+.++++
T Consensus       181 ~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~  232 (297)
T 3g4e_A          181 QTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR  232 (297)
T ss_dssp             TTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE
T ss_pred             CCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE
Confidence            455432     22333445678999999998887777778899999986653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.09  E-value=1.1e-08  Score=82.36  Aligned_cols=233  Identities=9%  Similarity=-0.004  Sum_probs=135.1

Q ss_pred             ceeEEEEcCCCCcEEEEee--CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c-
Q 023246            5 RLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N-   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~-   80 (285)
                      ....++++|++ +++++..  .++.++||.+.+++... +  +.    ..  .....|...+..++++++++++++. . 
T Consensus        18 ~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~~-~--p~----~~--~~~~~~~~~p~gv~~d~~g~L~v~D~g~   87 (343)
T 2qe8_A           18 APGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLIP-F--PP----QS--GNAIITFDTVLGIKSDGNGIVWMLDNGN   87 (343)
T ss_dssp             CEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEEE-S--CC----CC--SSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred             CcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCeec-C--CC----cc--cCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence            46789999986 7888753  23446677665443210 0  00    00  1113456789999999999877764 2 


Q ss_pred             ----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc----CceeeeeEEEecCC-CcEEEEec---CCCeEEEE
Q 023246           81 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR----NSQTVKGVNFFGPN-DEYVMSGS---DCGHLFIW  148 (285)
Q Consensus        81 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~-~~~l~~~~---~dg~v~vw  148 (285)
                          +..|.+||+.++                +.+..+....    ....+..+++ +++ +..+++-.   .++.|.+|
T Consensus        88 ~~~~~~~i~~~d~~tg----------------~~~~~~~~~~~~~~~~~~~~~v~v-d~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           88 QSKSVPKLVAWDTLNN----------------QLSRVIYLPPPITLSNSFVNDLAV-DLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             HHTSCCEEEEEETTTT----------------EEEEEEECCTTTSCTTCCCCEEEE-ETTTTEEEEEECCSGGGCEEEEE
T ss_pred             CcCCCCeEEEEECCCC----------------eEEEEEECChhhcccccccceEEE-ecCCCEEEEEcCccCCCCeEEEE
Confidence                578999999876                4445444221    1122678887 765 44445555   67899999


Q ss_pred             ecCCCceEEEEeccc-----------------------------ccceEeEEcCCCCeEEEEecCC-cEEEEcCC---CC
Q 023246          149 KKKGGKLVRLMVGDR-----------------------------HVVNQLEPHPHIPMFATCGIEK-TVKLWAPM---PT  195 (285)
Q Consensus       149 d~~~~~~~~~~~~h~-----------------------------~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~---~~  195 (285)
                      |+.+++..+.+.+|.                             ..+..++|+|+++.|+.+..++ .+..++..   ..
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            998887766554321                             1357899999999888877665 44444321   11


Q ss_pred             CC------CCCC--CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEeeec---cccccCCCCCcCeEEEe
Q 023246          196 DF------PPLP--DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRY---NAADFESDEEEGETYLL  264 (285)
Q Consensus       196 ~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~  264 (285)
                      .+      ..+.  ++......+ ....++.++++...++.|.+||...++.. .+...+   ....+..+. ++.+|+.
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgi-a~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~-~g~l~v~  307 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGI-SIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVTDEKLSWTDSFNFGS-DGYLYFD  307 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCE-EECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEECGGGSCEEEEEECT-TSCEEEE
T ss_pred             CCChhhhhcceEecccCCCCceE-EECCCCCEEEEccCCCeEEEEECCCCCEE-EEEECCceecCCeeEECC-CCcEEEE
Confidence            11      0110  010111111 11234568888888899999997344322 222111   122333333 3678887


Q ss_pred             ecC
Q 023246          265 GFS  267 (285)
Q Consensus       265 ~~~  267 (285)
                      ...
T Consensus       308 ~~~  310 (343)
T 2qe8_A          308 CNQ  310 (343)
T ss_dssp             ECC
T ss_pred             eCc
Confidence            643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.04  E-value=5.4e-08  Score=77.77  Aligned_cols=155  Identities=10%  Similarity=-0.021  Sum_probs=98.9

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCC-CCCcceEEEEEecCCCEEEEec--
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYN--   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~--   80 (285)
                      ..+.+++|+|++ .++++. .+ .|.+||..+++....            ..... .....+..++++|+|+++++..  
T Consensus        90 ~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~------------~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           90 FMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLH------------AELESDLPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             SCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEE------------ECSSTTCTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEE------------eeCCCCCCCCCCCCEEECCCCCEEEEeCCC
Confidence            357889999975 666543 44 489999887753111            00001 1234688999999999777643  


Q ss_pred             -----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecC--C
Q 023246           81 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKK--G  152 (285)
Q Consensus        81 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~--~  152 (285)
                           .+.|..++  .+                 ....+......  ...++| +++++.+ ++.+.++.|.+|++.  +
T Consensus       155 ~~~~~~~~l~~~~--~g-----------------~~~~~~~~~~~--~~~i~~-s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          155 KAETGAGSIYHVA--KG-----------------KVTKLFADISI--PNSICF-SPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             TCCTTCEEEEEEE--TT-----------------EEEEEEEEESS--EEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             cCCCCceEEEEEe--CC-----------------cEEEeeCCCcc--cCCeEE-cCCCCEEEEEECCCCEEEEEEccccc
Confidence                 24555555  33                 22223222222  567886 9999866 445567899999985  5


Q ss_pred             C-ce-----EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          153 G-KL-----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       153 ~-~~-----~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      + +.     +..+......+..+++++++.+.++...++.|..|++...
T Consensus       213 Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~  261 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN  261 (326)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC
T ss_pred             CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC
Confidence            5 32     2233333456788999999988777666788999998543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.04  E-value=4.2e-08  Score=80.93  Aligned_cols=158  Identities=11%  Similarity=0.041  Sum_probs=101.3

Q ss_pred             EEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEecCCcEE
Q 023246            9 IVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYNDELVY   85 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~d~~i~   85 (285)
                      ++|+|++ ..|+++..++  .|.+|+...+.....           ...........+.+++++| ++.++++..++.|+
T Consensus       176 ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~~-----------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~  243 (409)
T 3hrp_A          176 PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPTR-----------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFG  243 (409)
T ss_dssp             CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEEE-----------EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEE
T ss_pred             eeEecCC-CcEEEEecCCCceEEEEEcCCCceeEE-----------eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEE
Confidence            8899986 6777777665  688888765431100           0000011345677899999 55666644588999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEe-----ecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVY-----SGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      .||....                 ....+     .+.....+...++| +| ++.++++-...+.|+.|+... + +..+
T Consensus       244 ~~d~~~~-----------------~~~~~~~~~~~g~~~~~P~~~ia~-~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~  303 (409)
T 3hrp_A          244 RFNVKTQ-----------------EVTLIKQLELSGSLGTNPGPYLIY-YFVDSNFYMSDQNLSSVYKITPDG-E-CEWF  303 (409)
T ss_dssp             EEETTTC-----------------CEEEEEECCCCSCCCCSSCCEEEE-ETTTTEEEEEETTTTEEEEECTTC-C-EEEE
T ss_pred             EEECCCC-----------------CEEEEecccccCCCCCCccccEEE-eCCCCEEEEEeCCCCEEEEEecCC-C-EEEE
Confidence            9998765                 22222     11111100128887 88 567777777889999999863 3 3333


Q ss_pred             eccc---------------ccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCC
Q 023246          160 VGDR---------------HVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP  198 (285)
Q Consensus       160 ~~h~---------------~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~  198 (285)
                      .++.               .....++++|+++++++-. .++.|+.|++..+.+.
T Consensus       304 ~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          304 CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            3332               3478899999999877777 7889999997665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.02  E-value=2.3e-07  Score=75.50  Aligned_cols=155  Identities=11%  Similarity=-0.037  Sum_probs=93.7

Q ss_pred             EEEEcCCCCcEEEEee----------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            8 AIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .++++||+ ..++++.          .++.|.+||..+.+....+....+      ...  .+......+.|+|+|++|+
T Consensus        70 ~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~------~~~--~~g~~p~~~~~spDG~~l~  140 (373)
T 2mad_H           70 NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA------PRF--DVGPYSWMNANTPNNADLL  140 (373)
T ss_pred             CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc------ccc--ccCCCccceEECCCCCEEE
Confidence            78999987 6666654          367899999987764332221100      000  0112345899999999877


Q ss_pred             Eec---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceE-eecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC
Q 023246           78 SYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus        78 s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  153 (285)
                      .++   ++.|.++| .++                +.+.. +....      ++.+.....+.+++.+.||.+.++|. ++
T Consensus       141 v~n~~~~~~v~viD-~t~----------------~~~~~~i~~~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          141 FFQFAAGPAVGLVV-QGG----------------SSDDQLLSSPT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             EEecCCCCeEEEEE-CCC----------------CEEeEEcCCCc------eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            643   57899999 876                45444 33211      12221223345667778999999999 88


Q ss_pred             ceEEEEe-----cccccc-eEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          154 KLVRLMV-----GDRHVV-NQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       154 ~~~~~~~-----~h~~~v-~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      +.+....     ....++ ....+.+++..++..+..+.+.+.|+...
T Consensus       197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            7764322     111121 23455666655444446788999998654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.01  E-value=4.5e-07  Score=73.77  Aligned_cols=145  Identities=10%  Similarity=-0.051  Sum_probs=95.3

Q ss_pred             EcCCCCcEEEEeeC--CC---cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-----
Q 023246           11 IDPRNPNYFAVGGS--DE---YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----   80 (285)
Q Consensus        11 ~s~~~~~~l~tg~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-----   80 (285)
                      ..|++ ..+++...  ..   +|.+||..+++..              ..+..+ ..+  .++++|+|+++..++     
T Consensus        28 ~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~--------------~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~   89 (373)
T 2mad_H           28 PGADG-RRSYINLPAHHSAIIQQWVLDAGSGSIL--------------GHVNGG-FLP--NPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             CCCCC-CEEEEeCCcccCCccEEEEEECCCCeEE--------------EEecCC-CCC--CeEECCCCCEEEEEeccccc
Confidence            34654 55555543  33   8899999988732              112111 223  899999999777653     


Q ss_pred             ------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cC----ceeeeeEEEecCCCcEEEEecC--CCeEEE
Q 023246           81 ------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RN----SQTVKGVNFFGPNDEYVMSGSD--CGHLFI  147 (285)
Q Consensus        81 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~l~~~~~--dg~v~v  147 (285)
                            ++.|.+||..+.                +.+..+... ..    ......+.+ +|++++++.++.  ++.|.+
T Consensus        90 ~~rg~~~~~v~viD~~t~----------------~~~~~i~~~~~~~~~~g~~p~~~~~-spDG~~l~v~n~~~~~~v~v  152 (373)
T 2mad_H           90 IAKGKRTDYVEVFDPVTF----------------LPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             cccCCCCCeEEEEECCCC----------------cEEEEEECCCccccccCCCccceEE-CCCCCEEEEEecCCCCeEEE
Confidence                  577999999766                444444321 00    011456776 999999998764  588999


Q ss_pred             EecCCCceEEE-EecccccceEeEEcCCCC-eEEEEecCCcEEEEcCCCCC
Q 023246          148 WKKKGGKLVRL-MVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       148 wd~~~~~~~~~-~~~h~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~  196 (285)
                      +| .+++.+.. +... .   ++.+.|+++ .+++.+.||.+.+++. .++
T Consensus       153 iD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~  197 (373)
T 2mad_H          153 VV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG  197 (373)
T ss_pred             EE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence            99 99998877 6532 1   244556554 4677778999999999 554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=4.8e-08  Score=79.05  Aligned_cols=225  Identities=11%  Similarity=-0.011  Sum_probs=127.3

Q ss_pred             EEEEcCCCCcEEEEee----------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            8 AIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .++++|++ ..++++.          .++.|.+||..+++....+..+..      ..  .........+.|+|+|+++.
T Consensus        82 ~va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g------~r--~~~g~~P~~~a~spDGk~ly  152 (386)
T 3sjl_D           82 NPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA------PR--FLVGTYPWMTSLTPDGKTLL  152 (386)
T ss_dssp             EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC------CC--CCBSCCGGGEEECTTSSEEE
T ss_pred             cEEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc------cc--cccCCCCceEEEcCCCCEEE
Confidence            49999987 5554443          367899999998874332211100      00  00112345789999999766


Q ss_pred             Ee--c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCC-C
Q 023246           78 SY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-G  153 (285)
Q Consensus        78 s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~-~  153 (285)
                      .+  . ++.|.++|+.+.                +.+.++....    . ...+ +...+.+++.+.||.+.+.++.+ +
T Consensus       153 Van~~~~~~VsVID~~t~----------------~vv~tI~v~g----~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          153 FYQFSPAPAVGVVDLEGK----------------AFKRMLDVPD----C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             EEECSSSCEEEEEETTTT----------------EEEEEEECCS----E-EEEE-EEETTEEEEEETTSCEEEEECCSSS
T ss_pred             EEEcCCCCeEEEEECCCC----------------cEEEEEECCC----c-ceee-cCCCceeEEECCCCCEEEEECCCCC
Confidence            64  2 689999999987                5666664322    1 1222 44456677888899999999876 5


Q ss_pred             ceEEEEeccc----ccce-EeEEc-CCCCeEEEEecCCcEEEEcCCCCCC---CCCC--C----------Ccccceeecc
Q 023246          154 KLVRLMVGDR----HVVN-QLEPH-PHIPMFATCGIEKTVKLWAPMPTDF---PPLP--D----------NAEKIMKANK  212 (285)
Q Consensus       154 ~~~~~~~~h~----~~v~-~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~~---~~~~--~----------~~~~~~~~~~  212 (285)
                      +.......+.    .++. ..+|. ++|++++ .+.+|.|.+.|+.+...   ..+.  .          .....+.+  
T Consensus       211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~--  287 (386)
T 3sjl_D          211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY--  287 (386)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE--
T ss_pred             eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeE--
Confidence            5543222111    1221 24554 6775544 55589999999976642   1111  0          00011111  


Q ss_pred             ccCCCceEEEeC---------CCCeEEEEEecccccceeEeeeccccccCCCCCcC-eEEEeec
Q 023246          213 QGREDHSRITLT---------PDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEG-ETYLLGF  266 (285)
Q Consensus       213 ~~~~~~~~~~~s---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  266 (285)
                      .....+++++..         +...|.+.|+.+.+.+.++........+....++. ++|+...
T Consensus       288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred             CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence            112233444432         23679999999998888775444333344433332 3444443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.3e-07  Score=72.63  Aligned_cols=194  Identities=9%  Similarity=0.043  Sum_probs=125.5

Q ss_pred             eeEEEEcCCCCcEEEEeeC--CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cC
Q 023246            6 LNAIVIDPRNPNYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND   81 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d   81 (285)
                      ...++|+|++ .++++.+.  ++.|+++|+.+++....+..             .. ......+++.  +..|.. . .+
T Consensus        23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------~~-~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-------------DD-SYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------------CT-TCCEEEEEEE--TTEEEEEETTC
T ss_pred             cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------------CC-CcceEEEEEe--CCEEEEEEecC
Confidence            4689999974 55555543  68999999999985432111             11 1122345554  444444 4 48


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.+.++|..+.                +.+.++... .+. -..+   +++++.++.+..++.|.++|..+.+.+..+..
T Consensus        86 ~~v~viD~~t~----------------~v~~~i~~g-~~~-g~gl---t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           86 NIGFIYDRRTL----------------SNIKNFTHQ-MKD-GWGL---ATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             SEEEEEETTTT----------------EEEEEEECC-SSS-CCEE---EECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CEEEEEECCCC----------------cEEEEEECC-CCC-eEEE---EECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            99999999877                567777543 111 2334   44666666666789999999999998888763


Q ss_pred             cc-----ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCc-------------ccceeeccccCCCceEEE
Q 023246          162 DR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNA-------------EKIMKANKQGREDHSRIT  222 (285)
Q Consensus       162 h~-----~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~  222 (285)
                      ..     ..++.+.|. ++..++....++.|.+.|+.++++ ..+.-..             .....+.......+++++
T Consensus       145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            21     136678888 676566665678999999998874 2222110             112333333344678899


Q ss_pred             eCCCCeEEEEEecccc
Q 023246          223 LTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~~  238 (285)
                      +...+.|++.++....
T Consensus       224 gk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             ETTCSEEEEEEEEECC
T ss_pred             CCCCCeEEEEEEeccc
Confidence            9999999999987753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.95  E-value=6.5e-07  Score=69.25  Aligned_cols=202  Identities=7%  Similarity=-0.030  Sum_probs=120.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~   82 (285)
                      ...+++|+|+++.++++-...+.|..+++......               .+..........+++++++. ++++. ..+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~  101 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT---------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------------EEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------------EEEECCCCCccEEEEEecCCeEEEEECCCC
Confidence            34689999976566666667889999998754311               11111124678999999765 44443 478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC---CCeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.+++....                 ....+.... ......+++ ++++..++.+..   .+.|..+++.. +....+
T Consensus       102 ~I~~~~~~g~-----------------~~~~~~~~~-~~~P~~i~v-d~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~  161 (267)
T 1npe_A          102 RIEVAKMDGT-----------------QRRVLFDTG-LVNPRGIVT-DPVRGNLYWTDWNRDNPKIETSHMDG-TNRRIL  161 (267)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSS-CSSEEEEEE-ETTTTEEEEEECCSSSCEEEEEETTS-CCCEEE
T ss_pred             EEEEEEcCCC-----------------CEEEEEECC-CCCccEEEE-eeCCCEEEEEECCCCCcEEEEEecCC-CCcEEE
Confidence            8999998643                 222222111 112678887 886555444332   47888888763 333333


Q ss_pred             e-cccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          160 V-GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       160 ~-~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      . ........++++|++..| ++-...+.|..+++.+.....+.........+.  ...+.++++-...+.|.++|..++
T Consensus       162 ~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT--SYGKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE--EETTEEEEEETTTTEEEEEETTTT
T ss_pred             EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE--EeCCEEEEEECCCCeEEEEeCCCC
Confidence            2 223467889999987765 444456789999987543221110111111221  123446666667788999988777


Q ss_pred             ccceeE
Q 023246          238 QTLAYR  243 (285)
Q Consensus       238 ~~~~~~  243 (285)
                      +.+..+
T Consensus       240 ~~~~~i  245 (267)
T 1npe_A          240 KEMDTF  245 (267)
T ss_dssp             EEEEEE
T ss_pred             CceEEE
Confidence            665554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=1.5e-07  Score=77.38  Aligned_cols=174  Identities=7%  Similarity=-0.068  Sum_probs=104.8

Q ss_pred             CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-----------cCCcEEEEEcCCCCC
Q 023246           26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-----------NDELVYLFEKNMGLG   94 (285)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-----------~d~~i~iwd~~~~~~   94 (285)
                      +.|.++|..+++.+..              +..+ ..+  .+.++|+|++|..+           .++.|.++|..+.  
T Consensus        99 ~~VsVID~~t~~vv~~--------------I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--  159 (426)
T 3c75_H           99 TQQFVIDGSTGRILGM--------------TDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--  159 (426)
T ss_dssp             EEEEEEETTTTEEEEE--------------EEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--
T ss_pred             CeEEEEECCCCEEEEE--------------EECC-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--
Confidence            7999999998874322              2112 123  79999999866553           2578999999887  


Q ss_pred             CCCCCCCCccccCCCCceEeecc--cC---ceeeeeEEEecCCCcEEEEecC--CCeEEEEecCCCceEEEEecccccce
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGH--RN---SQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLMVGDRHVVN  167 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~~~~~~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~  167 (285)
                                    +.+..+...  ..   ......+.+ +|++++++.+..  ++.|.+.|+.+++.+.++.....   
T Consensus       160 --------------~vv~~I~v~g~~r~~~g~~P~~~~~-spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---  221 (426)
T 3c75_H          160 --------------LPIADIELPDAPRFLVGTYQWMNAL-TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---  221 (426)
T ss_dssp             --------------CEEEEEEETTCCCCCBSCCGGGSEE-CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---
T ss_pred             --------------cEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---
Confidence                          565555421  00   011456776 999999988764  68899999999999888764221   


Q ss_pred             EeEEcCCC-CeEEEEecCCcEEEEcCCCCCCC-----CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          168 QLEPHPHI-PMFATCGIEKTVKLWAPMPTDFP-----PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       168 ~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                       ....|++ +.+++.+.||.+.+.+...+++.     .+.....++........+...++..+..+.+.+.|+...
T Consensus       222 -~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          222 -YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             -EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             -eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence             2233433 34556666777766666444332     111111111111111223333344456789999998654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.93  E-value=9.4e-08  Score=84.31  Aligned_cols=198  Identities=8%  Similarity=-0.019  Sum_probs=116.9

Q ss_pred             eEEEEcCCCCcEEEEeeCCC-------------cEEEEEccCCcccCCcCCCCCcccccccccCCC-CCcceEEEEEecC
Q 023246            7 NAIVIDPRNPNYFAVGGSDE-------------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAYSNT   72 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg-------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~   72 (285)
                      ..++|+ |+ ..|+.++.+.             .|++|++.++.....          .+... .. |...+..+.|+|+
T Consensus       178 ~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~----------~v~~~-~~~~~~~~~~~~~SpD  244 (693)
T 3iuj_A          178 SGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR----------LVFGA-IPAQHHRYVGATVTED  244 (693)
T ss_dssp             CCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE----------EEESC-SGGGCCSEEEEEECTT
T ss_pred             ccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccce----------EEEec-CCCCCeEEEEEEEcCC
Confidence            568899 87 6677776664             388999877642100          11111 22 4445788999999


Q ss_pred             CCEEEE-ec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCC---C
Q 023246           73 SELLIS-YN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDC---G  143 (285)
Q Consensus        73 ~~~l~s-~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d---g  143 (285)
                      |++|+. ..    ...|+++|+.++.               .....+..+...  .... + ++++. +++....+   +
T Consensus       245 g~~l~~~~~~~~~~~~i~~~d~~~~~---------------~~~~~l~~~~~~--~~~~-~-~~~g~~l~~~t~~~~~~~  305 (693)
T 3iuj_A          245 DRFLLISAANSTSGNRLYVKDLSQEN---------------APLLTVQGDLDA--DVSL-V-DNKGSTLYLLTNRDAPNR  305 (693)
T ss_dssp             SCEEEEEEESSSSCCEEEEEETTSTT---------------CCCEEEECSSSS--CEEE-E-EEETTEEEEEECTTCTTC
T ss_pred             CCEEEEEEccCCCCcEEEEEECCCCC---------------CceEEEeCCCCc--eEEE-E-eccCCEEEEEECCCCCCC
Confidence            997654 22    3589999987651               244555555543  3333 3 44444 44454443   6


Q ss_pred             eEEEEecCCCce--EEEEecccccceEeEEcCCCCeEEEEec-CC--cEEEEcCCCCCCCCCCC-CcccceeeccccCCC
Q 023246          144 HLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPD-NAEKIMKANKQGRED  217 (285)
Q Consensus       144 ~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~  217 (285)
                      .|..+++.++..  ...+..|...+.  .|+|++++|+.... ++  .|++|++.++....+.. ....+..........
T Consensus       306 ~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          306 RLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             EEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCS
T ss_pred             EEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCC
Confidence            899999987654  345555665554  88999998776654 44  68999988665433321 112222222222233


Q ss_pred             ceEEEeCC---CCeEEEEEecccc
Q 023246          218 HSRITLTP---DVIMHVLRLQRRQ  238 (285)
Q Consensus       218 ~~~~~~s~---d~~i~vwd~~~~~  238 (285)
                      .++++.+.   -+.++.||+.+++
T Consensus       384 ~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          384 ALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEecCCCCCCEEEEEECCCCe
Confidence            34444333   2789999887654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=4.4e-08  Score=78.86  Aligned_cols=213  Identities=12%  Similarity=0.081  Sum_probs=116.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeC-----CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEE
Q 023246            4 IRLNAIVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLI   77 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~   77 (285)
                      ..+.++++++++ +++++-..     ++.|.+||+.+++....+..+..         ...+...+..+++++++ ..++
T Consensus        67 ~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~---------~~~~~~~~~~v~vd~~~g~~yv  136 (343)
T 2qe8_A           67 DTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP---------ITLSNSFVNDLAVDLIHNFVYI  136 (343)
T ss_dssp             SCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT---------TSCTTCCCCEEEEETTTTEEEE
T ss_pred             eEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh---------hcccccccceEEEecCCCEEEE
Confidence            467899999975 66665443     57899999998874332221110         01233456899999864 4445


Q ss_pred             E-e---cCCcEEEEEcCCCCCCC--CC--CCCCcc---ccCCCCceEeeccc----CceeeeeEEEecCCCcEEEEecCC
Q 023246           78 S-Y---NDELVYLFEKNMGLGPS--PL--SLSPED---LQKREEPQVYSGHR----NSQTVKGVNFFGPNDEYVMSGSDC  142 (285)
Q Consensus        78 s-~---~d~~i~iwd~~~~~~~~--~~--~~~~~~---~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d  142 (285)
                      + .   .++.|.+||..++....  ..  ......   ......+.......    -...+..+++ +|+++.|+.+...
T Consensus       137 td~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~-s~dg~~ly~~~~~  215 (343)
T 2qe8_A          137 SDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL-DAENEWLYLSPMH  215 (343)
T ss_dssp             EECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE-CTTSCEEEEEESS
T ss_pred             EcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe-ccCCCEEEEEeCC
Confidence            5 3   47889999987652000  00  000000   00000000000000    0012678997 9999888776655


Q ss_pred             C-eEEEEecC---CCce-----EE--EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeec
Q 023246          143 G-HLFIWKKK---GGKL-----VR--LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN  211 (285)
Q Consensus       143 g-~v~vwd~~---~~~~-----~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  211 (285)
                      + .++.++..   .+..     ..  ...++.+....+++++++.++++...++.|.+||...+++..+.       .. 
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~-------~~-  287 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLV-------TD-  287 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEE-------EC-
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEE-------EC-
Confidence            4 66666532   1110     00  11234456778999999999888888999999998443321111       00 


Q ss_pred             cccCCCceEEEeCCCCeEEEEEecc
Q 023246          212 KQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       212 ~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      . ......-++.+.++.+++-+.+.
T Consensus       288 ~-~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          288 E-KLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             G-GGSCEEEEEECTTSCEEEEECCG
T ss_pred             C-ceecCCeeEECCCCcEEEEeCcc
Confidence            0 00011334556678777776544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=1.8e-09  Score=87.92  Aligned_cols=145  Identities=9%  Similarity=-0.021  Sum_probs=78.9

Q ss_pred             CCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEec
Q 023246           72 TSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK  150 (285)
Q Consensus        72 ~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~  150 (285)
                      ++..+++ +.|+.|+.||..++                +.+..+..  ..  +.+..+ ..++..+++++.||.|+.||.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG----------------~~~W~~~~--~~--~~s~p~-~~~g~~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG----------------SIKWTLKE--DP--VLQVPT-HVEEPAFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC----------------CEEEEEEC--CC--SCCCC------CCEEECTTTCCEEEC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCC----------------CEEEEecC--CC--ceecce-EcCCCEEEEeCCCCEEEEEEC
Confidence            3445555 56999999999988                56666655  22  444433 456777888889999999999


Q ss_pred             CCCceEEEEecccc-cce-EeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCC
Q 023246          151 KGGKLVRLMVGDRH-VVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       151 ~~~~~~~~~~~h~~-~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      .+++.+..+..+.. .+. +..+. .+..+++++.|+.|+.||+++++. ..+..+.. . .   ..+.+..+++++.++
T Consensus        67 ~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~-~---~~p~~~~v~~~~~dg  140 (369)
T 2hz6_A           67 KNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-D-S---LSPSTSLLYLGRTEY  140 (369)
T ss_dssp             ---CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEE
T ss_pred             CCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-c-c---ccccCCEEEEEecCC
Confidence            99988776654322 111 11111 345677888899999999988764 33322221 1 1   112455788888999


Q ss_pred             eEEEEEecccccceeE
Q 023246          228 IMHVLRLQRRQTLAYR  243 (285)
Q Consensus       228 ~i~vwd~~~~~~~~~~  243 (285)
                      .|+.||.++++.+-..
T Consensus       141 ~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          141 TITMYDTKTRELRWNA  156 (369)
T ss_dssp             EEECCCSSSSSCCCEE
T ss_pred             EEEEEECCCCCEEEeE
Confidence            9999999888765444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.86  E-value=2e-07  Score=73.67  Aligned_cols=159  Identities=10%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE----e
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS----Y   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s----~   79 (285)
                      ..+.++++++++ +++++...++.|.+|+.. ++....          . ..........+..++++++|+++++    +
T Consensus        86 ~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~----------~-~~~~~~~~~~~~~i~~d~dG~l~~td~~~g  152 (305)
T 3dr2_A           86 AFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLL----------V-GRYAGKRLNSPNDLIVARDGAIWFTDPPFG  152 (305)
T ss_dssp             SCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEE----------E-CEETTEECSCCCCEEECTTSCEEEECCSGG
T ss_pred             CccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEE----------E-eccCCCccCCCCCEEECCCCCEEEeCcCCC
Confidence            457789999986 677666666889999875 432100          0 0000111234678999999998885    2


Q ss_pred             c--------------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC---
Q 023246           80 N--------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---  142 (285)
Q Consensus        80 ~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---  142 (285)
                      .              .+.|+.||..++                 .+..+. ....  ...++| +|+++.++.+...   
T Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~d~~~g-----------------~~~~~~-~~~~--p~gl~~-spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          153 LRKPSQGCPADPELAHHSVYRLPPDGS-----------------PLQRMA-DLDH--PNGLAF-SPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             GSCGGGSCCCCCSSSCEEEEEECSSSC-----------------CCEEEE-EESS--EEEEEE-CTTSSEEEEEECCC--
T ss_pred             ccccccccccccccCCCeEEEEcCCCC-----------------cEEEEe-cCCC--CcceEE-cCCCCEEEEEecCCcC
Confidence            1              245777776554                 222232 2222  678887 9999977766554   


Q ss_pred             ---CeEEEEecCCCceE--EEE-ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC
Q 023246          143 ---GHLFIWKKKGGKLV--RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP  198 (285)
Q Consensus       143 ---g~v~vwd~~~~~~~--~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~  198 (285)
                         +.|++|++..+...  ..+ ....+.+..++++++|++.++. .+ .|.+|++.+..+.
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~  271 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLG  271 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEE
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEE
Confidence               78999998755411  111 1123456789999999965444 44 4999998655443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.84  E-value=3.1e-07  Score=75.16  Aligned_cols=157  Identities=11%  Similarity=0.120  Sum_probs=98.4

Q ss_pred             CCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCC-CcceEEEEEecCCCEEEEe-cC------CcE
Q 023246           13 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLISY-ND------ELV   84 (285)
Q Consensus        13 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s~-~d------~~i   84 (285)
                      ++...+++.|..++.|.++|+.+....     .+.+....+..+.... ......+..+|+| +++++ .+      +.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~-----p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE-----PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS-----CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC-----ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            666567777888999999999755210     0001111101110011 1245567888999 66653 23      689


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCce-eeeeEEEecCCCcEEEEec-------------------CCCe
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGS-------------------DCGH  144 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~-------------------~dg~  144 (285)
                      .++|..+.                +.+.++.....+. .-..+-| +|+++.+++..                   ....
T Consensus       167 ~vlD~~T~----------------~v~~~~~~~~~~~~~~Yd~~~-~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~  229 (462)
T 2ece_A          167 LMLDHYSF----------------EPLGKWEIDRGDQYLAYDFWW-NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR  229 (462)
T ss_dssp             EEECTTTC----------------CEEEECCSBCTTCCCCCCEEE-ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE
T ss_pred             EEEECCCC----------------eEEEEEccCCCCccccceEEE-CCCCCEEEEccCcCccccccccchhhhhhccCCE
Confidence            99999877                5666665332221 1344654 89999888874                   4789


Q ss_pred             EEEEecCCCceEEEEecc--cccceEeEE--cCCCCeEEEEe------cCCcEEEEcC
Q 023246          145 LFIWKKKGGKLVRLMVGD--RHVVNQLEP--HPHIPMFATCG------IEKTVKLWAP  192 (285)
Q Consensus       145 v~vwd~~~~~~~~~~~~h--~~~v~~~~~--~p~~~~l~t~~------~d~~i~iwd~  192 (285)
                      |.+||+.+++.+.++..-  ......+.|  +|+++++..++      .+++|.+|..
T Consensus       230 V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          230 IHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             EEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence            999999998888877642  133445555  99999955554      5668876554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.84  E-value=1.1e-07  Score=78.14  Aligned_cols=229  Identities=10%  Similarity=0.022  Sum_probs=128.1

Q ss_pred             EEEEcCCCCcEEEEee----------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            8 AIVIDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .++++|++ ..++++.          .++.|.++|..+++....+.....      ..  .........+.|+|+|+++.
T Consensus       122 gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~------~r--~~~g~~P~~~~~spDGk~ly  192 (426)
T 3c75_H          122 HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA------PR--FLVGTYQWMNALTPDNKNLL  192 (426)
T ss_dssp             EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC------CC--CCBSCCGGGSEECTTSSEEE
T ss_pred             ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc------cc--cccCCCcceEEEcCCCCEEE
Confidence            79999987 5555544          467999999998875433221100      00  00012344689999999777


Q ss_pred             Eec---CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           78 SYN---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        78 s~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      .++   ++.|.+.|+.+.                +.+.++....    ...+ + ....+.+++.+.||.+.+.++.+++
T Consensus       193 V~n~~~~~~VsVID~~t~----------------kvv~~I~v~g----~~~~-~-p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          193 FYQFSPAPAVGVVDLEGK----------------TFDRMLDVPD----CYHI-F-PASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             EEECSSSCEEEEEETTTT----------------EEEEEEECCS----EEEE-E-EEETTEEEEEETTSSEEEEECCTTC
T ss_pred             EEecCCCCeEEEEECCCC----------------eEEEEEEcCC----ceee-c-cCCCcEEEEEcCCCCEEEEECCCCc
Confidence            643   578999999887                5656655322    1111 1 1123556666778888888886666


Q ss_pred             eEEEE----ecccccc-eEeEEcCCCCeEEEEecCCcEEEEcCCCCCC---CCCCC---C-------cccceeeccccCC
Q 023246          155 LVRLM----VGDRHVV-NQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PPLPD---N-------AEKIMKANKQGRE  216 (285)
Q Consensus       155 ~~~~~----~~h~~~v-~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~~~~---~-------~~~~~~~~~~~~~  216 (285)
                      .....    .....++ ..+.+.+++..++.....+.+.+.|......   ..+..   .       ......+ ....+
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v-a~s~d  329 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT-AYHRQ  329 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE-EEEGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee-EEcCC
Confidence            55322    1111121 2356789888877777789999999865432   11100   0       0000001 11222


Q ss_pred             -CceEEEeC---------CCCeEEEEEecccccceeEeeeccccccCCCCCcC-eEEEeecCC
Q 023246          217 -DHSRITLT---------PDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEG-ETYLLGFSD  268 (285)
Q Consensus       217 -~~~~~~~s---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~  268 (285)
                       .+++++..         .++.|.+.|..+.+.+..+........+....+.. .+|+....+
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s  392 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGT  392 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC
Confidence             33444432         24689999999988887774433333333333333 344444333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.80  E-value=4.2e-07  Score=72.39  Aligned_cols=180  Identities=8%  Similarity=0.012  Sum_probs=107.8

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..+..++.++.|..+|.. ++.....               ..+...+.++...+++.+++.+.++.|..+|.. +    
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g----  166 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRF---------------KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G----  166 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S----
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEE---------------cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C----
Confidence            355566667777777766 4421110               111223445566667777666667889999887 5    


Q ss_pred             CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCC
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP  176 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  176 (285)
                                  +....+......  +.++.. ++++...+..   +.|..+| .+++.+.........+.++...+++.
T Consensus       167 ------------~~~~~~~~~~~~--~~~~~~-d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~  227 (330)
T 3hxj_A          167 ------------TEKWRFKTNDAI--TSAASI-GKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT  227 (330)
T ss_dssp             ------------CEEEEEECSSCC--CSCCEE-CTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC
T ss_pred             ------------CEeEEEecCCCc--eeeeEE-cCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe
Confidence                        344444433322  666665 6777765544   8899999 77888877766667788899988875


Q ss_pred             eEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccc
Q 023246          177 MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       177 ~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      . ..++.++.+..++..+..+..+..........  ....+..+..++.++.|..+|. +++..
T Consensus       228 l-~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~--~~~~~g~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          228 I-YVTSLDGHLYAINPDGTEKWRFKTGKRIESSP--VIGNTDTIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             E-EEEETTTEEEEECTTSCEEEEEECSSCCCSCC--EECTTSCEEEECTTCEEEEECT-TSCEE
T ss_pred             E-EEEcCCCeEEEECCCCCEeEEeeCCCCccccc--eEcCCCeEEEecCCCCEEEECC-CCcEE
Confidence            4 44556777888886544332222111111111  1122346777888888999984 44433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.71  E-value=1.4e-05  Score=61.62  Aligned_cols=158  Identities=11%  Similarity=-0.014  Sum_probs=93.4

Q ss_pred             cceEEEEEecCCCE-EEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEEE
Q 023246           62 IHITGLAYSNTSEL-LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMS  138 (285)
Q Consensus        62 ~~v~~i~~s~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~  138 (285)
                      ..+..++|++++.. +++. ..+.|..++....                .....+.....  ....+++ ++++ ...++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~----------------~~~~~~~~~~~--~p~~ia~-d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------------EPTTIIRQDLG--SPEGIAL-DHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------------CCEEEECTTCC--CEEEEEE-ETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC----------------CcEEEEECCCC--CccEEEE-EecCCeEEEE
Confidence            35679999997654 4443 4789999998754                22222222112  2678887 7764 45556


Q ss_pred             ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCCCCCCCC-CCcccceeecccc
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQG  214 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  214 (285)
                      -...+.|.++++..................++++|++..|..+..   .+.|..+++.......+. ........+....
T Consensus        97 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~  176 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             ECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC
Confidence            566789999998744332222222246789999997665444443   368888887654332221 1111122222212


Q ss_pred             CCCceEEEeCCCCeEEEEEecccc
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ....++++-...+.|.++++....
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCEEEEEECCCCEEEEEecCCCc
Confidence            234566777778899999987543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.70  E-value=2.4e-05  Score=64.13  Aligned_cols=156  Identities=8%  Similarity=0.072  Sum_probs=103.5

Q ss_pred             EEEEcCCCCcEEEEeeCC------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-
Q 023246            8 AIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-   80 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-   80 (285)
                      .+...|++  ++++...+      |.|.++|..+.+....+..+..            -..--..+.|+|+++.+++++ 
T Consensus       142 ~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~------------~~~~~Yd~~~~p~~~~mvsS~w  207 (462)
T 2ece_A          142 TVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG------------DQYLAYDFWWNLPNEVLVSSEW  207 (462)
T ss_dssp             EEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT------------TCCCCCCEEEETTTTEEEECBC
T ss_pred             ceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC------------CccccceEEECCCCCEEEEccC
Confidence            46778975  66666555      7899999998886544432211            111233578899999888764 


Q ss_pred             -------------------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEEec
Q 023246           81 -------------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGS  140 (285)
Q Consensus        81 -------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~  140 (285)
                                         +.+|.+||+.+.                +.+.++...........+.| ++|++++++.++
T Consensus       208 g~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~  271 (462)
T 2ece_A          208 AVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------------KRIHSLTLGEENRMALELRPLHDPTKLMGFINM  271 (462)
T ss_dssp             CCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred             cCccccccccchhhhhhccCCEEEEEECCCC----------------cEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence                               789999999876                56666665321122445544 489999887766


Q ss_pred             ------CCCeEEEEecCCCce--EEEE--ecc----------------cccceEeEEcCCCCeEEEEe-cCCcEEEEcCC
Q 023246          141 ------DCGHLFIWKKKGGKL--VRLM--VGD----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM  193 (285)
Q Consensus       141 ------~dg~v~vwd~~~~~~--~~~~--~~h----------------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~  193 (285)
                            .+++|.+|....++.  ...+  ...                ...+..+.++|++++|..+. ..+.|.++|+.
T Consensus       272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                  567888877665432  1111  110                13578899999999976665 46899999985

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.68  E-value=4.7e-06  Score=67.75  Aligned_cols=195  Identities=10%  Similarity=0.035  Sum_probs=110.6

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..+++++.++.|..+|..+++............      ........+.+.-...++.+++.+.++.|..+|..++    
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG----  123 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDG------WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG----  123 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---------CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTC----
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccc------cccccCcccccCceEeCCEEEEEcCCCEEEEEECCCC----
Confidence            577788889999999999887543322111000      0000012233322233455566567899999999887    


Q ss_pred             CCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccc-----eEeEE
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-----NQLEP  171 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v-----~~~~~  171 (285)
                                  +.+..+......  ...... .  +..++.++.++.|+.+|..+++.+..........     .....
T Consensus       124 ------------~~~W~~~~~~~~--~~~p~~-~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~  186 (376)
T 3q7m_A          124 ------------TVAWQTKVAGEA--LSRPVV-S--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT  186 (376)
T ss_dssp             ------------CEEEEEECSSCC--CSCCEE-E--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred             ------------CEEEEEeCCCce--EcCCEE-E--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence                        444444433221  122222 2  4477778889999999999999988776432211     22222


Q ss_pred             cCCCCeEEEEecCCcEEEEcCCCCCCC-CCCCCc--c-----cceeeccc-cCCCceEEEeCCCCeEEEEEecccccc
Q 023246          172 HPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNA--E-----KIMKANKQ-GREDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       172 ~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~--~-----~~~~~~~~-~~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      .  +..++.+..++.+..+|+.+++.. ......  .     .+...... ...+..++.++.++.+..+|..+++.+
T Consensus       187 ~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~  262 (376)
T 3q7m_A          187 A--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM  262 (376)
T ss_dssp             E--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred             E--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence            2  346777888899999999877631 111000  0     00000000 012346677778889999998777654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.65  E-value=5e-06  Score=63.76  Aligned_cols=161  Identities=8%  Similarity=0.005  Sum_probs=106.6

Q ss_pred             ceEEEEEecCCCEEEEe-c--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           63 HITGLAYSNTSELLISY-N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      ....+.|++++.++++. .  ++.|.++|+.++                +.+..+..... .....+++ . .++..++.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg----------------~v~~~i~l~~~-~fgeGi~~-~-g~~lyv~t   82 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG----------------KVENIHKMDDS-YFGEGLTL-L-NEKLYQVV   82 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC----------------CEEEEEECCTT-CCEEEEEE-E-TTEEEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC----------------CEEEEEecCCC-cceEEEEE-e-CCEEEEEE
Confidence            36799999987766663 3  689999999988                56666543222 11345654 3 33555666


Q ss_pred             cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCC--ccc---ceeeccc
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN--AEK---IMKANKQ  213 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~--~~~---~~~~~~~  213 (285)
                      -.++.+.++|..+.+.+.++.....  ....++++++.++.+..++.|.++|+.+.++ ..+...  ..+   +..+.+.
T Consensus        83 ~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           83 WLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             ecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            6789999999999999988864311  2344666888776666788999999988663 222211  111   1122222


Q ss_pred             cCCCceEEEeCCCCeEEEEEecccccceeEeee
Q 023246          214 GREDHSRITLTPDVIMHVLRLQRRQTLAYRERR  246 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~  246 (285)
                        ++..++....++.|.+.|..+++.+..+...
T Consensus       161 --dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          161 --NGEVWANIWQTDCIARISAKDGTLLGWILLP  191 (266)
T ss_dssp             --TTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred             --CCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence              3455666667889999999998887777543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.65  E-value=1e-06  Score=71.23  Aligned_cols=101  Identities=6%  Similarity=-0.219  Sum_probs=65.5

Q ss_pred             cEEEEeeCCC----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-----------C
Q 023246           17 NYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-----------D   81 (285)
Q Consensus        17 ~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-----------d   81 (285)
                      ..+++-..++    +|.++|..+++.+              ..+..+.. +  .+.++|+++++..++           +
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~--------------~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~   95 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTL--------------GHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEE--------------EEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEE--------------EEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCC
Confidence            3455555455    7889999988743              22222222 3  799999998666643           6


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC-----ceeeeeEEEecCCCcEEEEecC--CCeEEE--EecC
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDEYVMSGSD--CGHLFI--WKKK  151 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~--dg~v~v--wd~~  151 (285)
                      +.|.+||..+.                +.+.++.....     ......+.+ +|++++++.+..  ...|.+  +|+.
T Consensus        96 ~~VsviD~~T~----------------~vv~~I~v~~~~~~~~g~~P~~ia~-SpDGk~lyVan~~~~~~v~V~~iD~~  157 (368)
T 1mda_H           96 DYVEVFDPVTF----------------LPIADIELPDAPRFSVGPRVHIIGN-CASSACLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             EEEEEECTTTC----------------CEEEEEEETTSCSCCBSCCTTSEEE-CTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred             CEEEEEECCCC----------------CEEEEEECCCccccccCCCcceEEE-cCCCCEEEEEccCCCCeEEEEEEchh
Confidence            88999999987                56666653210     011456776 888888877753  456777  7763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.64  E-value=6.5e-06  Score=62.57  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=102.1

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--ecCCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~~d~~   83 (285)
                      ...+.|+.  ..++.+.+.+|.|+++|+.+++.....             + .. ......+++  .+..|..  -.++.
T Consensus        57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-------------l-~~-~~FgeGit~--~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-------------R-LG-NIFAEGLAS--DGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-------------E-CT-TCCEEEEEE--CSSCEEEEESSSCE
T ss_pred             cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-------------C-CC-CcceeEEEE--eCCEEEEEEccCCE
Confidence            45677875  378888888999999999999853221             1 11 111123444  4443333  35999


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc-
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-  162 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-  162 (285)
                      +.+||..+.                +.+.++.....   -..+++   +++.|+.+..++.|.++|..+.+.+..+... 
T Consensus       118 v~V~D~~Tl----------------~~~~ti~~~~e---GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~  175 (268)
T 3nok_A          118 LFTWSGMPP----------------QRERTTRYSGE---GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL  175 (268)
T ss_dssp             EEEEETTTT----------------EEEEEEECSSC---CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred             EEEEECCcC----------------cEEEEEeCCCc---eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence            999999887                67777775332   245553   4666666667999999999999998887642 


Q ss_pred             -cc---cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          163 -RH---VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       163 -~~---~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                       ..   .++.+.|. +|+.++..-.+..|.+.|++++++
T Consensus       176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred             CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE
Confidence             22   34667777 676666665678999999988874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.62  E-value=9.4e-06  Score=61.67  Aligned_cols=151  Identities=14%  Similarity=0.155  Sum_probs=100.8

Q ss_pred             eeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--ecC
Q 023246            6 LNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YND   81 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~~d   81 (285)
                      ...+.|+ ++ .++.+.+.+|  .|+++|+.+++.......                ..........+.+..|..  -.+
T Consensus        45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----------------~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL----------------GKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC----------------CTTCCEEEEEEETTEEEEEESSS
T ss_pred             cceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec----------------CCccceeEEEEeCCEEEEEEeeC
Confidence            4568888 44 7777777766  899999999985433211                112222222333444443  349


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.+.+||..+.                +.+.++.....   -..++   ++++.|+....++.|.++|..+.+.+..+..
T Consensus       107 ~~v~v~D~~t~----------------~~~~ti~~~~e---G~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          107 GLGFVWNIRNL----------------RQVRSFNYDGE---GWGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             SEEEEEETTTC----------------CEEEEEECSSC---CCCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             CEEEEEECccC----------------cEEEEEECCCC---ceEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            99999999887                67777775432   23454   3566666666688999999999999888764


Q ss_pred             c--c---ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          162 D--R---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       162 h--~---~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      .  .   ..++.+.|. +|+..+..-.+..|.+.|++++++
T Consensus       165 ~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          165 TAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred             ccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence            2  2   234557776 676666665788999999988874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.61  E-value=8.2e-06  Score=69.16  Aligned_cols=186  Identities=10%  Similarity=0.011  Sum_probs=115.2

Q ss_pred             CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-e-cCCCEEEEec-----------
Q 023246           14 RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-S-NTSELLISYN-----------   80 (285)
Q Consensus        14 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s-~~~~~l~s~~-----------   80 (285)
                      |+..++++...++.|.+.|+.+.++...+            .+  .....+..+++ + |+++++.++.           
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii------------~i--p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAIL------------EI--PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEE------------EC--SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEE------------eC--CCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence            65445555555677999999988743211            11  11234667787 4 8888776652           


Q ss_pred             --------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC---------
Q 023246           81 --------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---------  143 (285)
Q Consensus        81 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---------  143 (285)
                              ++.+.+.|..+.                +...++.-..+   ...+++ +++++++++.+.+.         
T Consensus       166 ~l~~~~~~~~~vtvID~~t~----------------~v~~qI~Vgg~---pd~~~~-spdGk~~~vt~~~se~~~~i~~~  225 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKW----------------EVAWQVLVSGN---LDNCDA-DYEGKWAFSTSYNSEKGMTLPEM  225 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTT----------------EEEEEEEESSC---CCCEEE-CSSSSEEEEEESCTTCCSSHHHH
T ss_pred             ccccccccCceEEEEECCCC----------------eEEEEEEeCCC---ccceEE-CCCCCEEEEEecCcccCcchhhc
Confidence                    457889998766                45555443222   344665 88888887776432         


Q ss_pred             -----------------------------eEEEEecCC--Cce-EEEEecccccceEeEEcCCCCeEEEE-ecCCcEEEE
Q 023246          144 -----------------------------HLFIWKKKG--GKL-VRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLW  190 (285)
Q Consensus       144 -----------------------------~v~vwd~~~--~~~-~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iw  190 (285)
                                                   .|.+.|..+  ++. +..+.. .....++.++|||++++.+ ..+.+|.++
T Consensus       226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVi  304 (595)
T 1fwx_A          226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVL  304 (595)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred             cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEE
Confidence                                         377777776  444 555543 2356789999999985544 478899999


Q ss_pred             cCCCCC------C-------CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          191 APMPTD------F-------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       191 d~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      |+...+      +       .+.... ....-... ..++...++.--|++|.+||+..
T Consensus       305 d~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF-~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          305 DVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAF-DGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEE-CTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ECcccccccccccCcccceEEEcCCC-CCcceEEE-CCCCeEEEEEecCCcEEEEEhhH
Confidence            987431      1       111111 11112211 22335566778889999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.60  E-value=3.3e-06  Score=74.33  Aligned_cols=201  Identities=11%  Similarity=0.056  Sum_probs=115.9

Q ss_pred             CCcEEEEEccCCcccCCcCCC--CCccccccc------ccCC--------CCCcceEEEEEecCCCEEEEec-CC-----
Q 023246           25 DEYARVYDIRKCHWYSPISSD--TPVDTFCPR------HLIG--------KNNIHITGLAYSNTSELLISYN-DE-----   82 (285)
Q Consensus        25 dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~------~~~~--------~h~~~v~~i~~s~~~~~l~s~~-d~-----   82 (285)
                      +|.|..||..+++.+......  .+...+...      ....        ++......++++|++.+++.+. ++     
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            789999999999865443210  111000000      0000        1111123578888887776653 54     


Q ss_pred             --------------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-------eeeeeEEEecCCCc---EEEE
Q 023246           83 --------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGVNFFGPNDE---YVMS  138 (285)
Q Consensus        83 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~---~l~~  138 (285)
                                    .|..+|..++                +.+-.++.....       ....-... ..+++   .++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG----------------~~~W~~~~~~~d~wd~~~~~~~~l~d~-~~~G~~~~~v~~  324 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTG----------------EYVWHYQTTPGDAWDYTATQHMILAEL-PIDGKPRKVLMQ  324 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTC----------------CEEEEEESSTTCCSCCCCCSCEEEEEE-EETTEEEEEEEE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCC----------------ceeEeeecCCcccccccCCCCcEEEee-ccCCcEEEEEEE
Confidence                          3999999988                555555432110       00111111 22454   7889


Q ss_pred             ecCCCeEEEEecCCCceEEEEeccc-c--------------------------------------cceEeEEcCCCCeEE
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVGDR-H--------------------------------------VVNQLEPHPHIPMFA  179 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~h~-~--------------------------------------~v~~~~~~p~~~~l~  179 (285)
                      ++.+|.++++|.++|+.+....... .                                      .-..++++|+..+++
T Consensus       325 ~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~y  404 (689)
T 1yiq_A          325 APKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVY  404 (689)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred             ECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEE
Confidence            9999999999999999885432110 0                                      011378888877766


Q ss_pred             EEec---------------------------------------------CCcEEEEcCCCCCC-CCCCCCcccceeeccc
Q 023246          180 TCGI---------------------------------------------EKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ  213 (285)
Q Consensus       180 t~~~---------------------------------------------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~  213 (285)
                      +...                                             +|.|..||+.++++ .++..+. ..... ..
T Consensus       405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g-~~  482 (689)
T 1yiq_A          405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGG-TL  482 (689)
T ss_dssp             EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCC-EE
T ss_pred             EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCc-cc
Confidence            5532                                             36788899887763 1221111 11000 01


Q ss_pred             cCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          214 GREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ...+.+++.++.|+.++.||.++++.+-.+.
T Consensus       483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          483 STAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            1234578889999999999999988776553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=2.3e-06  Score=75.12  Aligned_cols=209  Identities=10%  Similarity=0.101  Sum_probs=122.4

Q ss_pred             cEEEEeeC------CCcEEEEEccCCcccCCcCCCCCcc--------------ccc--ccccC-CCCCcceEEEEEecCC
Q 023246           17 NYFAVGGS------DEYARVYDIRKCHWYSPISSDTPVD--------------TFC--PRHLI-GKNNIHITGLAYSNTS   73 (285)
Q Consensus        17 ~~l~tg~~------dg~v~iwd~~~~~~~~~~~~~~~~~--------------~~~--~~~~~-~~h~~~v~~i~~s~~~   73 (285)
                      ..++.++.      ++.|+.||..+++.+..+....+..              .+.  -.... .+.......++++|++
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~  254 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL  254 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT
T ss_pred             CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC
Confidence            35555553      7999999999998664443221110              000  00000 0111122357888888


Q ss_pred             CEEEEec-CC-------------------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-------eeeeeE
Q 023246           74 ELLISYN-DE-------------------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-------QTVKGV  126 (285)
Q Consensus        74 ~~l~s~~-d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~  126 (285)
                      .++..+. ++                   .|..+|..++                +.+-.++.....       ....-+
T Consensus       255 ~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG----------------~~~W~~~~~~~d~wd~~~~~~p~l~  318 (677)
T 1kb0_A          255 NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG----------------KYKWHYQETPGDNWDYTSTQPMILA  318 (677)
T ss_dssp             TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC----------------CEEEEEESSTTCCSCCCCCSCCEEE
T ss_pred             CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC----------------CEEEEEecCCCcccccccCCCcEEE
Confidence            7666543 32                   4888888887                455554432110       001112


Q ss_pred             EEecCCC---cEEEEecCCCeEEEEecCCCceEEEEecccc-----------cc------------------------eE
Q 023246          127 NFFGPND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-----------VV------------------------NQ  168 (285)
Q Consensus       127 ~~~~~~~---~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~-----------~v------------------------~~  168 (285)
                      .. ..+|   ..++.++.+|.++++|..+|+.+..+.....           ++                        ..
T Consensus       319 ~~-~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~  397 (677)
T 1kb0_A          319 DI-KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHP  397 (677)
T ss_dssp             EE-EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSC
T ss_pred             ec-ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCC
Confidence            21 2366   6889999999999999999999876652110           00                        15


Q ss_pred             eEEcCCCCeEEEEecC-------------------------------------------CcEEEEcCCCCCCC-CCCCCc
Q 023246          169 LEPHPHIPMFATCGIE-------------------------------------------KTVKLWAPMPTDFP-PLPDNA  204 (285)
Q Consensus       169 ~~~~p~~~~l~t~~~d-------------------------------------------~~i~iwd~~~~~~~-~~~~~~  204 (285)
                      ++++|+..++++...+                                           +.|..||+.++++. +.. +.
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~  476 (677)
T 1kb0_A          398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HV  476 (677)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ES
T ss_pred             ceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CC
Confidence            7889988887665432                                           67899999877631 221 11


Q ss_pred             ccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          205 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ....... ....+.+++.++.|+.+++||..+++.+..+.
T Consensus       477 ~~~~~g~-~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          477 SPWNGGT-LTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             SSCCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcCcc-eEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            1111100 11234477778999999999999998876664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.59  E-value=2e-05  Score=64.03  Aligned_cols=105  Identities=10%  Similarity=-0.019  Sum_probs=69.6

Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCCCC-cccceee
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDN-AEKIMKA  210 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~-~~~~~~~  210 (285)
                      +..++.++.++.+..+|..+++.+.....  .....+..  ++..+..++.++.+..+|..+++.. ..... .......
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence            45677778899999999999998876653  23344444  3567777888999999999887642 11101 1111001


Q ss_pred             ccccCCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          211 NKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                         ...+..++.++.+|.++++|..+++.+....
T Consensus       315 ---~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          315 ---VLYNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             ---EEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ---EEECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence               0123477888999999999998887665443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.58  E-value=3.6e-06  Score=66.93  Aligned_cols=136  Identities=11%  Similarity=0.072  Sum_probs=82.1

Q ss_pred             CCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           72 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        72 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                      ++.+.+.+.++.|..+|.. +                +....+......  +.++.. .+++. +..++.++.|..+|..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g----------------~~~~~~~~~~~~--~~~~~~-~~~g~-l~vgt~~~~l~~~d~~  165 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-G----------------TEKWRFKTKKAI--YATPIV-SEDGT-IYVGSNDNYLYAINPD  165 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-S----------------CEEEEEECSSCC--CSCCEE-CTTSC-EEEECTTSEEEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCC-C----------------CEEEEEcCCCce--eeeeEE-cCCCE-EEEEcCCCEEEEECCC
Confidence            5555555568889999887 4                343344333322  555654 66666 5557778999999998


Q ss_pred             CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEE
Q 023246          152 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV  231 (285)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~v  231 (285)
                       ++.+..+......+.++...+++..++..   +.|..+|...............+..+.  ...+..+..++.++.+..
T Consensus       166 -g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~~--~~~~g~l~v~t~~~gl~~  239 (330)
T 3hxj_A          166 -GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRPA--ISEDGTIYVTSLDGHLYA  239 (330)
T ss_dssp             -SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCCE--ECTTSCEEEEETTTEEEE
T ss_pred             -CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEECCCCcEEEEEccCCcceeceE--ECCCCeEEEEcCCCeEEE
Confidence             88877776666678888888888765544   788999943322222221111221111  112235666677777877


Q ss_pred             EEe
Q 023246          232 LRL  234 (285)
Q Consensus       232 wd~  234 (285)
                      ++.
T Consensus       240 ~~~  242 (330)
T 3hxj_A          240 INP  242 (330)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            763

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.58  E-value=1.5e-05  Score=70.87  Aligned_cols=193  Identities=10%  Similarity=0.084  Sum_probs=103.6

Q ss_pred             ceeEEEEc-CCCCcEEEEe-eCCC----cEEEEEccCC-cccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE
Q 023246            5 RLNAIVID-PRNPNYFAVG-GSDE----YARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI   77 (285)
Q Consensus         5 ~v~~~~~s-~~~~~~l~tg-~~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~   77 (285)
                      .+...+|| ||+ .+||.+ ..+|    +|+++|+.++ +.+.             ..+    ......+.|+|||+.|+
T Consensus       175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~~----~~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DKV----SGTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CCE----EEECSCCEECSSTTEEE
T ss_pred             EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------ccc----cCceeeEEEecCCCEEE
Confidence            46678999 987 555543 3333    4999999987 5210             000    11134688999998655


Q ss_pred             E-ecC-----CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEE
Q 023246           78 S-YND-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIW  148 (285)
Q Consensus        78 s-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vw  148 (285)
                      . ..+     ..|+++++.++.              ......+..... .....+.+ +|++++|+...   ....|+++
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~--------------~~~~lv~~~~~~-~~~~~~~~-SpDg~~l~~~~~~~~~~~l~~~  300 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQ--------------SEDVCLYEEHNP-LFSAFMYK-AADTNTLCIGSQSPETAEVHLL  300 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCG--------------GGCEEEEECCCT-TCEEEEEE-CTTSSEEEEEEECSSCEEEEEE
T ss_pred             EEEECCCCCCCEEEEEECCCCc--------------hhcEEEEecCCC-ceEEEEEE-CCCCCEEEEEecCCCCceEEEE
Confidence            5 333     357888876541              001123332211 12456775 99999887654   34578899


Q ss_pred             ecCCCc--e-EEEEe-cccccceEeEEcCCCCeEEEEecC--C--cEEEEcCCC-CCCCC-CCCCccc--ceeeccccCC
Q 023246          149 KKKGGK--L-VRLMV-GDRHVVNQLEPHPHIPMFATCGIE--K--TVKLWAPMP-TDFPP-LPDNAEK--IMKANKQGRE  216 (285)
Q Consensus       149 d~~~~~--~-~~~~~-~h~~~v~~~~~~p~~~~l~t~~~d--~--~i~iwd~~~-~~~~~-~~~~~~~--~~~~~~~~~~  216 (285)
                      |+.++.  . +..+. .......++.|+..+.+++....+  +  .|..+++.+ ..... +..+...  +....  ...
T Consensus       301 d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~  378 (751)
T 2xe4_A          301 DLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRS  378 (751)
T ss_dssp             ESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECS
T ss_pred             ECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EEC
Confidence            988752  3 13333 333455555555444344444443  2  566667654 33333 2222221  11121  123


Q ss_pred             CceEEEeCCCCeEEEEE
Q 023246          217 DHSRITLTPDVIMHVLR  233 (285)
Q Consensus       217 ~~~~~~~s~d~~i~vwd  233 (285)
                      +.++++...++..++|-
T Consensus       379 ~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          379 NYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             SEEEEEEEETTEEEEEE
T ss_pred             CEEEEEEEeCCEEEEEE
Confidence            45667777777655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.53  E-value=3.7e-05  Score=61.06  Aligned_cols=169  Identities=12%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccc--cccc---ccCCCCCcceEEEEEec-CCCEEEEe
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT--FCPR---HLIGKNNIHITGLAYSN-TSELLISY   79 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~---~~~~~h~~~v~~i~~s~-~~~~l~s~   79 (285)
                      -.+++|++++ ++++++..++.|..|+..+++.... ........  .+..   .........+..+++.+ +++++++.
T Consensus        21 p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             CCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            4568899975 7788888899999998876542110 00000000  0000   00000123578899997 77777765


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccC---ceeeeeEEEecC-CCcEEEEecC--------------
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN---SQTVKGVNFFGP-NDEYVMSGSD--------------  141 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~-~~~~l~~~~~--------------  141 (285)
                      ..+.|..+|..++                 .+..+.....   ......+++ ++ ++++.++-..              
T Consensus        99 ~~~~i~~~d~~~g-----------------~~~~~~~~~~~~~~~~p~~i~~-d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           99 CYYHLSVVGSEGG-----------------HATQLATSVDGVPFKWLYAVTV-DQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             TTTEEEEECTTCE-----------------ECEEEESEETTEECSCEEEEEE-CTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCC-----------------EEEEecccCCCCcccccceEEE-ecCCCEEEEECCcccccccccceehcc
Confidence            5555888886643                 2222221110   012677887 88 8887776432              


Q ss_pred             ---CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCC
Q 023246          142 ---CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPT  195 (285)
Q Consensus       142 ---dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~  195 (285)
                         ++.|..||..+++...... .......++++|+++.|..+ ...+.|..|++...
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~  217 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP  217 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred             cCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence               4789999987665433222 22456789999999865544 55688999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=6.6e-06  Score=62.49  Aligned_cols=179  Identities=11%  Similarity=0.041  Sum_probs=113.8

Q ss_pred             ceEEEEEecCCCEEEE-ecCC--cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           63 HITGLAYSNTSELLIS-YNDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      -...+.|+ ++.++.+ |.+|  .|+++|+.++                +.+..+...... .-..+.. . .++..+..
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg----------------kv~~~~~l~~~~-FgeGit~-~-g~~ly~lt  103 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG----------------KTLQQIELGKRY-FGEGISD-W-KDKIVGLT  103 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC----------------CEEEEEECCTTC-CEEEEEE-E-TTEEEEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCC----------------cEEEEEecCCcc-ceeEEEE-e-CCEEEEEE
Confidence            45789998 6666555 5554  8999999988                566666543321 1233554 2 23444555


Q ss_pred             cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC--Ccccc---eeeccc
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD--NAEKI---MKANKQ  213 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--~~~~~---~~~~~~  213 (285)
                      -.++.+.+||..+.+.+.++....   ....+++++..|+.+..++.|.++|+.+.++ .++..  ...++   ..+.+ 
T Consensus       104 w~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~-  179 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEW-  179 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE-
T ss_pred             eeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEE-
Confidence            578999999999999999987532   2234445677766666678899999987763 22221  11222   12222 


Q ss_pred             cCCCceEEEeCCCCeEEEEEecccccceeEeeeccc-------------cccCCCCCcCeEEEeec
Q 023246          214 GREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNA-------------ADFESDEEEGETYLLGF  266 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~  266 (285)
                       .++++++..-.+..|.+.|.++++.+..+..+.-.             ..++.+++..++|+.+-
T Consensus       180 -~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          180 -VDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -ETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -ECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             24456666667889999999999888888654211             22445556667777663

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.51  E-value=6.8e-06  Score=62.47  Aligned_cols=178  Identities=7%  Similarity=-0.002  Sum_probs=113.8

Q ss_pred             ceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           63 HITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      -...+.|+. +.++.+ +.++.|+++|+.++                +.+..+ ... ...-..+++ . .++..+..-.
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tg----------------kv~~~~-l~~-~~FgeGit~-~-g~~Ly~ltw~  114 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESA----------------QPVWME-RLG-NIFAEGLAS-D-GERLYQLTWT  114 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCS----------------SCSEEE-ECT-TCCEEEEEE-C-SSCEEEEESS
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCC----------------cEEeEE-CCC-CcceeEEEE-e-CCEEEEEEcc
Confidence            457888874 455555 56888999999988                566665 222 211234654 3 3445555667


Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC--Ccccc---eeeccccC
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD--NAEKI---MKANKQGR  215 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--~~~~~---~~~~~~~~  215 (285)
                      ++.+.+||..+.+.+.++... ..-..++  ++++.|+.+..++.|.++|+.+.++ .++..  ....+   ..+.+.  
T Consensus       115 ~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--  189 (268)
T 3nok_A          115 EGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--  189 (268)
T ss_dssp             SCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred             CCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--
Confidence            999999999999999998753 2223444  5677776666788999999988764 22221  22222   122221  


Q ss_pred             CCceEEEeCCCCeEEEEEecccccceeEeeecc--------------ccccCCCCCcCeEEEeec
Q 023246          216 EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYN--------------AADFESDEEEGETYLLGF  266 (285)
Q Consensus       216 ~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~  266 (285)
                      ++++++....+..|.+.|.++++.+.++..+.-              ...++.+++.+++|+.|-
T Consensus       190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            445566666788999999999988888865421              122455556667777663

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=5.8e-06  Score=72.61  Aligned_cols=54  Identities=9%  Similarity=0.009  Sum_probs=44.4

Q ss_pred             CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          143 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       143 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      |.|..||+.+++.+..+.. ..++....+...+..++.++.|+.+++||.+++++
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence            7899999999999888763 34555566677788888889999999999998874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.48  E-value=8.4e-05  Score=55.93  Aligned_cols=152  Identities=9%  Similarity=0.047  Sum_probs=99.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCC--cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE--ec
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YN   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~~   80 (285)
                      -...+.|++ + .++.+.+.+|  .|+.+|+.+++.......+             . ...--.+++.  +..|..  -.
T Consensus        22 ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-------------~-~~fgeGi~~~--~~~ly~ltw~   83 (243)
T 3mbr_X           22 FTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVP-------------P-PYFGAGIVAW--RDRLIQLTWR   83 (243)
T ss_dssp             CEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECC-------------T-TCCEEEEEEE--TTEEEEEESS
T ss_pred             ccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCC-------------C-CcceeEEEEe--CCEEEEEEee
Confidence            355788887 3 6777777654  8999999999854332111             1 1011233333  443333  35


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++.+.+||..+.                +.+.++.....   -..++   ++++.|+.+..++.|.++|..+.+.+.++.
T Consensus        84 ~~~v~v~D~~tl----------------~~~~ti~~~~~---Gwglt---~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           84 NHEGFVYDLATL----------------TPRARFRYPGE---GWALT---SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             SSEEEEEETTTT----------------EEEEEEECSSC---CCEEE---ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEECCcC----------------cEEEEEeCCCC---ceEEe---eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            999999999887                67777775432   24554   345555555568999999999999988876


Q ss_pred             ccc-----ccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          161 GDR-----HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       161 ~h~-----~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      ...     ..++.+.|. +++.++..-.+..|.+.|++++++
T Consensus       142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV  182 (243)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred             EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence            422     244566665 566666555677999999988764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.45  E-value=0.00018  Score=56.58  Aligned_cols=160  Identities=11%  Similarity=0.080  Sum_probs=103.8

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccC--CCCCcceEEEEE---ecCCCEEEEec-
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI--GKNNIHITGLAY---SNTSELLISYN-   80 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~i~~---s~~~~~l~s~~-   80 (285)
                      .+++|++.++.++++.-..++|..|+...+.....          ....+.  ......+..|.|   .|+++++++.. 
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----------~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----------VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----------CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----------ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            36889886545555555899999999975532110          001100  011224579999   68888777532 


Q ss_pred             -------------CCcEEEEEcC---CCCCCCCCCCCCccccCCCCceEeec--cc---------CceeeeeEEEecCCC
Q 023246           81 -------------DELVYLFEKN---MGLGPSPLSLSPEDLQKREEPQVYSG--HR---------NSQTVKGVNFFGPND  133 (285)
Q Consensus        81 -------------d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~i~~~~~~~~~~  133 (285)
                                   +..|..||+.   ++                +.+.....  ..         .......++. +++|
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg----------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav-D~~G  148 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENS----------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ-DRDG  148 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTC----------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEE-CTTS
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCC----------------CEEEEecCccccccccccccccccCCceeEE-CCCC
Confidence                         5679999988   55                34333321  11         1123788997 9999


Q ss_pred             cEEEEecCC-CeEEEEecCCCceEEEEe-c-----ccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          134 EYVMSGSDC-GHLFIWKKKGGKLVRLMV-G-----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       134 ~~l~~~~~d-g~v~vwd~~~~~~~~~~~-~-----h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      +..++++.. +.|...+... +.+..+. .     .....+.++++|+++.|+.....+.+..+|++.
T Consensus       149 naYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          149 NSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            999998888 8888888763 3333221 1     122367899999999988777799999999873

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.43  E-value=0.00026  Score=56.09  Aligned_cols=204  Identities=7%  Similarity=-0.034  Sum_probs=115.6

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-ecCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-~~d~   82 (285)
                      ...+++|++.++.++++-...+.|..+++......      .     ....+....-.....+++.+.+ +++++ ...+
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~------~-----~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~   99 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG   99 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC------c-----ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCC
Confidence            35688999866566666667789999988752100      0     0011111112345789998755 45555 3588


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEe-ecccCceeeeeEEEecCCCcEEEEec-CC-CeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGS-DC-GHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-g~v~vwd~~~~~~~~~~  159 (285)
                      .|.+++....                 ....+ .....  ....+++ +|.+..++.+. .. +.|..+++. ++....+
T Consensus       100 ~I~~~~~~g~-----------------~~~~~~~~~~~--~P~~iav-dp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~  158 (316)
T 1ijq_A          100 TVSVADTKGV-----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL  158 (316)
T ss_dssp             EEEEEETTSS-----------------SEEEEEECTTC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETT-SCCEEEE
T ss_pred             EEEEEeCCCC-----------------ceEEEEECCCC--CcceEEe-CCCCCEEEEEccCCCCeEEEEcCC-CCCeEEE
Confidence            9999998654                 22222 22222  2678887 87555444433 33 789888886 4444433


Q ss_pred             e-cccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCCCCCC---CcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 V-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 ~-~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      . ..-.....++++|++..|..+. ..+.|..+++.+.....+..   .......+..  ..+.++++-...+.|..++.
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav--~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEET
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEE--ECCEEEEEECCCCeEEEEeC
Confidence            2 2335678999999877655554 56789999987644322210   1111112211  23456667677788888876


Q ss_pred             ccccccee
Q 023246          235 QRRQTLAY  242 (285)
Q Consensus       235 ~~~~~~~~  242 (285)
                      .+++....
T Consensus       237 ~~g~~~~~  244 (316)
T 1ijq_A          237 LTGSDVNL  244 (316)
T ss_dssp             TTCCCCEE
T ss_pred             CCCcceEE
Confidence            55544433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.41  E-value=0.00031  Score=56.50  Aligned_cols=199  Identities=8%  Similarity=-0.091  Sum_probs=113.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~   82 (285)
                      ...+++|++.++.++.+-...+.|..+++......               .+..........+++.+.+. ++++. ..+
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~  138 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS  138 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------EEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCce---------------EEEeCCCCCccEEEEecCCCeEEEEcCCCC
Confidence            35688999866556666667788888888755311               01011123456889997554 54553 478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcE-EEEecCC-CeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEY-VMSGSDC-GHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~-l~~~~~d-g~v~vwd~~~~~~~~~~  159 (285)
                      .|.+.++...                 ....+. ....  ....+++ +|.+.. +++-... +.|..+++........+
T Consensus       139 ~I~~~~~dG~-----------------~~~~l~~~~l~--~P~~iav-dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  198 (349)
T 3v64_C          139 RIEVANLDGA-----------------HRKVLLWQSLE--KPRAIAL-HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA  198 (349)
T ss_dssp             EEEEEETTSC-----------------SCEEEECTTCS--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEESC
T ss_pred             eEEEEcCCCC-----------------ceEEEEeCCCC--CcceEEE-ecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence            8999998754                 223332 2222  2678887 775544 4444444 78999988743332222


Q ss_pred             ecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ...-...+.++++|++..|..+ ...+.|..+++.+.....+. ........+..  ..+.++++-...+.|...+..++
T Consensus       199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCC
Confidence            2223457899999877665544 45678999998765432211 11111111211  23446666666777777764444


Q ss_pred             ccc
Q 023246          238 QTL  240 (285)
Q Consensus       238 ~~~  240 (285)
                      +..
T Consensus       277 ~~~  279 (349)
T 3v64_C          277 KNQ  279 (349)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.37  E-value=0.00016  Score=55.03  Aligned_cols=162  Identities=7%  Similarity=0.062  Sum_probs=99.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .+..++|+|++..++++...++.|...|.. ++....+.             +.+ ......|++.+++.++++. .++.
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------l~g-~~D~EGIa~~~~g~~~vs~E~~~~   92 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------LDF-VKDLETIEYIGDNQFVISDERDYA   92 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-------------CSS-CSSEEEEEECSTTEEEEEETTTTE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-------------cCC-CCChHHeEEeCCCEEEEEECCCCc
Confidence            588999999865677778888889889987 65322111             011 2457788998888877775 4788


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEee----cccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC---CCceE
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLV  156 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~---~~~~~  156 (285)
                      +.++++.....     +        ..+....    .........+++| ++.++.|+++.+.....+|.+.   ....+
T Consensus        93 l~~~~v~~~~~-----i--------~~~~~~~~~~~~~~~N~g~EGLA~-d~~~~~L~va~E~~p~~i~~~~g~~~~~~l  158 (255)
T 3qqz_A           93 IYVISLTPNSE-----V--------KILKKIKIPLQESPTNCGFEGLAY-SRQDHTFWFFKEKNPIEVYKVNGLLSSNEL  158 (255)
T ss_dssp             EEEEEECTTCC-----E--------EEEEEEECCCSSCCCSSCCEEEEE-ETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred             EEEEEcCCCCe-----e--------eeeeeeccccccccccCCcceEEE-eCCCCEEEEEECcCCceEEEEcccccCCce
Confidence            99999875410     0        0011111    0111123688997 8888777666655444444443   12222


Q ss_pred             EEEe-------cccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCC
Q 023246          157 RLMV-------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       157 ~~~~-------~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~  195 (285)
                      ..+.       .+...+.+++++|.... ++.....+.+..+|..+.
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence            2221       12345789999996555 555666778888998765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.37  E-value=8.7e-05  Score=58.91  Aligned_cols=198  Identities=9%  Similarity=0.064  Sum_probs=108.6

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCCEEEEec---
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISYN---   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~s~~---   80 (285)
                      ...+++++++++++++ +...+.|..+|..+++...          +. .............+++.+ +|++.++..   
T Consensus        81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~----------~~-~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~  148 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQ----------LA-TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL  148 (322)
T ss_dssp             CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEE----------EE-SEETTEECSCEEEEEECTTTCCEEEEESCSS
T ss_pred             CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEE----------ec-ccCCCCcccccceEEEecCCCEEEEECCccc
Confidence            4678999973334444 4444557888876543110          00 000001123467899999 998777632   


Q ss_pred             ---------------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe-cCCCe
Q 023246           81 ---------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGH  144 (285)
Q Consensus        81 ---------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~  144 (285)
                                     ++.|..||..++                 ....+.....  ....+++ +++++.++.+ ...+.
T Consensus       149 ~~~~~~~~~~~~~~~~g~v~~~d~~~~-----------------~~~~~~~~~~--~p~gia~-~~dg~~lyv~d~~~~~  208 (322)
T 2fp8_A          149 YDDRGVQQIMDTSDKTGRLIKYDPSTK-----------------ETTLLLKELH--VPGGAEV-SADSSFVLVAEFLSHQ  208 (322)
T ss_dssp             CCTTCHHHHHHHTCCCEEEEEEETTTT-----------------EEEEEEEEES--CCCEEEE-CTTSSEEEEEEGGGTE
T ss_pred             ccccccceehcccCCCceEEEEeCCCC-----------------EEEEeccCCc--cCcceEE-CCCCCEEEEEeCCCCe
Confidence                           267888887654                 2222221111  1567886 9998865544 56789


Q ss_pred             EEEEecCCCc--eEEEEecccccceEeEEcCCCCeEEEEec----------CCcEEEEcCCCCCCCCCCCCc----ccce
Q 023246          145 LFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHIPMFATCGI----------EKTVKLWAPMPTDFPPLPDNA----EKIM  208 (285)
Q Consensus       145 v~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~t~~~----------d~~i~iwd~~~~~~~~~~~~~----~~~~  208 (285)
                      |.+|++....  ....+....+ ...++++++|++.++...          .+.|..++.....+..+....    ..+.
T Consensus       209 I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~  287 (322)
T 2fp8_A          209 IVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFE  287 (322)
T ss_dssp             EEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCC
T ss_pred             EEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccce
Confidence            9999987421  1222211223 788999999987666544          456888887643332221111    1111


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ...  ...+.++++....+.|..+++..+
T Consensus       288 ~~~--~~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          288 QIQ--EHDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEE--EETTEEEEECSSCSEEEEEEC---
T ss_pred             EEE--EeCCEEEEeecCCCceEEEecccc
Confidence            111  123445666666777887776544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=0.00041  Score=56.86  Aligned_cols=206  Identities=8%  Similarity=-0.021  Sum_probs=117.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-~d~   82 (285)
                      .+.+++|++.++.++.+-...+.|+.+++.......           ....+..........+++.+.+ +++++- ..+
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-----------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~  181 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  181 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------C-----------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-----------cceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence            467899998654566665667888888876421000           1111112223467889999854 455553 478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec--CCCeEEEEecCCCceEEEEe
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~vwd~~~~~~~~~~~  160 (285)
                      .|.+.++...                .....+.....  ....+++ +|.+.+|+...  ..+.|...++........+.
T Consensus       182 ~I~~~~~~g~----------------~~~~l~~~~~~--~P~~iav-dp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          182 TVSVADTKGV----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEECTTTC----------------SEEEEEECSSC--CEEEEEE-ETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             eEEEEeCCCC----------------ceEEEEeCCCC--CcceEEE-ecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            8999988754                22222222222  2678887 77655554433  24789999987444333333


Q ss_pred             cccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCCCCCC---CcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ..-...+.|+++|++..|..+. ..+.|..+++.+.....+..   .......+..  ..+.++++-...+.|..++..+
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESSS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcCC
Confidence            3335678999998877766554 56789999987654332211   1111112211  2344666666677788787555


Q ss_pred             ccccee
Q 023246          237 RQTLAY  242 (285)
Q Consensus       237 ~~~~~~  242 (285)
                      ++....
T Consensus       321 G~~~~~  326 (400)
T 3p5b_L          321 GSDVNL  326 (400)
T ss_dssp             CCCCEE
T ss_pred             CCceEE
Confidence            544433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.35  E-value=0.00031  Score=57.35  Aligned_cols=202  Identities=7%  Similarity=-0.088  Sum_probs=115.5

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~   82 (285)
                      ...+++|++.++.++++-...+.|..+++......               .+..........+++.+.+. ++++- ..+
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE---------------EEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE---------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence            45678999865566666667788888888755311               01011122446788987554 44553 477


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEE-EEecCC-CeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYV-MSGSDC-GHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l-~~~~~d-g~v~vwd~~~~~~~~~~  159 (285)
                      .|.+.++...                 ....+. ....  ....+++ +|.+..| ++-... +.|..+++.........
T Consensus       182 ~I~~~~~dg~-----------------~~~~l~~~~l~--~P~giav-dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  241 (386)
T 3v65_B          182 RIEVANLDGA-----------------HRKVLLWQSLE--KPRAIAL-HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA  241 (386)
T ss_dssp             EEEECBTTSC-----------------SCEEEECSSCS--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             eEEEEeCCCC-----------------ceEEeecCCCC--CCcEEEE-EcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence            8888887654                 222222 2222  2678887 7765554 443344 78999998744333333


Q ss_pred             ecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ...-...+.|+++|++..|..+ ...+.|..+++.+.....+.. .......+..  ..+.++++-...+.|..++..++
T Consensus       242 ~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          242 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCC
Confidence            3333457899999876665544 456789999987644322211 1111112211  23446667677777877775444


Q ss_pred             ccceeE
Q 023246          238 QTLAYR  243 (285)
Q Consensus       238 ~~~~~~  243 (285)
                      +....+
T Consensus       320 ~~~~~i  325 (386)
T 3v65_B          320 KNQEII  325 (386)
T ss_dssp             CSCEEE
T ss_pred             cceEEE
Confidence            444333

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.34  E-value=4.9e-05  Score=57.19  Aligned_cols=162  Identities=9%  Similarity=-0.059  Sum_probs=103.1

Q ss_pred             cceEEEEEecCCCEEEE-ecC--CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           62 IHITGLAYSNTSELLIS-YND--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      .-...+.|++ +.++.+ |..  ..|+.+|+.++                +.+......... .--.++. . .++..+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg----------------kv~~~~~l~~~~-fgeGi~~-~-~~~ly~l   80 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG----------------RILQRAEVPPPY-FGAGIVA-W-RDRLIQL   80 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC----------------CEEEEEECCTTC-CEEEEEE-E-TTEEEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCC----------------CEEEEEeCCCCc-ceeEEEE-e-CCEEEEE
Confidence            4577899987 555555 443  58999999988                566666543321 1234454 2 3455555


Q ss_pred             ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCC--Ccccceeeccc-c
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD--NAEKIMKANKQ-G  214 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~~~~~-~  214 (285)
                      .-.++.+.+||..+.+.+.++.... .-..++  +++..|+.+..++.|.++|+.+.++ .++..  +..++..++.. .
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence            6679999999999999999988533 223444  5666666666688999999988763 22221  22222111110 1


Q ss_pred             CCCceEEEeCCCCeEEEEEecccccceeEeee
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQTLAYRERR  246 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~  246 (285)
                      .+++.++..-.+..|.+.|..+++.+..+..+
T Consensus       158 ~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          158 VNGELLANVWLTSRIARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             ETTEEEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred             eCCEEEEEECCCCeEEEEECCCCCEEEEEECC
Confidence            13445555556789999999999888887644

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.33  E-value=6.4e-05  Score=66.16  Aligned_cols=204  Identities=9%  Similarity=0.069  Sum_probs=114.4

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..+++++.++.|.-+|..+++.+............. ...  . ...-..+.. .++.+++.+.|+.|+.+|..++    
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-~~~--~-~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG----  141 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAG-EAC--C-DAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTG----  141 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGG-GCT--T-CSCCCCCEE-ETTEEEEECTTSEEEEEETTTC----
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccc-ccc--c-cCCCCccEE-ECCEEEEEccCCEEEEEECCCC----
Confidence            467778888999999999998655443322111000 000  0 000011122 2344444456999999999988    


Q ss_pred             CCCCCCccccCCCCceEeecccCceeeeeEEEecC---CCcEEEEec-----CCCeEEEEecCCCceEEEEecc--c---
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---NDEYVMSGS-----DCGHLFIWKKKGGKLVRLMVGD--R---  163 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~-----~dg~v~vwd~~~~~~~~~~~~h--~---  163 (285)
                                  +.+-.+...........+.. +|   ++..++..+     .+|.|+.||.++|+.+..+...  .   
T Consensus       142 ------------~~~W~~~~~~~~~~~~~~~~-sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~  208 (689)
T 1yiq_A          142 ------------QRAWSVDTRADHKRSYTITG-APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKL  208 (689)
T ss_dssp             ------------CEEEEEECCSCTTSCCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred             ------------CEeeeecCcCCCCCCccccC-CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccc
Confidence                        45544443200000011110 12   444443322     3789999999999998877521  0   


Q ss_pred             --------------------------ccceEeEEcCCCCeEEEEecCCc-------------------EEEEcCCCCCCC
Q 023246          164 --------------------------HVVNQLEPHPHIPMFATCGIEKT-------------------VKLWAPMPTDFP  198 (285)
Q Consensus       164 --------------------------~~v~~~~~~p~~~~l~t~~~d~~-------------------i~iwd~~~~~~~  198 (285)
                                                .....++++|+...++.+..++.                   |..+|+++++..
T Consensus       209 ~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~  288 (689)
T 1yiq_A          209 PPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV  288 (689)
T ss_dssp             CCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE
T ss_pred             ccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee
Confidence                                      01125788888888888877753                   999999888741


Q ss_pred             ---CCCCCc-------ccceeec--cccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246          199 ---PLPDNA-------EKIMKAN--KQGREDHSRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       199 ---~~~~~~-------~~~~~~~--~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                         +...+.       ...+...  ........++.++.+|.++++|..+++.+..
T Consensus       289 W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          289 WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence               111111       1111110  0000123688899999999999998877643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.29  E-value=0.00012  Score=64.15  Aligned_cols=73  Identities=10%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             EEEEcCCCCcEEEEeeCCC-----------cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246            8 AIVIDPRNPNYFAVGGSDE-----------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL   76 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l   76 (285)
                      ++++.|.++.+++.|+.+.           .+.+||..+++....            ......+.....++++..+++++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~~~~~~~~~~g~ly  257 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMFCPGISMDGNGQIV  257 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCSSCEEEECTTSCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC------------cccCCCCCCccccccCCCCCCEE
Confidence            4566762347888887543           588899988764211            11111222334457788899988


Q ss_pred             EEec--CCcEEEEEcCCC
Q 023246           77 ISYN--DELVYLFEKNMG   92 (285)
Q Consensus        77 ~s~~--d~~i~iwd~~~~   92 (285)
                      +.|.  +..+.+||..+.
T Consensus       258 v~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          258 VTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             EECSSSTTCEEEEEGGGT
T ss_pred             EeCCCCCCceEEecCcCC
Confidence            8753  668999998765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.29  E-value=0.00043  Score=54.87  Aligned_cols=201  Identities=9%  Similarity=-0.040  Sum_probs=115.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEEe-cCCc
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDEL   83 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s~-~d~~   83 (285)
                      ..+++|++.++.++.+-...+.|..+++......              ..+....-.....+++.+.+ .++++- ..+.
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~--------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~  102 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNR  102 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC--------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce--------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCE
Confidence            4578888865456666666788888887754210              00001112245678998755 455553 4788


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEec--CCCeEEEEecCCCceEEEEe
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~vwd~~~~~~~~~~~  160 (285)
                      |.++++...                 ....+. ....  ....+++ +|.+.+++.+.  ..+.|...++..........
T Consensus       103 I~~~~~dG~-----------------~~~~l~~~~~~--~P~giav-dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  162 (318)
T 3sov_A          103 IEVSNLDGS-----------------LRKVLFWQELD--QPRAIAL-DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN  162 (318)
T ss_dssp             EEEEETTSC-----------------SCEEEECSSCS--SEEEEEE-EGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEECCCC-----------------cEEEEEeCCCC--CccEEEE-eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence            999998754                 223332 2222  2678887 77655554443  36789998887433322222


Q ss_pred             cccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          161 GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ..-...+.|+++|++..|..+ ...+.|..+++.+.....+.. .......+..  ..+.++++-...+.|..++..+++
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav--~~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE--ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE--eCCEEEEEecCCCeEEEEECCCCC
Confidence            223456899999977665554 456789999987644322211 1111112211  234466676677888888876555


Q ss_pred             ccee
Q 023246          239 TLAY  242 (285)
Q Consensus       239 ~~~~  242 (285)
                      ....
T Consensus       241 ~~~~  244 (318)
T 3sov_A          241 GLRE  244 (318)
T ss_dssp             SCEE
T ss_pred             ceEE
Confidence            4433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.28  E-value=0.00089  Score=53.80  Aligned_cols=186  Identities=10%  Similarity=-0.006  Sum_probs=106.0

Q ss_pred             ceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEe
Q 023246           63 HITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSG  139 (285)
Q Consensus        63 ~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~  139 (285)
                      .+..++|++... ++.+. ..+.|..+++...                .....+.....  ....+++ ++ .+++.++-
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~----------------~~~~~~~~~~~--~p~glav-d~~~g~ly~~d  134 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGS----------------NVEEVVSTGLE--SPGGLAV-DWVHDKLYWTD  134 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC----------------SCEEEECSSCS--CCCEEEE-ETTTTEEEEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCC----------------CceEEEeCCCC--CccEEEE-ecCCCeEEEEc
Confidence            478999997665 44453 4788999998765                22222222212  2567886 65 45555666


Q ss_pred             cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecC-CcEEEEcCCCCCCCCCCC-CcccceeeccccCC
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIE-KTVKLWAPMPTDFPPLPD-NAEKIMKANKQGRE  216 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~  216 (285)
                      ...+.|.+.++........+...-.....++++|.+.. +++-... +.|...++.+.....+.. .......+......
T Consensus       135 ~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~  214 (349)
T 3v64_C          135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  214 (349)
T ss_dssp             TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred             CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence            67789999998754443333333456789999996655 4444444 788888887654333211 11222223222234


Q ss_pred             CceEEEeCCCCeEEEEEecccccceeEeee-ccccccCCCCCcCeEEEeecCCC
Q 023246          217 DHSRITLTPDVIMHVLRLQRRQTLAYRERR-YNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       217 ~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ..++++-+..+.|..+++........+... .....++.  +++.+|+.+...+
T Consensus       215 ~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~  266 (349)
T 3v64_C          215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTK  266 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTT
T ss_pred             CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCCC
Confidence            556677777788888887654332222111 01112222  2345777766554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.26  E-value=8.1e-05  Score=63.19  Aligned_cols=150  Identities=9%  Similarity=0.021  Sum_probs=96.2

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCC--Cccccc-----ccccC-------------CC----CCcceEEEEEec-
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDT--PVDTFC-----PRHLI-------------GK----NNIHITGLAYSN-   71 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~-----~~~~~-------------~~----h~~~v~~i~~s~-   71 (285)
                      ..|.+|+..|.++|+-+.+++.+..+....  +...+-     .+.+.             .+    ..+.......|. 
T Consensus        16 ~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t   95 (595)
T 1fwx_A           16 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   95 (595)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEE
T ss_pred             EEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCC
Confidence            357889999999999999998765544211  111110     00000             00    011122244444 


Q ss_pred             ----CCCEEEEe-c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEec-CCCcEEEEec----
Q 023246           72 ----TSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-PNDEYVMSGS----  140 (285)
Q Consensus        72 ----~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~----  140 (285)
                          ||+++... . +..|.+.|+.+.                +....+.-... .....+++.. |+++++++++    
T Consensus        96 ~g~~DG~~lfVnd~~~~rVavIdl~t~----------------~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~  158 (595)
T 1fwx_A           96 EGKYDGRFLFMNDKANTRVARVRCDVM----------------KCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDET  158 (595)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTT----------------EEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCE
T ss_pred             CCCcCCCEEEEEcCCCCEEEEEECCCc----------------eEeeEEeCCCC-CCCcceeeeecCCCcEEEEeccccc
Confidence                77776664 3 778999999887                55554432211 2266777535 8999998884    


Q ss_pred             --------------CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC
Q 023246          141 --------------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE  184 (285)
Q Consensus       141 --------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d  184 (285)
                                    .++.+.+.|..+.+.+.++..-. ....++++|+++++++.+.+
T Consensus       159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~  215 (595)
T 1fwx_A          159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYN  215 (595)
T ss_dssp             ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESC
T ss_pred             ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecC
Confidence                          35689999999999888887433 56778899999997777744

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.21  E-value=0.00062  Score=53.55  Aligned_cols=223  Identities=11%  Similarity=0.006  Sum_probs=118.5

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--CC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--DE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--d~   82 (285)
                      ....++|+|++ +++++-..++.|..||......             ....    ....+..+++.++|+++++..  ++
T Consensus        33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-------------~~~~----~~~~p~gia~~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-------------IHAT----VEGKVSGLAFTSNGDLVATGWNADS   94 (306)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-------------EEEE----CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-------------EEEe----CCCCceeEEEcCCCcEEEEeccCCc
Confidence            35678999975 7777766788999998764321             0001    123588999999999777642  22


Q ss_pred             -cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce-EEEEe
Q 023246           83 -LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VRLMV  160 (285)
Q Consensus        83 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~  160 (285)
                       .|..++..++                +. ..+...........++. .+.+..+++-...+.|+++|..+++. +....
T Consensus        95 ~~v~~~d~~~g----------------~~-~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~  156 (306)
T 2p4o_A           95 IPVVSLVKSDG----------------TV-ETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH  156 (306)
T ss_dssp             CEEEEEECTTS----------------CE-EEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEcCCCC----------------eE-EEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence             4666776655                22 22221111112345554 45555556555688999999875432 22111


Q ss_pred             c---------ccccceEeEEcCCCCeEE-EEecCCcEEEEcCCC-CCCCCCC--CCcccceeeccccCCCceEEEeCCCC
Q 023246          161 G---------DRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMP-TDFPPLP--DNAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       161 ~---------h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      .         .-...+.+  +|+++.|. +-...+.|..+++.. +.+....  ......-.+ ....++.++++-...+
T Consensus       157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi-~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDF-AFDVEGNLYGATHIYN  233 (306)
T ss_dssp             GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSE-EEBTTCCEEEECBTTC
T ss_pred             CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCe-EECCCCCEEEEeCCCC
Confidence            1         11223445  78887654 445677899999864 3221100  000000000 0122344666666677


Q ss_pred             eEEEEEeccccccee--Eeee-ccccccCCC---CCcCeEEEeecC
Q 023246          228 IMHVLRLQRRQTLAY--RERR-YNAADFESD---EEEGETYLLGFS  267 (285)
Q Consensus       228 ~i~vwd~~~~~~~~~--~~~~-~~~~~~~~~---~~~~~v~~~~~~  267 (285)
                      .|.+++.. ++....  +... .....++..   ++.+.+|+....
T Consensus       234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            88888754 322111  1111 112334443   455679988764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.19  E-value=0.0016  Score=53.09  Aligned_cols=158  Identities=8%  Similarity=-0.043  Sum_probs=94.3

Q ss_pred             cceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEE
Q 023246           62 IHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMS  138 (285)
Q Consensus        62 ~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~  138 (285)
                      ..+..++|.+.+. ++.+. ..+.|..+++...                 ....+..... .....+++ ++ .+++.++
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~-----------------~~~~~~~~~~-~~p~glav-d~~~g~lY~~  176 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGS-----------------NVEEVVSTGL-ESPGGLAV-DWVHDKLYWT  176 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----------------CEEEEECSSC-SCCCCEEE-ETTTTEEEEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCC-----------------CcEEEEeCCC-CCccEEEE-EeCCCeEEEE
Confidence            3578999997655 45553 4788999998764                 2222221111 12567886 65 4555566


Q ss_pred             ecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-cC-CcEEEEcCCCCCCCCCC-CCcccceeeccccC
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IE-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQGR  215 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~  215 (285)
                      -...+.|.+.++........+.........++++|.+..|..+. .. +.|...++.+.....+. ........+.....
T Consensus       177 d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~  256 (386)
T 3v65_B          177 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA  256 (386)
T ss_dssp             ETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGG
T ss_pred             cCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCC
Confidence            66678999999875444433443345678999999766544443 44 67888888765432221 11111222222223


Q ss_pred             CCceEEEeCCCCeEEEEEecccc
Q 023246          216 EDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       216 ~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ...++++-+..+.|..+++....
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG~~  279 (386)
T 3v65_B          257 GRRMYWVDAKHHVIERANLDGSH  279 (386)
T ss_dssp             GTEEEEEETTTTEEEEECTTSCS
T ss_pred             CCEEEEEECCCCEEEEEeCCCCe
Confidence            44566777777888888876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.18  E-value=0.00026  Score=60.92  Aligned_cols=113  Identities=11%  Similarity=-0.054  Sum_probs=71.9

Q ss_pred             CCCc---EEEEecCCCeEEEEecCCCceEEEEeccc-------------ccc--------------------------eE
Q 023246          131 PNDE---YVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVV--------------------------NQ  168 (285)
Q Consensus       131 ~~~~---~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~  168 (285)
                      .+++   .++.++.+|.++++|..+|+.+.......             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            3664   56778899999999999999887664211             111                          24


Q ss_pred             eEEcCCCCeEEEEe-------------------------------------cCCcEEEEcCCCCCC-CCCCCCcccceee
Q 023246          169 LEPHPHIPMFATCG-------------------------------------IEKTVKLWAPMPTDF-PPLPDNAEKIMKA  210 (285)
Q Consensus       169 ~~~~p~~~~l~t~~-------------------------------------~d~~i~iwd~~~~~~-~~~~~~~~~~~~~  210 (285)
                      ++++|+..++....                                     .++.|..||+.++++ .++. ........
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~~~~~~~  469 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EKFAAWGG  469 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ESSCCCSB
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CCCCccce
Confidence            67888777765543                                     246888899887764 2221 11111100


Q ss_pred             ccccCCCceEEEeCCCCeEEEEEecccccceeEee
Q 023246          211 NKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER  245 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~  245 (285)
                       .....+..++.++.|+.|+.||.++++.+-.+..
T Consensus       470 -~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          470 -TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             -CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             -eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence             0011234677789999999999999887766543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.13  E-value=1.5e-05  Score=64.37  Aligned_cols=127  Identities=6%  Similarity=-0.163  Sum_probs=90.3

Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec----------CCCeEEEEecCC
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKG  152 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~v~vwd~~~  152 (285)
                      +|.++|..+.                +.+.++.....   - .+.+ +|++++++.+.          .++.|.+||+.+
T Consensus        47 ~vsvID~~t~----------------~v~~~i~vG~~---P-~i~~-spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T  105 (368)
T 1mda_H           47 ENWVSCAGCG----------------VTLGHSLGAFL---S-LAVA-GHSGSDFALASTSFARSAKGKRTDYVEVFDPVT  105 (368)
T ss_dssp             EEEEEETTTT----------------EEEEEEEECTT---C-EEEE-CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred             eEEEEECCCC----------------eEEEEEeCCCC---C-ceEE-CCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            8889999887                67777765443   2 6887 99999988875          478999999999


Q ss_pred             CceEEEEecc-------cccceEeEEcCCCCeEEEEec--CCcEEE--EcCCCCCCCCCCCCcccceeeccccCCCceEE
Q 023246          153 GKLVRLMVGD-------RHVVNQLEPHPHIPMFATCGI--EKTVKL--WAPMPTDFPPLPDNAEKIMKANKQGREDHSRI  221 (285)
Q Consensus       153 ~~~~~~~~~h-------~~~v~~~~~~p~~~~l~t~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (285)
                      ++.+.++..+       ......++++|++++++.+..  +..+.+  +|+.+  +..+.....  ..+  .....+.++
T Consensus       106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~--~~~--~p~g~~~~~  179 (368)
T 1mda_H          106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASC--FHI--HPGAAATHY  179 (368)
T ss_dssp             CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSC--CCC--EEEETTEEE
T ss_pred             CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCc--eEE--ccCCCeEEE
Confidence            9999998643       134678999999999888874  457888  99866  222211000  001  112234567


Q ss_pred             EeCCCCeEEEEEecc
Q 023246          222 TLTPDVIMHVLRLQR  236 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~  236 (285)
                      +.+.|+.+.+.++..
T Consensus       180 ~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          180 LGSCPASLAASDLAA  194 (368)
T ss_dssp             CCCCTTSCEEEECCS
T ss_pred             EEcCCCCEEEEECcc
Confidence            778888888888776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.11  E-value=3.5e-05  Score=67.89  Aligned_cols=206  Identities=7%  Similarity=-0.039  Sum_probs=111.4

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC-CEEEE-ecCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~s-~~d~   82 (285)
                      .+.+++|++.++.++++-...+.|+.+++......      .     ....++.........|++.+.+ +++++ ...+
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------~-----~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~  475 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  475 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------C-----CCCCBCCSCC--CCCEECCCSSSBCEECCTTTS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------c-----ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCC
Confidence            35678998865445555556688888888751100      0     0001111111234567887544 55555 3578


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC--CCeEEEEecCCCceEEEEe
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~  160 (285)
                      .|.++++...                 ....+.... ......+++ +|.+.+|+.+..  .+.|.++++........+.
T Consensus       476 ~I~v~d~dg~-----------------~~~~l~~~~-~~~P~giav-Dp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          476 TVSVADTKGV-----------------KRKTLFREQ-GSKPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             CEEEEBSSSC-----------------CEEEECCCS-SCCCCCEEC-CSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             eEEEEecCCC-----------------ceEEEEeCC-CCCcceEEE-ccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            8999998654                 223332111 112567886 776555544432  3788888876332222222


Q ss_pred             cccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCCCCCCCC---cccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPPLPDN---AEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ..-...+.|+|+|++..| ++-...+.|..+++.+.....+...   ......+..  ....++++-...+.|..++..+
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEEECSTTTCEEEEETTT
T ss_pred             CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEEEeCCCCeEEEEEccC
Confidence            223456789999976654 4444667899999876443222111   111111111  1235666777778888888665


Q ss_pred             ccccee
Q 023246          237 RQTLAY  242 (285)
Q Consensus       237 ~~~~~~  242 (285)
                      ++.+..
T Consensus       615 G~~~~~  620 (699)
T 1n7d_A          615 GSDVNL  620 (699)
T ss_dssp             EEEEEC
T ss_pred             CCceEE
Confidence            544433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.09  E-value=0.002  Score=57.79  Aligned_cols=203  Identities=13%  Similarity=0.115  Sum_probs=120.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      +...|.++...+++  .|-.|+.++-|..|+..+..........         ....-....|.++...++|.+.+...+
T Consensus       308 ~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~---------~~~~l~~~~V~~i~~d~~g~lWiGt~~  376 (795)
T 4a2l_A          308 SQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNIP---------YKNSLSDNVVSCIVEDKDKNLWIGTND  376 (795)
T ss_dssp             SSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCCT---------TSSSCSCSSEEEEEECTTSCEEEEESS
T ss_pred             CCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCCC---------CCCCCCCCeeEEEEECCCCCEEEEECC
Confidence            34678899998865  4556777788899987655421110000         000112456999999999988777777


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-------cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCc
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-------RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                      +-|..|+..++                 ....+...       -....|.++.. +++++.+..|+.++-|..||..+++
T Consensus       377 ~Gl~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          377 GGLNLYNPITQ-----------------RFTSYTLQEDESARGIGSNNIKAVYV-DEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             SCEEEECTTTC-----------------CEEEECCC------CCSCSCEEEEEE-ETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             CCeEEEcCCCC-----------------cEEEEecCCCCcccCCCCccEEEEEE-cCCCCEEEEEeCcCceeEEeCCCCc
Confidence            77999988654                 22222110       01123888886 7888845567776779999988776


Q ss_pred             eEEEEe----cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC-------CcccceeeccccCCCceEEEe
Q 023246          155 LVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-------NAEKIMKANKQGREDHSRITL  223 (285)
Q Consensus       155 ~~~~~~----~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  223 (285)
                      ......    .+...|.++...+++.+.+... + -+..|+..++....+..       ....+..+. ....+.+.+ +
T Consensus       439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~d~~g~lWi-g  514 (795)
T 4a2l_A          439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF-RDSHKRLWI-G  514 (795)
T ss_dssp             EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE-ECTTCCEEE-E
T ss_pred             EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEE-ECCCCCEEE-E
Confidence            443221    1245788999888887655443 4 48888887665322211       112232322 122333444 4


Q ss_pred             CCCCeEEEEEecccc
Q 023246          224 TPDVIMHVLRLQRRQ  238 (285)
Q Consensus       224 s~d~~i~vwd~~~~~  238 (285)
                      +. +-+..|+..+..
T Consensus       515 t~-~Gl~~~~~~~~~  528 (795)
T 4a2l_A          515 GE-EGLSVFKQEGLD  528 (795)
T ss_dssp             ES-SCEEEEEEETTE
T ss_pred             eC-CceEEEeCCCCe
Confidence            44 557888876543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.08  E-value=0.0023  Score=57.05  Aligned_cols=204  Identities=8%  Similarity=-0.036  Sum_probs=115.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~   82 (285)
                      .+.+++|++.+..++++-...+.|+.+++.......           ....++.........|++.+.+. ++++- ..+
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-----------~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~  493 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG  493 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-----------ceeEEEecCCCCcceeeeeecCCcEEEEecCCC
Confidence            456788888654566666667788888876431100           00111122234567899998775 44443 488


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEec-C-CCeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS-D-CGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~-~-dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.+.++...                 ....+. ....  ....|++ +|...+|+... . .+.|.+.++........+
T Consensus       494 ~I~v~~ldG~-----------------~~~~l~~~~l~--~P~gIaV-Dp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          494 TVSVADTKGV-----------------KRKTLFRENGS--KPRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             EEEEEETTSS-----------------SEEEEEECTTC--CEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             eEEEEeCCCC-----------------eEEEEEeCCCC--CcceEEE-ecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            9999998754                 333332 2222  2788997 77655554433 2 378999998744443333


Q ss_pred             ecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCCCCCC---CcccceeeccccCCCceEEEeCCCCeEEEEEec
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ...-.....|++++.+..|..+. ....|...++.+.....+..   .....+.+..  ..+.++++-...+.|...+..
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCC
Confidence            33335788999998777665554 45688999987665433211   1111122211  233456666666777777755


Q ss_pred             ccccce
Q 023246          236 RRQTLA  241 (285)
Q Consensus       236 ~~~~~~  241 (285)
                      +++.+.
T Consensus       632 tG~~~~  637 (791)
T 3m0c_C          632 TGSDVN  637 (791)
T ss_dssp             TCCCCE
T ss_pred             CCcceE
Confidence            554433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.04  E-value=0.0027  Score=50.25  Aligned_cols=180  Identities=9%  Similarity=-0.046  Sum_probs=103.4

Q ss_pred             CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCC
Q 023246           25 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSP  102 (285)
Q Consensus        25 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~  102 (285)
                      ...|+..++......              ..+.......+.++.|.+.+. ++.+- ..+.|..++....          
T Consensus        12 ~~~I~~i~l~~~~~~--------------~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~----------   67 (318)
T 3sov_A           12 RRDLRLVDATNGKEN--------------ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT----------   67 (318)
T ss_dssp             EEEEEEEETTCTTSC--------------CEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS----------
T ss_pred             cCeEEEEECCCCceE--------------EEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCC----------
Confidence            467888888755310              000011123567899998654 55553 4788999998764          


Q ss_pred             ccccCCCCc-eEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEE
Q 023246          103 EDLQKREEP-QVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       103 ~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t  180 (285)
                            ... ..+...-..  ...+++ ++ .+++.++-...+.|.++++........+.........++++|.+..|..
T Consensus        68 ------~~~~~~~~~~l~~--p~glav-d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           68 ------ESVQNVVVSGLLS--PDGLAC-DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             ------SCCCEEEEECCSC--CCEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred             ------CceEEEEcCCCCC--ccEEEE-EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence                  111 122221112  567886 65 5556666667789999998754433333334456789999987655444


Q ss_pred             Ee--cCCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          181 CG--IEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       181 ~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.  ..+.|...++.+.....+. ........+........++++-+..+.|..+++...
T Consensus       139 td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~  198 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  198 (318)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence            44  3577888887754432221 111112222222234456667677788888887653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.01  E-value=0.0039  Score=55.88  Aligned_cols=202  Identities=7%  Similarity=0.045  Sum_probs=118.4

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      ...|.++...+++ . |..|+.+ -|.+||..+++.........        ....-....|.++...++|.+-++..++
T Consensus       262 ~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~--------~~~~l~~~~i~~i~~D~~g~lWigt~~~  330 (795)
T 4a2l_A          262 SNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPV--------ENGSLSQRSVRSIFMDSQGGMWLGTYFG  330 (795)
T ss_dssp             CSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTT--------STTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred             CCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCC--------CCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence            4568899988865 4 4445555 58889987665321110000        0001234579999999999987777777


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-----cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      -|..|+....                 ....+...     -....|.++.. ++++++.+ |+.++-|..|+..+++...
T Consensus       331 Gl~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~V~~i~~-d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~  391 (795)
T 4a2l_A          331 GLNYYHPIRN-----------------RFKNIRNIPYKNSLSDNVVSCIVE-DKDKNLWI-GTNDGGLNLYNPITQRFTS  391 (795)
T ss_dssp             CEEEECGGGG-----------------SSEEECCCTTSSSCSCSSEEEEEE-CTTSCEEE-EESSSCEEEECTTTCCEEE
T ss_pred             CeEEeCCCcc-----------------cceEEcCCCCCCCCCCCeeEEEEE-CCCCCEEE-EECCCCeEEEcCCCCcEEE
Confidence            7888887654                 12222110     01123888885 77776554 6667779999988765443


Q ss_pred             EEec--------ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC-----CcccceeeccccCCCceEEEeC
Q 023246          158 LMVG--------DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-----NAEKIMKANKQGREDHSRITLT  224 (285)
Q Consensus       158 ~~~~--------h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s  224 (285)
                      ....        ....|.++...++++.|..|..++-|..|+..++....+..     ....+..+.. ...+.+.+ ++
T Consensus       392 ~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~lwi-gt  469 (795)
T 4a2l_A          392 YTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILP-DGEGNLWL-GT  469 (795)
T ss_dssp             ECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE-CSSSCEEE-EE
T ss_pred             EecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE-CCCCCEEE-Ee
Confidence            2211        13568899988888845556666679999988765433221     1222333322 22333333 44


Q ss_pred             CCCeEEEEEeccc
Q 023246          225 PDVIMHVLRLQRR  237 (285)
Q Consensus       225 ~d~~i~vwd~~~~  237 (285)
                      . +-+..|+..++
T Consensus       470 ~-~Gl~~~~~~~~  481 (795)
T 4a2l_A          470 L-SALVRFNPEQR  481 (795)
T ss_dssp             S-SCEEEEETTTT
T ss_pred             c-CceeEEeCCCC
Confidence            4 45777876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.00  E-value=0.00047  Score=61.38  Aligned_cols=117  Identities=9%  Similarity=-0.012  Sum_probs=74.4

Q ss_pred             CCCCc-ceEEEEEe-cCCCEEEEec--C----CcEEEEEcCCC-CCCCCCCCCCccccCCCCceEeecccCceeeeeEEE
Q 023246           58 GKNNI-HITGLAYS-NTSELLISYN--D----ELVYLFEKNMG-LGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF  128 (285)
Q Consensus        58 ~~h~~-~v~~i~~s-~~~~~l~s~~--d----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  128 (285)
                      .+|.. .+...+|| |||++|+-+.  +    .+|+++|+.++ .               .....+..     ....+.|
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~---------------~l~~~~~~-----~~~~~~W  228 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ---------------TIADKVSG-----TNGEIVW  228 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC---------------CCCCCEEE-----ECSCCEE
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE---------------eCCccccC-----ceeeEEE
Confidence            34443 67889999 9999777532  2    24999999765 2               11111111     1345664


Q ss_pred             ecCCCcEEEEecCC-----CeEEEEecCCCce--EEEEe-cccccceEeEEcCCCCeEEEEec---CCcEEEEcCCCC
Q 023246          129 FGPNDEYVMSGSDC-----GHLFIWKKKGGKL--VRLMV-GDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPT  195 (285)
Q Consensus       129 ~~~~~~~l~~~~~d-----g~v~vwd~~~~~~--~~~~~-~h~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~  195 (285)
                       +|+++.|+....+     ..|+++++.+++.  ...+. .+......+.|+|++++|+..+.   ...|.++|+.++
T Consensus       229 -spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          229 -GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             -CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             -ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence             9999877766554     3688888877642  22332 22234567899999999776553   346888888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.00  E-value=0.0042  Score=50.84  Aligned_cols=184  Identities=11%  Similarity=0.012  Sum_probs=105.3

Q ss_pred             CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCC
Q 023246           25 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSP  102 (285)
Q Consensus        25 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~  102 (285)
                      ...|+..++......               .+ ......+..++|++.+. ++.+. ..+.|+.+++.....        
T Consensus        91 ~~~I~~i~l~~~~~~---------------~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~--------  146 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYT---------------SL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------  146 (400)
T ss_dssp             TTEEEEECTTSCSCE---------------EE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------
T ss_pred             cceeEEEccCCccee---------------Ee-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC--------
Confidence            467888887755311               11 12244678999998665 44453 478899998865200        


Q ss_pred             ccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEE
Q 023246          103 EDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC  181 (285)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~  181 (285)
                          .......+.....  ....+++ ++ .+++.++-...+.|.+.++........+.........|+++|.+..|...
T Consensus       147 ----~~~~~~~~~~~~~--~p~glav-D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          147 ----VSSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             -----CCCEEEECSSCS--CEEEEEE-ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEE
T ss_pred             ----CCcceEEEeCCCC--CcccEEE-EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEE
Confidence                0011122221222  2677887 65 56666666778899999998555444444344567899999976655444


Q ss_pred             e-c-CCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          182 G-I-EKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       182 ~-~-d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      . . .+.|...++.+.....+. ........+.......+++++-+....|..+|+.....
T Consensus       220 d~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  280 (400)
T ss_dssp             ECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred             eCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence            3 2 367888888765432221 11112222222223445666667778888888765433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=0.00075  Score=55.90  Aligned_cols=153  Identities=13%  Similarity=0.179  Sum_probs=93.4

Q ss_pred             eeEEEEcC-CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEec-CC
Q 023246            6 LNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DE   82 (285)
Q Consensus         6 v~~~~~s~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~~-d~   82 (285)
                      -..++++| ++ ..|+.+...+.|+.+|+..+...               .+ .........++|+++++ ++++.. ++
T Consensus       139 P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~---------------~~-~~~~~~P~~ia~d~~G~~lyvad~~~~  201 (430)
T 3tc9_A          139 AVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS---------------TV-YSGLSKVRTICWTHEADSMIITNDQNN  201 (430)
T ss_dssp             CCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE---------------EE-ECCCSCEEEEEECTTSSEEEEEECCSC
T ss_pred             CCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE---------------EE-ecCCCCcceEEEeCCCCEEEEEeCCCC
Confidence            45789998 34 34444444488888998765421               11 11234678999999998 445532 22


Q ss_pred             ----cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEE
Q 023246           83 ----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        83 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                          .+.+++.....               .....+....   ....+++ +| ++.++++-...+.|+.++...+....
T Consensus       202 ~~~~~v~~~~~~g~~---------------~~~~~l~~~~---~p~giav-dp~~g~lyv~d~~~~~V~~~~~~~~~~~~  262 (430)
T 3tc9_A          202 NDRPNNYILTRESGF---------------KVITELTKGQ---NCNGAET-HPINGELYFNSWNAGQVFRYDFTTQETTP  262 (430)
T ss_dssp             TTSEEEEEEEGGGTS---------------CSEEEEEECS---SCCCEEE-CTTTCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCce---------------eeeeeeccCC---CceEEEE-eCCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence                34444443220               1112332221   2567886 88 77777777778999999998665422


Q ss_pred             EEec-ccccceEeEEcCCCCe-EEEEecCCcEEEEcCCC
Q 023246          158 LMVG-DRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP  194 (285)
Q Consensus       158 ~~~~-h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~  194 (285)
                      .... .......++|+|++++ +++-...+.|..++...
T Consensus       263 ~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          263 LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            2221 2245778999999995 44445677899987653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.97  E-value=0.00069  Score=58.38  Aligned_cols=133  Identities=12%  Similarity=0.083  Sum_probs=78.7

Q ss_pred             CCC---cEEEEecCCCeEEEEecCCCceEEEEeccc-------------cc-----------------------------
Q 023246          131 PND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HV-----------------------------  165 (285)
Q Consensus       131 ~~~---~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-------------~~-----------------------------  165 (285)
                      .++   ..++.++.+|.++++|.++|+.+.......             .+                             
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            456   378889999999999999999987665321             00                             


Q ss_pred             ---ceEeEEcCCCCeEEEEe---------------------------------cCCcEEEEcCCCCCCC-CCCCCcccce
Q 023246          166 ---VNQLEPHPHIPMFATCG---------------------------------IEKTVKLWAPMPTDFP-PLPDNAEKIM  208 (285)
Q Consensus       166 ---v~~~~~~p~~~~l~t~~---------------------------------~d~~i~iwd~~~~~~~-~~~~~~~~~~  208 (285)
                         -..++++|+...+....                                 .+|.|..||+.++++. +.... ....
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~  489 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLW  489 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCc
Confidence               01346677655544432                                 2578889999887642 21111 0110


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEecccccceeEeeecccccc-CCCCCcCeEEEee
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADF-ESDEEEGETYLLG  265 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~  265 (285)
                      .. .....+.+++.++.|+.++.||.++++.+-.+........- ...+.+|+.|+.-
T Consensus       490 ~g-~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~  546 (582)
T 1flg_A          490 AG-VLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             SC-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cc-ceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEE
Confidence            00 00112447777999999999999999887665432211111 1112456677664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.96  E-value=0.0075  Score=52.43  Aligned_cols=183  Identities=9%  Similarity=-0.074  Sum_probs=106.1

Q ss_pred             CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEEe-cCCcEEEEEcCCCCCCCCCCCC
Q 023246           24 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISY-NDELVYLFEKNMGLGPSPLSLS  101 (285)
Q Consensus        24 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~  101 (285)
                      ..+.|+..++.+....              ..+....-..+..++|++.+.. +.+. .++.|..+++...         
T Consensus        13 ~~~~I~~i~l~~~~~~--------------~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------   69 (628)
T 4a0p_A           13 RRADIRRISLETNNNN--------------VAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------   69 (628)
T ss_dssp             ETTEEEEEESSCTTCE--------------EECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------
T ss_pred             eCCcEEEEECCCCCcc--------------eEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------
Confidence            5678999999755311              1111112345789999997654 4443 4889999988754         


Q ss_pred             CccccCCCCceEeecccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEE
Q 023246          102 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t  180 (285)
                             .....+.....  ....+++ ++. +++.++-...+.|.+.++........+...-.....++++|....|..
T Consensus        70 -------~~~~v~~~g~~--~P~GlAv-D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~  139 (628)
T 4a0p_A           70 -------ALEHVVEFGLD--YPEGMAV-DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW  139 (628)
T ss_dssp             -------SCEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred             -------CcEEEEeCCCC--CcceEEE-EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEE
Confidence                   22222222212  2667887 654 555566666789999998754433333233456789999996555444


Q ss_pred             Ee--cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          181 CG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       181 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ..  ..+.|...++.+.....+.........+.......+++++-...+.|...++.....
T Consensus       140 tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             eCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            43  356788788776554322211222222222222345666667778888888765433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.96  E-value=0.0012  Score=54.70  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             eeEEEEcCC--CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC--
Q 023246            6 LNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND--   81 (285)
Q Consensus         6 v~~~~~s~~--~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d--   81 (285)
                      -..++|+|+  ++++++ +...+.|+.+|..+++..               .+ .........++|+++|+++++...  
T Consensus       141 P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~---------------~~-~~~~~~P~giavd~dG~lyVad~~~~  203 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVD---------------IK-TTNIGQCADVNFTLNGDMVVVDDQSS  203 (433)
T ss_dssp             CCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEE---------------EE-CCCCSCEEEEEECTTCCEEEEECCSC
T ss_pred             CceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEE---------------Ee-ecCCCCccEEEECCCCCEEEEcCCCC
Confidence            457899984  334444 443389999998776521               11 112345889999999996666432  


Q ss_pred             --C-cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEE
Q 023246           82 --E-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        82 --~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                        . .+...+.....               .....+.. ..  ....+++ ++ ++.+.++-..++.|+.+|..++....
T Consensus       204 ~~~~gv~~~~~~~~~---------------~~~~~~~~-~~--~P~giav-d~~~G~lyv~d~~~~~V~~~d~~~g~~~~  264 (433)
T 4hw6_A          204 DTNTGIYLFTRASGF---------------TERLSLCN-AR--GAKTCAV-HPQNGKIYYTRYHHAMISSYDPATGTLTE  264 (433)
T ss_dssp             TTSEEEEEECGGGTT---------------CCEEEEEE-CS--SBCCCEE-CTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred             cccceEEEEECCCCe---------------eccccccc-cC--CCCEEEE-eCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence              1 23333332210               10112221 11  1566776 88 67777776778899999998777633


Q ss_pred             EEec--ccccceEeEEcCCCCeE-EEEecCCcEEEEcCC
Q 023246          158 LMVG--DRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPM  193 (285)
Q Consensus       158 ~~~~--h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~  193 (285)
                      .+..  ....-..++|+|++++| ++-...+.|+.+++.
T Consensus       265 ~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          265 EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            3321  12223469999999954 444556789997765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.93  E-value=0.0044  Score=48.94  Aligned_cols=181  Identities=11%  Similarity=0.020  Sum_probs=101.5

Q ss_pred             CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCCc
Q 023246           26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPE  103 (285)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~  103 (285)
                      ..|+..|+.+.+..              ..+  .....+..++|++.+. ++.+. ..+.|..+++.....         
T Consensus        10 ~~I~~i~~~~~~~~--------------~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~---------   64 (316)
T 1ijq_A           10 HEVRKMTLDRSEYT--------------SLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---------   64 (316)
T ss_dssp             SSEEEEETTSCCCE--------------EEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             CeEEEEECCCcceE--------------ehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC---------
Confidence            57888998866421              111  1234578999998765 44554 478999999875100         


Q ss_pred             cccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe
Q 023246          104 DLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                         .......+.....  ....+++ ++ .+++.++-...+.|.++++........+.........++++|.+..|..+.
T Consensus        65 ---~~~~~~~~~~~~~--~p~glav-d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           65 ---VSSYDTVISRDIQ--APDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             ------CEEEECSSCS--CCCEEEE-ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             ---CcccEEEEeCCCC--CcCEEEE-eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence               0011112221111  2567886 65 455556666788999999874433333333345678999999666544444


Q ss_pred             c-C-CcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          183 I-E-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       183 ~-d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      . . +.|...++.+.....+. ........+.......+++++-+..+.|..+|+...
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            3 3 67888887654322211 111112222222234456667777788999988653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.93  E-value=0.0018  Score=55.86  Aligned_cols=134  Identities=12%  Similarity=0.081  Sum_probs=77.8

Q ss_pred             CCC---cEEEEecCCCeEEEEecCCCceEEEEeccc-------------ccc--------------------------eE
Q 023246          131 PND---EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-------------HVV--------------------------NQ  168 (285)
Q Consensus       131 ~~~---~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~  168 (285)
                      .++   ..++.++.+|.++++|.++|+.+.......             .++                          ..
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  397 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH  397 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence            467   567778999999999999999987654211             011                          24


Q ss_pred             eEEcCCCCeEEEEe---------------------------------------cCCcEEEEcCCCCCCC-CCCCCcccce
Q 023246          169 LEPHPHIPMFATCG---------------------------------------IEKTVKLWAPMPTDFP-PLPDNAEKIM  208 (285)
Q Consensus       169 ~~~~p~~~~l~t~~---------------------------------------~d~~i~iwd~~~~~~~-~~~~~~~~~~  208 (285)
                      ++++|+..++....                                       .+|.|..||+.++++. +.. ...+..
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~  476 (599)
T 1w6s_A          398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVW  476 (599)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCC
T ss_pred             ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCcc
Confidence            56777665544321                                       3467888888777631 111 000000


Q ss_pred             eeccccCCCceEEEeCCCCeEEEEEecccccceeEeeecccccc-CCCCCcCeEEEeec
Q 023246          209 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADF-ESDEEEGETYLLGF  266 (285)
Q Consensus       209 ~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  266 (285)
                      .- .....+.+++.++.|+.++.||.++++.+-.+........- ...+.+|++|+.-.
T Consensus       477 ~g-~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          477 GG-TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             SB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             Cc-ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence            00 00112446777999999999999999877665432211111 11134567777643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.92  E-value=0.00075  Score=59.24  Aligned_cols=202  Identities=10%  Similarity=0.057  Sum_probs=113.7

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS   96 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~   96 (285)
                      ..+++++.++.|.-+|..+++.+.......+..... ... ...  .-..+++. ++..++.+.|+.|..+|..++    
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~-~~~-~~~--~~~~~~~~-~~~v~v~~~dg~l~alD~~tG----  137 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR-TSC-CDA--VNRGVALW-GDKVYVGTLDGRLIALDAKTG----  137 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG-GCT-TCS--CCCCCEEE-BTEEEEECTTSEEEEEETTTC----
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccc-ccc-ccC--CccceEEE-CCEEEEEcCCCEEEEEECCCC----
Confidence            467777888999999999998655443322211000 000 000  00112221 344444456999999999888    


Q ss_pred             CCCCCCccccCCCCceEeecccCc--eeeee-EEEecCCCcEEEEecC------CCeEEEEecCCCceEEEEeccc-c--
Q 023246           97 PLSLSPEDLQKREEPQVYSGHRNS--QTVKG-VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMVGDR-H--  164 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~-~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~h~-~--  164 (285)
                                  +.+-.+......  ..+.+ ...  .++ .++.+..      +|.|+.+|.++|+.+..+.... .  
T Consensus       138 ------------~~~W~~~~~~~~~~~~~~~~P~v--~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~  202 (668)
T 1kv9_A          138 ------------KAIWSQQTTDPAKPYSITGAPRV--VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPA  202 (668)
T ss_dssp             ------------CEEEEEECSCTTSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred             ------------CEeeeeccCCCCCcceecCCCEE--ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCC
Confidence                        455444432110  00111 111  134 4444433      5899999999999998775210 0  


Q ss_pred             ----------------------------cceEeEEcCCCCeEEEEecCC-------------------cEEEEcCCCCCC
Q 023246          165 ----------------------------VVNQLEPHPHIPMFATCGIEK-------------------TVKLWAPMPTDF  197 (285)
Q Consensus       165 ----------------------------~v~~~~~~p~~~~l~t~~~d~-------------------~i~iwd~~~~~~  197 (285)
                                                  ....++++|....++.+..++                   .|..+|++++++
T Consensus       203 ~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~  282 (668)
T 1kv9_A          203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL  282 (668)
T ss_dssp             SCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred             ccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce
Confidence                                        112467888888877777665                   388999988874


Q ss_pred             C---CCCCCc-------ccceeeccccCCC---ceEEEeCCCCeEEEEEecccccceeE
Q 023246          198 P---PLPDNA-------EKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       198 ~---~~~~~~-------~~~~~~~~~~~~~---~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .   +...+.       .+.+.... ..++   ..++.++.+|.++++|..+++.+...
T Consensus       283 ~W~~~~~~~~~wd~~~~~~~~~~d~-~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          283 AWHYQVTPGDSWDFTATQQITLAEL-NIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEESSTTCCSCCCCCSCEEEEEE-EETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeEeecCCCccccccCCCCcEEEEe-ccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            1   121111       11111100 0112   26888999999999999988776443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0035  Score=56.13  Aligned_cols=198  Identities=8%  Similarity=0.003  Sum_probs=113.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      ...|.++...+++  .|..|+.++-|..|+..+++....          ...  .......|.++...+++.+.+...++
T Consensus       362 ~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~----------~~~--~~~~~~~v~~i~~d~~g~lWigt~~~  427 (781)
T 3v9f_A          362 NKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYN----------KEN--RELLSNSVLCSLKDSEGNLWFGTYLG  427 (781)
T ss_dssp             SSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----------------CCCSBEEEEEECTTSCEEEEETTE
T ss_pred             CcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEc----------cCC--CCCCCcceEEEEECCCCCEEEEeccC
Confidence            4568888888864  455667667788899875542111          000  01234579999998888887766667


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      -|..++..++                 ....+.. ......|.++.. ++++++.+.. . +-|..+|..+++.......
T Consensus       428 Gl~~~~~~~~-----------------~~~~~~~~~~~~~~v~~i~~-d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~  487 (781)
T 3v9f_A          428 NISYYNTRLK-----------------KFQIIELEKNELLDVRVFYE-DKNKKIWIGT-H-AGVFVIDLASKKVIHHYDT  487 (781)
T ss_dssp             EEEEECSSSC-----------------EEEECCSTTTCCCCEEEEEE-CTTSEEEEEE-T-TEEEEEESSSSSCCEEECT
T ss_pred             CEEEEcCCCC-----------------cEEEeccCCCCCCeEEEEEE-CCCCCEEEEE-C-CceEEEeCCCCeEEecccC
Confidence            7888887654                 2222221 011123888875 7777765544 3 5688999887665433222


Q ss_pred             c-----cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC----CcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          162 D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD----NAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       162 h-----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      .     ...|.++...+++.+.+.....| +..|+.....+..+..    ....+..+. ....+. +..++.+|.+..|
T Consensus       488 ~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~-lWi~T~~Glv~~~  564 (781)
T 3v9f_A          488 SNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFCSNTINQIY-RSSKGQ-MWLATGEGLVCFP  564 (781)
T ss_dssp             TTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCSCSCEEEEE-ECTTSC-EEEEETTEEEEES
T ss_pred             cccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCCCCeeEEEE-ECCCCC-EEEEECCCceEEE
Confidence            2     35788999998887655433344 7778887654322211    112222222 122333 3344446654777


Q ss_pred             Eeccc
Q 023246          233 RLQRR  237 (285)
Q Consensus       233 d~~~~  237 (285)
                      |..+.
T Consensus       565 d~~~~  569 (781)
T 3v9f_A          565 SARNF  569 (781)
T ss_dssp             CTTTC
T ss_pred             CCCCC
Confidence            76554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.89  E-value=0.01  Score=51.62  Aligned_cols=198  Identities=9%  Similarity=-0.037  Sum_probs=116.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~   82 (285)
                      ...+++|++.++.++.+-..++.|+.+++......               .+...-......+++.+.+. ++++- ..+
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~---------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~  102 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALE---------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTN  102 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------EEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE---------------EEEeCCCCCcceEEEEeCCCEEEEEECCCC
Confidence            45689999976566666667888888888644211               11111123466889987665 44553 478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEec--CCCeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.+.++...                 ....+. ..-  ....++++ +|...+|+...  ..+.|...++...... .+
T Consensus       103 ~I~v~~~dG~-----------------~~~~l~~~~l--~~P~~iav-dp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l  161 (628)
T 4a0p_A          103 RIEVSKLDGQ-----------------HRQVLVWKDL--DSPRALAL-DPAEGFMYWTEWGGKPKIDRAAMDGSERT-TL  161 (628)
T ss_dssp             EEEEEETTST-----------------TCEEEECSSC--CCEEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCE-EE
T ss_pred             EEEEEecCCC-----------------cEEEEEeCCC--CCcccEEE-ccCCCeEEEeCCCCCCEEEEEeCCCCceE-EE
Confidence            8999998754                 223332 222  22678887 77544444433  3578888888744433 33


Q ss_pred             ecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ...-.....|++++++..|..+. ..+.|...++.+.....+.........+..  ..+.++++-...+.|...|..+++
T Consensus       162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav--~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEE--ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEE--ECCEEEEecCCCCEEEEEECCCCC
Confidence            33445678999999877655554 567899999876543222111111122211  124455666667777777755554


Q ss_pred             cc
Q 023246          239 TL  240 (285)
Q Consensus       239 ~~  240 (285)
                      ..
T Consensus       240 ~~  241 (628)
T 4a0p_A          240 NR  241 (628)
T ss_dssp             SC
T ss_pred             ce
Confidence            33

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.85  E-value=0.00068  Score=59.48  Aligned_cols=55  Identities=9%  Similarity=-0.013  Sum_probs=42.9

Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      +|.|..||+.+++.+.....+ ..+....+...+.+++.++.|+.++.||.+++++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            488999999999998877643 3344444555677888899999999999988774

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.85  E-value=0.0051  Score=46.83  Aligned_cols=166  Identities=9%  Similarity=0.087  Sum_probs=97.7

Q ss_pred             CCCCcceEEEEEecCCCEEEE-e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE
Q 023246           58 GKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      .+-...+..++|+|++..|.+ . .++.|...|.. +                +.++.+.-... ...-.+++ .+++.+
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g----------------~v~~~i~l~g~-~D~EGIa~-~~~g~~   83 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G----------------DLIRTIPLDFV-KDLETIEY-IGDNQF   83 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C----------------CEEEEEECSSC-SSEEEEEE-CSTTEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C----------------CEEEEEecCCC-CChHHeEE-eCCCEE
Confidence            344557999999998764444 4 48889999987 4                45555532110 12677887 788888


Q ss_pred             EEEecCCCeEEEEecCCCce---EEEEe------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC----CCCCCCC
Q 023246          136 VMSGSDCGHLFIWKKKGGKL---VRLMV------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT----DFPPLPD  202 (285)
Q Consensus       136 l~~~~~dg~v~vwd~~~~~~---~~~~~------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~----~~~~~~~  202 (285)
                      +++.-.++.+.++++.....   +....      ..+.....|+|+|.++.|.++.+.....+|..+..    .+..+..
T Consensus        84 ~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~  163 (255)
T 3qqz_A           84 VISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD  163 (255)
T ss_dssp             EEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred             EEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc
Confidence            77766778999998765432   22221      12345689999999988777776555555555421    1100000


Q ss_pred             -------CcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          203 -------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       203 -------~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                             .....-.+......+.+++....+..+.++|.+.. .+..+
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~  210 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEM  210 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEE
T ss_pred             hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEE
Confidence                   00011111112223456666677788888885543 44443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=0.0014  Score=54.92  Aligned_cols=162  Identities=15%  Similarity=0.235  Sum_probs=93.1

Q ss_pred             eeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEE-------ecCCC-EE
Q 023246            6 LNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-------SNTSE-LL   76 (285)
Q Consensus         6 v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-------s~~~~-~l   76 (285)
                      -..|+|+|. +.+++++-...+.|++.|+..+.+....            ............|+|       +++++ ++
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~------------~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly  208 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL------------NINTIPTNRIRSIAFNKKIEGYADEAEYMI  208 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE------------CCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE------------ccCccccCCCcEEEEeecccccCCCCCEEE
Confidence            457899983 4456665555577888888876532111            010112346889999       99998 44


Q ss_pred             EEec-CC------cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEE
Q 023246           77 ISYN-DE------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        77 ~s~~-d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vw  148 (285)
                      ++.. ++      .|.+++.....     .     +........+....   ....+++ +| ++.++++-...+.|+.+
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G-----~-----~~~~~~~~~v~~~~---~p~giav-dp~~g~LYvtd~~~g~V~r~  274 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADG-----T-----FDDRSDIQLIAAYK---QCNGATI-HPINGELYFNSYEKGQVFRL  274 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTS-----C-----CSTTSCEEEEEEES---CCCCEEE-CTTTCCEEEEETTTTEEEEE
T ss_pred             EEeCCCCCcccCceEEEEecCCCC-----c-----eeecccceeeccCC---CceEEEE-cCCCCeEEEEECCCCEEEEE
Confidence            4433 31      26666643310     0     00000002222222   1456776 77 56666777788999999


Q ss_pred             ecC-------CCce-----------EEEE-e-cccccceEeEEcCCCCeEE-EEecCCcEEEEcCC
Q 023246          149 KKK-------GGKL-----------VRLM-V-GDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPM  193 (285)
Q Consensus       149 d~~-------~~~~-----------~~~~-~-~h~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~  193 (285)
                      |+.       ++..           ...+ . ........++|+|++++|. +-.....|+.+++.
T Consensus       275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            987       5543           2222 1 2234567899999999644 44456788886653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.82  E-value=0.013  Score=50.86  Aligned_cols=199  Identities=9%  Similarity=-0.040  Sum_probs=111.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-~d~   82 (285)
                      ...+++|++.++.++.+=...+.|..+++.....              ...+...--.....+++.+.+. ++++. ..+
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--------------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~  106 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETN  106 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--------------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCC
Confidence            3568899986645555555567788888764320              0111111224678999999665 44553 488


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEEec--CCCeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.+.++...                 ....+. ..-.  ...++++ +|.+.+|+...  ..+.|...++.........
T Consensus       107 ~I~v~~~dG~-----------------~~~~l~~~~l~--~P~~Iav-dp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~  166 (619)
T 3s94_A          107 RIEVSNLDGS-----------------LRKVLFWQELD--QPRAIAL-DPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  166 (619)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSSCS--CCCCEEE-ETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             EEEEEECCCC-----------------CEEEEEeCCCC--CCceEEE-ecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence            9999998764                 333333 2222  2678887 77654444433  3467887887643333333


Q ss_pred             ecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ...-...+.|++++++..|..+. ..+.|...++.+.....+.. .......+..  ..+.++++-...+.|...|..++
T Consensus       167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~--~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEE--SSSEEEEECTTTCSEEEEESSSC
T ss_pred             eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEE--eCCEEEEecCCCCEEEEEECCCC
Confidence            33345678999999766655554 56789999987654332211 1111112211  22345666666777888876655


Q ss_pred             cc
Q 023246          238 QT  239 (285)
Q Consensus       238 ~~  239 (285)
                      +.
T Consensus       245 ~~  246 (619)
T 3s94_A          245 EG  246 (619)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.014  Score=52.31  Aligned_cols=209  Identities=9%  Similarity=-0.015  Sum_probs=114.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccc-cccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF-CPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      ...|.++...+++  .|..|+..+-|.++|..+++.......  ....+ .......-....|.++...++|.+-++..+
T Consensus       257 ~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQI--RFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTS--EEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBS
T ss_pred             CceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeecc--ccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecC
Confidence            4568888888864  555677656788899876653211000  00000 000000123457999999999987776667


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec--------ccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG--------HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  153 (285)
                      +-|..++....                 ....+..        .-....|.++.. ++++++. .|+.++-|..|+..++
T Consensus       333 ~Gl~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~v~~i~~-d~~g~lW-igt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          333 GGINFISNAPP-----------------TFHTWSYSPTQMNESSLSNKVVSSVCD-DGQGKLW-IGTDGGGINVFENGKR  393 (781)
T ss_dssp             SCEEEECSSCC-----------------SCEEEC----CCCSSCCSSSCEEEEEE-CTTSCEE-EEEBSSCEEEEETTEE
T ss_pred             CeEEEeCCCCC-----------------cceeeccCccccccCCCCCcceEEEEE-cCCCCEE-EEeCCCcEEEEECCCC
Confidence            77888887654                 2222211        001123888875 7777655 4565666888887654


Q ss_pred             ceEEEE---ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC---CcccceeeccccCCCceEEEeCCCC
Q 023246          154 KLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD---NAEKIMKANKQGREDHSRITLTPDV  227 (285)
Q Consensus       154 ~~~~~~---~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~d~  227 (285)
                      +.....   ......|.++...+++.+.+ |..++-+..++..+++...+..   ....+..+.. ...+ .+..++. +
T Consensus       394 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~g-~lwigt~-~  469 (781)
T 3v9f_A          394 VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYE-DKNK-KIWIGTH-A  469 (781)
T ss_dssp             EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE-CTTS-EEEEEET-T
T ss_pred             eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE-CCCC-CEEEEEC-C
Confidence            322111   11235788998888877654 5555668889887665433321   1223333321 2223 3444444 5


Q ss_pred             eEEEEEecccc
Q 023246          228 IMHVLRLQRRQ  238 (285)
Q Consensus       228 ~i~vwd~~~~~  238 (285)
                      -|..++..+.+
T Consensus       470 Gl~~~~~~~~~  480 (781)
T 3v9f_A          470 GVFVIDLASKK  480 (781)
T ss_dssp             EEEEEESSSSS
T ss_pred             ceEEEeCCCCe
Confidence            68888876543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.79  E-value=0.00082  Score=59.24  Aligned_cols=160  Identities=11%  Similarity=-0.008  Sum_probs=89.1

Q ss_pred             ceEEEEEecCCCEEEEe--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecC-CCcEEEEe
Q 023246           63 HITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSG  139 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~  139 (285)
                      .+..++|.+.+..|..+  ..+.|+.+++......            ......+....  .....+++ ++ .++++++-
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------------~~~~~~i~~~~--~~P~glav-D~~~g~LY~tD  471 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------SSYDTVISRDI--QAPDGLAV-DWIHSNIYWTD  471 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------------CCCCCBCCSCC----CCCEEC-CCSSSBCEECC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------------cceEEEEeCCC--CCcceEEE-EeeCCcEEEEe
Confidence            45678999876655443  4788999998751000            01111111111  11456776 64 45555555


Q ss_pred             cCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-cC-CcEEEEcCCCCCCCCCC-CCcccceeeccccCC
Q 023246          140 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IE-KTVKLWAPMPTDFPPLP-DNAEKIMKANKQGRE  216 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~  216 (285)
                      ...+.|.++++........+.........++++|.+.+|+.+. .. +.|..+++.+.....+. ........+.+....
T Consensus       472 ~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS  551 (699)
T ss_dssp             TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTT
T ss_pred             ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccC
Confidence            6678999999875444333333335678899999766544443 22 67888887654432221 111112222222234


Q ss_pred             CceEEEeCCCCeEEEEEeccc
Q 023246          217 DHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       217 ~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      .+++++-+..+.|.++++...
T Consensus       552 ~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          552 GRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCEEEEETTTTEEEEECSSSS
T ss_pred             CEEEEEecCCCeEEEEccCCC
Confidence            556677777788999888654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.76  E-value=0.019  Score=51.31  Aligned_cols=164  Identities=11%  Similarity=-0.022  Sum_probs=92.4

Q ss_pred             CcceEEEEEecCCC-EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCC-cEEE
Q 023246           61 NIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVM  137 (285)
Q Consensus        61 ~~~v~~i~~s~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~  137 (285)
                      ...+..++|.+... ++++. ..+.|+.+++.....            .......+.....  ....|++ ++.+ ++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------------~~~~~~vi~~~l~--~P~GLAv-D~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYDTVISRDIQ--APDGLAV-DWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CEEEECSSCS--CCCEEEE-ETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------------CcceeEEEecCCC--Ccceeee-eecCCcEEE
Confidence            34678899998654 44553 478899888864300            0011222221222  2677887 6655 5556


Q ss_pred             EecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-c-CCcEEEEcCCCCCCCCCCC-Ccccceeecccc
Q 023246          138 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-I-EKTVKLWAPMPTDFPPLPD-NAEKIMKANKQG  214 (285)
Q Consensus       138 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~  214 (285)
                      +-...+.|.+.++........+.........|+++|.+.+|.... . .+.|...++.+.....+.. .......+....
T Consensus       488 tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~  567 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL  567 (791)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred             EecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence            666788999999985443333333445688999999765554443 2 3678888887654322211 111222222222


Q ss_pred             CCCceEEEeCCCCeEEEEEeccccc
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                      ...+++++-.....|...++.....
T Consensus       568 ~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          568 LSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCce
Confidence            3345566666667888888765444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.50  E-value=0.0075  Score=51.86  Aligned_cols=56  Identities=7%  Similarity=-0.088  Sum_probs=41.2

Q ss_pred             CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          141 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       141 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      .+|.|..||+.+++.+.++... ..+....+...+..++.++.|+.|+.+|.+++++
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence            3589999999999998877632 2333333333456777789999999999988874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.46  E-value=0.025  Score=44.28  Aligned_cols=152  Identities=11%  Similarity=0.095  Sum_probs=89.2

Q ss_pred             cceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246           62 IHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                      .....++|+++++++++. .++.|..||....                 ....+.. .  .....+++ +++++++++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------~~~~~~~-~--~~p~gia~-~~dG~l~vad~   90 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------QQIHATV-E--GKVSGLAF-TSNGDLVATGW   90 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------EEEEEEC-S--SEEEEEEE-CTTSCEEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------eEEEEeC-C--CCceeEEE-cCCCcEEEEec
Confidence            457789999999977775 5889999987643                 2222222 2  23788987 89998766653


Q ss_pred             C-C-CeEEEEecCCCceEEEEec-ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC--CC---------CCCCCccc
Q 023246          141 D-C-GHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FP---------PLPDNAEK  206 (285)
Q Consensus       141 ~-d-g~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~---------~~~~~~~~  206 (285)
                      . + ..|..+|..+++....... .......++..+.+..+++-..++.|..+|...+.  +.         ........
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            3 2 3577788777775433221 12233455555555445555467888888876431  10         00000011


Q ss_pred             ceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          207 IMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       207 ~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ...+  ......++++-+..+.|..+++..
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            1111  111234667777889999999875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.43  E-value=0.01  Score=51.17  Aligned_cols=55  Identities=13%  Similarity=-0.087  Sum_probs=40.3

Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      +|.|..||+.+++.+.+...+. ++..-.....+..++.++.|+.++.||.+++++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            6889999999999987776432 222222222466777799999999999988874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.43  E-value=0.041  Score=47.54  Aligned_cols=204  Identities=12%  Similarity=0.004  Sum_probs=112.0

Q ss_pred             cEEEEeeC-CCcEEEEEc-cCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec-CCC----EEEEecCCcEEEEEc
Q 023246           17 NYFAVGGS-DEYARVYDI-RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSE----LLISYNDELVYLFEK   89 (285)
Q Consensus        17 ~~l~tg~~-dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~----~l~s~~d~~i~iwd~   89 (285)
                      ..+++++. ++.|.-+|. .+++.+...............   .. ......++++| ++.    +++...|+.|.-+|.
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~---~~-~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa  138 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVA---CC-DLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA  138 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGC---SS-CSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccc---cc-cccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence            35666666 899999999 888865444332211100000   00 00011244543 333    444456999999999


Q ss_pred             CCCCCCCCCCCCCccccCCCCceEeecccC--ceeeee-EEEecCCCcEEEEec------CCCeEEEEecCCCceEEEEe
Q 023246           90 NMGLGPSPLSLSPEDLQKREEPQVYSGHRN--SQTVKG-VNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~-~~~~~~~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~  160 (285)
                      .++                +.+-.......  ...+.+ ...  .++ .++.++      .+|.|+.+|.++|+.+..+.
T Consensus       139 ~TG----------------~~~W~~~~~~~~~~~~~~ssP~v--~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          139 ETG----------------ETVWKVENSDIKVGSTLTIAPYV--VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             TTC----------------CEEEEEECCCGGGTCBCCSCCEE--ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCC----------------CEEEeecCCCCCccceeecCCEE--ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            888                44443332110  001211 111  134 444544      38999999999999998776


Q ss_pred             cccccc--------------------------------------eEeEEcCCCCeEEEEecC----------------Cc
Q 023246          161 GDRHVV--------------------------------------NQLEPHPHIPMFATCGIE----------------KT  186 (285)
Q Consensus       161 ~h~~~v--------------------------------------~~~~~~p~~~~l~t~~~d----------------~~  186 (285)
                      ......                                      ..+++.+...++..+..+                ..
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s  279 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence            322110                                      134566666676666544                37


Q ss_pred             EEEEcCCCCCCC---CCCCC--------cccceeeccccCCC---ceEEEeCCCCeEEEEEecccccceeEe
Q 023246          187 VKLWAPMPTDFP---PLPDN--------AEKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       187 i~iwd~~~~~~~---~~~~~--------~~~~~~~~~~~~~~---~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      |..+|++++++.   +...|        ..+++... ...++   ..++.++.+|.++++|..+++.+....
T Consensus       280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCCceeeEeecCCCccccccCCCccEEEec-cccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            888898887641   12112        11222110 00122   367778999999999998887765544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.39  E-value=0.057  Score=46.88  Aligned_cols=181  Identities=10%  Similarity=-0.033  Sum_probs=98.0

Q ss_pred             CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE-EEe-cCCcEEEEEcCCCCCCCCCCCC
Q 023246           24 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLGPSPLSLS  101 (285)
Q Consensus        24 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~  101 (285)
                      ....|+..++.....              ...+.......+..++|++.+..| .+- ..+.|..+++...         
T Consensus        16 ~~~~I~~i~~~~~~~--------------~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~---------   72 (619)
T 3s94_A           16 NRRDLRLVDATNGKE--------------NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---------   72 (619)
T ss_dssp             CSSBEEEECCC-----------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------
T ss_pred             ccccEEEEeCCCCcc--------------eEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC---------
Confidence            357888888875420              001111223357899999866644 443 4788988888654         


Q ss_pred             CccccCCCCce-EeecccCceeeeeEEEecC-CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEE
Q 023246          102 PEDLQKREEPQ-VYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA  179 (285)
Q Consensus       102 ~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  179 (285)
                             .... .+......  ...+++ ++ .+++.++-...+.|.+.++........+...-.....|+++|.+.+|.
T Consensus        73 -------~~~~~v~~~~~~~--P~GlAv-D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly  142 (619)
T 3s94_A           73 -------ESVQNVVVSGLLS--PDGLAC-DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY  142 (619)
T ss_dssp             ---------CEEEECSSCSC--EEEEEE-ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             -------CceEEEEeCCCCC--cCeEEE-EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEE
Confidence                   1112 22222122  778887 77 455556666789999999985443333334445688999999755544


Q ss_pred             EEe--cCCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          180 TCG--IEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       180 t~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ...  ..+.|...++.+.....+. ........+.......+++++-...+.|...++...
T Consensus       143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          143 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             EeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            443  2456776777655432221 111111222222223445666666677777777653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.27  E-value=0.03  Score=44.38  Aligned_cols=153  Identities=12%  Similarity=0.155  Sum_probs=86.4

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCc
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      ..+.++++.|++ .+++.+...+..+-+|- .++..            ....  ......+..+.+.+++.+++.+.+|.
T Consensus       163 ~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~-gG~tW------------~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~  226 (327)
T 2xbg_A          163 GVMRNLNRSPSG-EYVAVSSRGSFYSTWEP-GQTAW------------EPHN--RTTSRRLHNMGFTPDGRLWMIVNGGK  226 (327)
T ss_dssp             CCEEEEEECTTS-CEEEEETTSSEEEEECT-TCSSC------------EEEE--CCSSSCEEEEEECTTSCEEEEETTTE
T ss_pred             cceEEEEEcCCC-cEEEEECCCcEEEEeCC-CCCce------------eECC--CCCCCccceeEECCCCCEEEEeCCce
Confidence            357788999864 66666544333333332 12210            1110  22345788899999998888888888


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecc--cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +++.+...+                +....+...  .....+..+.+ .+++..++.+. +|.| ++....++.-..+..
T Consensus       227 ~~~s~~D~G----------------~tW~~~~~~~~~~~~~~~~v~~-~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          227 IAFSDPDNS----------------ENWGELLSPLRRNSVGFLDLAY-RTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD  287 (327)
T ss_dssp             EEEEETTEE----------------EEECCCBCTTSSCCSCEEEEEE-SSSSCEEEEES-TTCE-EEESSTTSSCEECGG
T ss_pred             EEEecCCCC----------------CeeEeccCCcccCCcceEEEEe-cCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc
Confidence            877653322                111111111  01112778886 77777666655 5666 344554554444432


Q ss_pred             ---ccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          162 ---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       162 ---h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                         ....+..+.|.+++ .++.++.+|.|.-++-
T Consensus       288 ~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          288 VKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             GTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             cCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence               23567888887554 4666777898877664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.22  E-value=0.01  Score=51.93  Aligned_cols=66  Identities=11%  Similarity=-0.011  Sum_probs=43.5

Q ss_pred             CCCcEEEEecCCC-----------eEEEEecCCCceEEEE--ecccccc-eEeEEcCCCCeEEEEecC-----------C
Q 023246          131 PNDEYVMSGSDCG-----------HLFIWKKKGGKLVRLM--VGDRHVV-NQLEPHPHIPMFATCGIE-----------K  185 (285)
Q Consensus       131 ~~~~~l~~~~~dg-----------~v~vwd~~~~~~~~~~--~~h~~~v-~~~~~~p~~~~l~t~~~d-----------~  185 (285)
                      .+++.++.|+.++           .|.+||..+.+-....  ..+.... .+++..|++++++.|+.+           .
T Consensus       409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~  488 (656)
T 1k3i_A          409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF  488 (656)
T ss_dssp             TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred             CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence            4778888887543           6888888766654332  1122222 344667899999998854           4


Q ss_pred             cEEEEcCCCCC
Q 023246          186 TVKLWAPMPTD  196 (285)
Q Consensus       186 ~i~iwd~~~~~  196 (285)
                      .+.+||+.+.+
T Consensus       489 ~v~~ydp~t~~  499 (656)
T 1k3i_A          489 TPEIYVPEQDT  499 (656)
T ss_dssp             CCEEEEGGGTE
T ss_pred             ceEEEcCCCCc
Confidence            68999987654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.015  Score=48.16  Aligned_cols=151  Identities=9%  Similarity=0.069  Sum_probs=87.6

Q ss_pred             ceEEEEEecC--CCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec
Q 023246           63 HITGLAYSNT--SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        63 ~v~~i~~s~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                      ....++++|+  +.++++...+.|+.+|+...                 .+..+.....  ....+++ ++++++|+.+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----------------~v~~~~~~~~--~P~~ia~-d~~G~~lyvad  197 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----------------YVSTVYSGLS--KVRTICW-THEADSMIITN  197 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----------------EEEEEECCCS--CEEEEEE-CTTSSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----------------EEEEEecCCC--CcceEEE-eCCCCEEEEEe
Confidence            4578999973  45555544488999998765                 3333333222  2788997 99999555544


Q ss_pred             C-C----CeEEEEecCCCceE--EEEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCCCCCC--CCcccceee
Q 023246          141 D-C----GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDFPPLP--DNAEKIMKA  210 (285)
Q Consensus       141 ~-d----g~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~  210 (285)
                      . .    ..+.+++.. +...  ..+.. ......++++| ++.++++-..++.|..+++.......+.  ........+
T Consensus       198 ~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gi  275 (430)
T 3tc9_A          198 DQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHI  275 (430)
T ss_dssp             CCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred             CCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence            3 2    234445543 3221  23322 34567889999 6666666667789999998765431110  011112222


Q ss_pred             ccccCCCc-eEEEeCCCCeEEEEEecc
Q 023246          211 NKQGREDH-SRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       211 ~~~~~~~~-~~~~~s~d~~i~vwd~~~  236 (285)
                      .. .++++ ++++-...+.|..++...
T Consensus       276 a~-~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          276 QF-HPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EE-CTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EE-cCCCCEEEEEECCCCEEEEEeCCc
Confidence            22 23334 667777788888888764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.19  E-value=0.051  Score=42.27  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=53.5

Q ss_pred             CCcEEEEecCC-----CeEEEEecCCCceE--EEEecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCCCCC
Q 023246          132 NDEYVMSGSDC-----GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  199 (285)
Q Consensus       132 ~~~~l~~~~~d-----g~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~  199 (285)
                      +++.++.|+.+     ..+.+||..+.+-.  ..+.........+.+  +++.++.|+.+     ..+..||+.+.....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56777777653     36889998766533  222211112222222  56677777654     358889987765322


Q ss_pred             CCCCcccceeeccccCCCceEEEeCCC-----CeEEEEEeccc
Q 023246          200 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  237 (285)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~  237 (285)
                      +.....+.........++.+++.|+.+     ..+.+||+.+.
T Consensus       190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            211111110000111234566666553     56888887765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.12  E-value=0.061  Score=41.80  Aligned_cols=104  Identities=7%  Similarity=0.001  Sum_probs=52.5

Q ss_pred             CCcEEEEecCC-----CeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCCCCC
Q 023246          132 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  199 (285)
Q Consensus       132 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~  199 (285)
                      +++.++.|+.+     ..+.+||..+.+-...  +.........+.+  +++.++.|+.+     ..+.+||+.+.....
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            56777777654     4588999876653322  1111111222222  56677777754     468899987765322


Q ss_pred             CCCCcccceeeccccCCCceEEEeCCC-----CeEEEEEeccc
Q 023246          200 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  237 (285)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~  237 (285)
                      +...............++.+++.|+.+     ..+.+||..+.
T Consensus       237 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            211111100000111234455666544     45677776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.11  E-value=0.065  Score=42.89  Aligned_cols=162  Identities=7%  Similarity=0.056  Sum_probs=91.8

Q ss_pred             eeEEEEcCCCCcEEEEee-------------CCCcEEEEEccCCcccCCcCCCCCccccccccc-CCCCCcceEEEEEec
Q 023246            6 LNAIVIDPRNPNYFAVGG-------------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN   71 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~-------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~   71 (285)
                      ...+.+.|++  ++++++             .+|.|.++|+.+....        ...+..... .....-....+.+.+
T Consensus        52 ~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~--------~~~l~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           52 SEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--------VSELEIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             CCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCC--------EEECEEECSSCCGGGCCEEEEEEEE
T ss_pred             cceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc--------eEEEEccCCCCCcCceeeeeeEEEE
Confidence            4567788864  444554             6899999998743210        011111110 011233566777766


Q ss_pred             --CCC--EEEEe-c--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec----
Q 023246           72 --TSE--LLISY-N--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS----  140 (285)
Q Consensus        72 --~~~--~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----  140 (285)
                        ++.  ++++. .  +.+|.+|++....            .....+..+.+.. -...+.+.+ .++|.+.++..    
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~------------~~~~~~~~~~g~~-~~~pND~~v-~~~G~fyvt~~~~ft  187 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEE------------KSLLHLKTIRHKL-LPSVNDIVA-VGPEHFYATNDHYFI  187 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTT------------TEEEEEEEECCTT-CSSEEEEEE-EETTEEEEEESCSCS
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCC------------CEEEEEeccccCC-CCCCceEEE-eCCCCEEecCCcEeC
Confidence              454  44442 2  5778888876531            0002233343322 123788887 88898877754    


Q ss_pred             -------------CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCC
Q 023246          141 -------------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP  194 (285)
Q Consensus       141 -------------~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~  194 (285)
                                   ..|.|+.+|.  ++.. .+...-...+.++|+|+++.|..+. ..+.|..|++..
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                         1356666665  3322 2322335678999999998866554 567899999863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.09  E-value=0.018  Score=47.72  Aligned_cols=152  Identities=9%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             cceEEEEEecC---CCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           62 IHITGLAYSNT---SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        62 ~~v~~i~~s~~---~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      .....++|+|+   +.++++-..+.|+.++...+                 .+..+.....  ....+++ +++++++++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-----------------~v~~~~~~~~--~P~giav-d~dG~lyVa  198 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-----------------YVDIKTTNIG--QCADVNF-TLNGDMVVV  198 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-----------------EEEEECCCCS--CEEEEEE-CTTCCEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC-----------------EEEEeecCCC--CccEEEE-CCCCCEEEE
Confidence            34678999985   55666533488999998765                 3333433222  2788997 999995555


Q ss_pred             ecCC----CeEEEEecCCCce-EEEEecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCC-CCCCC--Cccccee
Q 023246          139 GSDC----GHLFIWKKKGGKL-VRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDF-PPLPD--NAEKIMK  209 (285)
Q Consensus       139 ~~~d----g~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~  209 (285)
                      -...    ..+...+...+.. ...+. .......++++| ++.++++-..++.|+.+++.++.+ ..+..  .......
T Consensus       199 d~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          199 DDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             ECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             cCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            4321    1244444332221 11222 234567789999 666666666778899999875543 11110  1111111


Q ss_pred             eccccCCCc-eEEEeCCCCeEEEEEec
Q 023246          210 ANKQGREDH-SRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       210 ~~~~~~~~~-~~~~~s~d~~i~vwd~~  235 (285)
                      +.. .+++. ++++-.....|+.+++.
T Consensus       278 ia~-dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          278 IVW-HPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEE-CTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEE-eCCCCEEEEEeCCCCEEEEEeCC
Confidence            222 33333 66677777888888765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.08  E-value=0.027  Score=44.40  Aligned_cols=156  Identities=8%  Similarity=0.059  Sum_probs=94.5

Q ss_pred             eEEEEEecCC-CEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceE-eec----ccCceeeeeEEEe--cCCCc
Q 023246           64 ITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSG----HRNSQTVKGVNFF--GPNDE  134 (285)
Q Consensus        64 v~~i~~s~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~~~~~~--~~~~~  134 (285)
                      ..+++|.+.. .++++. ..++|..|+...+                ..... +..    ......+..+.+.  +++++
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~----------------~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr   78 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ----------------SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR   78 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTC----------------CEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCC----------------eEEEEecCCccccCCCcceeeEEEEeccCCCCc
Confidence            3478998855 455555 4999999998644                11111 211    1111235788852  57787


Q ss_pred             EEEEec-------------CCCeEEEEecC---CCceEEEEe--ccc-----------ccceEeEEcCCCCeEEEEecC-
Q 023246          135 YVMSGS-------------DCGHLFIWKKK---GGKLVRLMV--GDR-----------HVVNQLEPHPHIPMFATCGIE-  184 (285)
Q Consensus       135 ~l~~~~-------------~dg~v~vwd~~---~~~~~~~~~--~h~-----------~~v~~~~~~p~~~~l~t~~~d-  184 (285)
                      ++++..             .+..|..||+.   +++.+....  ...           .....++..++|+..++++.- 
T Consensus        79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred             EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence            777543             26789999999   787765543  111           247899999999999988888 


Q ss_pred             CcEEEEcCCCCCCCCC----CC-C-cccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          185 KTVKLWAPMPTDFPPL----PD-N-AEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       185 ~~i~iwd~~~~~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +.|...++.+..+..+    .. . .....-+. ..+++..++.....+.|..+|+..
T Consensus       159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv-~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGIT-FDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEE-EETTTTEEEEESSSSSEEEEECSS
T ss_pred             CeEEEEeCCCCEEeeeeecCCCcccccCcceEE-EeCCCCEEEEEcCCCeEEEEcCCC
Confidence            8887777765532211    00 0 00011111 123344555544499999999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.95  E-value=0.072  Score=41.78  Aligned_cols=104  Identities=7%  Similarity=-0.018  Sum_probs=50.9

Q ss_pred             CCcEEEEecCC--------CeEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEec-C-----CcEEEEcCCCC
Q 023246          132 NDEYVMSGSDC--------GHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGI-E-----KTVKLWAPMPT  195 (285)
Q Consensus       132 ~~~~l~~~~~d--------g~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~-d-----~~i~iwd~~~~  195 (285)
                      +++.++.|+.+        ..+.+||..+.+-..  .+.........+.  .+++.++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56677777632        458899988664322  1111111111222  35567777765 2     36888998776


Q ss_pred             CCCCCCCCcccceeeccccCCCceEEEeCCCC-----eEEEEEeccc
Q 023246          196 DFPPLPDNAEKIMKANKQGREDHSRITLTPDV-----IMHVLRLQRR  237 (285)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-----~i~vwd~~~~  237 (285)
                      ....+.....+.........++.+++.|+.++     .+.+||..+.
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            43222211111100001112344566655442     5777777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.93  E-value=0.045  Score=42.82  Aligned_cols=104  Identities=9%  Similarity=0.039  Sum_probs=52.3

Q ss_pred             CCcEEEEecCC-----CeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCCCCC
Q 023246          132 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDFPP  199 (285)
Q Consensus       132 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~~~  199 (285)
                      +++.++.|+.+     ..+.+||..+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.....
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56777777643     3588889876543221  1111111222222  56677777654     358889987664322


Q ss_pred             CCCCcccceeeccccCCCceEEEeCCC-----CeEEEEEeccc
Q 023246          200 LPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  237 (285)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~  237 (285)
                      +.....+.........++.+++.|+.+     ..+.+||+.+.
T Consensus       199 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            211111100000011234466666543     56888887664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.92  E-value=0.058  Score=39.81  Aligned_cols=111  Identities=14%  Similarity=0.004  Sum_probs=64.4

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  142 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  142 (285)
                      .++.++|+|+|.+.+. .++.++-.+..+...           ..+-...+.-+........++.| ++++.+.++  .|
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~-----------~~W~~s~t~IG~~Gw~~F~a~~f-D~~G~LYav--~d  106 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDN-----------DNWMGRAKKIGNGGWNQFQFLFF-DPNGYLYAV--SK  106 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTT-----------CCHHHHCEEEECSCGGGCSEEEE-CTTSCEEEE--ET
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCc-----------ccccccccEecccccccceEEEE-CCCCCEEEe--CC
Confidence            6679999999998777 878766666543200           00000001111111111366766 999988877  56


Q ss_pred             CeEEEEecCCCceE------EEE-ecccccceEeEEcCCCCeEEEEecCCcEEEE
Q 023246          143 GHLFIWKKKGGKLV------RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLW  190 (285)
Q Consensus       143 g~v~vwd~~~~~~~------~~~-~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iw  190 (285)
                      |.|+-++-.+...-      ..+ ..--..+..|.+.|+|.+.+..  |+.+.-+
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            99998886432211      111 1112467999999999876666  7765433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.89  E-value=0.1  Score=40.60  Aligned_cols=104  Identities=11%  Similarity=0.050  Sum_probs=51.7

Q ss_pred             CCcEEEEecCC-------CeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCCC
Q 023246          132 NDEYVMSGSDC-------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF  197 (285)
Q Consensus       132 ~~~~l~~~~~d-------g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~  197 (285)
                      +++.++.|+.+       ..+.+||..+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+...
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            56677776642       3588999876643322  2211112222222  56677777754     3688999877653


Q ss_pred             CCCCCCcccceeeccccCCCceEEEeCCC-----CeEEEEEeccc
Q 023246          198 PPLPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  237 (285)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~  237 (285)
                      ..+...............++.+++.|+.+     ..+.+||..+.
T Consensus       233 ~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          233 RQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             eeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            22211111100000111234455666544     34777776654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.89  E-value=0.098  Score=42.70  Aligned_cols=110  Identities=8%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             EEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeeccc--CceeeeeEEEecCCCcEEEEecCCCe
Q 023246           67 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGH  144 (285)
Q Consensus        67 i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~  144 (285)
                      .....+|..++...++.||.-++...                ..-+.+....  .-..+..+.. +|+|++++..+ +..
T Consensus        26 ~~~~~n~t~i~~a~~n~iR~~~i~~~----------------~~Yk~L~~~~~i~f~~i~qlvl-SpsG~lLAl~g-~~~   87 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQDNIIRWYNVLTD----------------SLYHSLNFSRHLVLDDTFHVIS-STSGDLLCLFN-DNE   87 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTC----------------SSCEEEECTTTCCCCTTCEEEE-CTTSSEEEEEC-SSE
T ss_pred             EEEEcCCCEEEEEECCEEEEEECCCC----------------CcceEEecCcccccCceeEEEE-CCCCCEEEEec-CCe
Confidence            34456777888888899998888744                2334444331  1112777886 99999998876 457


Q ss_pred             EEEEecCCCc------------eEEEEec------ccccceEeEEcCCC---CeEEEEecCCcEEEEcCCC
Q 023246          145 LFIWKKKGGK------------LVRLMVG------DRHVVNQLEPHPHI---PMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       145 v~vwd~~~~~------------~~~~~~~------h~~~v~~~~~~p~~---~~l~t~~~d~~i~iwd~~~  194 (285)
                      |.|..+..+.            ..+.+.-      ...+|..+.|||-+   ..|++-..|++|++||+..
T Consensus        88 V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           88 IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             EEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            8888877321            1223332      24679999999954   4699999999999999975

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.86  E-value=0.11  Score=40.50  Aligned_cols=185  Identities=9%  Similarity=0.014  Sum_probs=87.8

Q ss_pred             cEEEEeeC--CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC----CcEEEEEc
Q 023246           17 NYFAVGGS--DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND----ELVYLFEK   89 (285)
Q Consensus        17 ~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d----~~i~iwd~   89 (285)
                      .+++.|+.  ...+.+||..+++....-.            . .........+.  -++.+++. |.+    ..+.+||.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~------------~-p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~   77 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC------------P-FEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNV   77 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCC------------C-SCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEET
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCC------------C-CcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeC
Confidence            56777765  3678899988776432110            0 00011111222  25555555 433    56888888


Q ss_pred             CCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC------CeEEEEecCCCceEEE--Eec
Q 023246           90 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------GHLFIWKKKGGKLVRL--MVG  161 (285)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~--~~~  161 (285)
                      .+.                 ....+..-..+..-.+++.  .+++.++.|+.+      ..+.+||..+.+-...  +..
T Consensus        78 ~~~-----------------~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  138 (306)
T 3ii7_A           78 VKD-----------------SWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT  138 (306)
T ss_dssp             TTT-----------------EEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCC-----------------eEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC
Confidence            765                 2222221111111112222  256777777754      4588999887653322  111


Q ss_pred             ccccceEeEEcCCCCeEEEEec---------CCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCC-----C
Q 023246          162 DRHVVNQLEPHPHIPMFATCGI---------EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-----V  227 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~  227 (285)
                      .......+.+  +++.++.|+.         -..+.+||+.+.....+...............++.+++.|+.+     .
T Consensus       139 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~  216 (306)
T 3ii7_A          139 QRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLD  216 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBC
T ss_pred             CcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCc
Confidence            1111122222  5666666653         2458889987765322211111110000011134455665543     4


Q ss_pred             eEEEEEeccc
Q 023246          228 IMHVLRLQRR  237 (285)
Q Consensus       228 ~i~vwd~~~~  237 (285)
                      .+.+||..+.
T Consensus       217 ~~~~yd~~~~  226 (306)
T 3ii7_A          217 NVEYYDIKLN  226 (306)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEeeCCCC
Confidence            5788887664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.84  E-value=0.019  Score=45.69  Aligned_cols=101  Identities=9%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             CCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCC----C---e-EEEEec--CCcEEEEcC--CCCCCCC
Q 023246          132 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI----P---M-FATCGI--EKTVKLWAP--MPTDFPP  199 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~----~---~-l~t~~~--d~~i~iwd~--~~~~~~~  199 (285)
                      ...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|.-    +   + +++.-.  +.+|.+|++  ..+.+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3455666677889999999 6999988864  567777776632    2   2 233334  578999955  4444333


Q ss_pred             CCC-------Ccccceeecc--ccCCC-ceEEEeCCCCeEEEEEec
Q 023246          200 LPD-------NAEKIMKANK--QGRED-HSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       200 ~~~-------~~~~~~~~~~--~~~~~-~~~~~~s~d~~i~vwd~~  235 (285)
                      +..       ....++-+..  ..... .+++....+|.+..|++.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~  161 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELK  161 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEE
Confidence            311       1022222211  12223 267777888999999994

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.83  E-value=0.13  Score=43.08  Aligned_cols=172  Identities=12%  Similarity=0.047  Sum_probs=95.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEcc-------CCcccCCcCCC--CCcccccccccCCCCCcceEEEEEecCCCE-
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIR-------KCHWYSPISSD--TPVDTFCPRHLIGKNNIHITGLAYSNTSEL-   75 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-   75 (285)
                      ...++++|+++.++++-..++.|..+|+.       ++.........  .....  ...  .........|+|+|+|+. 
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~--l~~--~~~~~~p~~ia~~p~G~~l  324 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQ--LFT--IADPSWEFQIFIHPTGKYA  324 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEE--EEE--CSSSSCCEEEEECTTSSEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccce--eEe--cCCCCCceEEEEcCCCCEE
Confidence            35788999766778888888999999997       55421000000  00000  001  122345679999999994 


Q ss_pred             EEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc------cC------c-eeee-eEEEec-------CCC
Q 023246           76 LIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH------RN------S-QTVK-GVNFFG-------PND  133 (285)
Q Consensus        76 l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------~-~~i~-~~~~~~-------~~~  133 (285)
                      +++ .....|+.++.......    +        .....+.+.      .+      . .... .+.. .       .++
T Consensus       325 YvaD~~~h~I~kid~dg~~~~----~--------~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v-d~~~~~~~~~g  391 (496)
T 3kya_A          325 YFGVINNHYFMRSDYDEIKKE----F--------ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV-KNPDYTGEEEY  391 (496)
T ss_dssp             EEEETTTTEEEEEEEETTTTE----E--------CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE-ECTTCCSSCCE
T ss_pred             EEEeCCCCEEEEEecCCCcce----e--------cccEEecCCCCCCcccCCcccccccCCCeEEEEE-ccccccccCCC
Confidence            444 34788988766432000    0        000111111      00      0 0123 3332 3       456


Q ss_pred             cEEEEecCCCeEEEEecCCCceEEEEeccc------------------------ccceEeEEcCC-CCeEEEEecCCcEE
Q 023246          134 EYVMSGSDCGHLFIWKKKGGKLVRLMVGDR------------------------HVVNQLEPHPH-IPMFATCGIEKTVK  188 (285)
Q Consensus       134 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~------------------------~~v~~~~~~p~-~~~l~t~~~d~~i~  188 (285)
                      .++++=...+.|+.++. ++. +.++.+..                        .....|+++++ +.++++=.....|+
T Consensus       392 ~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIr  469 (496)
T 3kya_A          392 DFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIR  469 (496)
T ss_dssp             EEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence            77777777889999984 464 44443320                        13567888886 65555555667888


Q ss_pred             EEcCCCCC
Q 023246          189 LWAPMPTD  196 (285)
Q Consensus       189 iwd~~~~~  196 (285)
                      .+++....
T Consensus       470 ki~~~~~~  477 (496)
T 3kya_A          470 TISMEQEE  477 (496)
T ss_dssp             EEEECCCC
T ss_pred             EEECCCCc
Confidence            88876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.77  E-value=0.13  Score=40.07  Aligned_cols=104  Identities=10%  Similarity=0.028  Sum_probs=52.5

Q ss_pred             CCcEEEEecC---------CCeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCC
Q 023246          132 NDEYVMSGSD---------CGHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPT  195 (285)
Q Consensus       132 ~~~~l~~~~~---------dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~  195 (285)
                      +++.++.|+.         -..+.+||..+.+-...  +......-..+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            5667777664         34588999887643322  1111111122222  56677777653     35888998776


Q ss_pred             CCCCCCCCcccceeeccccCCCceEEEeCCC-----CeEEEEEeccc
Q 023246          196 DFPPLPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  237 (285)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~  237 (285)
                      ....+...............++.+++.|+.+     ..+.+||..+.
T Consensus       227 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          227 EWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             cEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            5322211111110011111244566666643     56788887664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.73  E-value=0.14  Score=39.79  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=51.0

Q ss_pred             CCcEEEEecCCC-----eEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-------CcEEEEcCCCCCC
Q 023246          132 NDEYVMSGSDCG-----HLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-------KTVKLWAPMPTDF  197 (285)
Q Consensus       132 ~~~~l~~~~~dg-----~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-------~~i~iwd~~~~~~  197 (285)
                      +++.++.|+.++     .+.+||+.+.+-...  +.........+.+  +++.++.|+.+       ..+.+||+.+...
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            566777776543     577888876653322  1111111122222  56666666643       3588899876643


Q ss_pred             CCCCCCcccceeeccccCCCceEEEeCCC-----CeEEEEEeccc
Q 023246          198 PPLPDNAEKIMKANKQGREDHSRITLTPD-----VIMHVLRLQRR  237 (285)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----~~i~vwd~~~~  237 (285)
                      ..+...............++.+++.|+.+     ..+.+||..+.
T Consensus       186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            22111111100000111234566666543     46888887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.68  E-value=0.07  Score=39.40  Aligned_cols=153  Identities=9%  Similarity=-0.001  Sum_probs=78.8

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCC-CCCcceEEEEEecCCCEEEEecCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISYNDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~s~~d~~   83 (285)
                      .+..++|+|++ .+.++  .+|.+.-.+..+.....-..        ....+-. +-. ...++.|.|+|.+.++ +||.
T Consensus        42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~--------s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~  108 (236)
T 1tl2_A           42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMG--------RAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDK  108 (236)
T ss_dssp             TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHH--------HCEEEECSCGG-GCSEEEECTTSCEEEE-ETTE
T ss_pred             cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccc--------cccEecccccc-cceEEEECCCCCEEEe-CCCE
Confidence            56789999964 66665  67765555544322100000        0000000 111 1368999999998888 7798


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCce------EE
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL------VR  157 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~------~~  157 (285)
                      |+-++..+..           -..+......-+...-..+..+.+ .|+|.+.+..  |+.++-....++..      ..
T Consensus       109 iyr~~pP~~~-----------~~~Wl~~a~~vg~~gw~~~~~lff-~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~  174 (236)
T 1tl2_A          109 LYKASPPQSD-----------TDNWIARATEVGSGGWSGFKFLFF-HPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT  174 (236)
T ss_dssp             EEEESCCCST-----------TCCHHHHSEEEECSSGGGEEEEEE-CTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred             EEEeCCCcCC-----------CCceeccccEeccCCCCceEEEEE-CCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence            8877653320           000000011111111123777876 9999888776  77765444332211      11


Q ss_pred             EEe-cccccceEeEEcCCCCeEEEEecCCc
Q 023246          158 LMV-GDRHVVNQLEPHPHIPMFATCGIEKT  186 (285)
Q Consensus       158 ~~~-~h~~~v~~~~~~p~~~~l~t~~~d~~  186 (285)
                      .+- ..-..-.-+.|.|++...+..  ++.
T Consensus       175 ~~g~~g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          175 KIGQGGWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             EEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             eeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence            111 222233446688888776555  663

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.62  E-value=0.18  Score=39.82  Aligned_cols=150  Identities=9%  Similarity=-0.029  Sum_probs=80.8

Q ss_pred             CCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCCCcEEEE
Q 023246           60 NNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        60 h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      +...+..+.+.+++.+++.+.++.+..-+-..+                .....+. ...  ..+..+.+ .++++.++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG----------------~tW~~~~~~~~--~~~~~~~~-~~~g~~~~~  221 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQ----------------TAWEPHNRTTS--RRLHNMGF-TPDGRLWMI  221 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTTC----------------SSCEEEECCSS--SCEEEEEE-CTTSCEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCC----------------CceeECCCCCC--CccceeEE-CCCCCEEEE
Confidence            345688999999999888887776554332112                1222222 122  23778886 788876654


Q ss_pred             ecCCCeEEEEecCCCceEEEEec----ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCC---CCcccceee
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP---DNAEKIMKA  210 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~---~~~~~~~~~  210 (285)
                       +.+|.+++.+...++.-..+..    +...+..+++.|++..++.+ .++.| ++....++- ..+.   .....+..+
T Consensus       222 -~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v  298 (327)
T 2xbg_A          222 -VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKI  298 (327)
T ss_dssp             -ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred             -eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEE
Confidence             4578877764332332222221    22357889998877666554 46766 444444432 1111   111223333


Q ss_pred             ccccCCCceEEEeCCCCeEEEEE
Q 023246          211 NKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       211 ~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      ...  ....+++++.+|.|.-++
T Consensus       299 ~~~--~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          299 LFF--SPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEE--ETTEEEEECSTTEEEEEC
T ss_pred             EEE--CCCceEEEcCCceEEEEc
Confidence            221  233466677788766554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.35  E-value=0.29  Score=39.03  Aligned_cols=156  Identities=13%  Similarity=0.082  Sum_probs=82.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CCEEEE-e-
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLIS-Y-   79 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~s-~-   79 (285)
                      -+.|+|.|++ .++++--..|.|++++...++...       +.  ....+..........|+++|+    +.+.++ + 
T Consensus        34 P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~-------v~--~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           34 PWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTE-------LG--EVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-------EE--ECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             ceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEee-------ec--ccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            4689999986 677666558999998865554210       00  011111233557889999995    444444 2 


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCC-ceEeecccCceeeeeEEEecCCCcEEEEecC-------------CCe
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-------------CGH  144 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-------------dg~  144 (285)
                       .++.|.-|........      ...+...+. +..+.. ........+.| .|++.+.++.++             .|.
T Consensus       104 ~~~~~v~R~~~~~~~~~------~~~~~~~~~i~~~~p~-~~~H~g~~l~f-gpDG~Lyvt~Gd~~~~~~~qd~~~~~G~  175 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPS------GEQLGAPDTVFRGIPK-GVIHNGGRIAF-GPDKMLYAGTGESGDTGLSQDRKSLGGK  175 (347)
T ss_dssp             SSSEEEEEEEBCTTSCT------TCCBCCCEEEEEEECC-CSSCCCCCEEE-CTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred             CCCCEEEEEEeCCCCcc------cccCCCcEEEEEcCCC-CCCccCccccC-CCCCCEEEEECCCCCCccccCCCCCCCE
Confidence             3556666665542100      000000011 111211 11112567887 999988777542             355


Q ss_pred             EEEEecCCC--------c-eEEEEecccccceEeEEcCCCCeEEEE
Q 023246          145 LFIWKKKGG--------K-LVRLMVGDRHVVNQLEPHPHIPMFATC  181 (285)
Q Consensus       145 v~vwd~~~~--------~-~~~~~~~h~~~v~~~~~~p~~~~l~t~  181 (285)
                      |.-++....        . .+. ..+|. ....++|+|++.++++=
T Consensus       176 IlRi~~dG~ip~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          176 ILRMTPDGEPAPGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             EEEECTTSSBCTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEE
T ss_pred             EEEEeCCCCccCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEe
Confidence            665665422        1 122 13454 35689999988765543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.29  E-value=0.28  Score=38.24  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=36.5

Q ss_pred             CCcEEEEecCC-----CeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCC
Q 023246          132 NDEYVMSGSDC-----GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD  196 (285)
Q Consensus       132 ~~~~l~~~~~d-----g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~  196 (285)
                      +++.++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+..
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            56777777654     4588899876543221  1111112222222  56677777654     468899987765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.26  E-value=0.18  Score=39.49  Aligned_cols=63  Identities=11%  Similarity=0.131  Sum_probs=34.3

Q ss_pred             CCcEEEEecCC-------CeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC------CcEEEEcCCCCC
Q 023246          132 NDEYVMSGSDC-------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPTD  196 (285)
Q Consensus       132 ~~~~l~~~~~d-------g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~~~  196 (285)
                      +++.++.|+.+       ..+.+||..+.+-...  +......-. ++. .+++.++.|+.+      ..+.+||+.+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            56666776653       3578888876543321  111111111 222 356666666642      358899987764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.06  Score=42.76  Aligned_cols=146  Identities=15%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCC--CCcccccccccCCCCCcceEEEEEecCCCEEEE--ecCCcEEEEEcCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSD--TPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS--YNDELVYLFEKNMG   92 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s--~~d~~i~iwd~~~~   92 (285)
                      .+++.++.||.|.-.|..+|+.....+..  .++..     . .....       ..++..++.  ..||.|..++..++
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-----~-~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-----I-QEPSR-------LETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-----C-CCSCT-------TTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-----e-cCCcc-------ccCCcEEEEEECCCCEEEEEECCCC
Confidence            58889999999999999999865443322  11100     0 00000       012334433  35888888887655


Q ss_pred             CCCCCCCCCCccccCCCCceEeeccc--Cceeeee---EEEec----CCCcEEEEecCCCeEEEEecCCCceEEEEeccc
Q 023246           93 LGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKG---VNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR  163 (285)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~---~~~~~----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  163 (285)
                                      .....+....  ...++..   .....    ..+..+++|+.+|.++..|+.+|+.+..+....
T Consensus        78 ----------------~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~  141 (339)
T 2be1_A           78 ----------------LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS  141 (339)
T ss_dssp             ----------------EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred             ----------------cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence                            1111111110  0000110   00000    156788999999999999999999999886321


Q ss_pred             --cc-----ceEeEEc-----CCCCeEEEEecCCcEEEEc
Q 023246          164 --HV-----VNQLEPH-----PHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       164 --~~-----v~~~~~~-----p~~~~l~t~~~d~~i~iwd  191 (285)
                        +.     ..+....     -.+..++.+..+..+.+.+
T Consensus       142 ~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          142 KNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             BCC--------------------CCEEEEEEEEEECEECC
T ss_pred             CcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence              10     0011110     1234566777777777766

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.88  E-value=0.47  Score=39.45  Aligned_cols=63  Identities=13%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccC--CCCCcceEEEEEecC----CCEEEE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI--GKNNIHITGLAYSNT----SELLIS   78 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~i~~s~~----~~~l~s   78 (285)
                      -++|+|.|++ +++++-...+.|++++..+++...       +..  .....  .........|+|+|+    +.+.++
T Consensus        29 P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~-------~~~--~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           29 PHALLWGPDN-QIWLTERATGKILRVNPESGSVKT-------VFQ--VPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             EEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEE-------EEE--CTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             ceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeE-------Eec--CCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            4589999986 666665444568888765443210       000  01111  113456789999994    444444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.69  E-value=0.55  Score=36.64  Aligned_cols=63  Identities=10%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             CCcEEEEecC------CCeEEEEecCCCceEE--EEecccccceEeEEcCCCCeEEEEecCC-----cEEEEcCCCCC
Q 023246          132 NDEYVMSGSD------CGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTD  196 (285)
Q Consensus       132 ~~~~l~~~~~------dg~v~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~~~~  196 (285)
                      +++.++.|+.      -..+.+||..+.+-..  .+........++.+  +++.++.|+.++     .+.+||+.+..
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            5667777765      2468899987664322  11111111122222  566777777554     57888987765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.61  E-value=0.75  Score=37.64  Aligned_cols=122  Identities=14%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccc-cCCCCceEeeccc----CceeeeeEEEecCC---Cc
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDL-QKREEPQVYSGHR----NSQTVKGVNFFGPN---DE  134 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~i~~~~~~~~~---~~  134 (285)
                      .|..+..+|+|.+||...+..|.|..+..+......    ... ... ..+.+.-..    ....|..+.| +|-   +.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~----~~~~~~~-q~~ty~l~~~~~~~~s~I~qVlW-HPl~~~ds  140 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED----VSIQDAF-QIFHYSIDEEEVGPKSSIKKVLF-HPKSYRDS  140 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC----HHHHHTT-EEEEEEGGGCC--CCCCEEEEEE-CTTBGGGC
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc----ccccccc-ceeEEEcCCcccCCCCceeEEEe-ccccCCCC
Confidence            467799999999999999999999999743110000    000 000 112332211    1234889986 764   45


Q ss_pred             EEEEecCCCeEEEEecCCC--ceEEEEe---------cccccceEeEEcCCCCeEEEEe--cCCcEEEEc
Q 023246          135 YVMSGSDCGHLFIWKKKGG--KLVRLMV---------GDRHVVNQLEPHPHIPMFATCG--IEKTVKLWA  191 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~--~~~~~~~---------~h~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd  191 (285)
                      .|++-..|+.|++||+...  ++. .+.         .....|.+++|.+++-.|...+  ..|.|+-..
T Consensus       141 ~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          141 CIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             eEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            8999999999999998752  222 332         1225688899998765566644  778776554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.58  E-value=0.69  Score=37.00  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=78.3

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CCEEEEec-
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISYN-   80 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~s~~-   80 (285)
                      -.+++|.|++ + |+.+..+|.|++++. .++ .       .+..+.   +..........|+++|+    +.++++.. 
T Consensus        31 P~~ia~~pdG-~-l~V~e~~g~I~~~d~-~G~-~-------~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           31 PWSIAPLGGG-R-YLVTERPGRLVLISP-SGK-K-------LVASFD---VANVGEAGLLGLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEEEETT-E-EEEEETTTEEEEECS-SCE-E-------EEEECC---CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CeEEEEcCCC-e-EEEEeCCCEEEEEeC-CCc-e-------Eeeccc---eeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence            4679999975 5 444566699998873 332 1       011000   11122346789999997    45555532 


Q ss_pred             ---C----CcEEEEEcCCCCCCCCCCCCCccccCCCC-ceEeecccCceeeeeEEEecCCCcEEEEecC-----------
Q 023246           81 ---D----ELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----------  141 (285)
Q Consensus        81 ---d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------  141 (285)
                         +    ..|..|+......         .+...+. +..+.... ......+.| .|+|.+.++.+.           
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~---------~~~~~~~l~~~~~~~~-~h~~~~l~~-~pDG~Lyvt~G~~~~~~~~~d~~  165 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTF---------KLKEVKTLIDGIPGAY-IHNGGRIRF-GPDGMLYITTGDAADPRLAQDLS  165 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSC---------CEEEEEEEEEEEECCS-SCCCCCEEE-CTTSCEEEECCCTTCGGGGTCTT
T ss_pred             cCCCCCcceEEEEEEECCCCc---------CcCccEEEEEcCCCCC-CcCCceEEE-CCCCcEEEEECCCCCCccccCCC
Confidence               3    5677777653200         0000011 11122111 112567887 999987777442           


Q ss_pred             --CCeEEEEecCCC--------c-eEEEEecccccceEeEEcC-CCCeEEEE
Q 023246          142 --CGHLFIWKKKGG--------K-LVRLMVGDRHVVNQLEPHP-HIPMFATC  181 (285)
Q Consensus       142 --dg~v~vwd~~~~--------~-~~~~~~~h~~~v~~~~~~p-~~~~l~t~  181 (285)
                        .|.|.-++....        . .+. ..++. ....++|+| ++.++++-
T Consensus       166 ~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          166 SLAGKILRVDEEGRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCSSEEEEECTTSCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEe
Confidence              256776666422        1 122 23343 356899999 66655543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.42  E-value=0.91  Score=37.34  Aligned_cols=204  Identities=9%  Similarity=0.144  Sum_probs=116.6

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEE
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFE   88 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd   88 (285)
                      .-.+|.. ..+|.-. ..+++|+|+.+.+.++....                ...|.-=.|-.+ +.|+--.+..|+-|+
T Consensus        71 AIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~----------------~e~VvfWkWis~-~~l~lVT~taVyHWs  131 (494)
T 1bpo_A           71 AIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM----------------TDDVTFWKWISL-NTVALVTDNAVYHWS  131 (494)
T ss_dssp             EEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEEC----------------SSCCCEEEEEET-TEEEEECSSEEEEEE
T ss_pred             eeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceec----------------CCCceEEEecCC-CeEEEEcCCeeEEec
Confidence            4568854 6777665 68999999998764322111                224444455443 355556678899999


Q ss_pred             cCCCCCCCCCCCCCccccCCCCceEeecccCc--eeeeeEEEecCCCcEEEEec-------CCCeEEEEecCCCceEEEE
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGS-------DCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~-------~dg~v~vwd~~~~~~~~~~  159 (285)
                      +....               .+.+.|..|..-  ..|..... +++.++++..+       -.|.+.+|..+ .+.-..+
T Consensus       132 i~~~s---------------~P~kvFdR~~~L~~~QIInY~~-d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~i  194 (494)
T 1bpo_A          132 MEGES---------------QPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPI  194 (494)
T ss_dssp             SSSSC---------------CCEEEEECCGGGTTCEEEEEEE-CTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEE
T ss_pred             ccCCC---------------CchhheecchhcccceEEEEEE-CCCCCeEEEEeecccCCcccceEEEeecc-ccccchh
Confidence            96532               355666554431  22555554 78888776433       25778899987 4455667


Q ss_pred             ecccccceEeEEcCCC---CeEEEEecC---CcEEEEcCCCC--CCCCCCCCccc-----------ceeeccccCCCceE
Q 023246          160 VGDRHVVNQLEPHPHI---PMFATCGIE---KTVKLWAPMPT--DFPPLPDNAEK-----------IMKANKQGREDHSR  220 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~---~~l~t~~~d---~~i~iwd~~~~--~~~~~~~~~~~-----------~~~~~~~~~~~~~~  220 (285)
                      .+|...-..+...-+.   ..++.+...   +.+++.++...  ....+......           .+.. ..+..-+.+
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam-qvs~kygvi  273 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM-QISEKHDVV  273 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE-EEETTTTEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE-EecccCCEE
Confidence            7776555444332111   134444432   68899888433  11111100000           0011 011223466


Q ss_pred             EEeCCCCeEEEEEecccccceeEeeeccc
Q 023246          221 ITLTPDVIMHVLRLQRRQTLAYRERRYNA  249 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~~~~~~~~~~~~~  249 (285)
                      ...+.-|.++++|+.++..+..-..+.+.
T Consensus       274 yviTK~G~i~lyDleTgt~i~~nrIs~~~  302 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYMNRISGET  302 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEEecCceEEEEecccceeeeeecccCCc
Confidence            67788899999999999777665544433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.17  E-value=0.93  Score=36.00  Aligned_cols=49  Identities=6%  Similarity=-0.159  Sum_probs=24.9

Q ss_pred             CeEEEEecCCCceE--EEEecccccceEeEEcCCCCeEEEEec------CCcEEEEcC
Q 023246          143 GHLFIWKKKGGKLV--RLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAP  192 (285)
Q Consensus       143 g~v~vwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~  192 (285)
                      ..+.+||..+.+-.  ..+......-.+++.. ++++++.|+.      ...+..|++
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            57889998876533  2222111111223322 4566666653      235667776

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.82  E-value=1.2  Score=35.46  Aligned_cols=193  Identities=9%  Similarity=0.100  Sum_probs=107.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEec----CCC---EEEEe--c--CCcEE
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN----TSE---LLISY--N--DELVY   85 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~----~~~---~l~s~--~--d~~i~   85 (285)
                      .+++.....+-+.+||+ .++.+              ..+ .  .+.++.+..-|    .|+   +++++  .  +++|.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l--------------~~~-~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKML--------------HSY-N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEE--------------EEE-C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEE--------------EEc-c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence            45666667789999999 56632              222 1  13455555555    232   23333  3  57899


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecc-----cCceeeeeEEEe-cC-CCc-EEEEecCCCeEEEEecC------
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-----RNSQTVKGVNFF-GP-NDE-YVMSGSDCGHLFIWKKK------  151 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~-~~-~~~-~l~~~~~dg~v~vwd~~------  151 (285)
                      +|++....               ..+..+...     .....+..++++ ++ .++ +++....+|.+..|++.      
T Consensus       103 vf~iDp~~---------------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~  167 (355)
T 3amr_A          103 IYAIDGKN---------------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY  167 (355)
T ss_dssp             EEEECTTT---------------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC
T ss_pred             EEEECCCC---------------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc
Confidence            99874221               122222110     110226667653 44 343 67888889999999873      


Q ss_pred             -CCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCC-----CC-CCCC-CCcc-cc--eeeccccCCCceE
Q 023246          152 -GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DF-PPLP-DNAE-KI--MKANKQGREDHSR  220 (285)
Q Consensus       152 -~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~-~~~~-~~~~-~~--~~~~~~~~~~~~~  220 (285)
                       +.+.++++.. .+.+..+...+....|..+-++.-|..++.+..     .+ ..+. ++.. .+  +.+.......+++
T Consensus       168 ~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          168 ISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             EEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             ccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence             2355677764 357888999998889999998866666664321     11 1111 1111 11  2222112223355


Q ss_pred             EEeC-CCCeEEEEEec-ccccceeE
Q 023246          221 ITLT-PDVIMHVLRLQ-RRQTLAYR  243 (285)
Q Consensus       221 ~~~s-~d~~i~vwd~~-~~~~~~~~  243 (285)
                      ++.+ .+..+.+||.+ ..+.+..+
T Consensus       247 ivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCCcEEEEE
Confidence            5544 57899999986 44444433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.75  E-value=1.3  Score=35.40  Aligned_cols=149  Identities=13%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CCEEEEec-
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISYN-   80 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~s~~-   80 (285)
                      -..++|.|++ ++++ +..+|.|++++  .++..       .+..  .. ...........|+|+|+    +.++++.. 
T Consensus        33 P~~ia~~pdG-~l~V-~e~~g~I~~i~--~g~~~-------~~~~--~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           33 PWALAFLPDG-GMLI-AERPGRIRLFR--EGRLS-------TYAE--LS-VYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             EEEEEECTTS-CEEE-EETTTEEEEEE--TTEEE-------EEEE--CC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             ceEEEEcCCC-eEEE-EeCCCeEEEEE--CCCcc-------Eeec--ce-EeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            3579999986 6554 45669999988  34311       0100  01 11122446789999998    44445432 


Q ss_pred             C-----CcEEEEEcCCCCCCCCCCCCCccccCCC-CceEeec-ccCceeeeeEEEecCCCcEEEEecC------------
Q 023246           81 D-----ELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSD------------  141 (285)
Q Consensus        81 d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~------------  141 (285)
                      .     ..|..|+.....           +...+ .+..+.. .........++| .|+|.+.++.+.            
T Consensus        99 ~~~~~~~~v~r~~~~~~~-----------~~~~~~l~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~G~~~~~~~~~d~~~  166 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGER-----------GVLDRVVLDGIPARPHGLHSGGRIAF-GPDGMLYVTTGEVYERELAQDLAS  166 (352)
T ss_dssp             CTTSSEEEEEEEEECSSC-----------EEEEEEEEEEECCCTTCCCCCCCEEE-CTTSCEEEECCCTTCGGGGGCTTC
T ss_pred             CCCCCccEEEEEEeCCCC-----------cCceEEEEEeCCCCCCCCcCCceEEE-CCCCCEEEEECCCCCCccccCCCC
Confidence            2     678888775320           00001 1111221 011112467887 999987776432            


Q ss_pred             -CCeEEEEecCC--------------CceEEEEecccccceEeEEcC-CCCeEEEEe
Q 023246          142 -CGHLFIWKKKG--------------GKLVRLMVGDRHVVNQLEPHP-HIPMFATCG  182 (285)
Q Consensus       142 -dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~p-~~~~l~t~~  182 (285)
                       .|.|.-++...              ...+. ..++. ....++|+| ++.++++-.
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECCS-EECCCEECTTTCCEEEEEE
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcCC-CcccEEEECCCCCEEEEEc
Confidence             25677777652              01121 12333 357789999 666554443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.62  E-value=0.38  Score=45.03  Aligned_cols=132  Identities=13%  Similarity=0.082  Sum_probs=71.1

Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      |.|++|++...                 .++.+....-+..+++++-  -+|+++++.  ...|++|++...+.+..-..
T Consensus       864 Gri~vf~v~~~-----------------kL~lv~~~~v~g~v~al~~--~~g~Lla~i--g~~l~vy~l~~~~~L~~~~~  922 (1158)
T 3ei3_A          864 GRIVVFQYSDG-----------------KLQTVAEKEVKGAVYSMVE--FNGKLLASI--NSTVRLYEWTTEKELRTECN  922 (1158)
T ss_dssp             EEEEEEEEETT-----------------EEEEEEEEEESSCEEEEEE--ETTEEEEEE--TTEEEEEEECTTSCEEEEEE
T ss_pred             eEEEEEEEECC-----------------EEEEEEEEEcCCcCEEEee--eCCEEEEEc--CCEEEEEECCCCceEEEEee
Confidence            67999998632                 2222222222233888873  356555544  47899999986655441111


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcC--CCCCCCCCCC--CcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP--MPTDFPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +-..|..+.....+.+++.|..-..|.+...  ...++..+..  ....+.+.  ...+...++.+..+|.+.++....
T Consensus       923 ~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~--~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          923 HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAV--EILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEE--EEEETTEEEEEETTSEEEEEEECT
T ss_pred             ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEE--EEEccCcEEEEcCCCcEEEEecCC
Confidence            1122333333335778888887777776543  3322222211  11222222  122334677788899999998765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.45  E-value=1.5  Score=34.96  Aligned_cols=103  Identities=19%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee-cccCceeeeeEEEecCC---CcEE-E
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPN---DEYV-M  137 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~---~~~l-~  137 (285)
                      ....++|.|+|+++++-.++.|.+++  .+.              ...+..+. ..........+++ +|+   +..| +
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~--------------~~~~~~~~v~~~g~~~p~gia~-~pdf~~~g~lYv   94 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGR--------------LSTYAELSVYHRGESGLLGLAL-HPRFPQEPYVYA   94 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTE--------------EEEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCC--------------ccEeecceEeecCCCCceeEEE-CCCCCCCCEEEE
Confidence            46799999999988887779999998  220              01111111 0011123788997 887   4444 4


Q ss_pred             EecCC-----CeEEEEecCCCc-----eE-EEEe---cccccceEeEEcCCCCeEEEEe
Q 023246          138 SGSDC-----GHLFIWKKKGGK-----LV-RLMV---GDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       138 ~~~~d-----g~v~vwd~~~~~-----~~-~~~~---~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                      +-...     +.|..++...+.     .+ ..+.   ........++|.|+|.+.++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            43322     678888876432     11 2233   1112346899999997766644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.36  E-value=1.6  Score=34.88  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCC-CceEee-cccCceeeeeEEEecCC----CcEE
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYS-GHRNSQTVKGVNFFGPN----DEYV  136 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~~~~~~~~----~~~l  136 (285)
                      ....++|.|+|+++++-.++.|++++. .+                + .+..+. ..........+++ +|+    +.+.
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G----------------~~~~~~~~v~~~g~~g~~gia~-~pdf~~~g~ly   91 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISP-SG----------------KKLVASFDVANVGEAGLLGLAL-HPEFPKKSWVY   91 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECS-SC----------------EEEEEECCCCCSTTCSEEEEEE-CTTTTTSCEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeC-CC----------------ceEeeccceeecCCCceeeEEe-CCCCCcCCEEE
Confidence            567999999999888877799998863 32                1 111111 0111122788997 886    4444


Q ss_pred             EEecC---C----CeEEEEecCCC--c-----eE-EEEec-ccccceEeEEcCCCCeEEEEe
Q 023246          137 MSGSD---C----GHLFIWKKKGG--K-----LV-RLMVG-DRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       137 ~~~~~---d----g~v~vwd~~~~--~-----~~-~~~~~-h~~~v~~~~~~p~~~~l~t~~  182 (285)
                      ++-+.   +    ..|..|+....  .     .+ ..+.. .......|+|.|++.+.++.+
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            44332   3    67888887643  1     11 11221 112356799999998766654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.32  E-value=1.9  Score=35.56  Aligned_cols=170  Identities=8%  Similarity=0.069  Sum_probs=102.4

Q ss_pred             ccceeEEEEcCCCCcEEEEee------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--
Q 023246            3 SIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--   74 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--   74 (285)
                      +..|..-..+++..-++++|-      -.|.+.+|..+.+.                ...+.+|......+....+..  
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----------------SQPIEGHAASFAQFKMEGNAEES  213 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC----------------EEEECCSEEEEEEEECTTCSSEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc----------------cchheeeeeeeEEEecCCCCCCc
Confidence            445666677787644444443      24778888887543                223367776655544432221  


Q ss_pred             -EEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe-ecccCceeeeeEEEecCCCcEEEEecCCCeEEEE
Q 023246           75 -LLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY-SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        75 -~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw  148 (285)
                       +++-+.    .++++|.++....... ..+..      +.+..+ .........-++.. ++....++.-+.-|.+++|
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~-~~f~k------k~vdv~fppe~~~DFPvamqv-s~kygviyviTK~G~i~ly  285 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPK------KAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLY  285 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTTC-CCCCC------EEEECCCCTTSTTCCEEEEEE-ETTTTEEEEEETTSEEEEE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccCC-CCccc------eeeeeeCCcccccCceeEEEe-cccCCEEEEEecCceEEEE
Confidence             333332    4789999996541000 01100      011111 11111122455665 7777788888999999999


Q ss_pred             ecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          149 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       149 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      |++++.++..-+-....|..-+-+....-++.....|.|.--.++...
T Consensus       286 DleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             ecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            999999998777666777766666666667777888888777776554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.20  E-value=1.7  Score=40.79  Aligned_cols=148  Identities=9%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             EcCCCCcEEEEee----------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246           11 IDPRNPNYFAVGG----------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus        11 ~s~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      |..+...+|+.|+          ..|.|.+|++..+++             ...+. ....++|++++-- +| +|+++-
T Consensus       839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-------------~lv~~-~~v~g~v~al~~~-~g-~Lla~i  902 (1158)
T 3ei3_A          839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-------------QTVAE-KEVKGAVYSMVEF-NG-KLLASI  902 (1158)
T ss_dssp             CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-------------EEEEE-EEESSCEEEEEEE-TT-EEEEEE
T ss_pred             EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-------------EEEEE-EEcCCcCEEEeee-CC-EEEEEc
Confidence            4443347888886          357899999874331             11111 2235678887643 34 666677


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEe--cCCCceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK--KKGGKLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd--~~~~~~~~~  158 (285)
                      ..+|++|++...                +.++ ....... .+..+.. ...+++++.|..-..|.++.  ...++....
T Consensus       903 g~~l~vy~l~~~----------------~~L~-~~~~~~~-~i~~~~l-~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          903 NSTVRLYEWTTE----------------KELR-TECNHYN-NIMALYL-KTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             TTEEEEEEECTT----------------SCEE-EEEEECC-CSCEEEE-EEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCC----------------ceEE-EEeeccc-cEEEEEE-eccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            789999999764                2222 1111100 0222221 23467888888776666654  443333322


Q ss_pred             Ee-cccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          159 MV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       159 ~~-~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      -. .+...++++.+-.+ ..++.+..+|.+.+.....
T Consensus       964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             EeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            22 23456777777644 4677788999999886543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.00  E-value=0.84  Score=36.27  Aligned_cols=22  Identities=23%  Similarity=0.614  Sum_probs=15.7

Q ss_pred             cEEEEeeC-C---------CcEEEEEccCCcc
Q 023246           17 NYFAVGGS-D---------EYARVYDIRKCHW   38 (285)
Q Consensus        17 ~~l~tg~~-d---------g~v~iwd~~~~~~   38 (285)
                      .+++.|+. +         ..+.+||+.+.+.
T Consensus        67 ~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             EEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             EEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            67777776 2         4688899887753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.97  E-value=1.7  Score=33.82  Aligned_cols=65  Identities=17%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             CCCcEEEEecC------CCeEEEEecCCCceEEE--EecccccceEeEEcCCCCeEEEEecC-----CcEEEEcCCCCCC
Q 023246          131 PNDEYVMSGSD------CGHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF  197 (285)
Q Consensus       131 ~~~~~l~~~~~------dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~  197 (285)
                      .+++.++.|+.      -..+.+||..+.+-...  +.........+.+  +++.++.|+.+     ..+.+||+.+...
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            35667777764      23588999887653322  1111111122222  56677777643     2577889877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.057  Score=42.90  Aligned_cols=111  Identities=9%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecc-cccceEeEE--cC-CCCeEEEE-ecCCcEEEEcCCCCCCCCCCCCcccc
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD-RHVVNQLEP--HP-HIPMFATC-GIEKTVKLWAPMPTDFPPLPDNAEKI  207 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~--~p-~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~  207 (285)
                      +..++.++.||.|+-+|..+|+.+.++... ..++....-  .+ ++..++.. ..||.|..++..++... +.......
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccc
Confidence            347888999999999999999999988754 122222110  01 22333333 57999999998766321 11011111


Q ss_pred             eeecccc-------------CCCceEEEeCCCCeEEEEEecccccceeEe
Q 023246          208 MKANKQG-------------REDHSRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       208 ~~~~~~~-------------~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +......             ..+..+++++.++.+...|+.+++.+-.+.
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            1000000             134578899999999999999988776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.67  E-value=1.6  Score=41.69  Aligned_cols=149  Identities=11%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             EEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEE
Q 023246           67 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF  146 (285)
Q Consensus        67 i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~  146 (285)
                      .-.+|..+.+|--...++.|||+.+.                ..++.   |.....|.--.|.++  +.++..+ +..|+
T Consensus        71 AIMnP~~~iiALrag~~lQiFnl~~k----------------~klks---~~~~e~VvfWkWis~--~~l~lVT-~~aVy  128 (1630)
T 1xi4_A           71 AIMNPASKVIALKAGKTLQIFNIEMK----------------SKMKA---HTMTDDVTFWKWISL--NTVALVT-DNAVY  128 (1630)
T ss_pred             hccCCCcceEEEecCCeEEEeehHHh----------------hhhcc---cccCCCceEEEecCC--CeeEEEc-CCeEE
Confidence            44567777777756889999999876                33333   333223444443233  3333333 46799


Q ss_pred             EEecCC-CceEEEEecc----cccceEeEEcCCCCeEEEEe-------cCCcEEEEcCCCCCCCCCCCCcccceeecccc
Q 023246          147 IWKKKG-GKLVRLMVGD----RHVVNQLEPHPHIPMFATCG-------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       147 vwd~~~-~~~~~~~~~h----~~~v~~~~~~p~~~~l~t~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (285)
                      -|++.. ..+...+..|    ...|.....+++.++++..|       -.|.+.+|..+.+..+.+.+|...........
T Consensus       129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~  208 (1630)
T 1xi4_A          129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEG  208 (1630)
T ss_pred             EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCC
Confidence            999963 3444444433    35677778899999965443       24788999988777667777765543332221


Q ss_pred             C-CCceEEEeCC----CCeEEEEEeccc
Q 023246          215 R-EDHSRITLTP----DVIMHVLRLQRR  237 (285)
Q Consensus       215 ~-~~~~~~~~s~----d~~i~vwd~~~~  237 (285)
                      . ....+++...    .+.++|-++...
T Consensus       209 ~~~~~~l~~f~~~~~~g~kLhi~Ei~~~  236 (1630)
T 1xi4_A          209 NAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (1630)
T ss_pred             CCCCceEEEEEEecCCCceEEEEecCCC
Confidence            1 1122333322    278999998653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.52  E-value=2.3  Score=33.87  Aligned_cols=153  Identities=10%  Similarity=0.076  Sum_probs=76.2

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC----CCEEEEe-c
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELLISY-N   80 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~s~-~   80 (285)
                      -..|+|.|++ +.|+.+...|.|++++.. +....      .+..  ...+..........|+|+|+    +.+.++. .
T Consensus        20 P~~i~~~pdG-~~l~V~e~~G~i~~~~~~-g~~~~------~~~~--~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~   89 (353)
T 2g8s_A           20 PWALAFLPDN-HGMLITLRGGELRHWQAG-KGLSA------PLSG--VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE   89 (353)
T ss_dssp             EEEEEECSTT-CCEEEEETTTEEEEEETT-TEECC------CCBS--CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             cEEEEEcCCC-CEEEEEeCCceEEEEeCC-Cceee------EecC--CcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence            4689999986 624455567999988853 32110      0110  01111122345789999995    5555542 2


Q ss_pred             -------CCcEEEEEcCCCCCCCCCCCCCccccCCCCc-eEeecc-cCceeeeeEEEecCCCcEEEEecC----------
Q 023246           81 -------DELVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGH-RNSQTVKGVNFFGPNDEYVMSGSD----------  141 (285)
Q Consensus        81 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~----------  141 (285)
                             ...|..|+.....         ..+...+.+ ..+... ........+.| .|++.+.++.+.          
T Consensus        90 ~~~~g~~~~~v~r~~~~~~~---------~~~~~~~~i~~~~p~~~~~~h~~~~l~~-~pdG~Lyv~~Gd~~~~~~~q~~  159 (353)
T 2g8s_A           90 VGDDGKAGTAVGYGRLSDDL---------SKVTDFRTVFRQMPKLSTGNHFGGRLVF-DGKGYLFIALGENNQRPTAQDL  159 (353)
T ss_dssp             ECSSSCEEEEEEEEEECTTS---------SBEEEEEEEEECSSCCBSSSCCCCCEEE-CSSSEEEEEECCTTCGGGGGCT
T ss_pred             CCCCCCceeEEEEEEECCCC---------CCCCceEEEEEECCCCCCCcccCccEEE-CCCCcEEEEECCCCCCCccCCC
Confidence                   1346666654320         000000000 011100 01111457887 999977666543          


Q ss_pred             ---CCeEEEEecCCC--------------ceEEEEecccccceEeEEcC-CCCeEEE
Q 023246          142 ---CGHLFIWKKKGG--------------KLVRLMVGDRHVVNQLEPHP-HIPMFAT  180 (285)
Q Consensus       142 ---dg~v~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~p-~~~~l~t  180 (285)
                         .|.|.-++....              ..+.. .+|. ....++|+| ++.++++
T Consensus       160 ~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          160 DKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence               256777776532              11211 2343 467899999 5655443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.48  E-value=3.9  Score=36.34  Aligned_cols=191  Identities=12%  Similarity=0.091  Sum_probs=98.3

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      ...|.++....++  .|..|+.+| +..||..+.+...            ..   ......|.++.. .+|.+.++..+ 
T Consensus        62 ~~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~f~~------------~~---~~~~~~i~~i~~-~~g~lWigt~~-  121 (758)
T 3ott_A           62 NTRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADRYEQ------------PE---TDFPTDVRTMAL-QGDTLWLGALN-  121 (758)
T ss_dssp             SSCEEEEEEETTT--EEEEEETTE-EEEEETTTTEECC------------CS---CCCCSCEEEEEE-ETTEEEEEETT-
T ss_pred             CceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCEEEC------------cc---cCCCceEEEEEe-cCCcEEEEcCC-
Confidence            3467888777753  555666655 7789987654211            00   111234676654 45655554444 


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc---cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH---RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                      -|..++..+.                 ....+...   .....|.++.. +.++.+.+. +.. -|..++..+++.....
T Consensus       122 Gl~~~~~~~~-----------------~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~  181 (758)
T 3ott_A          122 GLYTYQLQSR-----------------KLTSFDTRRNGLPNNTIYSIIR-TKDNQIYVG-TYN-GLCRYIPSNGKFEGIP  181 (758)
T ss_dssp             EEEEEETTTC-----------------CEEEECHHHHCCSCSCEEEEEE-CTTCCEEEE-ETT-EEEEEETTTTEEEEEC
T ss_pred             cceeEeCCCC-----------------eEEEeccCCCCcCCCeEEEEEE-cCCCCEEEE-eCC-CHhhCccCCCceEEec
Confidence            6888887654                 22223110   01123777775 677776654 434 4778887765433211


Q ss_pred             -ecc----cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCC-cccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          160 -VGD----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN-AEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       160 -~~h----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                       ...    ...|.++...+++..|..+.. +-+..++.....+..+... ...+..+. ... ...+..++. +-+.+++
T Consensus       182 ~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~-~d~-~g~lWigT~-~Gl~~~~  257 (758)
T 3ott_A          182 LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLA-LDG-NGDLLAGTD-NGLYVYH  257 (758)
T ss_dssp             CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEE-ECT-TCCEEEEET-TEEEEEC
T ss_pred             CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEE-EcC-CCCEEEEeC-CceeEEe
Confidence             111    124778888777664434443 3477788766543222111 11122221 122 233444554 4567777


Q ss_pred             eccc
Q 023246          234 LQRR  237 (285)
Q Consensus       234 ~~~~  237 (285)
                      ..+.
T Consensus       258 ~~~~  261 (758)
T 3ott_A          258 NDTT  261 (758)
T ss_dssp             CTTS
T ss_pred             cCCC
Confidence            6544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.33  E-value=4.1  Score=36.17  Aligned_cols=169  Identities=12%  Similarity=0.027  Sum_probs=91.5

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccC-CCCCcceEEEEEecCCCEEEEecCC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYNDE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~i~~s~~~~~l~s~~d~   82 (285)
                      ..|.++.-.+++ .+ -.|+ ++-+..||..+++....          ...... ......|.++...++|.+.++...+
T Consensus       373 ~~v~~i~~d~~g-~l-Wigt-~~GL~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~  439 (758)
T 3ott_A          373 NRIRHIYEDKEQ-QL-WIAT-DGSINRYDYATRQFIHY----------NIVDNTGTYNTNWTYYIFEDTAGQLWISTCLG  439 (758)
T ss_dssp             SCEEEEEECTTS-CE-EEEE-TTEEEEEETTTTEEEEE----------EEECCC--CBSSSEEEEEECTTSEEEEEESSS
T ss_pred             CceEEEEECCCC-CE-EEEe-CCcHhhcCcCCCcEEEe----------ecCCCcCCCCCceEEEEEEcCCCCEEEEECCC
Confidence            457788777764 44 3455 45688899877653211          000000 0123468888888888776666556


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCc---eEeeccc--CceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCCceE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYSGHR--NSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~~~~  156 (285)
                      -|.+++..+...           ......   ..+....  ....|.++.. +.++++.+. ++. +-|..+|..+++..
T Consensus       440 Gl~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWi~~~t~-~Gl~~~d~~~~~~~  506 (758)
T 3ott_A          440 GIFVVDKHKLMQ-----------STSGQYIAEQNYSVHNGLSGMFINQIIP-DNEGNVWVLLYNN-KGIDKINPRTREVT  506 (758)
T ss_dssp             CEEEEEHHHHHH-----------CCSSEEECSEEECGGGTCSCSCEEEEEE-CTTSCEEEEETTC-SSEEEEETTTTEEE
T ss_pred             ceEEEccccccc-----------cCCcceecccccccccccccceeeeEEE-cCCCCEEEEccCC-CCcEEEeCCCCceE
Confidence            688888642100           000000   1111100  1123788875 888887763 444 45888898766544


Q ss_pred             EEEec---ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC
Q 023246          157 RLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  200 (285)
Q Consensus       157 ~~~~~---h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  200 (285)
                      .....   ....+.++....+|.+.+. +..| +..+++.......+
T Consensus       507 ~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~  551 (758)
T 3ott_A          507 KLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI  551 (758)
T ss_dssp             EECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC
T ss_pred             EecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe
Confidence            32111   1245778888888877544 3444 78888876655433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.97  E-value=2.5  Score=35.04  Aligned_cols=106  Identities=12%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             ceEEEEEecCCCEEEEecC-CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec----ccCceeeeeEEEecCC---Cc
Q 023246           63 HITGLAYSNTSELLISYND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG----HRNSQTVKGVNFFGPN---DE  134 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~---~~  134 (285)
                      ..+.++|.|+|+++++-.. +.|++++...+.              ...+..+..    ......+..+++ +|+   +.
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~--------------~~~~~~~~~~~~~~~g~~Gllgia~-~Pdf~~~g   92 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGS--------------VKTVFQVPEIVNDADGQNGLLGFAF-HPDFKNNP   92 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCC--------------EEEEEECTTCCCCTTSSCSEEEEEE-CTTTTTSC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc--------------EeEEecCCccccccCCCCceeEEEE-CCCcCcCC
Confidence            5679999999999998765 468888754331              001111111    011123778997 884   44


Q ss_pred             EE-EEecC------------CCeEEEEecCCC--c-----eEE-EEec-ccccceEeEEcCCCCeEEEEec
Q 023246          135 YV-MSGSD------------CGHLFIWKKKGG--K-----LVR-LMVG-DRHVVNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       135 ~l-~~~~~------------dg~v~vwd~~~~--~-----~~~-~~~~-h~~~v~~~~~~p~~~~l~t~~~  183 (285)
                      .| ++-+.            ...|.-+++...  +     .+. .+.. .......|+|.|+|.+.++.+.
T Consensus        93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            44 44332            235666665432  1     121 1221 1234688999999988666553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.23  E-value=3.1  Score=31.96  Aligned_cols=146  Identities=10%  Similarity=0.093  Sum_probs=70.5

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  142 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  142 (285)
                      .|..|+......+++ . ++.|+.|-.....                .+..-....  ..|..++. ......++  . +
T Consensus       103 ~v~~ia~G~~hs~al-~-~G~v~~wG~n~~g----------------qlg~~~~~~--~~i~~i~~-G~~~~~~l--~-~  158 (282)
T 3qhy_B          103 GVDAIAAGAWASYAL-K-DGKVIAWGDDSDG----------------QTTVPAEAQ--SGVTALDG-GVYTALAV--K-N  158 (282)
T ss_dssp             SEEEEEEETTEEEEE-E-TTEEEEEECCTTS----------------TTSCCGGGG--SSEEEEEE-CSSEEEEE--E-T
T ss_pred             CeEEEECcCCEEEEE-e-CCeEEEecCCCCC----------------cCCCCccCC--CCeEEEEc-ccCEEEEE--E-C
Confidence            566666544433333 4 8888888765431                111000111  22677765 33322222  3 6


Q ss_pred             CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEE
Q 023246          143 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRI  221 (285)
Q Consensus       143 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  221 (285)
                      |.|+.|-......+..-..-...|..++.-... .++.  .||.|..|-....-..-++. ....+..+..   .....+
T Consensus       159 G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~---G~~h~~  232 (282)
T 3qhy_B          159 GGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS---GEWYSL  232 (282)
T ss_dssp             TEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE---CSSCEE
T ss_pred             CEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc---CCCEEE
Confidence            999999765322211111112456666654332 2443  59999999764332111111 1112222221   122344


Q ss_pred             EeCCCCeEEEEEeccccc
Q 023246          222 TLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~  239 (285)
                      +.. |+.++.|-.....+
T Consensus       233 al~-~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          233 ALK-NGKVIAWGSSRTAP  249 (282)
T ss_dssp             EEE-TTEEEEESTTCCCC
T ss_pred             EEE-CCEEEEecCCCCcc
Confidence            445 99999996555433

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.23  E-value=2  Score=36.61  Aligned_cols=112  Identities=5%  Similarity=-0.085  Sum_probs=65.7

Q ss_pred             ceEEEEEecCCCEEEEe-c-CCcEEEEEcCCCCCCCCCCCCCccccCCCC-ceEeecccCceeeeeEEEecCCCcEEEEe
Q 023246           63 HITGLAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREE-PQVYSGHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      ....+.++|+|++++.+ . +.++.++|+.......    ....+..... ....+.   .......+| +++|+-..+-
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~----~~k~~~~~~~~~ae~e~---GlGPlHt~F-d~~G~aYTtl  395 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF----AGKLADPRDVIVGEPEL---GLGPLHTTF-DGRGNAYTTL  395 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH----TTCCSCGGGGEEECCBC---CSCEEEEEE-CSSSEEEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh----hccccCcccceEeeccC---CCcccEEEE-CCCCceEeee
Confidence            44568899999988875 3 9999999997421000    0000000000 111111   122567787 8999666777


Q ss_pred             cCCCeEEEEecCCC----------ceEEEEecccccceEe-----EEcCCCCeEEEEe
Q 023246          140 SDCGHLFIWKKKGG----------KLVRLMVGDRHVVNQL-----EPHPHIPMFATCG  182 (285)
Q Consensus       140 ~~dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~-----~~~p~~~~l~t~~  182 (285)
                      .-|..|..|++...          ..+..+..|.++-.-.     .-.|+|++|++..
T Consensus       396 fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          396 FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            78999999998643          3555665554332211     2257788887775

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.72  E-value=4.2  Score=32.45  Aligned_cols=158  Identities=15%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             ceEEEEEecCCCEEEEe-------------cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc--c-CceeeeeE
Q 023246           63 HITGLAYSNTSELLISY-------------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--R-NSQTVKGV  126 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~  126 (285)
                      ....+...|+|..++++             .+|.|.++|......            +.+.+ .+.+.  . ..-....+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~------------~~~~l-~~~g~~~~~~~f~PhGi  117 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP------------AVSEL-EIIGNTLDISSFNPHGI  117 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC------------CEEEC-EEECSSCCGGGCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC------------ceEEE-EccCCCCCcCceeeeee
Confidence            44567788888776665             588999999874310            00111 12221  0 01125566


Q ss_pred             EEec-CCCc--EEEEecC--CCeEEEEecCCC-ce---EEEEecc-cccceEeEEcCCCCeEEEEec-------------
Q 023246          127 NFFG-PNDE--YVMSGSD--CGHLFIWKKKGG-KL---VRLMVGD-RHVVNQLEPHPHIPMFATCGI-------------  183 (285)
Q Consensus       127 ~~~~-~~~~--~l~~~~~--dg~v~vwd~~~~-~~---~~~~~~h-~~~v~~~~~~p~~~~l~t~~~-------------  183 (285)
                      .++. .++.  ++++-..  +..|.+|++... ..   +..+.+. -...+.+++.++|.+.++...             
T Consensus       118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~  197 (355)
T 3sre_A          118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH  197 (355)
T ss_dssp             EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred             EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence            6533 2343  3444332  567788876543 22   2233322 245788999999987776541             


Q ss_pred             ----CCcEEEEcCCCCCCCCCCCCcccceeeccccCCC-ceEEEeCCCCeEEEEEecc
Q 023246          184 ----EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRED-HSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       184 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~d~~i~vwd~~~  236 (285)
                          .|.|.-++.  +.+..+........-+.+ ++++ .++++-+..+.|+.|++..
T Consensus       198 ~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~-spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          198 LGLAWSFVTYYSP--NDVRVVAEGFDFANGINI-SPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TTCCCEEEEEECT--TCCEEEEEEESSEEEEEE-CTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccCCccEEEEEEC--CeEEEeecCCcccCcceE-CCCCCEEEEEeCCCCeEEEEEECC
Confidence                234444554  222211111111222322 3333 4666777789999999874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.62  E-value=4.9  Score=31.21  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=60.8

Q ss_pred             EEEecCCCEEEEec-----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-
Q 023246           67 LAYSNTSELLISYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-  140 (285)
Q Consensus        67 i~~s~~~~~l~s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-  140 (285)
                      ..|+++++.|+-..     ...|+..++...                 ....+..+.    +  ..+ +++++.|+-.+ 
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-----------------~~~~lt~~~----~--~~~-~~~g~~iy~t~~  164 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGE-----------------EKKKIKNHY----L--FTC-NTSDRYFYYNNP  164 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSC-----------------CCEEEESSC----C--CCS-EEETTEEEEECT
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCC-----------------CeEEEeCCC----c--eEe-eEECCEEEEEeC
Confidence            36788887665432     445666666543                 334454433    2  233 55677766544 


Q ss_pred             CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC--CcEEEEcCCCCCCCCC
Q 023246          141 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLWAPMPTDFPPL  200 (285)
Q Consensus       141 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d--~~i~iwd~~~~~~~~~  200 (285)
                      ....|++.++..+.....+.+   ... ..++|++.+|+-....  ..|..-++.+.....+
T Consensus       165 g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L  222 (302)
T 3s25_A          165 KNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL  222 (302)
T ss_dssp             TTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC
T ss_pred             CCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE
Confidence            467899999886654433332   222 3456888887765533  3566667776654444

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.62  E-value=8.5  Score=33.92  Aligned_cols=66  Identities=11%  Similarity=0.149  Sum_probs=39.8

Q ss_pred             CCCcEEEEecCCC--eEEEEecCCCceEEEE-----ecccccceEeEEcCC-CCeEEEEec--C-----CcEEEEcCCCC
Q 023246          131 PNDEYVMSGSDCG--HLFIWKKKGGKLVRLM-----VGDRHVVNQLEPHPH-IPMFATCGI--E-----KTVKLWAPMPT  195 (285)
Q Consensus       131 ~~~~~l~~~~~dg--~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~~p~-~~~l~t~~~--d-----~~i~iwd~~~~  195 (285)
                      .+++.++.|+.++  .+.+||..+.+-...-     ........++.+... ++.++.|+.  +     ..+..||+.+.
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            4777888887654  6899998876533211     111222233555554 667777765  2     35888998766


Q ss_pred             C
Q 023246          196 D  196 (285)
Q Consensus       196 ~  196 (285)
                      .
T Consensus       579 ~  579 (695)
T 2zwa_A          579 N  579 (695)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.04  E-value=9.7  Score=36.63  Aligned_cols=170  Identities=8%  Similarity=0.054  Sum_probs=92.7

Q ss_pred             ccceeEEEEcCCCCcEEEEee------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC---C
Q 023246            3 SIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT---S   73 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~   73 (285)
                      +..|..-..+++..-++++|-      ..|.+.+|....+.                ...+.||......+.....   .
T Consensus       150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~----------------sQ~iegha~~F~~~~~~~~~~~~  213 (1630)
T 1xi4_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----------------SQPIEGHAASFAQFKMEGNAEES  213 (1630)
T ss_pred             cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc----------------chhhhHhHhhhheeccCCCCCCc
Confidence            445666667776544444443      35788888887553                1222555554444433221   1


Q ss_pred             CEEEEec----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEEecCCCeEEEE
Q 023246           74 ELLISYN----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        74 ~~l~s~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw  148 (285)
                      .+++-+.    .++++|.++....... ..+..      +.+..+... .......++.. ++....+..-+.-|.+++|
T Consensus       214 ~l~~f~~~~~~g~kLhi~Ei~~~~~~~-~~f~k------k~~~~~~~~~~~~Dfpv~~~v-s~k~g~iy~itk~G~~~~~  285 (1630)
T 1xi4_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGN-QPFPK------KAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLY  285 (1630)
T ss_pred             eEEEEEEecCCCceEEEEecCCCccCC-CCCcc------ccccccCCcccccCcceEEEe-ccccCEEEEEecCceEEEE
Confidence            2333232    4789999986541111 11100      111111111 11112344554 6777778888899999999


Q ss_pred             ecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          149 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       149 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      |+.++.++..-+-...+|...+-++...-++.....|.|.--.+....
T Consensus       286 d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             ecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            999999886555444555555544444446666677776666655444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.16  E-value=8.5  Score=30.56  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             ceEEEEEecCCC-EEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC----CcEEE
Q 023246           63 HITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----DEYVM  137 (285)
Q Consensus        63 ~v~~i~~s~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~  137 (285)
                      ....++|.|+|+ ++++...+.|++++......   .     .+..  ....+.....  ....+++ +|+    +.+.+
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~---~-----~~~~--~~~v~~~g~~--g~~gia~-~pdf~~~g~lYv   85 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLS---A-----PLSG--VPDVWAHGQG--GLLDVVL-APDFAQSRRIWL   85 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEEC---C-----CCBS--CCCCCCSTTC--SEEEEEE-CTTHHHHCEEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee---e-----EecC--CcccccCCCC--CceeEEE-CCCCCCCCEEEE
Confidence            467999999999 88877789999998532200   0     0000  0001111122  2678997 885    44444


Q ss_pred             EecC-------CCeEEEEecCCC--c--eEEEE-ec------ccccceEeEEcCCCCeEEEEe
Q 023246          138 SGSD-------CGHLFIWKKKGG--K--LVRLM-VG------DRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       138 ~~~~-------dg~v~vwd~~~~--~--~~~~~-~~------h~~~v~~~~~~p~~~~l~t~~  182 (285)
                      +-+.       ...|..|++...  +  ....+ ..      .......|+|.|++.+.++.+
T Consensus        86 ~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           86 SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             EEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            4322       235666766532  1  11111 11      112246799999997665554

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.10  E-value=16  Score=33.61  Aligned_cols=37  Identities=11%  Similarity=-0.052  Sum_probs=31.7

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      +.+++. .++..++++-+.|+++++|++.+++++.+..
T Consensus       238 ~~~~~~-~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          238 IISMIF-LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             EEEEEE-ETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEEee-cCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            666665 6788899999999999999999999988753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=87.86  E-value=8.1  Score=29.98  Aligned_cols=101  Identities=6%  Similarity=-0.053  Sum_probs=54.2

Q ss_pred             EecCCCcEEEEecC--------------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe----cCCcEEE
Q 023246          128 FFGPNDEYVMSGSD--------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG----IEKTVKL  189 (285)
Q Consensus       128 ~~~~~~~~l~~~~~--------------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~----~d~~i~i  189 (285)
                      ++++++.+|+-...              ...|+..++..++... +..  ..  ...|+|++++|+-..    ....|..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            34677887766544              3468888887665333 221  11  236777888877665    2345666


Q ss_pred             EcCCCCCCCCCCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEecccc
Q 023246          190 WAPMPTDFPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       190 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .++.+.....+..+..  ...   ...++ +..+.....+|++.++....
T Consensus       134 ~~~dGs~~~~lt~~~~--~~~---~~~g~~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          134 IRIDGEEKKKIKNHYL--FTC---NTSDRYFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             EETTSCCCEEEESSCC--CCS---EEETTEEEEECTTTCCEEEEETTTTE
T ss_pred             EECCCCCeEEEeCCCc--eEe---eEECCEEEEEeCCCceEEEEECCCCC
Confidence            6666554443332221  111   22223 33343335677777766543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.28  E-value=8.4  Score=29.52  Aligned_cols=183  Identities=14%  Similarity=0.112  Sum_probs=91.0

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcE
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV   84 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i   84 (285)
                      .|..++....  ..++. . ||.|..|-....-.+.     .|.          .....|..++......+++  .|+.|
T Consensus        25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg-----~p~----------~~~~~i~~ia~G~~hs~~l--~~G~v   83 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLT-----MPA----------ATQSGVDAIAAGNYHSLAL--KDGEV   83 (282)
T ss_dssp             SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTS-----CCG----------GGGSCCCEEEECSSEEEEE--ETTEE
T ss_pred             CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCC-----CCc----------cCCCCEEEEEeCCCEEEEE--ECCEE
Confidence            4667776653  34444 4 8999999865432110     000          0122455665544333333  38999


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      +.|-........             ....+   ..  .|..++. ......+  -. +|.|+.|-....-.+........
T Consensus        84 ~~wG~n~~Gqlg-------------~P~~~---~~--~v~~ia~-G~~hs~a--l~-~G~v~~wG~n~~gqlg~~~~~~~  141 (282)
T 3qhy_B           84 IAWGGNEDGQTT-------------VPAEA---RS--GVDAIAA-GAWASYA--LK-DGKVIAWGDDSDGQTTVPAEAQS  141 (282)
T ss_dssp             EEEECCTTSTTC-------------CCGGG---SS--SEEEEEE-ETTEEEE--EE-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred             EEeeCCCCCCCC-------------CCccc---CC--CeEEEEC-cCCEEEE--Ee-CCeEEEecCCCCCcCCCCccCCC
Confidence            999876441100             00000   11  2777775 4333333  34 89999997654222111111234


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCC-cccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN-AEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      .|..++.-.... ++ -. ||.|..|-....-....+.. ...+..+..   .....++. .+|.++.|-....
T Consensus       142 ~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~---G~~hs~al-~~G~v~~wG~n~~  208 (282)
T 3qhy_B          142 GVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAG---GIFHSLAL-KDGKVIAWGDNRY  208 (282)
T ss_dssp             SEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE---CSSEEEEE-ETTEEEEEECCTT
T ss_pred             CeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEe---cCCEEEEE-ECCeEEEEECCCC
Confidence            566666543322 22 23 79999997643221111111 122333322   12233444 6999999976554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.13  E-value=9.9  Score=30.21  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=61.6

Q ss_pred             cceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe----ecccCceeeeeEEEecCC----
Q 023246           62 IHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPN----  132 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~----  132 (285)
                      ...+.++|.|+|.++++-. .|.|++++...+.              ...+..+    ....  .....+++ +|+    
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~--------------~~~v~~~~~v~~~g~--~GllGia~-~Pdf~~~   94 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR--------------KTELGEVPGVSPSGE--GGLLGIAL-SPDYASD   94 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--------------EEEEEECTTCCCBTT--BSEEEEEE-CTTHHHH
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCc--------------EeeecccCceeecCC--CCceeeEe-ccccccC
Confidence            3578999999999999976 8999998765431              0011111    1112  23788997 885    


Q ss_pred             CcEEEE--ecCCCeEEEEecCCC----------ceE-EEEe-cccccceEeEEcCCCCeEEEEe
Q 023246          133 DEYVMS--GSDCGHLFIWKKKGG----------KLV-RLMV-GDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       133 ~~~l~~--~~~dg~v~vwd~~~~----------~~~-~~~~-~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                      +.+.++  ...++.|.-|.+..+          +.+ ..+. .....-..|+|.|++.+.++.+
T Consensus        95 g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           95 HMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             CEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            433332  234566776765541          112 2232 1122356799999998877755

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.37  E-value=17  Score=30.27  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             ceEEEEEecCCC--EEEEecCCcEEEEEcC
Q 023246           63 HITGLAYSNTSE--LLISYNDELVYLFEKN   90 (285)
Q Consensus        63 ~v~~i~~s~~~~--~l~s~~d~~i~iwd~~   90 (285)
                      ..+.|+|.|+|.  +|++-..|.|++++..
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            467899999995  8888779999999753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.35  E-value=23  Score=31.16  Aligned_cols=146  Identities=14%  Similarity=0.183  Sum_probs=73.3

Q ss_pred             cEEEEeeCC------CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec--CCcEEEE
Q 023246           17 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN--DELVYLF   87 (285)
Q Consensus        17 ~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~--d~~i~iw   87 (285)
                      .+++.|+.+      ..+.+||..+.+....-.         ...-...|     +++...++++++. |.  ++.+.+|
T Consensus       453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~---------~p~~R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~y  518 (695)
T 2zwa_A          453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS---------LSHTRFRH-----SACSLPDGNVLILGGVTEGPAMLLY  518 (695)
T ss_dssp             EEEEECCBSSTTCBCCCCEEEETTTTEEEECCC---------CSBCCBSC-----EEEECTTSCEEEECCBCSSCSEEEE
T ss_pred             EEEEEcCCCCCCCccccEEEEeCCCCcEEECCC---------CCCCcccc-----eEEEEcCCEEEEECCCCCCCCEEEE
Confidence            677777754      357788887765321100         00000111     2222236676665 43  2379999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeec------ccCceeeeeEEEecCC-CcEEEEecC--C-----CeEEEEecCCC
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSG------HRNSQTVKGVNFFGPN-DEYVMSGSD--C-----GHLFIWKKKGG  153 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~-~~~l~~~~~--d-----g~v~vwd~~~~  153 (285)
                      |..+.                 ....+..      ....  ..++.+ ..+ ++.++.|+.  +     ..+.+||+.+.
T Consensus       519 d~~t~-----------------~W~~~~~~g~~p~~r~~--~~a~v~-~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          519 NVTEE-----------------IFKDVTPKDEFFQNSLV--SAGLEF-DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             ETTTT-----------------EEEECCCSSGGGGSCCB--SCEEEE-ETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             ECCCC-----------------ceEEccCCCCCCCcccc--eeEEEE-eCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            98765                 1122211      1111  233443 444 667777765  2     46889998877


Q ss_pred             ce-----EEEEec----ccccceEeEEcCCCCeEEEEecC--------CcEEEEcCCCCCC
Q 023246          154 KL-----VRLMVG----DRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPTDF  197 (285)
Q Consensus       154 ~~-----~~~~~~----h~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~~~  197 (285)
                      +-     -..+..    ..... +++...++++++.|+.+        ..+.+||+.+...
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             ccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            61     112211    11111 22233336677777643        3588888876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 4e-13
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 25/182 (13%)

Query: 15  NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC------PRHLIGKNNIHITGLA 68
           +    A   +D+  RV+ +      + +     V              I +     T  +
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213

Query: 69  YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 128
                 LL    D+ + +++ + G                       GH N   V+GV  
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTG----------------MCLMTLVGHDNW--VRGV-L 254

Query: 129 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 188
           F    ++++S +D   L +W  K  + ++ +    H V  L+ H   P   T  +++TVK
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314

Query: 189 LW 190
           +W
Sbjct: 315 VW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 107 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 166
           +  E    SGHR+   V  V F  P    ++S S+   + +W  + G   R + G    V
Sbjct: 6   RPPEKYALSGHRSP--VTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 167 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 226
             +       + A+C  + T+KLW     +        +  + +          ++ + D
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 227 VIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSD 268
             + +  +Q    +                ++G       +D
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 19/150 (12%), Positives = 55/150 (36%), Gaps = 35/150 (23%)

Query: 1   MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN 60
           ++    +      +   +   G  D+  +++D+                  C   L+G +
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--------------CLMTLVGHD 247

Query: 61  NIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN 119
           N  + G+ + +  + ++S  +D+ + ++                D + +   +  + H +
Sbjct: 248 N-WVRGVLFHSGGKFILSCADDKTLRVW----------------DYKNKRCMKTLNAHEH 290

Query: 120 SQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 149
              V  ++F      YV++GS    + +W+
Sbjct: 291 F--VTSLDF-HKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 13  PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 72
           P +  Y A G  D   RV+D         + S+    T             +  + ++  
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS--------VYSVVFTRD 265

Query: 73  SELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 131
            + ++S   D  V L+        S                  +   +   V  V     
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSD------SKTPNSGTCEVTYIGHKDFVLSV-ATTQ 318

Query: 132 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV------NQLEPHPHIPMFATCGIEK 185
           NDEY++SGS    +  W KK G  + ++ G R+ V      N     P   +FAT   + 
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378

Query: 186 TVKLW 190
             ++W
Sbjct: 379 KARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 3e-06
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 24/147 (16%)

Query: 7   NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 66
            ++V    +      G  D   ++++++  +     S     ++         +   +  
Sbjct: 258 YSVVFTR-DGQSVVSGSLDRSVKLWNLQNANN---KSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 67  LAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT--- 122
           +A +   E ++S   D  V  +                D +      +  GHRNS     
Sbjct: 314 VATTQNDEYILSGSKDRGVLFW----------------DKKSGNPLLMLQGHRNSVISVA 357

Query: 123 VKGVNFFGPNDEYVMSGSDCGHLFIWK 149
           V   +  GP      +GS      IWK
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWK 384

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 33/175 (18%)

Query: 17  NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 76
             F  G  D  A+++D+R+                C +   G  +  I  + +       
Sbjct: 197 RLFVSGACDASAKLWDVREGM--------------CRQTFTGHES-DINAICFFPNGNAF 241

Query: 77  IS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 135
            +  +D    LF+                    +E   YS       +  V+F   +   
Sbjct: 242 ATGSDDATCRLFDLRA----------------DQELMTYSHDNIICGITSVSF-SKSGRL 284

Query: 136 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 190
           +++G D  +  +W         ++ G  + V+ L         AT   +  +K+W
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 129 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 188
           F    ++ +S      L  W+   G  +     +   V   +         T   +K   
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 189 LW 190
           ++
Sbjct: 332 VY 333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 129 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKT 186
           +  +   +    +   + I++K G K V++     H   V  ++  P      TCG ++ 
Sbjct: 15  WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74

Query: 187 VKLWAPMP 194
             +W    
Sbjct: 75  AYVWTLKG 82

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK-KKGGKLVRLMVGDRHVVNQLEPHPHI 175
                  KG N     ++ V +GS   ++FI+  K+  K+++ +   +  VN L      
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 176 PMFATCGIEKTVKLW 190
               + G +  +K W
Sbjct: 270 STLVSSGADACIKRW 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 104 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 163
              + + P+V  GH +      +         ++SGSD   L +W    GK +R +VG  
Sbjct: 2   RRGELKSPKVLKGHDDH----VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 164 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 194
             V   +   +I +  +      V       
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 104 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 163
           D +         GH N            +  +V+SGS    + +W  + G  +  + G +
Sbjct: 163 DPETETCLHTLQGHTNRV-----YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217

Query: 164 HVVNQLEPHPHIPMFATCGIEKTVKLW 190
            + + +E   +  +  +   + TVK+W
Sbjct: 218 SLTSGMELKDN--ILVSGNADSTVKIW 242

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 131 PNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 189
           P+   + S S    + IW     K+ + + VG R    QL          +      +  
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 190 WAP 192
             P
Sbjct: 308 VNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 19/102 (18%)

Query: 63  HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT 122
               L  +   + +   N   VY                   +    + ++Y+ H +   
Sbjct: 19  TAVVLGNTPAGDKIQYCNGTSVYTV----------------PVGSLTDTEIYTEHSHQ-- 60

Query: 123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 164
                   P+  Y  SG   G++ IW       +        
Sbjct: 61  TTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 101

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHI 175
             +   +  +  F  +D  ++SGS+     I+  + GKLV   ++ D   +  +      
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 176 PMFATCGIEKTVKLW 190
            + A    +    L 
Sbjct: 337 -LVAAVEKDGQSFLE 350

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 117 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 176
           H  S+T KGV     +D+ ++SG     + IW K   +  R++ G    V  L+    + 
Sbjct: 9   HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 177 MFATC 181
           +  + 
Sbjct: 69  ITGSS 73

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 22/184 (11%), Positives = 53/184 (28%), Gaps = 12/184 (6%)

Query: 15  NPNYFAVGGSDEYARVYDIR--------KCHWYSPISSDTPVDTFCPRHLIGKNNIHITG 66
           +      G  D   +++D            H  S +                   +    
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 67  LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 126
                 + +        +      M       S++  D+    +  +       +    V
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 127 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKT 186
             F  +D+Y++S S    + +W     + VR + G +  +  L+      +  +   + T
Sbjct: 144 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNT 199

Query: 187 VKLW 190
           ++LW
Sbjct: 200 IRLW 203

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 104 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW---------KKKGGK 154
           D++     +V  GH              +++ ++SG+  G + +W            G  
Sbjct: 204 DIECGACLRVLEGHEELV-----RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258

Query: 155 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 190
            +R +V     V +L+         +   + T+ +W
Sbjct: 259 CLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 7/46 (15%), Positives = 18/46 (39%)

Query: 104 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 149
           D+   +  Q ++  +     + V      +  ++S S  G L  ++
Sbjct: 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/187 (6%), Positives = 40/187 (21%), Gaps = 10/187 (5%)

Query: 12  DPRNPNYFAVGGSDEYARVYDI---RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA 68
           D    +            ++             ++    ++           +   T + 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 69  YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 128
            S    +   +N+  V + E +        +   +         + S   + Q       
Sbjct: 192 ISERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 129 FGPNDEYVMSGSDCGHL-----FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 183
              N    ++  +                 +           V  L  +       + G 
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309

Query: 184 EKTVKLW 190
           +  ++ W
Sbjct: 310 DGKLRFW 316

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 127 NFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH---VVNQLEPHPHIPMFATCGI 183
             + P++  + +GS    + +W         +++   H    VN +          + G 
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQ 288

Query: 184 EKTVKLW 190
           +  +K W
Sbjct: 289 DSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 112 QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLE 170
           QV  GH  +  +  ++    + + + S    GH+  W    G   R        ++  ++
Sbjct: 6   QVRYGHNKA--ITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 171 PHPHIPMFATCGIEKTVKLWA 191
                 +F     +    + A
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPA 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.75
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.6
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.48
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.39
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.36
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.07
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.98
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.76
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.6
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.6
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.59
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.59
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.12
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.16
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.35
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.2
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.86
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.06
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.28
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.54
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.45
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.72
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.6
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.49
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.0
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.69
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.57
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.06
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.14
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.86
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.83

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-34  Score=227.44  Aligned_cols=208  Identities=14%  Similarity=0.209  Sum_probs=174.6

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--   80 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--   80 (285)
                      ...|++++|+|++ ++||+|+.||+|+|||+.+++.             .....+..|..+|.+++|+|++++|++++  
T Consensus        58 ~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~  123 (311)
T d1nr0a1          58 SHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH-------------ILKTTIPVFSGPVKDISWDSESKRIAAVGEG  123 (311)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC-------------CEEEEEECSSSCEEEEEECTTSCEEEEEECC
T ss_pred             CCCEEEEEEeCCC-CeEeccccCceEeeeeeecccc-------------ccccccccccCcccccccccccccccccccc
Confidence            5789999999975 8999999999999999987752             12222367899999999999999888753  


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE-EEEecCCCeEEEEecCCCceEEE
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~  158 (285)
                       +..+++|+..++                +....+.+|...  |.+++| +|++++ +++|+.|+.|++||+++++....
T Consensus       124 ~~~~~~v~~~~~~----------------~~~~~l~~h~~~--v~~v~~-~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~  184 (311)
T d1nr0a1         124 RERFGHVFLFDTG----------------TSNGNLTGQARA--MNSVDF-KPSRPFRIISGSDDNTVAIFEGPPFKFKST  184 (311)
T ss_dssp             SSCSEEEEETTTC----------------CBCBCCCCCSSC--EEEEEE-CSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred             ccccccccccccc----------------cccccccccccc--cccccc-cccceeeecccccccccccccccccccccc
Confidence             566999999887                577778888866  999997 898875 78899999999999999999999


Q ss_pred             EecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC--------CCCCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          159 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      +..|...|++++|+|+++++++++.|+.|++||++.+..        ....+|...+..+.+ .+++.++++++.|+.|+
T Consensus       185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-s~~~~~l~tgs~Dg~v~  263 (311)
T d1nr0a1         185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW-SPDGTKIASASADKTIK  263 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE-CTTSSEEEEEETTSEEE
T ss_pred             cccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc-CCCCCEEEEEeCCCeEE
Confidence            999999999999999999999999999999999876531        233456777766655 55677999999999999


Q ss_pred             EEEecccccceeEe
Q 023246          231 VLRLQRRQTLAYRE  244 (285)
Q Consensus       231 vwd~~~~~~~~~~~  244 (285)
                      +||+++++.+..+.
T Consensus       264 iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         264 IWNVATLKVEKTIP  277 (311)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEECCCCcEEEEEE
Confidence            99999887766553

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=225.07  Aligned_cols=227  Identities=12%  Similarity=0.087  Sum_probs=176.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +..+|++++|+|++ .+||+|+ ||.|+|||+.+......          .......+|...|.+++|+|++++|+++ .
T Consensus        50 H~~~V~~v~fs~~g-~~latg~-dg~V~iWd~~~~~~~~~----------~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~  117 (337)
T d1gxra_          50 HGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSP----------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             CSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSC----------SEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             CCCcEEEEEECCCC-CEEEEEE-CCEEEEEEccCCcccce----------eEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence            35789999999976 8999987 89999999987652211          1112225789999999999999999886 5


Q ss_pred             CCcEEEEEcCCCCCC----------------------------CCCCCCCccccCCCCceEeecccCceeeeeEEEecCC
Q 023246           81 DELVYLFEKNMGLGP----------------------------SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  132 (285)
Q Consensus        81 d~~i~iwd~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (285)
                      |+.|++||+......                            ....+...++...+.......|...  +.+++| +++
T Consensus       118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--v~~l~~-s~~  194 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG--ASCIDI-SND  194 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEE-CTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc-ccc
Confidence            999999998754300                            0011111223344445555666655  999997 999


Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeecc
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK  212 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  212 (285)
                      ++++++++.|+.+++||+++++.+..+. |...|.+++|+|++++|++++.|+.+++||++.........|...+..+.+
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~  273 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF  273 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE
T ss_pred             ccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccccccccceEEE
Confidence            9999999999999999999999887765 788999999999999999999999999999988876666667777766654


Q ss_pred             ccCCCceEEEeCCCCeEEEEEecccccceeEee
Q 023246          213 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRER  245 (285)
Q Consensus       213 ~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~  245 (285)
                       .+++.++++++.|+.|++||+..++.+....+
T Consensus       274 -s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  305 (337)
T d1gxra_         274 -AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  305 (337)
T ss_dssp             -CTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             -CCCCCEEEEEeCCCeEEEEECCCCCEEEEccC
Confidence             55667899999999999999998876655443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8e-33  Score=220.92  Aligned_cols=212  Identities=11%  Similarity=0.132  Sum_probs=172.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      +.++|++++|+|++ .+||+|+.||+|+|||+.+++              ....+ ..|..+|.+++|+|++.+++++ .
T Consensus        54 H~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~~~--------------~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~  117 (340)
T d1tbga_          54 HLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTN--------------KVHAI-PLRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--------------EEEEE-ECSCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCEEEEEECCCC-CEEEEEECCCceeeeecccce--------------eEEEE-ecccccEEeeEeeccceeeeeecc
Confidence            35789999999975 899999999999999999886              33333 6789999999999999999886 5


Q ss_pred             CCcEEEEEcCCCCCCCC---------------------------------------------------------------
Q 023246           81 DELVYLFEKNMGLGPSP---------------------------------------------------------------   97 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~---------------------------------------------------------------   97 (285)
                      |+.+.+|+.........                                                               
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            99999999765431100                                                               


Q ss_pred             --------CCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe--cccccce
Q 023246           98 --------LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVN  167 (285)
Q Consensus        98 --------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~  167 (285)
                              ..+..+++.+.+.+..+.+|...  |.+++| +|++++|++|+.||.|++||++..+.+..+.  .|...|.
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~--i~~v~~-~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFTGHESD--INAICF-FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEeCCCCC--eEEEEE-CCCCCEEEEEeCCCeEEEEeecccccccccccccccCceE
Confidence                    01111123444556677778866  999997 9999999999999999999999888877664  4667899


Q ss_pred             EeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          168 QLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       168 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      +++|+|++++|++|+.||.|++||+..++ +..+.+|...+..+.+ .+++.++++++.||.|++||
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~-s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE-eCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999998776 4667888888877765 55677899999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-32  Score=222.37  Aligned_cols=210  Identities=12%  Similarity=0.158  Sum_probs=163.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ...||+|++|+|++ .+||+|+.||.|+|||+.+++.             .....+.+|.++|++++|+|++++|+++ .
T Consensus         6 ~~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~-------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKW-------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEE-------------EEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCE-------------EEEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            35789999999986 8999999999999999987652             1222237899999999999999999986 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE----
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV----  156 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----  156 (285)
                      |++|+|||+....              ......+..|...  |.+++| +|+++++++++.|+.+++|++......    
T Consensus        72 D~~i~vWd~~~~~--------------~~~~~~~~~~~~~--v~~i~~-~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          72 DRNAYVWTLKGRT--------------WKPTLVILRINRA--ARCVRW-APNEKKFAVGSGSRVISICYFEQENDWWVCK  134 (371)
T ss_dssp             TSCEEEEEEETTE--------------EEEEEECCCCSSC--EEEEEE-CTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeecccc--------------ccccccccccccc--cccccc-ccccccceeecccCcceeeeeeccccccccc
Confidence            9999999997651              0123344556655  999997 999999999999999999998765532    


Q ss_pred             EEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-------------------CCCCCcccceeeccccCCC
Q 023246          157 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-------------------PLPDNAEKIMKANKQGRED  217 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  217 (285)
                      .....|...|.+++|+|++++|++++.|++|++|++......                   ....|...+..+.+ .+++
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g  213 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SANG  213 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE-CSSS
T ss_pred             ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe-eccc
Confidence            334568899999999999999999999999999998644311                   12234444444443 4556


Q ss_pred             ceEEEeCCCCeEEEEEecccccceeE
Q 023246          218 HSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       218 ~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ..+++++.|+.|++||+.+++.+..+
T Consensus       214 ~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         214 SRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             SEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccccccccCCcceEEeeecccceeee
Confidence            78899999999999999887665443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-31  Score=207.94  Aligned_cols=222  Identities=10%  Similarity=0.095  Sum_probs=165.7

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecC
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND   81 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d   81 (285)
                      +..+|++++|+|++ .+|++|+.||+|++||+.+++              ....+...|...|++++|+|++++++++.|
T Consensus        11 H~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~--------------~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d   75 (299)
T d1nr0a2          11 HNKAITALSSSADG-KTLFSADAEGHINSWDISTGI--------------SNRVFPDVHATMITGIKTTSKGDLFTVSWD   75 (299)
T ss_dssp             CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC--------------EEECSSCSCSSCEEEEEECTTSCEEEEETT
T ss_pred             CCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------------EEEEEcCCCCCcEEEEEeeccceeecccce
Confidence            35789999999985 899999999999999999887              444444679999999999999998888999


Q ss_pred             CcEEEEEcCCCCCCCCCCCCC---cc------ccCCC--------CceEee-----cccCceeeeeEEEecCCCcEEEEe
Q 023246           82 ELVYLFEKNMGLGPSPLSLSP---ED------LQKRE--------EPQVYS-----GHRNSQTVKGVNFFGPNDEYVMSG  139 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~---~~------~~~~~--------~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~  139 (285)
                      +.+++|+..............   ..      .+...        .+..+.     .......+.+++| +|+++++++|
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g  154 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL-SNDKQFVAVG  154 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE-CTTSCEEEEE
T ss_pred             eeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            999999986542111100000   00      00000        001110     0000112677887 9999999999


Q ss_pred             cCCCeEEEEecCCCceEE-EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC----CCCCCCCcccceeecccc
Q 023246          140 SDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQG  214 (285)
Q Consensus       140 ~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~  214 (285)
                      +.||.|++||+++++... ....|...|.+++|+|++++|++++.|+.|++||+..+.    ...+..|...+..+.+ .
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-s  233 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW-S  233 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE-C
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            999999999998776543 345688999999999999999999999999999986553    3455667777777654 5


Q ss_pred             CCCceEEEeCCCCeEEEEEecccccc
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      +++.++++++.|+.|++||+.+....
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccceEEEcCCCEEEEEECCCCCcc
Confidence            56779999999999999999876543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-31  Score=211.32  Aligned_cols=234  Identities=8%  Similarity=0.038  Sum_probs=186.1

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      .|+.+..++++|++ +.|+.+. ++.|.+||+.+.+              ... .+.+|...|++++|+|+|++|+++ .
T Consensus        16 ~r~~~~~~a~~~~g-~~l~~~~-~~~v~i~~~~~~~--------------~~~-~~~~H~~~v~~~~~sp~g~~latg~~   78 (311)
T d1nr0a1          16 ARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLT--------------DTE-IYTEHSHQTTVAKTSPSGYYCASGDV   78 (311)
T ss_dssp             CTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSS--------------CCE-EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCeEEEEEcCCC-CEEEEEe-CCEEEEEECCCCc--------------eeE-EEcCCCCCEEEEEEeCCCCeEecccc
Confidence            35667789999986 7777764 6779999998775              222 237899999999999999999996 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC--CCeEEEEecCCCceEEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--CGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~v~vwd~~~~~~~~~  158 (285)
                      |++|++||+....              ......+..|...  |.+++| +|+++++++++.  +..+++|++++++....
T Consensus        79 dg~i~iwd~~~~~--------------~~~~~~~~~~~~~--v~~v~~-s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~  141 (311)
T d1nr0a1          79 HGNVRIWDTTQTT--------------HILKTTIPVFSGP--VKDISW-DSESKRIAAVGEGRERFGHVFLFDTGTSNGN  141 (311)
T ss_dssp             TSEEEEEESSSTT--------------CCEEEEEECSSSC--EEEEEE-CTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             CceEeeeeeeccc--------------cccccccccccCc--cccccc-ccccccccccccccccccccccccccccccc
Confidence            9999999998761              0122457778766  999997 999999998875  45699999999999999


Q ss_pred             EecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          159 MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      +.+|...|.+++|+|++++ |++|+.|+.|++||+++.+. ..+..|...+..+.+ .++..++++++.|+.+++||+..
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~-~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY-NPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccccccceeeeccccccccccccccccccccccccccccccccccc-Ccccccccccccccccccccccc
Confidence            9999999999999999986 88999999999999987763 455567777766654 45677899999999999999876


Q ss_pred             cccce-----------------eEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          237 RQTLA-----------------YRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       237 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      .....                 .+.+++++..+..+..++.|++++...+.
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            54322                 23556667777777777888888877654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.5e-30  Score=200.70  Aligned_cols=234  Identities=15%  Similarity=0.254  Sum_probs=188.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-c
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N   80 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~   80 (285)
                      ++++|++++|+|++ ++||||+.||+|+|||+.+++              ....+ .+|...|.+++|+|++.+++++ .
T Consensus        16 H~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~~~--------------~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          16 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--------------FERTL-KGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCC--------------CCEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCC--------------EEEEE-eCCCCcEEEEeeeccccccccccc
Confidence            45789999999985 899999999999999999886              33333 7899999999999999999885 5


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++.+.+|+....                +....+..|...  +.++.+ +++++.+++++.|+.+++||+++++.+..+.
T Consensus        80 ~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  140 (317)
T d1vyhc1          80 DMTIKLWDFQGF----------------ECIRTMHGHDHN--VSSVSI-MPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  140 (317)
T ss_dssp             TSCCCEEETTSS----------------CEEECCCCCSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccc----------------cccccccccccc--ceeeec-cCCCceEEeeccCcceeEeecccceeeeEEc
Confidence            899999998776                455666677765  888887 9999999999999999999999999999999


Q ss_pred             cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeecccc-------------------CCCceE
Q 023246          161 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQG-------------------REDHSR  220 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~-------------------~~~~~~  220 (285)
                      +|...+.+++|+|++.+|++++.|+.|++|++..... ..+..+...+..+.+..                   .....+
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (317)
T d1vyhc1         141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  220 (317)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCcee
Confidence            9999999999999999999999999999999987653 33444444433332211                   123478


Q ss_pred             EEeCCCCeEEEEEecccccceeE----------eeeccccccCCCCCcCeEEEeecCCCC
Q 023246          221 ITLTPDVIMHVLRLQRRQTLAYR----------ERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       221 ~~~s~d~~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ++++.|+.|++|++++++.+..+          ...+++..+.....++.|.+++...+.
T Consensus       221 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         221 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             EeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence            89999999999999887654432          455666677777777888888877654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-29  Score=204.87  Aligned_cols=247  Identities=13%  Similarity=0.218  Sum_probs=181.4

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCccc---ccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT---FCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      +...|+|++|+|++ .+||+|+ |++|+|||+.+++....+........   .........|...|++++|+|++++|++
T Consensus        61 H~~~V~~l~fs~dg-~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          61 HTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEEECCCC-CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            35789999999986 8999987 89999999998876544332211100   0111222568889999999999999998


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                      + .|+.|++|+...+                +....+.+|...  |.++.+ ++++..+++++.++.+++||.++.....
T Consensus       139 ~~~dg~v~i~~~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         139 GAEDRLIRIWDIENR----------------KIVMILQGHEQD--IYSLDY-FPSGDKLVSGSGDRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             EETTSCEEEEETTTT----------------EEEEEECCCSSC--EEEEEE-CTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccc----------------cccccccccccc--cccccc-ccccccccccccceeeeeeecccccccc
Confidence            6 5999999999887                677788888876  999997 9999999999999999999999888887


Q ss_pred             EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC--------CCCCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246          158 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       158 ~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                      ....+...+....+.+++.+|++++.|+.|++|+.+.+..        ....+|...+..+.+ .+++.++++++.|+.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE-CTTSSEEEEEETTSEE
T ss_pred             ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE-CCCCCEEEEEECCCcE
Confidence            7776655554444455788999999999999999976642        123346666666654 4566789999999999


Q ss_pred             EEEEecccccc----------------------eeEeeeccccccCCCCCcCeEEEeecCCCC
Q 023246          230 HVLRLQRRQTL----------------------AYRERRYNAADFESDEEEGETYLLGFSDSD  270 (285)
Q Consensus       230 ~vwd~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  270 (285)
                      ++||++.....                      ..+.+.+++..+..+..++.|++++...++
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99998764322                      223455666677777777888888877654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.8e-30  Score=202.70  Aligned_cols=215  Identities=13%  Similarity=0.141  Sum_probs=167.2

Q ss_pred             ccceeEEEEcCC-CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec
Q 023246            3 SIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN   80 (285)
Q Consensus         3 ~~~v~~~~~s~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~   80 (285)
                      ...|++++|+|+ ++.+||+|+.||+|+|||+..++.......       ........|.++|.+++|+++++++++ +.
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~-------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV-------NVKSEFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE-------EEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec-------ccccccccccCcEEEEEECCCCCccceeec
Confidence            357999999984 347999999999999999987653221110       111122568889999999999998776 32


Q ss_pred             --CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcE-EEEecCCCeEEEEecCCCceEE
Q 023246           81 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        81 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                        ++.+++|+..++                +.+..+.+|...  |.+++| ++++.+ +++++.|+.+++||..+.+...
T Consensus       136 ~~~~~~~~~~~~~~----------------~~~~~~~~h~~~--v~~~~~-~~~~~~~~~~~~~d~~v~~~d~~~~~~~~  196 (325)
T d1pgua1         136 GRDNFGVFISWDSG----------------NSLGEVSGHSQR--INACHL-KQSRPMRSMTVGDDGSVVFYQGPPFKFSA  196 (325)
T ss_dssp             CSSCSEEEEETTTC----------------CEEEECCSCSSC--EEEEEE-CSSSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred             cccceEEEEeeccc----------------ccceeeeecccc--cccccc-cccccceEEEeecccccccccccccccce
Confidence              778999999877                678888888876  999997 888765 6789999999999998887766


Q ss_pred             EEe---cccccceEeEEcCC-CCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccc--cCCCceEEEeCCCCeEE
Q 023246          158 LMV---GDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ--GREDHSRITLTPDVIMH  230 (285)
Q Consensus       158 ~~~---~h~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~s~d~~i~  230 (285)
                      .+.   .|...|.+++|+|+ +.+|++++.|+.|++||+++++. ..+.+|...+....+.  .+++.++++++.|+.|+
T Consensus       197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR  276 (325)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEE
Confidence            654   56778999999996 57799999999999999987763 5566666555333222  24567899999999999


Q ss_pred             EEEecccccceeE
Q 023246          231 VLRLQRRQTLAYR  243 (285)
Q Consensus       231 vwd~~~~~~~~~~  243 (285)
                      +||+++++.+..+
T Consensus       277 iwd~~~~~~~~~~  289 (325)
T d1pgua1         277 VWDVTTSKCVQKW  289 (325)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            9999988766554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-29  Score=202.00  Aligned_cols=205  Identities=17%  Similarity=0.264  Sum_probs=159.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|++++|+|++ .+|++|+.||.|++||...++              ..... .+|...|.++.|++++..++++ .+
T Consensus       121 ~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         121 DLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRK--------------IVMIL-QGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             CCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEECCCC-Ccceecccccccccccccccc--------------ccccc-ccccccccccccccccccccccccc
Confidence            3569999999975 899999999999999998876              22222 6899999999999999888875 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe-
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-  160 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-  160 (285)
                      +.+++||..+.                ........+..   ...+.++.+++++|++++.|+.|++||.++++.+..+. 
T Consensus       185 ~~i~~~d~~~~----------------~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~  245 (388)
T d1erja_         185 RTVRIWDLRTG----------------QCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS  245 (388)
T ss_dssp             SEEEEEETTTT----------------EEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred             eeeeeeecccc----------------ccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc
Confidence            99999999876                44444444433   45555557789999999999999999999988776653 


Q ss_pred             ------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC-------------CCCCcccceeeccccCCCceEE
Q 023246          161 ------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-------------LPDNAEKIMKANKQGREDHSRI  221 (285)
Q Consensus       161 ------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  221 (285)
                            +|...|.+++|+|++++|++++.|+.|++||++......             ...|...+..+.+ .+++.+++
T Consensus       246 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~  324 (388)
T d1erja_         246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-TQNDEYIL  324 (388)
T ss_dssp             -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE-CGGGCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE-CCCCCEEE
Confidence                  578899999999999999999999999999987654211             1123344444443 45667899


Q ss_pred             EeCCCCeEEEEEecccccceeE
Q 023246          222 TLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      +++.||.|++||+++++.+..+
T Consensus       325 sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         325 SGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEE
Confidence            9999999999999988776655

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-28  Score=192.98  Aligned_cols=195  Identities=16%  Similarity=0.286  Sum_probs=166.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...+.++.|+|++ ..+++++.|+.+++||+.+++              ....+ .+|...+.+++|+|++.+|+++ .|
T Consensus       101 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1         101 DHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGY--------------CVKTF-TGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCC--------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccceeeeccCCC-ceEEeeccCcceeEeecccce--------------eeeEE-ccCCCcceeeecccCCCEEEEEeCC
Confidence            4578889999975 899999999999999999876              22222 6788999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC--------------------CcEEEEecC
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--------------------DEYVMSGSD  141 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~l~~~~~  141 (285)
                      +.|++|+....                +....+..+...  +..+.+ +++                    +.++++++.
T Consensus       165 ~~v~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         165 QTVRVWVVATK----------------ECKAELREHRHV--VECISW-APESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             SCEEEEETTTC----------------CEEEEECCCSSC--EEEEEE-CCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             CeEEEEeeccc----------------eeeEEEecCCCC--ceEEEE-eeccccceeeccccceeeeeccCCceeEeccC
Confidence            99999999887                566777777755  777775 554                    347899999


Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceE
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSR  220 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  220 (285)
                      |+.|++||+++++++..+.+|...|.+++|+|++++|++++.||.|++||+++++ +..+.+|...+..+.+ .+++.++
T Consensus       226 d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~-s~~~~~l  304 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-HKTAPYV  304 (317)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-CSSSSCE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE-cCCCCEE
Confidence            9999999999999999999999999999999999999999999999999998776 4667778888877755 5567789


Q ss_pred             EEeCCCCeEEEEE
Q 023246          221 ITLTPDVIMHVLR  233 (285)
Q Consensus       221 ~~~s~d~~i~vwd  233 (285)
                      ++++.|++|++||
T Consensus       305 ~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         305 VTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEETTSEEEEEC
T ss_pred             EEEeCCCeEEEeC
Confidence            9999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-28  Score=196.51  Aligned_cols=194  Identities=14%  Similarity=0.137  Sum_probs=162.1

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|.+++|+|++ .++++++.|+.|++|++.+++.              .... ..|...|.+++|++++.+++++ .|
T Consensus       141 ~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~--------------~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d  204 (337)
T d1gxra_         141 APACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL--------------VRQF-QGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------EEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccc-cccccccccccccccccccccc--------------cccc-ccccccccccccccccccccccccc
Confidence            4578899999975 8999999999999999998752              2222 6788999999999999988886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.+++||+.++                +.+..+. +...  |.+++| +|+++++++++.|+.+++||+++++.. ....
T Consensus       205 ~~v~i~d~~~~----------------~~~~~~~-~~~~--i~~l~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~  263 (337)
T d1gxra_         205 NTVRSWDLREG----------------RQLQQHD-FTSQ--IFSLGY-CPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL  263 (337)
T ss_dssp             SEEEEEETTTT----------------EEEEEEE-CSSC--EEEEEE-CTTSSEEEEEETTSCEEEEETTSSCEE-EECC
T ss_pred             ccccccccccc----------------eeecccc-cccc--eEEEEE-cccccccceeccccccccccccccccc-cccc
Confidence            99999999877                4555443 4544  999997 999999999999999999999987765 4567


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      |...|.+++|+|++++|++++.|+.|++||+..++......|...+..+.+ .++++++++++.|+.|++||+
T Consensus       264 ~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI-SVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE-CTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEE-eCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999999999999999988775433446666766654 456778999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=196.13  Aligned_cols=212  Identities=16%  Similarity=0.211  Sum_probs=150.5

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|.+ ++++++ ++||||+.||+|+|||+.+++              ....+ .+|...|.+++|+|+  +|+++ .|
T Consensus        16 ~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~~~--------------~~~~~-~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2          16 DDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVTGK--------------CLRTL-VGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             TTSCEE-EEEEET-TEEEEEETTSCEEEEETTTCC--------------EEEEC-CCCSSCEEEEEEETT--EEEEEETT
T ss_pred             CCceEE-EEEECC-CEEEEEeCCCeEEEEECCCCC--------------EEEEE-eCCCCCEEEEEeCCC--ccccceec
Confidence            455654 355554 799999999999999999886              33333 789999999999975  77775 59


Q ss_pred             CcEEEEEcCCCCCCC------------------------C----------------------------------------
Q 023246           82 ELVYLFEKNMGLGPS------------------------P----------------------------------------   97 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~------------------------~----------------------------------------   97 (285)
                      +.+++|+........                        .                                        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            999999987543000                        0                                        


Q ss_pred             CCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCe
Q 023246           98 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM  177 (285)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  177 (285)
                      ..+..++......+..+.+|...  +..+   .+++.++++++.||.|++||++.++++..+.+|...+.++++++  ++
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~~--~~~~---~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~  229 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTNR--VYSL---QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NI  229 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSC--EEEE---EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TE
T ss_pred             CeEEEeecccceeeEEEcCcccc--cccc---cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CE
Confidence            00000111122223333344322  3332   45788999999999999999999999999999999999888765  59


Q ss_pred             EEEEecCCcEEEEcCCCCCC-CCCC---CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          178 FATCGIEKTVKLWAPMPTDF-PPLP---DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       178 l~t~~~d~~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      |++++.|+.|++||+...+. ..+.   .|...+....   ....++++++.||.|++||+++++.+..+
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ---FNKNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE---ECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEcCCCEEEEEecccccccccccccceeeeceeecc---cCCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            99999999999999977652 2222   2333443332   24458999999999999999988766554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.1e-28  Score=200.01  Aligned_cols=204  Identities=13%  Similarity=0.062  Sum_probs=158.2

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      .++|++++|+|++ ++|++|+.|++|+|||+.++..             .......+|...|++++|+|++++|+++ .|
T Consensus        51 ~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~-------------~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          51 NGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTW-------------KPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEE-------------EEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEECCCC-CEEEEEECCCeEEEEeeccccc-------------ccccccccccccccccccccccccceeeccc
Confidence            5789999999975 8999999999999999987652             1122236788999999999999998886 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC--------
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--------  153 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--------  153 (285)
                      ++|++|+.....            ...........|...  |.+++| +|++++|++|+.|+.|++|+....        
T Consensus       117 ~~i~i~~~~~~~------------~~~~~~~~~~~~~~~--v~~v~~-~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~  181 (371)
T d1k8kc_         117 RVISICYFEQEN------------DWWVCKHIKKPIRST--VLSLDW-HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  181 (371)
T ss_dssp             SSEEEEEEETTT------------TEEEEEEECTTCCSC--EEEEEE-CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             Ccceeeeeeccc------------ccccccccccccccc--cccccc-cccccceeccccCcEEEEEeeccCcccccccc
Confidence            999999987651            000112223345555  999997 999999999999999999997542        


Q ss_pred             ----------ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccceeeccccCCCceEEE
Q 023246          154 ----------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       154 ----------~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                                +.+.....|...|.+++|+|++++|++++.|+.|++||+..+. +..+..|..++..+.+ .+++.++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~f-s~d~~~la~  260 (371)
T d1k8kc_         182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF-ITESSLVAA  260 (371)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE-EETTEEEEE
T ss_pred             ccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeee-cCCCCEEEE
Confidence                      3566677899999999999999999999999999999997765 4556667777766655 345555555


Q ss_pred             eCCCCeEEEEEeccc
Q 023246          223 LTPDVIMHVLRLQRR  237 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~  237 (285)
                      | .|+.+++|.....
T Consensus       261 g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         261 G-HDCFPVLFTYDSA  274 (371)
T ss_dssp             E-TTSSCEEEEEETT
T ss_pred             E-cCCceEEEEeeCC
Confidence            4 5787778776554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.3e-28  Score=193.40  Aligned_cols=210  Identities=15%  Similarity=0.260  Sum_probs=150.2

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i   84 (285)
                      |+|++|+  + ++||||+.||+|+|||+.+++              ....+ .+|.++|++++|+|++ +|++ +.|++|
T Consensus        16 itc~~~~--~-~~l~tgs~Dg~i~vWd~~~~~--------------~~~~l-~~H~~~V~~l~~s~~~-~l~s~s~D~~i   76 (355)
T d1nexb2          16 ITCLQFE--D-NYVITGADDKMIRVYDSINKK--------------FLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTV   76 (355)
T ss_dssp             EEEEEEE--T-TEEEEEETTTEEEEEETTTTE--------------EEEEE-ECCSSCEEEEEEETTT-EEEEEETTCCE
T ss_pred             EEEEEEC--C-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-ECCCCCEEEEEEcCCC-EEEEEeccccc
Confidence            4666664  3 799999999999999999886              33333 7899999999999865 5555 569999


Q ss_pred             EEEEcCCCCC----------------------------CCCCCCCCcc--------------------------------
Q 023246           85 YLFEKNMGLG----------------------------PSPLSLSPED--------------------------------  104 (285)
Q Consensus        85 ~iwd~~~~~~----------------------------~~~~~~~~~~--------------------------------  104 (285)
                      ++|+......                            .....+..++                                
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            9999875540                            0000000000                                


Q ss_pred             -------------------------------ccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC
Q 023246          105 -------------------------------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus       105 -------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  153 (285)
                                                     +...+.+..+.++...  +.++.+ +++++++++++.|+.|++||++++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR--IYSTIY-DHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEE-ETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeeccccc--cccccc-cccceeeecccccceEEeeecccc
Confidence                                           1111122223333333  667776 899999999999999999999999


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      ..+..+.+|...|.++++++  ++|++++.||.|++||++.... .+..|...+........++.++++ +.|+.|++||
T Consensus       234 ~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd  309 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYN  309 (355)
T ss_dssp             CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE-EEEEECTTCCCCCEEEECSSEEEE-EETTEEEEEE
T ss_pred             cccccccccccccccccccc--ceeeeeecccccccccccccce-ecccccCCceEEEEEcCCCCEEEE-EeCCEEEEEE
Confidence            99999999999999999975  6899999999999999976642 233344555454444445555555 4699999999


Q ss_pred             ecccccce
Q 023246          234 LQRRQTLA  241 (285)
Q Consensus       234 ~~~~~~~~  241 (285)
                      +++++.+.
T Consensus       310 ~~tg~~~~  317 (355)
T d1nexb2         310 LRSGKLVH  317 (355)
T ss_dssp             TTTCCBCC
T ss_pred             CCCCCEEE
Confidence            99876653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.2e-27  Score=187.33  Aligned_cols=197  Identities=14%  Similarity=0.194  Sum_probs=152.0

Q ss_pred             ccceeEEEEcCCCCcEEEEee--CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCE-EEEe
Q 023246            3 SIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISY   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~s~   79 (285)
                      .++|.+++|+|++ .++++++  .++.+++|+..+++              +...+ .+|...|++++|+|++.+ ++++
T Consensus       115 ~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1         115 AGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGN--------------SLGEV-SGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             SSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCC--------------EEEEC-CSCSSCEEEEEECSSSSCEEEEE
T ss_pred             cCcEEEEEECCCC-CccceeeccccceEEEEeecccc--------------cceee-eecccccccccccccccceEEEe
Confidence            4679999999986 6666554  47789999998876              33333 689999999999999874 5554


Q ss_pred             -cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEee---cccCceeeeeEEEecCC-CcEEEEecCCCeEEEEecCCCc
Q 023246           80 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK  154 (285)
Q Consensus        80 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~  154 (285)
                       .|+.+++|+....                +....+.   .|..  .|.+++| +|+ +.++++++.|+.|++||+++++
T Consensus       179 ~~d~~v~~~d~~~~----------------~~~~~~~~~~~~~~--~v~~v~~-~pd~~~~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         179 GDDGSVVFYQGPPF----------------KFSASDRTHHKQGS--FVRDVEF-SPDSGEFVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             ETTTEEEEEETTTB----------------EEEEEECSSSCTTC--CEEEEEE-CSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             eccccccccccccc----------------ccceecccccCCCC--ccEEeee-ccccceeccccccccceeeeeecccc
Confidence             5999999998765                3333333   3443  3999997 885 6889999999999999999999


Q ss_pred             eEEEEecccccceEeEEc---CCCCeEEEEecCCcEEEEcCCCCCC-CCCCC--CcccceeeccccCCCceEEEeCCCCe
Q 023246          155 LVRLMVGDRHVVNQLEPH---PHIPMFATCGIEKTVKLWAPMPTDF-PPLPD--NAEKIMKANKQGREDHSRITLTPDVI  228 (285)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~---p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~  228 (285)
                      .+..+.+|...+..+.|+   |++++|++++.|+.|++||++.++. ..+..  +........+....+..+++++.||.
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~  319 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT  319 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred             ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCE
Confidence            999999999888777776   7899999999999999999987763 33332  32223333333344558899999999


Q ss_pred             EEEEEe
Q 023246          229 MHVLRL  234 (285)
Q Consensus       229 i~vwd~  234 (285)
                      |++||+
T Consensus       320 i~vwdl  325 (325)
T d1pgua1         320 LNFYEL  325 (325)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8.2e-27  Score=185.70  Aligned_cols=156  Identities=17%  Similarity=0.318  Sum_probs=135.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...+....+.+.+ .++++|+.|+.|++||+.+++              ....+ .+|...|++++|+|++++|+++ .|
T Consensus       184 ~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~--------------~~~~~-~~h~~~i~~v~~~p~~~~l~s~s~d  247 (340)
T d1tbga_         184 TGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM--------------CRQTF-TGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             SSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeEeeecccccc-ceeEEeecCceEEEEECCCCc--------------EEEEE-eCCCCCeEEEEECCCCCEEEEEeCC
Confidence            3467788888864 899999999999999999876              22333 6899999999999999999986 59


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      +.|++|++...                .....+........+.+++| +|++++|++|+.||.|++||+.+++++..+.+
T Consensus       248 ~~i~~~~~~~~----------------~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         248 ATCRLFDLRAD----------------QELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             SCEEEEETTTT----------------EEEEEECCTTCCSCEEEEEE-CSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CeEEEEeeccc----------------ccccccccccccCceEEEEE-CCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence            99999999876                45555543333344999997 99999999999999999999999999999999


Q ss_pred             ccccceEeEEcCCCCeEEEEecCCcEEEEc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIEKTVKLWA  191 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd  191 (285)
                      |.+.|++++|+|++++|++|+.||+|++||
T Consensus       311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-27  Score=186.91  Aligned_cols=109  Identities=9%  Similarity=0.207  Sum_probs=91.3

Q ss_pred             eeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE-EEecccccceEeEEcCC----------CCeEEEEecCCcEEEEc
Q 023246          123 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVVNQLEPHPH----------IPMFATCGIEKTVKLWA  191 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~----------~~~l~t~~~d~~i~iwd  191 (285)
                      +.+++| +|++.+|++|+.||.|++||+.+++... .+.+|...|.+++|+|.          +.+|++|+.|++|++||
T Consensus       165 v~~~~~-s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~  243 (287)
T d1pgua2         165 PSYISI-SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  243 (287)
T ss_dssp             EEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             eeEEEe-ccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEE
Confidence            899997 9999999999999999999999887664 45789999999999875          45799999999999999


Q ss_pred             CCCC-C-CCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          192 PMPT-D-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       192 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      ++.. + +..+.+|...+..+.+. + +..+++++.|+.|++|++
T Consensus       244 ~~~~~~~~~~~~~h~~~V~~v~~~-~-~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         244 VKRPMKIIKALNAHKDGVNNLLWE-T-PSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SSCTTCCEEETTSSTTCEEEEEEE-E-TTEEEEEETTSCEEEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEEC-C-CCEEEEEECCCeEEEEEE
Confidence            8653 3 34466788888777553 3 346899999999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-26  Score=176.36  Aligned_cols=206  Identities=19%  Similarity=0.284  Sum_probs=147.0

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d   81 (285)
                      ...|+|++|  ++ ++||+|+.||+|+|||+.+++              +...+ .+|...|++++|  ++++|+++ .|
T Consensus        15 ~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~~~--------------~~~~l-~~H~~~V~~v~~--~~~~l~s~s~D   74 (293)
T d1p22a2          15 SKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLE--------------CKRIL-TGHTGSVLCLQY--DERVIITGSSD   74 (293)
T ss_dssp             CCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCC--------------EEEEE-CCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             CCCEEEEEE--cC-CEEEEEeCCCeEEEEECCCCc--------------EEEEE-ecCCCCEeeeec--ccceeeccccc
Confidence            356777665  44 799999999999999999886              33333 789999999887  56788885 59


Q ss_pred             CcEEEEEcCCCCCCCC------------------------CCCCCccccCCC---CceEeecccCceeeeeEEEecCCCc
Q 023246           82 ELVYLFEKNMGLGPSP------------------------LSLSPEDLQKRE---EPQVYSGHRNSQTVKGVNFFGPNDE  134 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~  134 (285)
                      +.|++|++..+.....                        .....++.....   ....+..|...  +..+.+   ...
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~---~~~  149 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDF---DDK  149 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC--EEEEEE---ETT
T ss_pred             ccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc--ccccee---ccc
Confidence            9999999987641000                        000001111111   11222334433  555543   456


Q ss_pred             EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC-CCCCCCcccceeeccc
Q 023246          135 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ  213 (285)
Q Consensus       135 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~  213 (285)
                      .+++++.|+.|++||+++++.+..+.+|...+..+.++  +.++++++.|+.|++||++.... .....+...+...   
T Consensus       150 ~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~---  224 (293)
T d1p22a2         150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---  224 (293)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---
T ss_pred             ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeec---
Confidence            78889999999999999999999999998888888775  46899999999999999987763 4444444444332   


Q ss_pred             cCCCceEEEeCCCCeEEEEEecccc
Q 023246          214 GREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       214 ~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ..+..++++++.||.|++||+....
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~~  249 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAAL  249 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             cccceEEEEEcCCCEEEEEECCCCc
Confidence            3455689999999999999987643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=4.1e-26  Score=179.09  Aligned_cols=211  Identities=10%  Similarity=0.053  Sum_probs=148.8

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcC----CCCCccccc--------------------c-cccC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS----SDTPVDTFC--------------------P-RHLI   57 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~----~~~~~~~~~--------------------~-~~~~   57 (285)
                      ...|++++|+|++ . +++++.|+.+++|+...........    ....+....                    . ....
T Consensus        55 ~~~v~~v~~~~~g-~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~  132 (299)
T d1nr0a2          55 ATMITGIKTTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE  132 (299)
T ss_dssp             SSCEEEEEECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred             CCcEEEEEeeccc-e-eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5689999999975 4 5667789999999986543211110    000000000                    0 0000


Q ss_pred             CCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEecCCCcE
Q 023246           58 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEY  135 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~  135 (285)
                      ......+.+++|+|++++|+++ .|+.|++||+.+.                +... ....|...  |.+++| +|++++
T Consensus       133 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~----------------~~~~~~~~~~~~~--i~~~~~-~~~~~~  193 (299)
T d1nr0a2         133 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA----------------SVSEVKTIVHPAE--ITSVAF-SNNGAF  193 (299)
T ss_dssp             EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT----------------EEEEEEEEECSSC--EEEEEE-CTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccc----------------ccccccccccccc--cccccc-cccccc
Confidence            1123457788999999988885 5999999998765                2222 23356655  999997 999999


Q ss_pred             EEEecCCCeEEEEecCCCceEE---EEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC---CCCCCccccee
Q 023246          136 VMSGSDCGHLFIWKKKGGKLVR---LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDNAEKIMK  209 (285)
Q Consensus       136 l~~~~~dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~  209 (285)
                      +++++.|+.|++||+.++..+.   .+.+|...|++++|+|++++|++++.|+.|++||++.....   ....+....+.
T Consensus       194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  273 (299)
T d1nr0a2         194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  273 (299)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence            9999999999999998776553   45678999999999999999999999999999999766432   22233333333


Q ss_pred             eccccCCCceEEEeCCCCeEEEEEec
Q 023246          210 ANKQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      ... ..+++++++++.|+.|++||+.
T Consensus       274 ~~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         274 SVI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             EEE-ECCCCEEEEEeCCCEEEEEecc
Confidence            332 3455689999999999999973

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.5e-26  Score=185.98  Aligned_cols=199  Identities=17%  Similarity=0.155  Sum_probs=139.3

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DE   82 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~   82 (285)
                      ..+++++|+|++  +||+|+.||+|+|||+.+++..         ..+.....+.+|..+|++++|+|+|++|++++ |+
T Consensus       185 ~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~---------~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         185 QFATSVDISERG--LIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             CCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE---------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred             CcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc---------cccccccccccccceEEEcccccccceeeeecCCC
Confidence            457899999974  8999999999999999988643         22233344478999999999999999999964 65


Q ss_pred             ---cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEE
Q 023246           83 ---LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  159 (285)
                         .|++||+.++.....  +.. ..........+.+|...  |++++| +|++++|++++.|++|++||+++++++.++
T Consensus       254 t~~~i~lwd~~~g~~~~~--l~~-~~~~~~~~~~~~gH~~~--V~~l~f-spd~~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGS--LSV-PTHSSQASLGEFAHSSW--VMSLSF-NDSGETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             TEEEEEEEETTTCCEEEE--ECB-C--------CCBSBSSC--EEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             Ccceeeecccccceeeee--ecc-ccccccceeeeecccCc--eeeecc-CCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence               499999987620000  000 00011122334578876  999997 999999999999999999999999999999


Q ss_pred             ecccccce----EeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          160 VGDRHVVN----QLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       160 ~~h~~~v~----~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      .+|...|.    .++|+|++..+++++.. .++.|.-  ......            .....+.+++.+.|+.|++|.-
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~------------~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKK--GWRSGM------------GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBCSSCCEE-EEEEECT--TTSBST------------TCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCcCCcccCCccEEEECCCCCEEEEcccc-eEEECcc--Cceecc------------ccCCCCEEEEEEcCCeEEEEeC
Confidence            99998876    48899999888766521 2222221  111000            0111235788999999999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.8e-25  Score=182.40  Aligned_cols=192  Identities=13%  Similarity=0.144  Sum_probs=138.4

Q ss_pred             ccceeEEEEcCCC----CcEEEEeeCCCcEEEEEccCCcccCC---cCCCCCcccccccccCCCCCcceEEEEEecCCCE
Q 023246            3 SIRLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCHWYSP---ISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL   75 (285)
Q Consensus         3 ~~~v~~~~~s~~~----~~~l~tg~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~   75 (285)
                      +..+.+++|.++.    ..++++++.||++++|++........   ..................+...+.+++|+|++ +
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~  197 (393)
T d1sq9a_         119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  197 (393)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             CCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-E
Confidence            3456778887753    26899999999999999864321100   00000000001112224556678999999998 6


Q ss_pred             EEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC---eEEEEecC
Q 023246           76 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKK  151 (285)
Q Consensus        76 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~v~vwd~~  151 (285)
                      |+++ .|++|++||+.++.          .+...+....+.+|...  |.+++| +|++++|++|+.|+   .|++||++
T Consensus       198 lasgs~Dg~i~iwd~~~~~----------~~~~~~~~~~l~~h~~~--V~~l~~-spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLR----------PLYNFESQHSMINNSNS--IRSVKF-SPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             EEEECTTSEEEEEETTTTE----------EEEEEECCC---CCCCC--EEEEEE-CSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEeCCCcEEEEeecccc----------cccccccccccccccce--EEEccc-ccccceeeeecCCCCcceeeecccc
Confidence            7775 59999999998761          01111122344567766  999997 99999999999886   59999999


Q ss_pred             CCceEEEEe-------------cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC-CCCCCCCcccce
Q 023246          152 GGKLVRLMV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIM  208 (285)
Q Consensus       152 ~~~~~~~~~-------------~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~  208 (285)
                      +++++..+.             +|...|++++|+|++++|++++.|++|++||+++++ +..+.+|...+.
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            998888774             799999999999999999999999999999998876 466778887764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=172.86  Aligned_cols=237  Identities=7%  Similarity=-0.063  Sum_probs=154.0

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC-EEEEe-
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-   79 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~s~-   79 (285)
                      ++..|++|+|+|++ ++||+|+.||+|+|||+.++....           ..... .+|..+|.+++|+|++. +|+++ 
T Consensus        10 h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~~~-----------~~~~~-~~h~~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_          10 PKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNV-----------DLLQS-LRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEE-----------EEEEE-EECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCcce-----------EEEEe-cCCCCCEEEEEEeCCCCCEEEEcc
Confidence            45679999999985 899999999999999998764210           11111 36899999999999764 67775 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE---
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---  156 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~---  156 (285)
                      .|+.|++|+....                ........+...  .....++.++...+++++.++.+++||++.+...   
T Consensus        77 ~d~~v~~w~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~  138 (342)
T d1yfqa_          77 VQGEILKVDLIGS----------------PSFQALTNNEAN--LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             TTSCEEEECSSSS----------------SSEEECBSCCCC--SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             cccceeeeecccc----------------cccccccccccc--cccccccccccccccccccccccceeeccccccceee
Confidence            5999999999876                344444444332  2223323678889999999999999998754432   


Q ss_pred             -EEEecc--cccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCC----CCCCcccceeeccccCCCceEEEeCCCCeE
Q 023246          157 -RLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----LPDNAEKIMKANKQGREDHSRITLTPDVIM  229 (285)
Q Consensus       157 -~~~~~h--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i  229 (285)
                       .....+  ......+.+.+.+..+++++.|+.|++|+++......    ....................+++++.||.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  218 (342)
T d1yfqa_         139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred             ecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeE
Confidence             222222  2334556778888899999999999999987654321    111222222222223344456666677777


Q ss_pred             EEEEecccccc-------------------------eeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          230 HVLRLQRRQTL-------------------------AYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       230 ~vwd~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .+|++......                         ..+.+.|+...++.+..+|.|.+++...+
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             EEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence            77765432111                         12344555556666666666666665544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=2.2e-22  Score=161.17  Aligned_cols=234  Identities=8%  Similarity=0.098  Sum_probs=168.9

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCC--CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-   79 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-   79 (285)
                      ..+|.+++|+|++ .+|++++.+  ..|++||+.+++.               ..+ ..|...|.+++|+|++++|+++ 
T Consensus        42 ~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~~~~---------------~~~-~~~~~~v~~~~~spdg~~l~~~~  104 (360)
T d1k32a3          42 PLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRTGKA---------------EKF-EENLGNVFAMGVDRNGKFAVVAN  104 (360)
T ss_dssp             CSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTTCCE---------------EEC-CCCCCSEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCCCcE---------------EEe-eCCCceEEeeeecccccccceec
Confidence            5689999999986 666665544  3799999998752               122 6788999999999999999885 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEe----------cCCCeEEEEe
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG----------SDCGHLFIWK  149 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~v~vwd  149 (285)
                      .++.+++|+....                +....+..+...  +.+++| +|++++|+.+          ..++.+++|+
T Consensus       105 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~-spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3         105 DRFEIMTVDLETG----------------KPTVIERSREAM--ITDFTI-SDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             TTSEEEEEETTTC----------------CEEEEEECSSSC--CCCEEE-CTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             ccccccccccccc----------------ceeeeeeccccc--ccchhh-ccceeeeeeeccccccceeeccccceeeec
Confidence            5999999999887                566777777765  889997 9999999854          3466799999


Q ss_pred             cCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC--------------------CCC--------
Q 023246          150 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--------------------PLP--------  201 (285)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--------------------~~~--------  201 (285)
                      +.+++.. .+..|...+..++|+|++++|++++.|+.+++|+.......                    .+.        
T Consensus       166 ~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  244 (360)
T d1k32a3         166 MEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA  244 (360)
T ss_dssp             TTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred             cccCcee-eecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccc
Confidence            9977655 44456778899999999999999999999999986432100                    000        


Q ss_pred             ------CCcccceeeccc---------cCC-------------CceEEEeCCCCeEEEEEecccccce------eEeeec
Q 023246          202 ------DNAEKIMKANKQ---------GRE-------------DHSRITLTPDVIMHVLRLQRRQTLA------YRERRY  247 (285)
Q Consensus       202 ------~~~~~~~~~~~~---------~~~-------------~~~~~~~s~d~~i~vwd~~~~~~~~------~~~~~~  247 (285)
                            .....+......         ...             ..++++++.++.+++||+.+++...      .+.++|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~Sp  324 (360)
T d1k32a3         245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSA  324 (360)
T ss_dssp             CCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECT
T ss_pred             cceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECC
Confidence                  000000000000         000             0123445567899999998765432      346888


Q ss_pred             cccccCCCCCcCeEEEeecCCCCCCC
Q 023246          248 NAADFESDEEEGETYLLGFSDSDASS  273 (285)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~~  273 (285)
                      ++..++....+|.|++++...++++.
T Consensus       325 DG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         325 DRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             TSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcce
Confidence            99999988888999999998876654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.9e-22  Score=153.26  Aligned_cols=201  Identities=13%  Similarity=0.297  Sum_probs=147.8

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCc--------------------cc--------ccc
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPV--------------------DT--------FCP   53 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--------------------~~--------~~~   53 (285)
                      +..+|++++|++   ++|++|+.|+.|++|++..+............                    ..        ...
T Consensus        54 H~~~V~~v~~~~---~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (293)
T d1p22a2          54 HTGSVLCLQYDE---RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL  130 (293)
T ss_dssp             CSSCEEEEECCS---SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE
T ss_pred             CCCCEeeeeccc---ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccc
Confidence            356898888743   69999999999999999877543222111000                    00        001


Q ss_pred             cccCCCCCcceEEEEEecCCCEEEE-ecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCC
Q 023246           54 RHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN  132 (285)
Q Consensus        54 ~~~~~~h~~~v~~i~~s~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  132 (285)
                      ......|...+..+.+.+.  .+++ +.|+.|++||..+.                +.+..+.++...  +..+.+   +
T Consensus       131 ~~~~~~~~~~v~~~~~~~~--~~~~~s~d~~i~~~d~~~~----------------~~~~~~~~~~~~--v~~~~~---~  187 (293)
T d1p22a2         131 RRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTC----------------EFVRTLNGHKRG--IACLQY---R  187 (293)
T ss_dssp             EEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEETTTC----------------CEEEEEECCSSC--EEEEEE---E
T ss_pred             cccccccccccccceeccc--ccccccCCCceeeecCCCC----------------cEEEEEcccccc--cccccC---C
Confidence            1122456777777776553  5555 56999999999887                677888888765  777664   4


Q ss_pred             CcEEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCC----------CCCCCC
Q 023246          133 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----------FPPLPD  202 (285)
Q Consensus       133 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----------~~~~~~  202 (285)
                      +.++++++.||.|++||+++.+.+..+.+|...+..  +++++.+|++++.||.|++||+....          +..+.+
T Consensus       188 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (293)
T d1p22a2         188 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  265 (293)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC
Confidence            678999999999999999999999999988887765  45677899999999999999974321          234566


Q ss_pred             CcccceeeccccCCCceEEEeCCCCeEEEEE
Q 023246          203 NAEKIMKANKQGREDHSRITLTPDVIMHVLR  233 (285)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd  233 (285)
                      |...+..+.+   ++.++++++.|++|++||
T Consensus       266 H~~~V~~v~~---d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         266 HSGRVFRLQF---DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CSSCCCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred             CCCCEEEEEE---cCCEEEEEecCCEEEEeC
Confidence            7777766654   345899999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.1e-22  Score=158.21  Aligned_cols=183  Identities=14%  Similarity=0.148  Sum_probs=141.6

Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEE
Q 023246           10 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFE   88 (285)
Q Consensus        10 ~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd   88 (285)
                      .+.++ +.+++++..|+.|++||+.+++.              .... .++...+.++.|+|++.+++++ .|+.|++|+
T Consensus       166 ~~~~~-~~~~~~~~~d~~i~~~d~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  229 (355)
T d1nexb2         166 TVSGH-GNIVVSGSYDNTLIVWDVAQMKC--------------LYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWD  229 (355)
T ss_dssp             EEEEE-TTEEEEEETTSCEEEEETTTTEE--------------EEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ccccc-cceeeeecccceeeeeecccccc--------------eeee-eccccccccccccccceeeecccccceEEeee
Confidence            34454 37999999999999999988762              2222 5677789999999999988885 599999999


Q ss_pred             cCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccccceE
Q 023246           89 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ  168 (285)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  168 (285)
                      ..++                ..+..+.+|...  |.++++ +  ++++++++.||.|++||++++....  ..|...+.+
T Consensus       230 ~~~~----------------~~~~~~~~h~~~--v~~~~~-~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~  286 (355)
T d1nexb2         230 LENG----------------ELMYTLQGHTAL--VGLLRL-S--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSA  286 (355)
T ss_dssp             TTTC----------------CEEEEECCCSSC--CCEEEE-C--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCC
T ss_pred             cccc----------------cccccccccccc--cccccc-c--cceeeeeecccccccccccccceec--ccccCCceE
Confidence            9987                688888999876  999986 4  5799999999999999998776554  445666666


Q ss_pred             eE-EcCCCCeEEEEecCCcEEEEcCCCCCC-C-CCCCCcccceeeccccCCCceEEEeCCCCeEEEEEe
Q 023246          169 LE-PHPHIPMFATCGIEKTVKLWAPMPTDF-P-PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL  234 (285)
Q Consensus       169 ~~-~~p~~~~l~t~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~  234 (285)
                      +. +++++.+++++ .|+.|++||++++++ . .+.+|...+..+.+.  +..++++++.||.++||.+
T Consensus       287 ~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~--~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         287 ITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEE--TTEEEEEEESSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEc--CCeEEEEEECCCcEEEEEE
Confidence            54 56666665555 599999999988774 2 456677788777553  3457788899999777654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=1.8e-22  Score=161.78  Aligned_cols=191  Identities=7%  Similarity=0.045  Sum_probs=152.6

Q ss_pred             eEEEEcC-CCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC--C
Q 023246            7 NAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND--E   82 (285)
Q Consensus         7 ~~~~~s~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d--~   82 (285)
                      .+-.||| || +++|+++ +|.|++||+..++.              . .  ..|...|++++|+|+|++|++ +.+  .
T Consensus         6 ~~~~fSP~dG-~~~a~~~-~g~v~v~d~~~~~~--------------~-~--~~~~~~v~~~~~spDg~~l~~~~~~~g~   66 (360)
T d1k32a3           6 FAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYV--------------L-K--VPEPLRIRYVRRGGDTKVAFIHGTREGD   66 (360)
T ss_dssp             GEEEEEECGG-GCEEEEE-TTEEEEECTTSSBE--------------E-E--CSCCSCEEEEEECSSSEEEEEEEETTEE
T ss_pred             hcccccCCCC-CEEEEEE-CCeEEEEECCCCcE--------------E-E--ccCCCCEEEEEECCCCCEEEEEEcCCCC
Confidence            4567999 65 8888876 57999999987752              1 1  258889999999999998776 433  4


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecc
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD  162 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h  162 (285)
                      .|++||..++                 ....+..|...  +.+++| +|+++++++++.++.+++|++.+++....+..|
T Consensus        67 ~v~v~d~~~~-----------------~~~~~~~~~~~--v~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          67 FLGIYDYRTG-----------------KAEKFEENLGN--VFAMGV-DRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             EEEEEETTTC-----------------CEEECCCCCCS--EEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEEECCCC-----------------cEEEeeCCCce--EEeeee-cccccccceeccccccccccccccceeeeeecc
Confidence            7999999876                 55667777766  999997 999999999999999999999999999999999


Q ss_pred             cccceEeEEcCCCCeEEEEe----------cCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEE
Q 023246          163 RHVVNQLEPHPHIPMFATCG----------IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL  232 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vw  232 (285)
                      ...+.+++|+|++++|+.+.          .++.+++|++.+++...+..+........ ..++++.++.++.++.+.+|
T Consensus       127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA-FDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEE-ECTTSCEEEEEESCCCCCEE
T ss_pred             cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccccccccccc-ccCCCCEEEEEeCCCceEcc
Confidence            99999999999999988654          34569999998877555544544444443 35677788999999999999


Q ss_pred             Eeccc
Q 023246          233 RLQRR  237 (285)
Q Consensus       233 d~~~~  237 (285)
                      +....
T Consensus       206 d~~~~  210 (360)
T d1k32a3         206 DRVVL  210 (360)
T ss_dssp             CSSSS
T ss_pred             ccccc
Confidence            86543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.3e-22  Score=158.03  Aligned_cols=150  Identities=16%  Similarity=0.263  Sum_probs=116.6

Q ss_pred             EEEEcCCCCcEEEEeeCC-CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEE
Q 023246            8 AIVIDPRNPNYFAVGGSD-EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY   85 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~   85 (285)
                      ..+++|++ ..+++++.+ +.+++|++...+              ........|...+++++|+|++.+|+++ .|+.|+
T Consensus       123 ~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~  187 (287)
T d1pgua2         123 GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLE--------------VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL  187 (287)
T ss_dssp             EEEEEECS-SEEEEEETTTSCEEEEETTEEE--------------EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeeeeccC-cceeeeccccceeeeeeccccc--------------eeeeeeeccCCceeEEEeccCcccccccccccccc
Confidence            34556654 566666655 578999886544              2223335678899999999999999986 599999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCc-eEeecccCceeeeeEEEecCC----------CcEEEEecCCCeEEEEecCC-C
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPN----------DEYVMSGSDCGHLFIWKKKG-G  153 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~----------~~~l~~~~~dg~v~vwd~~~-~  153 (285)
                      +||+..+                ... ..+..|...  |.+++| +|.          +.++++|+.|+.|++||+++ .
T Consensus       188 i~d~~~~----------------~~~~~~~~~h~~~--v~~~~~-~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         188 LYDLQSR----------------EVKTSRWAFRTSK--INAISW-KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EEETTTT----------------EEEECCSCCCSSC--EEEEEE-CCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             ceeeccc----------------ccccccccccccc--cceeee-cccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            9999876                222 335567765  899986 654          56899999999999999876 5


Q ss_pred             ceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcC
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP  192 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~  192 (285)
                      +.+..+.+|...|++++|+|++ .|++++.|++|++|++
T Consensus       249 ~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            5677788999999999999986 6899999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-21  Score=153.66  Aligned_cols=151  Identities=21%  Similarity=0.304  Sum_probs=118.0

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEE
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY   85 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~   85 (285)
                      ....++++ +.++++|+.||+|++||+..++.              .... .+|...+.++.+++  ++|+++ .|+.|+
T Consensus       179 ~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~--------------~~~~-~~~~~~v~~~~~~~--~~l~s~s~d~~i~  240 (342)
T d2ovrb2         179 RVYSLQFD-GIHVVSGSLDTSIRVWDVETGNC--------------IHTL-TGHQSLTSGMELKD--NILVSGNADSTVK  240 (342)
T ss_dssp             CEEEEEEC-SSEEEEEETTSCEEEEETTTCCE--------------EEEE-CCCCSCEEEEEEET--TEEEEEETTSCEE
T ss_pred             ccccccCC-CCEEEEEeCCCeEEEeeccccee--------------eeEe-cccccceeEEecCC--CEEEEEcCCCEEE
Confidence            34455555 37999999999999999988762              2222 67888898888765  578885 599999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-eeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe----
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV----  160 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----  160 (285)
                      +||....                +....+..+... ..+.++.+   +++++++|+.||.|++||+++++.++.+.    
T Consensus       241 iwd~~~~----------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~  301 (342)
T d2ovrb2         241 IWDIKTG----------------QCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES  301 (342)
T ss_dssp             EEETTTC----------------CEEEEECSTTSCSSCEEEEEE---CSSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred             EEecccc----------------cccccccccceeeeceeeccc---CCCeeEEEcCCCEEEEEECCCCCEEEEEecccC
Confidence            9999876                455555543321 12555554   56799999999999999999999988874    


Q ss_pred             -cccccceEeEEcCCCCeEEEEecCCc----EEEEcCCC
Q 023246          161 -GDRHVVNQLEPHPHIPMFATCGIEKT----VKLWAPMP  194 (285)
Q Consensus       161 -~h~~~v~~~~~~p~~~~l~t~~~d~~----i~iwd~~~  194 (285)
                       +|...|++++|+|++.++++|+.||+    |++||+..
T Consensus       302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence             57778999999999999999999985    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7e-20  Score=144.65  Aligned_cols=214  Identities=11%  Similarity=-0.033  Sum_probs=142.7

Q ss_pred             ccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ecC
Q 023246            3 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YND   81 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~d   81 (285)
                      ..+|++++|+|+++.+|++|+.||+|++|++....              ........+........+.++...+++ +.+
T Consensus        56 ~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (342)
T d1yfqa_          56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP--------------SFQALTNNEANLGICRICKYGDDKLIAASWD  121 (342)
T ss_dssp             SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS--------------SEEECBSCCCCSCEEEEEEETTTEEEEEETT
T ss_pred             CCCEEEEEEeCCCCCEEEEcccccceeeeeccccc--------------ccccccccccccccccccccccccccccccc
Confidence            56899999999766799999999999999998765              222222334444556666777777777 569


Q ss_pred             CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE---EE
Q 023246           82 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV---RL  158 (285)
Q Consensus        82 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~---~~  158 (285)
                      +.+++||++....            ..........+..........+ .+.+..+++++.|+.|++||+...+..   ..
T Consensus       122 ~~~~~wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  188 (342)
T d1yfqa_         122 GLIEVIDPRNYGD------------GVIAVKNLNSNNTKVKNKIFTM-DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE  188 (342)
T ss_dssp             SEEEEECHHHHTT------------BCEEEEESCSSSSSSCCCEEEE-EECSSEEEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred             cccceeecccccc------------ceeeecccccccccceeeeeee-eccCCceeeecCCCcEEEEecccCcccceeee
Confidence            9999999875510            0011111122222212344444 678889999999999999999876543   22


Q ss_pred             EecccccceEeEEcC-CCCeEEEEecCCcEEEEcCCCCCCC----------------CCCCCcccceeeccccCCCceEE
Q 023246          159 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTDFP----------------PLPDNAEKIMKANKQGREDHSRI  221 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~  221 (285)
                      ...+...+.+..+.| ++..+++++.||.+.+|+.......                ....+...+..+. +.+...+++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~sp~~~~la  267 (342)
T d1yfqa_         189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE-FSPRHKFLY  267 (342)
T ss_dssp             ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE-ECTTTCCEE
T ss_pred             ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEE-ecCCccEEE
Confidence            233445556666555 5667999999999999987543211                1112223333333 355677899


Q ss_pred             EeCCCCeEEEEEecccccceeEe
Q 023246          222 TLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       222 ~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      +++.||.|++||+++++.+..+.
T Consensus       268 sg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         268 TAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEECC
T ss_pred             EECCCCEEEEEECCCCcEEEEec
Confidence            99999999999999887765553

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=1.9e-19  Score=147.85  Aligned_cols=101  Identities=10%  Similarity=0.012  Sum_probs=68.7

Q ss_pred             EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCC
Q 023246           18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPS   96 (285)
Q Consensus        18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~   96 (285)
                      ++++.+.||+|+|||+.+++.              ...+ ..| ..+..++|||||++|+++ .|++|++||+.++    
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~--------------~~~l-~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~----   93 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKI--------------VKVI-DTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAK----   93 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSE--------------EEEE-ECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSS----
T ss_pred             EEEEEcCCCEEEEEECCCCcE--------------EEEE-eCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCC----
Confidence            557788899999999999873              3333 333 358999999999998885 5999999999877    


Q ss_pred             CCCCCCccccCCCCce--Eee---cccCceeeeeEEEecCCCcEEEE-ecCCCeEEEEecCCC
Q 023246           97 PLSLSPEDLQKREEPQ--VYS---GHRNSQTVKGVNFFGPNDEYVMS-GSDCGHLFIWKKKGG  153 (285)
Q Consensus        97 ~~~~~~~~~~~~~~~~--~~~---~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~v~vwd~~~~  153 (285)
                                  +...  .+.   +|..  .+.+++| +|+|+++++ +..++.+.+||..++
T Consensus        94 ------------~~~~~~~i~~~~~~~~--~~~s~~~-spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          94 ------------EPTKVAEIKIGIEARS--VESSKFK-GYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             ------------SCEEEEEEECCSEEEE--EEECCST-TCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ------------ceeEEEEEeCCCCCcc--eEEeeee-cCCCCEEEEeecCCCeEEEEcCCcc
Confidence                        2222  122   2221  1445554 677776543 446677777776544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=3.9e-17  Score=127.07  Aligned_cols=228  Identities=5%  Similarity=0.025  Sum_probs=152.5

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d~   82 (285)
                      ....++|+|++..++++++.++.|++||+.+++..              ..+ ..|. .+..++|++++..++. + .++
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--------------~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~   96 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------ATV-PAGS-SPQGVAVSPDGKQVYVTNMASS   96 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------EEE-ECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--------------eee-eccc-cccccccccccccccccccccc
Confidence            46789999987445577888999999999988732              222 2333 4688999999986555 4 488


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCCceEEEEec
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVG  161 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~~  161 (285)
                      .+.+|+..++                +....+..+..   ...+.+ +++++.+ +++..++.+.+|+..+.+.+..+..
T Consensus        97 ~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~-~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          97 TLSVIDTTSN----------------TVAGTVKTGKS---PLGLAL-SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             EEEEEETTTT----------------EEEEEEECSSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eeeecccccc----------------eeeeecccccc---ceEEEe-ecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence            9999999877                56666665543   677886 8998876 4566789999999999988888775


Q ss_pred             ccccceEeEEcCCCCeEEEEecC-CcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEe--CCCCeEEEEEecccc
Q 023246          162 DRHVVNQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL--TPDVIMHVLRLQRRQ  238 (285)
Q Consensus       162 h~~~v~~~~~~p~~~~l~t~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~d~~i~vwd~~~~~  238 (285)
                      + ..+..++++|++..+++++.+ +.+.+|+............................+++.  ..++.|++||+.+.+
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             C-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCe
Confidence            4 567889999999997777755 567777776655322211222223333322333333333  345789999998876


Q ss_pred             cceeE---------eeecccccc-CCCCCcCeEEEeecCCC
Q 023246          239 TLAYR---------ERRYNAADF-ESDEEEGETYLLGFSDS  269 (285)
Q Consensus       239 ~~~~~---------~~~~~~~~~-~~~~~~~~v~~~~~~~~  269 (285)
                      ....+         .++|++..+ .....++.|.+++...+
T Consensus       236 ~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         236 ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            65544         344454433 33344455666665554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=2e-17  Score=131.12  Aligned_cols=69  Identities=9%  Similarity=0.083  Sum_probs=54.7

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE-EEe-cCCcEEE
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYL   86 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~-~d~~i~i   86 (285)
                      ++|++++ ++|++++.|++|.+||+.+++.+              ..+...|...+.+++|+|||+++ +++ .++.|++
T Consensus         2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~--------------~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGH-EYMIVTNYPNNLHVVDVASDTVY--------------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTC-EEEEEEETTTEEEEEETTTTEEE--------------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCC-cEEEEEcCCCEEEEEECCCCCEE--------------EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEE
Confidence            5788965 99999999999999999998743              22222445567899999999976 445 4899999


Q ss_pred             EEcCCC
Q 023246           87 FEKNMG   92 (285)
Q Consensus        87 wd~~~~   92 (285)
                      ||+.++
T Consensus        67 ~d~~t~   72 (346)
T d1jmxb_          67 IDLDTC   72 (346)
T ss_dssp             EETTTT
T ss_pred             EeCccC
Confidence            999876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=2.2e-17  Score=135.62  Aligned_cols=194  Identities=11%  Similarity=-0.012  Sum_probs=132.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP   95 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~   95 (285)
                      .++++.+.||+|.|||..+++.              ...+ ..| ..+..++|||||++++++ .|++|.+||+.+..  
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v--------------~~~~-~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~--   94 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEI--------------KTVL-DTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--   94 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE--------------EEEE-ECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--
T ss_pred             EEEEEEcCCCEEEEEECCCCcE--------------EEEE-eCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC--
Confidence            3468999999999999999983              3333 333 358999999999999885 59999999998761  


Q ss_pred             CCCCCCCccccCCCCceEee---cccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCCceEEEEeccc--------
Q 023246           96 SPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDR--------  163 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~~h~--------  163 (285)
                                  ......+.   .|..  .+.+..| +|+|+++ ++++.++.|++||..+++++..+..|.        
T Consensus        95 ------------~~~~~~i~~~~~~~~--~~~s~~~-SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~  159 (432)
T d1qksa2          95 ------------PTTVAEIKIGSEARS--IETSKME-GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  159 (432)
T ss_dssp             ------------CCEEEEEECCSEEEE--EEECCST-TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             ------------ceEEEEEecCCCCCC--eEEeccc-CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec
Confidence                        01222222   2222  2555565 8899976 678889999999999999988876543        


Q ss_pred             ---ccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCC-CCCCcccceeeccccCCCceEEE-eCCCCeEEEEEeccc
Q 023246          164 ---HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPP-LPDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRR  237 (285)
Q Consensus       164 ---~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~i~vwd~~~~  237 (285)
                         .....+.++|++.. +++...++.|.+|+....+... ...............++++++++ ...+..+.++|....
T Consensus       160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence               34556788999887 4566678999999987654211 11111222222233555555544 455678899998876


Q ss_pred             ccceeE
Q 023246          238 QTLAYR  243 (285)
Q Consensus       238 ~~~~~~  243 (285)
                      +....+
T Consensus       240 ~~~~~~  245 (432)
T d1qksa2         240 KLVAIE  245 (432)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            665444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=4.3e-17  Score=128.71  Aligned_cols=206  Identities=10%  Similarity=-0.001  Sum_probs=139.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec----
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~----   80 (285)
                      .+.+++|+||+..++++++.++.|.+||+.+++.........          ...+...+..++|+|++++++.+.    
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~----------~~~~~~~~~~v~~s~dg~~l~~~~~~~~  104 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST----------PEERVKSLFGAALSPDGKTLAIYESPVR  104 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB----------TTEEEECTTCEEECTTSSEEEEEEEEEE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC----------CcccccceeeEEEcCCCcEEEEeecCCc
Confidence            467899999874445677889999999999987543322111          012233455789999999776642    


Q ss_pred             ---------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecC
Q 023246           81 ---------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK  151 (285)
Q Consensus        81 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~  151 (285)
                               +..+.+||..+.                +....+..+..   +..++| +++++++++++.+  +.+||..
T Consensus       105 ~~~~~~~~~~~~~~~~d~~~~----------------~~~~~~~~~~~---~~~~~~-s~dg~~l~~~~~~--~~~~d~~  162 (337)
T d1pbyb_         105 LELTHFEVQPTRVALYDAETL----------------SRRKAFEAPRQ---ITMLAW-ARDGSKLYGLGRD--LHVMDPE  162 (337)
T ss_dssp             ECSSCEEECCCEEEEEETTTT----------------EEEEEEECCSS---CCCEEE-CTTSSCEEEESSS--EEEEETT
T ss_pred             ceeeeccccccceeeccccCC----------------eEEEeccccCC---ceEEEE-cCCCCEEEEEcCC--cceeeee
Confidence                     456888998876                55566554432   677887 9999999887754  5567766


Q ss_pred             CCceEEEE------------------------------------------------------------------eccccc
Q 023246          152 GGKLVRLM------------------------------------------------------------------VGDRHV  165 (285)
Q Consensus       152 ~~~~~~~~------------------------------------------------------------------~~h~~~  165 (285)
                      +++....+                                                                  ..+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (337)
T d1pbyb_         163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcc
Confidence            55443322                                                                  123334


Q ss_pred             ceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeEee
Q 023246          166 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER  245 (285)
Q Consensus       166 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~  245 (285)
                      +..++++|++.+++.+  ++.|++||+.+++......+...+..+. ..+++.++++++.++.|++||..+.+.+..+..
T Consensus       243 ~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEE-ECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            5566777887777655  5899999998876432222333444443 356677888899999999999999887766644

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=4.5e-16  Score=120.92  Aligned_cols=188  Identities=9%  Similarity=0.060  Sum_probs=131.5

Q ss_pred             EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-Ee-cCCcEEEEEcCCCCCC
Q 023246           18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-SY-NDELVYLFEKNMGLGP   95 (285)
Q Consensus        18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s~-~d~~i~iwd~~~~~~~   95 (285)
                      .+++++.|++|.+||+.+++.+..              + . ....+..++|+|+|++|+ ++ .++.|++||+.++   
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~--------------i-~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---   64 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTAT--------------I-P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---   64 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--------------E-E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred             EEEEECCCCEEEEEECCCCeEEEE--------------E-E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---
Confidence            456778999999999999874322              1 1 123578999999999764 55 4899999999887   


Q ss_pred             CCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCC
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH  174 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  174 (285)
                                   +.+..+..+..   +..+.+ +++++++ +++..++.+.+|+..+++....+..+ ..+..++|+|+
T Consensus        65 -------------~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d  126 (301)
T d1l0qa2          65 -------------NVIATVPAGSS---PQGVAV-SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD  126 (301)
T ss_dssp             -------------EEEEEEECSSS---EEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT
T ss_pred             -------------ceeeeeecccc---cccccc-ccccccccccccccceeeecccccceeeeecccc-ccceEEEeecC
Confidence                         67777776654   677887 8888755 55677889999999999888888754 56788999999


Q ss_pred             CCeE-EEEecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEeccccccee
Q 023246          175 IPMF-ATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY  242 (285)
Q Consensus       175 ~~~l-~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~  242 (285)
                      +..+ +++..++.+.+|+............................+++...++.+.+|+.........
T Consensus       127 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            9985 4556788999999987753222112222333333223333455555567778887666544433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.6e-16  Score=125.35  Aligned_cols=145  Identities=10%  Similarity=0.053  Sum_probs=110.7

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE-EEe-cCCcEEEEEcCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDELVYLFEKNMGLG   94 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~-~d~~i~iwd~~~~~~   94 (285)
                      ++|++++.|++|+|||+.+++.+..+.             ...+...+.+++|+|||+++ +++ .++.|.+||+.++  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~-------------~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVIT-------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE-------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEE-------------CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC--
Confidence            689999999999999999987432211             12334567789999999976 455 4899999999987  


Q ss_pred             CCCCCCCCccccCCCCceEeecccCc---eeeeeEEEecCCCcEEEEecC------------CCeEEEEecCCCceEEEE
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSD------------CGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~------------dg~v~vwd~~~~~~~~~~  159 (285)
                                    +.+..+..+...   ..+..++| +|++++++++..            +..+.+||..+++.+..+
T Consensus        67 --------------~~~~~~~~~~~~~~~~~~~~v~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  131 (337)
T d1pbyb_          67 --------------ETLGRIDLSTPEERVKSLFGAAL-SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF  131 (337)
T ss_dssp             --------------CEEEEEECCBTTEEEECTTCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE
T ss_pred             --------------cEEEEEecCCCcccccceeeEEE-cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec
Confidence                          566666554332   12567887 999999987763            678999999999988888


Q ss_pred             ecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          160 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      .. ...+..++|+|+++++++++.+  +.+||...
T Consensus       132 ~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~  163 (337)
T d1pbyb_         132 EA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEA  163 (337)
T ss_dssp             EC-CSSCCCEEECTTSSCEEEESSS--EEEEETTT
T ss_pred             cc-cCCceEEEEcCCCCEEEEEcCC--cceeeeec
Confidence            75 4568899999999999888754  67787654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.7e-15  Score=124.15  Aligned_cols=164  Identities=7%  Similarity=-0.006  Sum_probs=118.1

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE-EEe-cCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-ISY-NDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s~-~d~   82 (285)
                      .+..++||||+ +++++++.|++|++||+.+++....       .  .+. ...+|.+.+.+..|+|||++| +++ .++
T Consensus        63 ~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~-------~--~i~-~~~~~~~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          63 AVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTV-------A--EIK-IGSEARSIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             CEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEE-------E--EEE-CCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             CeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEE-------E--EEe-cCCCCCCeEEecccCCCCCEEEEEcCCCC
Confidence            57899999986 8999999999999999988752110       0  111 114566677777889999976 455 499


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc---------eeeeeEEEecCCCcEE-EEecCCCeEEEEecCC
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---------QTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKG  152 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~  152 (285)
                      +|++||..++                +.+..+..+...         .....+.+ ++++..+ ++...++.|.+||..+
T Consensus       132 ~v~i~d~~t~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-s~dg~~~~vs~~~~~~i~~~d~~~  194 (432)
T d1qksa2         132 QYVIMDGETL----------------EPKKIQSTRGMTYDEQEYHPEPRVAAILA-SHYRPEFIVNVKETGKILLVDYTD  194 (432)
T ss_dssp             EEEEEETTTC----------------CEEEEEECCEECTTTCCEESCCCEEEEEE-CSSSSEEEEEETTTTEEEEEETTC
T ss_pred             eEEEEeCccc----------------cceeeeccCCccccceeccCCCceeEEEE-CCCCCEEEEEEccCCeEEEEEccC
Confidence            9999999887                455555433211         11456776 8888765 6677889999999988


Q ss_pred             CceEEEEe-cccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC
Q 023246          153 GKLVRLMV-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD  196 (285)
Q Consensus       153 ~~~~~~~~-~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~  196 (285)
                      .+...... .+...+..++|+|+++++++++ .++.+.+++....+
T Consensus       195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            87654433 3456788999999999876666 45688899987654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.60  E-value=1.2e-14  Score=118.88  Aligned_cols=103  Identities=7%  Similarity=-0.013  Sum_probs=84.9

Q ss_pred             EEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCC
Q 023246           75 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG  153 (285)
Q Consensus        75 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  153 (285)
                      ++++. .|++|+|||+.++                +.+.++..+..   +..++| +|+|+++++++.|+.|++||+.++
T Consensus        34 ~~V~~~~dg~v~vwD~~t~----------------~~~~~l~~g~~---~~~vaf-SPDGk~l~~~~~d~~v~vwd~~t~   93 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK----------------KIVKVIDTGYA---VHISRM-SASGRYLLVIGRDARIDMIDLWAK   93 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC----------------SEEEEEECCSS---EEEEEE-CTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCC----------------cEEEEEeCCCC---eeEEEE-CCCCCEEEEEeCCCCEEEEEccCC
Confidence            45655 4999999999988                78888887643   889998 999999999999999999999988


Q ss_pred             ceEEE--E---ecccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCC
Q 023246          154 KLVRL--M---VGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       154 ~~~~~--~---~~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~  197 (285)
                      +....  +   .+|.+.+.+++|+|||+++ +++..++.+++||.....+
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             SCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             ceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            75433  2   2566778889999999986 5555899999999987764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=8.8e-13  Score=103.49  Aligned_cols=205  Identities=9%  Similarity=0.085  Sum_probs=126.9

Q ss_pred             cceeEEEEcCCCCcEE-EEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--
Q 023246            4 IRLNAIVIDPRNPNYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--   80 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--   80 (285)
                      +.|..++|+||+ ++| +++..|+.|++|++........           .... ..+...+..++|+|+|++|+++.  
T Consensus        37 ~~v~~la~spDG-~~L~v~~~~d~~i~~~~i~~~~~~~~-----------~~~~-~~~~~~p~~l~~spDg~~l~v~~~~  103 (333)
T d1ri6a_          37 GQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALT-----------FAAE-SALPGSLTHISTDHQGQFVFVGSYN  103 (333)
T ss_dssp             SCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEE-----------EEEE-EECSSCCSEEEECTTSSEEEEEETT
T ss_pred             CCEeEEEEeCCC-CEEEEEECCCCeEEEEEEeCCCCcEE-----------Eeee-cccCCCceEEEEcCCCCEEeecccC
Confidence            568899999997 555 5566689999999986542100           0000 12334567899999999887753  


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEe--ecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEE
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY--SGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~  157 (285)
                      ++.|.+|+....                ......  ..+...  +.++.+ ++++++++.++ .+..+.+|+........
T Consensus       104 ~~~v~~~~~~~~----------------~~~~~~~~~~~~~~--~~~v~~-s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_         104 AGNVSVTRLEDG----------------LPVGVVDVVEGLDG--CHSANI-SPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             TTEEEEEEEETT----------------EEEEEEEEECCCTT--BCCCEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CCceeeeccccc----------------cceecccccCCCcc--ceEEEe-eecceeeeccccccceeeEEEeccCCcce
Confidence            788999988755                222222  233333  778887 99999887765 45679999977654332


Q ss_pred             EE------ecccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCCC--CC------CCC---CCcccceeeccccCCCce
Q 023246          158 LM------VGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FP------PLP---DNAEKIMKANKQGREDHS  219 (285)
Q Consensus       158 ~~------~~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~--~~------~~~---~~~~~~~~~~~~~~~~~~  219 (285)
                      ..      ..+......++|++++.+++... ..+...+|+.....  ..      ...   ..................
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~  244 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  244 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence            21      12334567899999999865554 55677777754322  10      011   011111122222223345


Q ss_pred             EEEeCCCCeEEEEEecccccc
Q 023246          220 RITLTPDVIMHVLRLQRRQTL  240 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~~  240 (285)
                      +++...++.+.+|++......
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~  265 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSV  265 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCC
T ss_pred             eeecccCCeEEEEEEcCCCCE
Confidence            667778899999998765443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.3e-12  Score=102.58  Aligned_cols=191  Identities=8%  Similarity=0.068  Sum_probs=122.3

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-CCcEEEEEcCCCCC
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DELVYLFEKNMGLG   94 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d~~i~iwd~~~~~~   94 (285)
                      ..+++++.|++|++|++.....+            ..... ..|.+.+..++|+|||++|++ +. |+.|++|++...  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l------------~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--   69 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGAL------------TLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--   69 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE------------EEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT--
T ss_pred             EEEEECCCCCcEEEEEEcCCCCe------------EEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--
Confidence            45688889999999999754311            11111 356788999999999998755 44 899999999765  


Q ss_pred             CCCCCCCCccccCCCCceEeeccc-CceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEEE--EecccccceEeE
Q 023246           95 PSPLSLSPEDLQKREEPQVYSGHR-NSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRL--MVGDRHVVNQLE  170 (285)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~  170 (285)
                                    .....+..+. ....+..++| +|+|+++++++ .++.|.+|+.........  ...+...+.++.
T Consensus        70 --------------~~~~~~~~~~~~~~~p~~l~~-spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~  134 (333)
T d1ri6a_          70 --------------DGALTFAAESALPGSLTHIST-DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN  134 (333)
T ss_dssp             --------------TCCEEEEEEEECSSCCSEEEE-CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE
T ss_pred             --------------CCcEEEeeecccCCCceEEEE-cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEE
Confidence                          2322322221 1122678997 99999988876 477899999876654433  335667789999


Q ss_pred             EcCCCCeEEEEe-cCCcEEEEcCCCCCCCCC-------CCCcccceeeccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          171 PHPHIPMFATCG-IEKTVKLWAPMPTDFPPL-------PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       171 ~~p~~~~l~t~~-~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      ++|++++++.++ .+..|.+|+.........       .........+.........+++....+...+|+....
T Consensus       135 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~  209 (333)
T d1ri6a_         135 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP  209 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             eeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence            999999977776 456799999765432110       0011111222222222334455566677777776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=3.4e-13  Score=106.29  Aligned_cols=155  Identities=5%  Similarity=-0.050  Sum_probs=104.6

Q ss_pred             EEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-ccCceeeeeEEEecCCCcEE-EEecCCC
Q 023246           67 LAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYV-MSGSDCG  143 (285)
Q Consensus        67 i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l-~~~~~dg  143 (285)
                      ++|++++++|+++ .+++|.+||+.+.                +.+.++.. +...  +.+++| +|+|+++ +++..++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~----------------~~~~t~~~~~~~~--p~~l~~-spDG~~l~v~~~~~~   62 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD----------------TVYKSCVMPDKFG--PGTAMM-APDNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT----------------EEEEEEECSSCCS--SCEEEE-CTTSSEEEEEETTTT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC----------------CEEEEEEcCCCCC--cceEEE-CCCCCEEEEEECCCC
Confidence            4688999999986 5999999999988                67777764 3333  778997 9999987 5667899


Q ss_pred             eEEEEecCCCceEEEEeccc------ccceEeEEcCCCCeEEEEe------------cCCcEEEEcCCCCCC-CCCCCCc
Q 023246          144 HLFIWKKKGGKLVRLMVGDR------HVVNQLEPHPHIPMFATCG------------IEKTVKLWAPMPTDF-PPLPDNA  204 (285)
Q Consensus       144 ~v~vwd~~~~~~~~~~~~h~------~~v~~~~~~p~~~~l~t~~------------~d~~i~iwd~~~~~~-~~~~~~~  204 (285)
                      .|++||+.+++.+..+....      ..+..++|+|+|+++++++            .++.+.+|+...++. ..+..+.
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  142 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  142 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee
Confidence            99999999999888775322      3467899999999977665            367788888766542 2221111


Q ss_pred             cc-ceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          205 EK-IMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       205 ~~-~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      .+ .........+...++ .  ++.+.+|++.+.+....+
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         143 MPRQVYLMRAADDGSLYV-A--GPDIYKMDVKTGKYTVAL  179 (346)
T ss_dssp             CCSSCCCEEECTTSCEEE-E--SSSEEEECTTTCCEEEEE
T ss_pred             ccCceEEEEecCCCEEEE-e--CCcceEEEccCCCEEEEE
Confidence            11 111111122233333 3  245788887776655544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=2e-13  Score=108.40  Aligned_cols=228  Identities=10%  Similarity=0.027  Sum_probs=131.3

Q ss_pred             ceeEEEEcCCCCcEEEE----------eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC
Q 023246            5 RLNAIVIDPRNPNYFAV----------GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE   74 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~t----------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~   74 (285)
                      .+..++||||+ ++|++          +..|+.|++||+.+++....+.....        ...........++|+|+++
T Consensus        48 ~~~~~a~SpDg-~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          48 FLPNPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA--------PRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             SSCEEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--------CCCCBSCCGGGEEECTTSS
T ss_pred             CCCceEEcCCC-CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc--------ceeecCCCCceEEEecCCC
Confidence            34578999997 55554          34578999999998875432211100        0011122345689999998


Q ss_pred             EEEEe---cCCcEEEEEcCCCCCCCCCCCCC-----------------c------cccCCCCceEeecc----cCceeee
Q 023246           75 LLISY---NDELVYLFEKNMGLGPSPLSLSP-----------------E------DLQKREEPQVYSGH----RNSQTVK  124 (285)
Q Consensus        75 ~l~s~---~d~~i~iwd~~~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~----~~~~~i~  124 (285)
                      +++..   .+..+.+|+..++..........                 .      ..........+...    .....+.
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  198 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN  198 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCS
T ss_pred             eeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceee
Confidence            76653   36789999998763100000000                 0      00000000111000    0001133


Q ss_pred             eEEEecCCCcEEEEecCCCeEEEEecCCCceEE--EEecc----------cccceEeEEcCCCCeEEEEecC--------
Q 023246          125 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMVGD----------RHVVNQLEPHPHIPMFATCGIE--------  184 (285)
Q Consensus       125 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~--~~~~h----------~~~v~~~~~~p~~~~l~t~~~d--------  184 (285)
                      ...+ .+++..++.++.++.+++|++..++...  ....+          ......++++|++..++....+        
T Consensus       199 ~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         199 HPAY-SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             CCEE-ETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             eccc-cCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence            4454 5667778888999999999998776432  12211          1234558889998886655433        


Q ss_pred             --CcEEEEcCCCCCC-CCCCCCcccceeeccccCCCc--eEEEeCCCCeEEEEEecccccceeEe
Q 023246          185 --KTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH--SRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       185 --~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                        ..|.+||+.+++. .++. ....+..+.+ .++++  +++++..|+.|++||+++++.+..+.
T Consensus       278 ~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~-spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         278 ASRFVVVLDAKTGERLAKFE-MGHEIDSINV-SQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             CEEEEEEEETTTCCEEEEEE-EEEEECEEEE-CCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCeEEEEeCCCCcEEEEec-CCCCEEEEEE-cCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence              3699999987764 3332 2333444433 44443  45678889999999999998876553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.46  E-value=2.5e-11  Score=96.76  Aligned_cols=198  Identities=8%  Similarity=-0.073  Sum_probs=126.9

Q ss_pred             ccceeEEEEcCCCCcEEEEe----eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            3 SIRLNAIVIDPRNPNYFAVG----GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      .+++.+++++|++..++++.    +.++.|.+||..+++.+              ..+ ..+..  ..++|+|||++|+.
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~--------------~~~-~~~~~--~~~a~SpDG~~l~v   82 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--------------GHV-NGGFL--PNPVAAHSGSEFAL   82 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE--------------EEE-eCCCC--ccEEEcCCCCEEEE
Confidence            46788999999974444432    23467999999988732              222 22222  26899999998876


Q ss_pred             ec-----------CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCcee-----eeeEEEecCCCcEEEEe--c
Q 023246           79 YN-----------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT-----VKGVNFFGPNDEYVMSG--S  140 (285)
Q Consensus        79 ~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~l~~~--~  140 (285)
                      +.           ++.|.+||..++                +.+..+..+.....     ...+.| +++++.++..  .
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~~v~~~~  145 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTF----------------LPIADIELPDAPRFDVGPYSWMNAN-TPNNADLLFFQFA  145 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCC----------------cEEEEEecCCcceeEeccCCCcEEE-EeCCCcEEEEEEc
Confidence            42           477999999987                55555554443210     234565 7777765544  4


Q ss_pred             CCCeEEEEecCCCceEEEEecccccceEeEEcCCCCe-EEEEecCCcEEEEcCCCCCCCCC-C----CCcccceeecccc
Q 023246          141 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPL-P----DNAEKIMKANKQG  214 (285)
Q Consensus       141 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~-~----~~~~~~~~~~~~~  214 (285)
                      .++.+.+|+....+.....    ..+.++.++|+++. +++.+.|+.+.+|+......... .    .............
T Consensus       146 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (373)
T d2madh_         146 AGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEE
Confidence            4667888888776655443    34667889999886 67888999999999877653221 1    1111111111122


Q ss_pred             CCCceEEEeCCCCeEEEEEecccc
Q 023246          215 REDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       215 ~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .....++..+.++.+++|+.....
T Consensus       222 ~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         222 NKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             CCCceEEEecCCceEEEEEcCCCe
Confidence            334456677888999999877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=2.9e-12  Score=101.51  Aligned_cols=232  Identities=9%  Similarity=0.001  Sum_probs=136.8

Q ss_pred             ceeEEEEcCCCCcEEEEe-----eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe
Q 023246            5 RLNAIVIDPRNPNYFAVG-----GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY   79 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~   79 (285)
                      |+.-.+.+|++ ..++..     ..+++|.+||..+++.+.              .+ ..+  ....++|||||++|+..
T Consensus         3 p~~~~a~spdg-~~~~v~~~~~~~~~~~v~v~D~~tg~~~~--------------~~-~~g--~~~~~a~SpDg~~l~v~   64 (355)
T d2bbkh_           3 PRILEAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIG--------------MI-DGG--FLPNPVVADDGSFIAHA   64 (355)
T ss_dssp             CCBCCCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEE--------------EE-EEC--SSCEEEECTTSSCEEEE
T ss_pred             CcEeEeeCCCC-CEEEEEecccCCCcCeEEEEECCCCcEEE--------------EE-ECC--CCCceEEcCCCCEEEEE
Confidence            45555778987 555443     345679999999987422              22 212  23368999999976542


Q ss_pred             -----------cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc-----eeeeeEEEecCCCcEEEEe--cC
Q 023246           80 -----------NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-----QTVKGVNFFGPNDEYVMSG--SD  141 (285)
Q Consensus        80 -----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~--~~  141 (285)
                                 .++.|.+||..++                +....+..+...     .....+.| ++++++++.+  +.
T Consensus        65 ~~~~~~~~~g~~d~~v~v~D~~t~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          65 STVFSRIARGERTDYVEVFDPVTL----------------LPTADIELPDAPRFLVGTYPWMTSL-TPDGKTLLFYQFSP  127 (355)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTTC----------------CEEEEEEETTCCCCCBSCCGGGEEE-CTTSSEEEEEECSS
T ss_pred             eCCCccccccCCCCEEEEEECCCC----------------CEEEEEecCCcceeecCCCCceEEE-ecCCCeeEEecCCC
Confidence                       2678999999887                455554432221     11356776 9999987765  45


Q ss_pred             CCeEEEEecCCCceEEEEecc---------------------------------------------cccceEeEEcCCCC
Q 023246          142 CGHLFIWKKKGGKLVRLMVGD---------------------------------------------RHVVNQLEPHPHIP  176 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h---------------------------------------------~~~v~~~~~~p~~~  176 (285)
                      +..+.+|+..+++.+..+..+                                             ...+....+.+++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  207 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCC
Confidence            678999999888765543321                                             11123345556666


Q ss_pred             eEEEEecCCcEEEEcCCCCCCCCCC---CCcccceeecc---------ccCCCceEEEeC----------CCCeEEEEEe
Q 023246          177 MFATCGIEKTVKLWAPMPTDFPPLP---DNAEKIMKANK---------QGREDHSRITLT----------PDVIMHVLRL  234 (285)
Q Consensus       177 ~l~t~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~s----------~d~~i~vwd~  234 (285)
                      .++.++.++.+++|++..+....+.   .+.........         ...+...++..+          ....|.+||.
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            7778888899999998776542221   11111111100         111222222211          1247899999


Q ss_pred             cccccceeE---------eeeccccc--cCCCCCcCeEEEeecCCCCC
Q 023246          235 QRRQTLAYR---------ERRYNAAD--FESDEEEGETYLLGFSDSDA  271 (285)
Q Consensus       235 ~~~~~~~~~---------~~~~~~~~--~~~~~~~~~v~~~~~~~~~~  271 (285)
                      .+.+.+..+         .+++++..  ++....++.|++++...++.
T Consensus       288 ~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         288 KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             TTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            887665543         34555543  23444556788888777653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=2.6e-12  Score=106.11  Aligned_cols=152  Identities=10%  Similarity=0.028  Sum_probs=110.0

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec------
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN------   80 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~------   80 (285)
                      ..+.|.+++ .++.  ..|+.+.+||+.+++....          .....+..|...|.++.|||||++|+...      
T Consensus        20 ~~~~W~~d~-~~~~--~~~~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          20 YSLRWISDH-EYLY--KQENNILVFNAEYGNSSVF----------LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCCEECSSS-EEEE--ESSSCEEEEETTTCCEEEE----------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             cCCEeCCCC-EEEE--EcCCcEEEEECCCCCEEEE----------EchhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            357899975 6665  3578999999999873211          11222366778899999999999887643      


Q ss_pred             ----CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceE
Q 023246           81 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        81 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  156 (285)
                          ++.+.+||+.++                 .+..+..+...  +..+.| +|+|+.++... ++.+++|+..+++..
T Consensus        87 r~s~~~~~~l~d~~~~-----------------~~~~l~~~~~~--~~~~~~-SPDG~~ia~~~-~~~l~~~~~~~g~~~  145 (470)
T d2bgra1          87 RHSYTASYDIYDLNKR-----------------QLITEERIPNN--TQWVTW-SPVGHKLAYVW-NNDIYVKIEPNLPSY  145 (470)
T ss_dssp             SSCEEEEEEEEETTTT-----------------EECCSSCCCTT--EEEEEE-CSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred             eeccCceEEEEECCCC-----------------cccccccCCcc--cccccc-ccCcceeeEee-cccceEEECCCCcee
Confidence                367899999886                 34455666655  888886 99999999864 678999999988776


Q ss_pred             EEEecc------------------cccceEeEEcCCCCeEEEEecCCc-EEEEcC
Q 023246          157 RLMVGD------------------RHVVNQLEPHPHIPMFATCGIEKT-VKLWAP  192 (285)
Q Consensus       157 ~~~~~h------------------~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~  192 (285)
                      .....+                  .+....+.|+|||++|+....|.+ +..|.+
T Consensus       146 ~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            543321                  233466889999999999876644 555554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.36  E-value=6.4e-11  Score=94.34  Aligned_cols=182  Identities=8%  Similarity=-0.015  Sum_probs=113.0

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVY   85 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~   85 (285)
                      ..++.++|++...+++.+.|+++.+|+...++......         ......++......+.+++++.+++.+.++.+.
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  237 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV---------GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKIL  237 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe---------eeccccCccceeeeEEECCCceEEEecCCceEE
Confidence            45788999887788899999999999998776322110         001112223334556677777777777899999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE---------ecCCCcEEEEecCCCeEEEEecCCCceE
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---------FGPNDEYVMSGSDCGHLFIWKKKGGKLV  156 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~l~~~~~dg~v~vwd~~~~~~~  156 (285)
                      +|+..........   .....   ..........+.....+++         ....+..++....++.+.+||..+++.+
T Consensus       238 ~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~  311 (373)
T d2madh_         238 QADISAAGATNKA---PIDAL---SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             EEEcCCCeEEEEE---eeccc---cCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEE
Confidence            9998765200000   00000   0000000000000122222         1333445556677889999999999999


Q ss_pred             EEEecccccceEeEEcCCCCe--EEEEecCCcEEEEcCCCCCC-CCCCCC
Q 023246          157 RLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPTDF-PPLPDN  203 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~~~~~-~~~~~~  203 (285)
                      ..+. +...+..++|+|||+.  +++++.|++|++||+.+++. ..+..+
T Consensus       312 ~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         312 SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence            8876 5567899999999985  56888999999999988874 445433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=5.8e-11  Score=94.68  Aligned_cols=209  Identities=9%  Similarity=0.004  Sum_probs=113.9

Q ss_pred             eEEEEcCCCCcEEEEe----------eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE
Q 023246            7 NAIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL   76 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l   76 (285)
                      ..++|+||+ ..|++.          ..|++|++||..+++....+..+...     .   .........++|+|||++|
T Consensus        68 ~~~a~spDg-~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~-----~---~~~g~~p~~~a~SpDGk~l  138 (368)
T d1mdah_          68 SLAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP-----R---FSVGPRVHIIGNCASSACL  138 (368)
T ss_dssp             CEEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC-----S---CCBSCCTTSEEECTTSSCE
T ss_pred             CcceECCCC-CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc-----e---ecccCCccceEECCCCCEE
Confidence            458899987 666654          34788999999988743322111000     0   0111223368999999977


Q ss_pred             EEe--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCce-----eeeeEEE---------------------
Q 023246           77 ISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ-----TVKGVNF---------------------  128 (285)
Q Consensus        77 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~---------------------  128 (285)
                      +.+  .++.+.+||+.+.                +....+..+....     ....+.+                     
T Consensus       139 ~va~~~~~~v~~~d~~~~----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPGA----------------SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             EEEECSSSCEEEEEETTT----------------EEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             EEEeCCCCeEEEEECCCC----------------cEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence            664  4899999999876                2333222211100     0000111                     


Q ss_pred             ----------------ecCCCcEEEEecCCCeEEEEecCCCceEEEEe--cc----------cccceEeEEcCCCCeEEE
Q 023246          129 ----------------FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GD----------RHVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       129 ----------------~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~h----------~~~v~~~~~~p~~~~l~t  180 (285)
                                      +.+++..+.+  ..+.+++++...+.......  .+          ......++++|++..++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence                            0222222222  23344555544433322111  10          112345788888887554


Q ss_pred             EecC---------CcEEEEcCCCCCC-CCCCCCcccceeeccccCCCc--eEEEeCCCCeEEEEEecccccceeEe
Q 023246          181 CGIE---------KTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDH--SRITLTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       181 ~~~d---------~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ...+         ..|.+||..+++. ..+. ....+..+.+ +++++  ++++...++.|++||..+++.+..++
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~-spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIA-AQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEE-CCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEE-CCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            4322         2588999988774 3332 3333333333 44443  45678889999999999988765543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=2.9e-09  Score=87.51  Aligned_cols=110  Identities=9%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             EEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeec-----ccCceeeeeEEEecCCCcEEEEec
Q 023246           66 GLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-----HRNSQTVKGVNFFGPNDEYVMSGS  140 (285)
Q Consensus        66 ~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~  140 (285)
                      .+.|.++++++.. .++.+.+||+.++                +....+..     +...  |.++.| +||+++|+.++
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~----------------~~~~~~~~~~~~~~~~~--i~~~~~-SpDg~~i~~~~   80 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYG----------------NSSVFLENSTFDEFGHS--INDYSI-SPDGQFILLEY   80 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTC----------------CEEEEECTTTTTTSSSC--CCEEEE-CTTSSEEEEEE
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCC----------------CEEEEEchhhhhhccCc--cceeEE-CCCCCEEEEEE
Confidence            5789999887654 5788999999987                33333332     3333  889997 99999999875


Q ss_pred             C---------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          141 D---------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       141 ~---------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      .         ++.+.+||+.+++ +..+..|...+..+.|+|+|+++|... ++.+.+|+..++..
T Consensus        81 ~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~  144 (470)
T d2bgra1          81 NYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS  144 (470)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred             CCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCce
Confidence            3         5788999999776 455777888999999999999999865 67899999987764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.07  E-value=9.6e-09  Score=82.41  Aligned_cols=149  Identities=10%  Similarity=0.020  Sum_probs=98.2

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCCCc--cccc-------------ccccCCCCCcceEEEEEecCCCEEEEe--
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPV--DTFC-------------PRHLIGKNNIHITGLAYSNTSELLISY--   79 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~h~~~v~~i~~s~~~~~l~s~--   79 (285)
                      ..|++|+.+|+|++|++.+++.+..+....+-  ..+.             .......|........++|||++|+..  
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            35788899999999999998866554321110  0000             000112344556666678999987664  


Q ss_pred             cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc--EEEEecCCC--------------
Q 023246           80 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE--YVMSGSDCG--------------  143 (285)
Q Consensus        80 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~dg--------------  143 (285)
                      .++.|.++|+.+.                +....+..... ..+..++| +|+++  |++..+.+.              
T Consensus        92 ~~~rVavIDl~t~----------------k~~~ii~iP~g-~gphgi~~-spdg~t~YV~~~~~~~v~~~~dg~~~~~~~  153 (441)
T d1qnia2          92 ANTRVARIRLDIM----------------KTDKITHIPNV-QAIHGLRL-QKVPKTNYVFCNAEFVIPQPNDGTDFSLDN  153 (441)
T ss_dssp             TTTEEEEEETTTT----------------EEEEEEECTTC-CCEEEEEE-CCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred             CCCEEEEEECCCC----------------cEeeEEecCCC-CCccceEE-eccCCEEEEEeccCCcccccCccccccccc
Confidence            3899999999887                55555543211 23888997 89888  555444332              


Q ss_pred             ---eEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecC
Q 023246          144 ---HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE  184 (285)
Q Consensus       144 ---~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d  184 (285)
                         .+..+|..+.+...++... +.+..++++|+|+++++.+.+
T Consensus       154 ~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         154 SYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred             ccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecC
Confidence               2456888888888777654 467889999999997766643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.04  E-value=5.2e-09  Score=83.98  Aligned_cols=193  Identities=11%  Similarity=0.035  Sum_probs=118.9

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC--EEEEecCCcE-
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELV-   84 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~s~~d~~i-   84 (285)
                      ...++|||..++++...++.|.++|+.+++..              ..+.-.+...+..++|+|+++  +++...+..+ 
T Consensus        76 ~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~--------------~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          76 MTDGRYDGKYLFINDKANTRVARIRLDIMKTD--------------KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             EETTEEEEEEEEEEETTTTEEEEEETTTTEEE--------------EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             eecccCCCCEEEEEcCCCCEEEEEECCCCcEe--------------eEEecCCCCCccceEEeccCCEEEEEeccCCccc
Confidence            34457887445566678899999999988732              222123456788999999997  5554444333 


Q ss_pred             -----------------EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------
Q 023246           85 -----------------YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------  141 (285)
Q Consensus        85 -----------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------  141 (285)
                                       ..+|..+.                +....+.....   ...+.+ +|+|+++++.+.      
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~----------------~v~~qI~v~~~---p~~v~~-spdGk~a~vt~~nse~~~  201 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETM----------------DVAWQVIVDGN---LDNTDA-DYTGKYATSTCYNSERAV  201 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTC----------------SEEEEEEESSC---CCCEEE-CSSSSEEEEEESCTTCCS
T ss_pred             ccCcccccccccccceEEeecCccc----------------eeeEEEecCCC---ccceEE-CCCCCEEEEEecCCCceE
Confidence                             34565544                33333332222   566776 888887766543      


Q ss_pred             -----------------------------------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeE-EEEecCC
Q 023246          142 -----------------------------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEK  185 (285)
Q Consensus       142 -----------------------------------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~t~~~d~  185 (285)
                                                         ++.+.+++....+.+..+.... ....++++|||+++ +++..++
T Consensus       202 ~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~  280 (441)
T d1qnia2         202 DLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSP  280 (441)
T ss_dssp             SHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSS
T ss_pred             EEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCC
Confidence                                               3455566666666777777654 46789999999985 5667899


Q ss_pred             cEEEEcCCCCC--CCCCCCCccccee--------ec-cccCCCceEEEeCCCCeEEEEEec
Q 023246          186 TVKLWAPMPTD--FPPLPDNAEKIMK--------AN-KQGREDHSRITLTPDVIMHVLRLQ  235 (285)
Q Consensus       186 ~i~iwd~~~~~--~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~s~d~~i~vwd~~  235 (285)
                      +|.+||++...  +.....+...+..        +. ........+.+..-|.+|..|++.
T Consensus       281 tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         281 TVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             BEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            99999985421  0000011111110        00 012234466778889999999985

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=5.3e-08  Score=73.35  Aligned_cols=223  Identities=9%  Similarity=0.018  Sum_probs=122.9

Q ss_pred             eEEEEcCCCCcEEEE-eeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec-CCcE
Q 023246            7 NAIVIDPRNPNYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELV   84 (285)
Q Consensus         7 ~~~~~s~~~~~~l~t-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~-d~~i   84 (285)
                      .++++++++ +++++ .+..+.+..++......              .... ..-......++++++++++++.. .+.+
T Consensus        17 ~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~--------------~~~~-~~~~~~p~gvav~~~g~i~v~d~~~~~i   80 (260)
T d1rwia_          17 SGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGT--------------TVLP-FNGLYQPQGLAVDGAGTVYVTDFNNRVV   80 (260)
T ss_dssp             EEEEECTTC-CEEEEECSSSCEEEEEC----CE--------------EECC-CCSCCSCCCEEECTTCCEEEEETTTEEE
T ss_pred             CEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceE--------------EEec-cCCccCceEEEEcCCCCEEEeeeeecee
Confidence            688999986 65554 45557777776654321              0000 11122356789999999888765 5555


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      ++++....                ..+......   ....++++ +++++++++-.....+..++...............
T Consensus        81 ~~~~~~~~----------------~~~~~~~~~---~~p~~iav-d~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  140 (260)
T d1rwia_          81 TLAAGSNN----------------QTVLPFDGL---NYPEGLAV-DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN  140 (260)
T ss_dssp             EECTTCSC----------------CEECCCCSC---CSEEEEEE-CTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCC
T ss_pred             eeeeeccc----------------eeeeeeeee---eecccccc-cccceeEeeccccccccccccccceeeeeeecccC
Confidence            55543322                111111111   22678887 89999888877777888888765443322222234


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCCC-CCcccceeeccccCCCceEEEeCCCCeEEEEEecccccceeE
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR  243 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~  243 (285)
                      ....++++|+++.+++...++.|..++........+. ........+. ...++.++++-...+.|..++...... ...
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~  218 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTS-TVL  218 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCC-EEC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeE-EEE
Confidence            5688999999998888888889999998765432221 1111111111 122344666666667777665433211 111


Q ss_pred             eee--ccccccCCCCCcCeEEEeecCC
Q 023246          244 ERR--YNAADFESDEEEGETYLLGFSD  268 (285)
Q Consensus       244 ~~~--~~~~~~~~~~~~~~v~~~~~~~  268 (285)
                      ...  .....++.+. +|.+|+.+...
T Consensus       219 ~~~~~~~P~~i~~d~-~g~l~vad~~~  244 (260)
T d1rwia_         219 PFTGLNTPLAVAVDS-DRTVYVADRGN  244 (260)
T ss_dssp             CCCSCCCEEEEEECT-TCCEEEEEGGG
T ss_pred             ccCCCCCeEEEEEeC-CCCEEEEECCC
Confidence            111  0112333333 35688876654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.92  E-value=4.9e-09  Score=83.26  Aligned_cols=72  Identities=8%  Similarity=-0.015  Sum_probs=54.4

Q ss_pred             eeEEEecCCCcEEEEecC---------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCe--EEEEecCCcEEEEcC
Q 023246          124 KGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM--FATCGIEKTVKLWAP  192 (285)
Q Consensus       124 ~~~~~~~~~~~~l~~~~~---------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~  192 (285)
                      ..+++ ++++..++....         ...|.+||..+++.+..+.. ...+..++|+||++.  ++++..|+.|++||.
T Consensus       267 ~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         267 QMVAK-LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SCEEE-ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eeEEE-cCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            34565 777776654422         24699999999999887764 457899999999974  566778899999999


Q ss_pred             CCCCC
Q 023246          193 MPTDF  197 (285)
Q Consensus       193 ~~~~~  197 (285)
                      .+++.
T Consensus       345 ~tgk~  349 (368)
T d1mdah_         345 ASDQD  349 (368)
T ss_dssp             SSCEE
T ss_pred             CCCCE
Confidence            88763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=3.3e-07  Score=68.83  Aligned_cols=155  Identities=10%  Similarity=0.017  Sum_probs=102.8

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcE
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV   84 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i   84 (285)
                      ...+++++++ +++++....+.+++++-.+....              ..  ........++++.++++++++. ....+
T Consensus        59 p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~--------------~~--~~~~~~p~~iavd~~g~i~v~d~~~~~~  121 (260)
T d1rwia_          59 PQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTV--------------LP--FDGLNYPEGLAVDTQGAVYVADRGNNRV  121 (260)
T ss_dssp             CCCEEECTTC-CEEEEETTTEEEEECTTCSCCEE--------------CC--CCSCCSEEEEEECTTCCEEEEEGGGTEE
T ss_pred             ceEEEEcCCC-CEEEeeeeeceeeeeeeccceee--------------ee--eeeeeecccccccccceeEeeccccccc
Confidence            3578899975 77777766666666554433211              00  1123457899999999987774 36667


Q ss_pred             EEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEecccc
Q 023246           85 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH  164 (285)
Q Consensus        85 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  164 (285)
                      ..++....                 ....+.. .......++++ +++++.+++....+.|..++.............-.
T Consensus       122 ~~~~~~~~-----------------~~~~~~~-~~~~~p~~i~~-~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  182 (260)
T d1rwia_         122 VKLAAGSK-----------------TQTVLPF-TGLNDPDGVAV-DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT  182 (260)
T ss_dssp             EEECTTCS-----------------SCEECCC-CSCCSCCEEEE-CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC
T ss_pred             cccccccc-----------------eeeeeee-cccCCcceeee-cCCCCEeeeccccccccccccccceeeeeeccccC
Confidence            77776543                 2222211 11122577887 88999888888889999999875544332234446


Q ss_pred             cceEeEEcCCCCeEEEEecCCcEEEEcCCCCC
Q 023246          165 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD  196 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~  196 (285)
                      ....|+++++++++++....+.|..++.....
T Consensus       183 ~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         183 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             SEEEEEECTTCCEEEEETTTTEEEEECTTCSC
T ss_pred             CCccceeeeeeeeeeeecCCCEEEEEeCCCCe
Confidence            67889999999988888778888888876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.85  E-value=2.6e-07  Score=73.11  Aligned_cols=180  Identities=10%  Similarity=0.024  Sum_probs=99.0

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-CC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-DE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d~   82 (285)
                      .+.++.|+|++..++++......|.+|+.........          .............+.++|+|+++++.. .. ++
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~----------~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL----------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE----------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceee----------ccceeecCCCCceEEEEECCCCceEEEeccCCC
Confidence            3678999998743444444456788887653321100          001111223457889999999997755 44 89


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCc-eEeecccCceeeeeEEEecCCCcEEEEecC------CCeEEEEecCCCce
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGGKL  155 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~  155 (285)
                      +|.+|+................+...... ..............+.+ +|+|++++++..      .+.|..|++.....
T Consensus       216 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL-TFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE-CTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEE-CCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            99999997652000000000000000000 00000011112456776 999999987642      23477777654322


Q ss_pred             EEE-E-----ecccccceEeEEcC-CCCeEEEE-ecCCcEEEEcCCCC
Q 023246          156 VRL-M-----VGDRHVVNQLEPHP-HIPMFATC-GIEKTVKLWAPMPT  195 (285)
Q Consensus       156 ~~~-~-----~~h~~~v~~~~~~p-~~~~l~t~-~~d~~i~iwd~~~~  195 (285)
                      +.. .     .........++++| +|++|+.+ ..++.|.+|+.+..
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            221 1     11234567899998 78986555 57789999987554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.79  E-value=4.2e-07  Score=69.88  Aligned_cols=154  Identities=9%  Similarity=0.034  Sum_probs=99.2

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCc
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL   83 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~   83 (285)
                      .+..++++|++ +++++...+++|..|+......              .   +......+.+++|+++|+++++. .++.
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~~~--------------~---~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ--------------I---HATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE--------------E---EEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCCCEE--------------E---EEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            46789999986 8999999999888887553220              0   02334578999999999988885 5777


Q ss_pred             EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEec--
Q 023246           84 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--  161 (285)
Q Consensus        84 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--  161 (285)
                      +..++.....               .....+...........+.+ .++++++++.+.++.+..++...+.....+..  
T Consensus        91 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~n~i~~-~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~  154 (302)
T d2p4oa1          91 IPVVSLVKSD---------------GTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM  154 (302)
T ss_dssp             CEEEEEECTT---------------SCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred             EEEEEecccc---------------cceeeccccCCccccceeEE-ccCCCEEeeccccccceeeeccCCcceeEecCCc
Confidence            8888775441               12222322222233778886 89999999888889999988876654322221  


Q ss_pred             ------c--cccceEeEEcCCCCeEEEEecCCcEEEEcCC
Q 023246          162 ------D--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPM  193 (285)
Q Consensus       162 ------h--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~  193 (285)
                            +  ...+..+.++. +..+++....+.|..++..
T Consensus       155 ~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         155 LARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             GSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBC
T ss_pred             cceeeccCcccccccccccC-CceeeecCCCCeEEecccc
Confidence                  0  11234455543 2335555566777777653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.76  E-value=4.2e-06  Score=64.63  Aligned_cols=203  Identities=8%  Similarity=0.093  Sum_probs=119.3

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec---C
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---D   81 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~---d   81 (285)
                      .+..++|++++ +++++-...+.|..|+..+++..              ... .........++++++|+++++..   .
T Consensus        41 ~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~--------------~~~-~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          41 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIK--------------RPF-VSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--------------EEE-ECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             CcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEE--------------EEE-eCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            34688999986 78887778888888888765421              111 22334578999999999877742   2


Q ss_pred             Cc--EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC------CCeEEEEecCCC
Q 023246           82 EL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD------CGHLFIWKKKGG  153 (285)
Q Consensus        82 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~v~vwd~~~~  153 (285)
                      ..  +...+....                .................+.+ +++|++.++...      .+.+..++.. +
T Consensus       105 ~~~~i~~~~~~~~----------------~~~~~~~~~~~~~~~nd~~~-d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g  166 (319)
T d2dg1a1         105 STGGIFAATENGD----------------NLQDIIEDLSTAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSPD-F  166 (319)
T ss_dssp             SCCEEEEECTTSC----------------SCEEEECSSSSCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECTT-S
T ss_pred             cceeEEEEcCCCc----------------eeeeeccCCCcccCCcceeE-EeccceeecccccccccCcceeEEEecc-c
Confidence            23  444444433                12222222222223677887 999987776432      3456666655 3


Q ss_pred             ceEEEEecccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCC-CC---------CCCCcccceeeccccCCCceEEE
Q 023246          154 KLVRLMVGDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDF-PP---------LPDNAEKIMKANKQGREDHSRIT  222 (285)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~  222 (285)
                      +.+..+...-...+.++|+|+++.| ++-+..+.|..|++..... ..         ...... . .-.....++.+.++
T Consensus       167 ~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~-P-dGl~vD~~G~l~Va  244 (319)
T d2dg1a1         167 RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG-P-DSCCIDSDDNLYVA  244 (319)
T ss_dssp             CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE-E-EEEEEBTTCCEEEE
T ss_pred             ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccc-e-eeeeEcCCCCEEEE
Confidence            3343333333456789999999865 5556678999998754321 00         000000 0 00111234557777


Q ss_pred             eCCCCeEEEEEecccccceeEe
Q 023246          223 LTPDVIMHVLRLQRRQTLAYRE  244 (285)
Q Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~  244 (285)
                      ....+.|.+++ ..++.+..+.
T Consensus       245 ~~~~g~V~~~~-p~G~~l~~i~  265 (319)
T d2dg1a1         245 MYGQGRVLVFN-KRGYPIGQIL  265 (319)
T ss_dssp             EETTTEEEEEC-TTSCEEEEEE
T ss_pred             EcCCCEEEEEC-CCCcEEEEEe
Confidence            77889999998 4565555553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.74  E-value=2e-06  Score=65.17  Aligned_cols=117  Identities=11%  Similarity=0.148  Sum_probs=84.8

Q ss_pred             CCcceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           60 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        60 h~~~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      .......+++.++|.++++. ..+.+.+++...                 +.+..+...........+++ +++++.+++
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-----------------~~~~~~g~~~~~~~~~~i~~-d~~g~i~v~  173 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----------------NVLHKFGCSKHLEFPNGVVV-NDKQEIFIS  173 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------CEEEEEECTTTCSSEEEEEE-CSSSEEEEE
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccCC-----------------ceeecccccccccccceeee-ccceeEEee
Confidence            34567789999999877774 467788887654                 34455543333233777887 899999999


Q ss_pred             ecCCCeEEEEecCCCceEEEEe--cccccceEeEEcCCCCeEEEEe-cCCcEEEEcCCCC
Q 023246          139 GSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT  195 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~  195 (285)
                      ....+.|++||.. ++.+.++.  ++......|+++|+++.+++-. .++.|.+++....
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~  232 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ  232 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             eccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence            8999999999975 77777764  3445678899999999877654 3557999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.65  E-value=5.5e-06  Score=63.43  Aligned_cols=153  Identities=10%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             ceEEEEEecCCCEEEEec-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           63 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      .+..++++|+|+++++.. +++|..|+....                  ...+......  +.+++| +++++++++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~------------------~~~~~~~~~~--~~gla~-~~dG~l~v~~~~   87 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN------------------QQIHATVEGK--VSGLAF-TSNGDLVATGWN   87 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC------------------EEEEEECSSE--EEEEEE-CTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC------------------EEEEEcCCCC--cceEEE-cCCCCeEEEecC
Confidence            578899999999998864 888888886532                  2333333433  889997 999999999888


Q ss_pred             CCeEEEEecCCCce-EEEEe--cccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-----------CCCCCcccc
Q 023246          142 CGHLFIWKKKGGKL-VRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-----------PLPDNAEKI  207 (285)
Q Consensus       142 dg~v~vwd~~~~~~-~~~~~--~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~  207 (285)
                      ++.+..++...... ...+.  ......+.+++.++++++++.+.++.+..+++......           .........
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             CceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            88888887654321 22221  23456889999999999988888888888887654311           000001111


Q ss_pred             eeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          208 MKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ..+.  .....++++.+..+.|+.++.....
T Consensus       168 ngi~--~~~~~l~~~~~~~~~i~~~~~~~~~  196 (302)
T d2p4oa1         168 NGLK--RFGNFLYVSNTEKMLLLRIPVDSTD  196 (302)
T ss_dssp             EEEE--EETTEEEEEETTTTEEEEEEBCTTS
T ss_pred             cccc--ccCCceeeecCCCCeEEeccccccc
Confidence            1111  1234567778888998888877643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.60  E-value=1.4e-05  Score=62.85  Aligned_cols=163  Identities=10%  Similarity=0.045  Sum_probs=93.8

Q ss_pred             cceEEEEEecCCCEEEEec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE-
Q 023246           62 IHITGLAYSNTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-  138 (285)
Q Consensus        62 ~~v~~i~~s~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-  138 (285)
                      ..+.++.|+|+|+++++..  ...|.+|+.....             ...................+.| +|++++++. 
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g-------------~~~~~~~~~~~~~g~gPr~i~f-~pdg~~~yv~  210 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASG-------------EVELVGSVDAPDPGDHPRWVAM-HPTGNYLYAL  210 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-------------CEEEEEEEECSSTTCCEEEEEE-CTTSSEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC-------------ceeeccceeecCCCCceEEEEE-CCCCceEEEe
Confidence            3478999999999777754  5678888865431             0011112222211123788997 999998855 


Q ss_pred             ecCCCeEEEEecCCCceE--EEEe-----------------cccccceEeEEcCCCCeEEEEec-CC-----cEEEEcCC
Q 023246          139 GSDCGHLFIWKKKGGKLV--RLMV-----------------GDRHVVNQLEPHPHIPMFATCGI-EK-----TVKLWAPM  193 (285)
Q Consensus       139 ~~~dg~v~vwd~~~~~~~--~~~~-----------------~h~~~v~~~~~~p~~~~l~t~~~-d~-----~i~iwd~~  193 (285)
                      ...+++|.+|++..++..  ....                 .+......+.++|+|++|+++.. +.     .|..|++.
T Consensus       211 ~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            556899999998765432  2111                 01123457899999999776642 22     36667654


Q ss_pred             CC-CCC------CCCCCcccceeeccccCCCc-eEEEeCCCCeEEEEEecccc
Q 023246          194 PT-DFP------PLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       194 ~~-~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~s~d~~i~vwd~~~~~  238 (285)
                      .. .+.      ...........+.....+++ ++++...++.|.+|+++...
T Consensus       291 ~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         291 DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            32 111      01111111222222222344 55666778999999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.60  E-value=2.3e-05  Score=60.19  Aligned_cols=196  Identities=10%  Similarity=0.041  Sum_probs=112.9

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCC-CcceEEEEEecCCCEEEEecC----
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHITGLAYSNTSELLISYND----   81 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~i~~s~~~~~l~s~~d----   81 (285)
                      ..++|++++ ++++++...+.+...+.........            .....+. -...+.+++.++|.+.++...    
T Consensus        74 ~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~------------~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~  140 (314)
T d1pjxa_          74 AGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIA------------KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA  140 (314)
T ss_dssp             EEEEECSSS-SEEEEEETTTEEEEEETTSCEEECC------------SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred             eeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEE------------eccccccccCCCcEEEECCCCCEEEecCccCcc
Confidence            468999976 6666676666788888765432100            0000111 123578999999998776321    


Q ss_pred             ------------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-----EEEEecCCCe
Q 023246           82 ------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-----YVMSGSDCGH  144 (285)
Q Consensus        82 ------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~~~~~dg~  144 (285)
                                  +.|..++...                  ....+...-..  .+.++| ++++.     +.++-+..+.
T Consensus       141 ~~~~~~~~~~~~G~v~~~~~dg------------------~~~~~~~~~~~--pNGi~~-~~d~d~~~~~lyv~d~~~~~  199 (314)
T d1pjxa_         141 PADYTRSMQEKFGSIYCFTTDG------------------QMIQVDTAFQF--PNGIAV-RHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTTS------------------CEEEEEEEESS--EEEEEE-EECTTSCEEEEEEEETTTTE
T ss_pred             cccccceeccCCceEEEEeecC------------------ceeEeeCCcce--eeeeEE-CCCCCcceeEEEEEeecccc
Confidence                        2233333221                  11222211111  456776 66653     4556677899


Q ss_pred             EEEEecCCCceEE------EEec-ccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCC-CCCCCcccceeeccccCC
Q 023246          145 LFIWKKKGGKLVR------LMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGRE  216 (285)
Q Consensus       145 v~vwd~~~~~~~~------~~~~-h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~  216 (285)
                      |+.|++.....+.      .+.. +......+++..+|+..++....+.|..||++++.+. .+.........+.. ..+
T Consensus       200 i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af-g~d  278 (314)
T d1pjxa_         200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF-KPQ  278 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE-CTT
T ss_pred             eEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE-eCC
Confidence            9999876433322      1111 1234567999999998887777889999999877643 23323333333333 333


Q ss_pred             C-ceEEEeCCCCeEEEEEeccc
Q 023246          217 D-HSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       217 ~-~~~~~~s~d~~i~vwd~~~~  237 (285)
                      . .++++.+.++.|...++...
T Consensus       279 ~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         279 TKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SSEEEEEETTTTEEEEEECSSC
T ss_pred             CCEEEEEECCCCcEEEEECCCC
Confidence            3 36677777787777776554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.9e-05  Score=58.86  Aligned_cols=196  Identities=9%  Similarity=0.066  Sum_probs=99.0

Q ss_pred             cceeEEEEcCCCCcEEE-EeeCCCc--EEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            4 IRLNAIVIDPRNPNYFA-VGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~-tg~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      ..+.+-+||||| ..|| +....+.  +.+.+...+.               ...+ ..+........|+|+|+.++. .
T Consensus        39 ~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          39 QPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA---------------VRQV-ASFPRHNGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             SCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC---------------EEEE-ECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeeeEECCCC-CEEEEEEeeccCcceeeeecccCc---------------eeEE-eeeecccccceecCCCCeeeEee
Confidence            346678999997 5555 4444443  4444444432               1111 445677888999999997776 3


Q ss_pred             c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCC--eEEEEecCCCce
Q 023246           80 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCG--HLFIWKKKGGKL  155 (285)
Q Consensus        80 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg--~v~vwd~~~~~~  155 (285)
                      . ++...++......               ............  .....+ ++++..+ ++...++  .|.+.++..+..
T Consensus       102 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1         102 SKTGSLNLYVMDLAS---------------GQIRQVTDGRSN--NTEPTW-FPDSQNLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             CTTSSCEEEEEETTT---------------CCEEECCCCSSC--EEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ecCCccceeeccccc---------------ccceeeeecccc--cccccc-ccccccceecccccCCceEeeeecccccc
Confidence            2 4433333332220               111111122211  223333 5555544 4444444  466666665543


Q ss_pred             EEEEecccccceEeEEcCCCCeEEEEecCC-c--EEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeC---CCCeE
Q 023246          156 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK-T--VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT---PDVIM  229 (285)
Q Consensus       156 ~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~-~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~i  229 (285)
                      . .+..+........|+|+++.++..+.++ .  +.+.+...+....+. ......... ++++++.++-.+   ....|
T Consensus       164 ~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~p~-~SPDG~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         164 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STFLDETPS-LAPNGTMVIYSSSQGMGSVL  240 (269)
T ss_dssp             E-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSSSCEEEE-ECTTSSEEEEEEEETTEEEE
T ss_pred             e-eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cCccccceE-ECCCCCEEEEEEcCCCCcEE
Confidence            3 3344556677789999999977766543 4  444455544432222 222222222 344444443222   22456


Q ss_pred             EEEEeccc
Q 023246          230 HVLRLQRR  237 (285)
Q Consensus       230 ~vwd~~~~  237 (285)
                      +++++..+
T Consensus       241 ~~~~~dg~  248 (269)
T d2hqsa1         241 NLVSTDGR  248 (269)
T ss_dssp             EEEETTSC
T ss_pred             EEEECCCC
Confidence            66666554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.59  E-value=8.9e-06  Score=61.45  Aligned_cols=154  Identities=13%  Similarity=0.174  Sum_probs=101.1

Q ss_pred             eEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe-cCCcEE
Q 023246            7 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY   85 (285)
Q Consensus         7 ~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~-~d~~i~   85 (285)
                      ..+++.+++ .++++....+.+.+++.. ++.         +..+.    ...+......+++.+++.++++. ..+.|+
T Consensus       117 ~~~avd~~G-~i~v~~~~~~~~~~~~~~-g~~---------~~~~g----~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         117 RGVTVDNKG-RIIVVECKVMRVIIFDQN-GNV---------LHKFG----CSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             EEEEECTTS-CEEEEETTTTEEEEECTT-SCE---------EEEEE----CTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             ceeccccCC-cEEEEeeccceeeEeccC-Cce---------eeccc----ccccccccceeeeccceeEEeeecccccee
Confidence            456677654 566655555666666543 221         11110    13345678889999999887775 488999


Q ss_pred             EEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec-CCCeEEEEecCCCceEEEEecc--
Q 023246           86 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD--  162 (285)
Q Consensus        86 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~h--  162 (285)
                      +|+....                 .+..+..........++++ +++++.+++-. .++.|.+|+. +|+.+.++...  
T Consensus       182 ~~d~~G~-----------------~~~~~g~~g~~~~P~giav-D~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~  242 (279)
T d1q7fa_         182 VFNYEGQ-----------------YLRQIGGEGITNYPIGVGI-NSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK  242 (279)
T ss_dssp             EEETTCC-----------------EEEEESCTTTSCSEEEEEE-CTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred             eeecCCc-----------------eeeeecccccccCCccccc-ccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCC
Confidence            9997643                 4444432111122678897 99999877754 3557999985 48887777532  


Q ss_pred             cccceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          163 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       163 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      ......|++.|++.+++ ++.++.|++|.....
T Consensus       243 ~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         243 HAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            24578899999997655 457899999987554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.59  E-value=1.7e-05  Score=60.98  Aligned_cols=232  Identities=7%  Similarity=0.066  Sum_probs=127.4

Q ss_pred             eeEEEEcCCCCcEEEEeeC-------CCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE
Q 023246            6 LNAIVIDPRNPNYFAVGGS-------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS   78 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s   78 (285)
                      ...++|+|++ +++++...       +|+|..||..+++....          ..... .........++|.+++..++.
T Consensus        20 ~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~----------~~~~~-~~~~g~P~Gl~~~~dg~~l~v   87 (314)
T d1pjxa_          20 AEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI----------CKPEV-NGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEE----------ECCEE-TTEECCEEEEEECSSSSEEEE
T ss_pred             CeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEE----------ECCcc-ccCCCcceeEEEeCCCCEEEE
Confidence            4578999986 66655332       46788888877652110          00000 111234678999999986555


Q ss_pred             e-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCc---eeeeeEEEecCCCcEEEEecC-------------
Q 023246           79 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSD-------------  141 (285)
Q Consensus        79 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~-------------  141 (285)
                      + ....|..++....                 ....+......   ...+.+++ +++|++.++-..             
T Consensus        88 ad~~~~i~~~~~~g~-----------------~~~~~~~~~~g~~~~~pndl~~-d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          88 ADMRLGLLVVQTDGT-----------------FEEIAKKDSEGRRMQGCNDCAF-DYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EETTTEEEEEETTSC-----------------EEECCSBCTTSCBCBCCCEEEE-CTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             EECCCeEEEEeCCCc-----------------EEEEEeccccccccCCCcEEEE-CCCCCEEEecCccCcccccccceec
Confidence            4 4566888887654                 11111111111   12567887 899988877422             


Q ss_pred             --CCeEEEEecCCCceEEEEecccccceEeEEcCCCC-----eEEEEecCCcEEEEcCCCC-CC------CCCCCCcccc
Q 023246          142 --CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP-----MFATCGIEKTVKLWAPMPT-DF------PPLPDNAEKI  207 (285)
Q Consensus       142 --dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-----~l~t~~~d~~i~iwd~~~~-~~------~~~~~~~~~~  207 (285)
                        .|.|+.++.. ++..... ..-...+.++|+|++.     ++++-+..+.|..|++... .+      ..+.......
T Consensus       150 ~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         150 EKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG  227 (314)
T ss_dssp             SSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred             cCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc
Confidence              3456666654 4443332 2334557899998764     3455566788888886432 11      1111111100


Q ss_pred             eeeccccCCCceEEEeCCCCeEEEEEecccccceeEee-eccccccCCCCCcCeEEEeecCCC
Q 023246          208 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRER-RYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       208 ~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      ..-.....++.++++....+.|.+||-+.++....+.. ......++.+.+...+|+.+...+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCC
Confidence            01111123455777777788999998776655544432 223344555554446777765544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2.1e-05  Score=58.64  Aligned_cols=168  Identities=13%  Similarity=0.091  Sum_probs=94.7

Q ss_pred             cceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e-cC
Q 023246            4 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND   81 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~-~d   81 (285)
                      .......|+|++..+++....++...++.......              ................+++++..+.. . .+
T Consensus        83 ~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (269)
T d2hqsa1          83 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA  148 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------------CEEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             cccccceecCCCCeeeEeeecCCccceeecccccc--------------cceeeeeccccccccccccccccceeccccc
Confidence            45667889998754444454555555554443321              11111223344456677887764433 3 35


Q ss_pred             Cc--EEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCC---eEEEEecCCCceE
Q 023246           82 EL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKLV  156 (285)
Q Consensus        82 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~~~  156 (285)
                      +.  |.+.+....                 ....+.....  ......+ +|+++.++..+.++   .+.+.+...+.. 
T Consensus       149 g~~~i~~~~~~~~-----------------~~~~~~~~~~--~~~~~~~-spdg~~~~~~~~~~~~~~i~~~~~~~~~~-  207 (269)
T d2hqsa1         149 GRPQVYKVNINGG-----------------APQRITWEGS--QNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV-  207 (269)
T ss_dssp             SSCEEEEEETTSS-----------------CCEECCCSSS--EEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred             CCceEeeeecccc-----------------cceeeecccc--ccccccc-ccccceeEEEeecCCceeeeEeecccccc-
Confidence            54  555555443                 2222222332  2555664 99999887765543   444555554433 


Q ss_pred             EEEecccccceEeEEcCCCCeEEEEecC---CcEEEEcCCCCCCCCCCCCcccc
Q 023246          157 RLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKI  207 (285)
Q Consensus       157 ~~~~~h~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~  207 (285)
                       .+..+........|+|||++|+..+..   ..|.++++.++...++......+
T Consensus       208 -~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~  260 (269)
T d2hqsa1         208 -QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV  260 (269)
T ss_dssp             -EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred             -eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcE
Confidence             333345667788999999997755533   46888999887655554444333

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.35  E-value=0.00024  Score=53.78  Aligned_cols=221  Identities=10%  Similarity=-0.009  Sum_probs=129.9

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF   87 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iw   87 (285)
                      +..|++.++.++.+=-..+.|.-||..+++..             ..    .....+.++++.++|.+++++.+ .+.++
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-------------~~----~~~~~~~~i~~~~dg~l~va~~~-gl~~~   83 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-------------VH----ALPFMGSALAKISDSKQLIASDD-GLFLR   83 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------EE----ECSSCEEEEEEEETTEEEEEETT-EEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-------------EE----ECCCCcEEEEEecCCCEEEEEeC-ccEEe
Confidence            45688765566666556788999998877521             11    11346789999999988887655 58899


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeec---ccCceeeeeEEEecCCCcEEEEecC----CCeEEEEecCCCceEEEEe
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~  160 (285)
                      |..++                 ....+..   ......++.+.+ +++|++.++...    .+.-.+|.+..++......
T Consensus        84 d~~tg-----------------~~~~l~~~~~~~~~~~~nd~~v-d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~  145 (295)
T d2ghsa1          84 DTATG-----------------VLTLHAELESDLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA  145 (295)
T ss_dssp             ETTTC-----------------CEEEEECSSTTCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE
T ss_pred             ecccc-----------------eeeEEeeeecCCCcccceeeEE-CCCCCEEEEeccccccccceeEeeecCCcEEEEee
Confidence            98876                 2223321   111223788887 999998776432    2344566666666544443


Q ss_pred             cccccceEeEEcCCCCeE-EEEecCCcEEEEcCCCCCCCC---------CCCCcccceeeccccCCCceEEEeCCCCeEE
Q 023246          161 GDRHVVNQLEPHPHIPMF-ATCGIEKTVKLWAPMPTDFPP---------LPDNAEKIMKANKQGREDHSRITLTPDVIMH  230 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l-~t~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~  230 (285)
                      . -...+.++|+|+++.+ ++-+..+.|..+++.......         +.+..... .-.....++.+.++.-..+.|.
T Consensus       146 ~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p-dG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         146 D-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             E-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETTTEEE
T ss_pred             c-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccc-cceEEcCCCCEEeeeeCCCceE
Confidence            2 3456789999999874 455567788888874322111         11111111 1111233445666666778888


Q ss_pred             EEEecccccceeEeee-ccccccCCC-CCcCeEEEeecC
Q 023246          231 VLRLQRRQTLAYRERR-YNAADFESD-EEEGETYLLGFS  267 (285)
Q Consensus       231 vwd~~~~~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~  267 (285)
                      .|| ..++.+..+... +....+..+ .+...+|+..-.
T Consensus       224 ~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         224 RYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             Eec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            888 455555555332 223334333 444567776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.25  E-value=0.00023  Score=54.58  Aligned_cols=156  Identities=12%  Similarity=0.151  Sum_probs=94.5

Q ss_pred             ceEEEEEecCCCEEEEe-cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC
Q 023246           63 HITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD  141 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~  141 (285)
                      .+..++|.++|+++++. ..+.|+.|+....                .....+......  ...+++ +++|+++++...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~----------------~~~~~~~~~~~~--p~gla~-~~dG~l~va~~~  101 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK----------------EIKRPFVSHKAN--PAAIKI-HKDGRLFVCYLG  101 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC----------------CEEEEEECSSSS--EEEEEE-CTTSCEEEEECT
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC----------------eEEEEEeCCCCC--eeEEEE-CCCCCEEEEecC
Confidence            45789999999977775 5888998987765                333444333333  788997 999998877533


Q ss_pred             ----CCeEEEEecCCCceEEEEec--ccccceEeEEcCCCCeEEEEec------CCcEEEEcCCCCCCCCCCCCccccee
Q 023246          142 ----CGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDFPPLPDNAEKIMK  209 (285)
Q Consensus       142 ----dg~v~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~  209 (285)
                          .+.+...+............  -...++.+++.|+|++.++...      .+.+..+++....+..+........-
T Consensus       102 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnG  181 (319)
T d2dg1a1         102 DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG  181 (319)
T ss_dssp             TSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEE
T ss_pred             CCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeee
Confidence                34566666665555444332  1234678999999987766432      12355555555443222111111122


Q ss_pred             eccccCCCceEEEeCCCCeEEEEEeccc
Q 023246          210 ANKQGREDHSRITLTPDVIMHVLRLQRR  237 (285)
Q Consensus       210 ~~~~~~~~~~~~~~s~d~~i~vwd~~~~  237 (285)
                      +.+......++++-+..+.|+.|++...
T Consensus       182 ia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eeeccccceEEEecccCCceEEEEEcCC
Confidence            2222223346677788899999998754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.5e-05  Score=61.89  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=51.1

Q ss_pred             cceeEEEEcCCCCcEEEEe---------eCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCC
Q 023246            4 IRLNAIVIDPRNPNYFAVG---------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE   74 (285)
Q Consensus         4 ~~v~~~~~s~~~~~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~   74 (285)
                      ..+....||||+ .+++..         +..+.+.+||+.+++....             .........+....|||+|+
T Consensus        61 ~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l-------------~~~~~~~~~l~~~~wSPDG~  126 (465)
T d1xfda1          61 LRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-------------DPPEVSNAKLQYAGWGPKGQ  126 (465)
T ss_dssp             TTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-------------CCTTCCSCCCSBCCBCSSTT
T ss_pred             cccceeEECCCC-CeEEEEEcccceeEeeccccEEEEEccCCceeec-------------cCccCCccccceeeeccCCc
Confidence            356678899987 555544         3357788999988763211             00122234456688999999


Q ss_pred             EEEEecCCcEEEEEcCCC
Q 023246           75 LLISYNDELVYLFEKNMG   92 (285)
Q Consensus        75 ~l~s~~d~~i~iwd~~~~   92 (285)
                      .+|-..++.|.+.+...+
T Consensus       127 ~iafv~~~nl~~~~~~~~  144 (465)
T d1xfda1         127 QLIFIFENNIYYCAHVGK  144 (465)
T ss_dssp             CEEEEETTEEEEESSSSS
T ss_pred             eEEEEecceEEEEecCCC
Confidence            988888888988887665

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.7e-06  Score=65.93  Aligned_cols=142  Identities=11%  Similarity=0.100  Sum_probs=88.4

Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec--------
Q 023246            9 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--------   80 (285)
Q Consensus         9 ~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~--------   80 (285)
                      ..|.+++ .++. -..+|.|.+||+.+++....+.         ..   .-....+....||||+++++...        
T Consensus        22 ~~W~~~~-~~~~-~~~~g~i~~~~~~~~~~~~l~~---------~~---~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~   87 (465)
T d1xfda1          22 AKWISDT-EFIY-REQKGTVRLWNVETNTSTVLIE---------GK---KIESLRAIRYEISPDREYALFSYNVEPIYQH   87 (465)
T ss_dssp             CCBSSSS-CBCC-CCSSSCEEEBCGGGCCCEEEEC---------TT---TTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred             CEEeCCC-cEEE-EeCCCcEEEEECCCCCEEEEEc---------Cc---cccccccceeEECCCCCeEEEEEcccceeEe
Confidence            4688864 4443 4567899999999876321110         00   11223566788999999766532        


Q ss_pred             --CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecc-cCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEE
Q 023246           81 --DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR  157 (285)
Q Consensus        81 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  157 (285)
                        .+.+.++|+.++                 ....+... .....+....| +|+|+.++-.. ++.|++.+..++..++
T Consensus        88 s~~~~~~i~d~~~~-----------------~~~~l~~~~~~~~~l~~~~w-SPDG~~iafv~-~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1          88 SYTGYYVLSKIPHG-----------------DPQSLDPPEVSNAKLQYAGW-GPKGQQLIFIF-ENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             CCCSEEEEEESSSC-----------------CCEECCCTTCCSCCCSBCCB-CSSTTCEEEEE-TTEEEEESSSSSCCEE
T ss_pred             eccccEEEEEccCC-----------------ceeeccCccCCccccceeee-ccCCceEEEEe-cceEEEEecCCCceEE
Confidence              367889999876                 22222211 11112445664 99999998766 6789999988776654


Q ss_pred             EEec-cccc-----------------ceEeEEcCCCCeEEEEec
Q 023246          158 LMVG-DRHV-----------------VNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       158 ~~~~-h~~~-----------------v~~~~~~p~~~~l~t~~~  183 (285)
                      .... ..+.                 -.++-|||||++||....
T Consensus       149 lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             EecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            4331 1111                 146779999999888753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.12  E-value=0.00057  Score=51.65  Aligned_cols=162  Identities=8%  Similarity=-0.031  Sum_probs=100.7

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec----
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----   80 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~----   80 (285)
                      .+.++++.+++ .++++ +.+ .+.++|..+++.......           ........++.+.+.|+|++.++..    
T Consensus        60 ~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~-----------~~~~~~~~~nd~~vd~~G~iw~~~~~~~~  125 (295)
T d2ghsa1          60 MGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAEL-----------ESDLPGNRSNDGRMHPSGALWIGTMGRKA  125 (295)
T ss_dssp             CEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECS-----------STTCTTEEEEEEEECTTSCEEEEEEETTC
T ss_pred             CcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeee-----------ecCCCcccceeeEECCCCCEEEEeccccc
Confidence            56788888865 55554 444 588899988863211100           0012234688999999999777642    


Q ss_pred             -CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEecCCCeEEEEecCCC-----
Q 023246           81 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSGSDCGHLFIWKKKGG-----  153 (285)
Q Consensus        81 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~dg~v~vwd~~~~-----  153 (285)
                       .+.-.+|.+..+                +....+.... .  .+.+++ +++++.+ ++-+..+.|+.|++...     
T Consensus       126 ~~~~g~l~~~~~g----------------~~~~~~~~~~-~--~Ng~~~-s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~  185 (295)
T d2ghsa1         126 ETGAGSIYHVAKG----------------KVTKLFADIS-I--PNSICF-SPDGTTGYFVDTKVNRLMRVPLDARTGLPT  185 (295)
T ss_dssp             CTTCEEEEEEETT----------------EEEEEEEEES-S--EEEEEE-CTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             cccceeEeeecCC----------------cEEEEeeccC-C--cceeee-cCCCceEEEeecccceeeEeeecccccccc
Confidence             234456665544                2333332222 1  567886 8888755 56677889999986421     


Q ss_pred             -ce--EEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCCCCC
Q 023246          154 -KL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL  200 (285)
Q Consensus       154 -~~--~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~  200 (285)
                       +.  ...+.+..+....+++..+|++.++.-..+.|..||+.+..+..+
T Consensus       186 ~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i  235 (295)
T d2ghsa1         186 GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY  235 (295)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred             cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEe
Confidence             11  122233445678899999999877766678899999876554443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.92  E-value=0.00052  Score=50.93  Aligned_cols=65  Identities=11%  Similarity=0.108  Sum_probs=41.8

Q ss_pred             EEcCC--CCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-ec-C----
Q 023246           10 VIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D----   81 (285)
Q Consensus        10 ~~s~~--~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~~-d----   81 (285)
                      ..+|+  |. .+|-. .+|.|.+.|+.+++.               ..+ ..+.+.+...+|||||+.||- .. +    
T Consensus         5 ~~sPdi~G~-~v~f~-~~~dl~~~d~~~g~~---------------~~L-t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~   66 (281)
T d1k32a2           5 LLNPDIHGD-RIIFV-CCDDLWEHDLKSGST---------------RKI-VSNLGVINNARFFPDGRKIAIRVMRGSSLN   66 (281)
T ss_dssp             CEEEEEETT-EEEEE-ETTEEEEEETTTCCE---------------EEE-ECSSSEEEEEEECTTSSEEEEEEEESTTCC
T ss_pred             ccCCCCCCC-EEEEE-eCCcEEEEECCCCCE---------------EEE-ecCCCcccCEEECCCCCEEEEEEeeCCCCC
Confidence            45787  74 44433 346688889987752               112 345667889999999997775 22 2    


Q ss_pred             -CcEEEEEcCCC
Q 023246           82 -ELVYLFEKNMG   92 (285)
Q Consensus        82 -~~i~iwd~~~~   92 (285)
                       ..|.+++...+
T Consensus        67 ~~~i~~~~~~~g   78 (281)
T d1k32a2          67 TADLYFYNGENG   78 (281)
T ss_dssp             EEEEEEEETTTT
T ss_pred             ceEEEEEEecCC
Confidence             24777777665

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.0059  Score=45.00  Aligned_cols=202  Identities=8%  Similarity=-0.018  Sum_probs=112.9

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEE-E-ecCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI-S-YNDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-s-~~d~   82 (285)
                      .+.+++|++.+..++.+-..++.|+..++.....               ..+.......+.++++..-+..|. + ...+
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~---------------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~  101 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------EEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc---------------EEEEEeccccccEEEEeccCCeEEEeccCCC
Confidence            3567889886644554445667788888765431               111122234678999987665444 4 3478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEec---CCCeEEEEecCCCceEEEE
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKKGGKLVRLM  159 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~  159 (285)
                      .|.+.++...                 ....+..... .....++. +|...+++-..   ....|..-++.........
T Consensus       102 ~I~~~~~dg~-----------------~~~~l~~~~l-~~p~~l~v-dp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~  162 (263)
T d1npea_         102 RIEVAKMDGT-----------------QRRVLFDTGL-VNPRGIVT-DPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA  162 (263)
T ss_dssp             EEEEEETTSC-----------------SCEEEECSSC-SSEEEEEE-ETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE
T ss_pred             EEEEEecCCc-----------------eEEEEecccc-cCCcEEEE-ecccCcEEEeecCCCCcEEEEecCCCCCceeee
Confidence            9999998754                 2233322221 22778886 77666555332   2334555566644333333


Q ss_pred             ecccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCCCCCcccceeeccccCCCceEEEeCCCCeEEEEEecccc
Q 023246          160 VGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ  238 (285)
Q Consensus       160 ~~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~  238 (285)
                      ...-.....+++++.++.|.-+ ...+.|...++.+.....+.........+..  ..+.+.++-...+.|...|...++
T Consensus       163 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTE
T ss_pred             eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEE--ECCEEEEEECCCCEEEEEECCCCc
Confidence            3333567899999887776554 4567888888876543221111111112211  133455555566777777766655


Q ss_pred             ccee
Q 023246          239 TLAY  242 (285)
Q Consensus       239 ~~~~  242 (285)
                      ....
T Consensus       241 ~~~~  244 (263)
T d1npea_         241 EMDT  244 (263)
T ss_dssp             EEEE
T ss_pred             cceE
Confidence            4433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.50  E-value=0.0008  Score=49.86  Aligned_cols=94  Identities=11%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             EEecC--CCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecC----
Q 023246           68 AYSNT--SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----  141 (285)
Q Consensus        68 ~~s~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----  141 (285)
                      ..+|+  |+.++-..++.|.+.|+..+                 ..+.+..+...  .....| +|+|+.|+....    
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g-----------------~~~~Lt~~~~~--~~~p~~-SPDG~~iaf~~~~~~~   64 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSG-----------------STRKIVSNLGV--INNARF-FPDGRKIAIRVMRGSS   64 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTC-----------------CEEEEECSSSE--EEEEEE-CTTSSEEEEEEEESTT
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCC-----------------CEEEEecCCCc--ccCEEE-CCCCCEEEEEEeeCCC
Confidence            45788  98887777778999999876                 44556555543  777885 999999875432    


Q ss_pred             C--CeEEEEecCCCceEEEEe------cccccceEeEEcCCCCeEEEE
Q 023246          142 C--GHLFIWKKKGGKLVRLMV------GDRHVVNQLEPHPHIPMFATC  181 (285)
Q Consensus       142 d--g~v~vwd~~~~~~~~~~~------~h~~~v~~~~~~p~~~~l~t~  181 (285)
                      +  ..|.++++.+++......      .........+|+|+++.++..
T Consensus        65 ~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          65 LNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            2  247888888776543211      122345678899999987754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.16  E-value=0.021  Score=44.17  Aligned_cols=163  Identities=6%  Similarity=0.000  Sum_probs=87.2

Q ss_pred             CccceeEEEEcCCCCcEEEEeeCCC-----------cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEe
Q 023246            2 NSIRLNAIVIDPRNPNYFAVGGSDE-----------YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS   70 (285)
Q Consensus         2 ~~~~v~~~~~s~~~~~~l~tg~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s   70 (285)
                      +..++.......+ +.+++.|+.+.           .+.+||..+++....            ......|.......++.
T Consensus        18 p~~~~~~a~~~~~-gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~~~~~~~~   84 (387)
T d1k3ia3          18 PIVPAAAAIEPTS-GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMFCPGISMD   84 (387)
T ss_dssp             SSCCSEEEEETTT-TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCSSCEEEEC
T ss_pred             CccccEEEEEeeC-CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------------CCCCCCcccceeEEEEe
Confidence            3445544444444 47888877531           267899998864211            00101222233456788


Q ss_pred             cCCCEEEEec--CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC------
Q 023246           71 NTSELLISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC------  142 (285)
Q Consensus        71 ~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------  142 (285)
                      +++++++.|.  ...+.+||..+.                 ....+..-.....-...+. .++++.++.|+.+      
T Consensus        85 ~~g~i~v~Gg~~~~~~~~yd~~~~-----------------~w~~~~~~~~~r~~~~~~~-~~dG~v~v~GG~~~~~~~~  146 (387)
T d1k3ia3          85 GNGQIVVTGGNDAKKTSLYDSSSD-----------------SWIPGPDMQVARGYQSSAT-MSDGRVFTIGGSWSGGVFE  146 (387)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGT-----------------EEEECCCCSSCCSSCEEEE-CTTSCEEEECCCCCSSSCC
T ss_pred             cCCcEEEeecCCCcceeEecCccC-----------------cccccccccccccccceee-ecCCceeeecccccccccc
Confidence            9999888863  568999998765                 1111111111111223443 5788888887752      


Q ss_pred             CeEEEEecCCCceEEEEec---------cccc-----ceEeEEcCCCCeEEEEecCCcEEEEcCCCC
Q 023246          143 GHLFIWKKKGGKLVRLMVG---------DRHV-----VNQLEPHPHIPMFATCGIEKTVKLWAPMPT  195 (285)
Q Consensus       143 g~v~vwd~~~~~~~~~~~~---------h~~~-----v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~  195 (285)
                      ..+.+||..+.+-...-..         +...     -..+..-++++.++.++.+..+.+++....
T Consensus       147 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         147 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            3688999886653221110         0000     001122345566666666666666666554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.032  Score=40.88  Aligned_cols=189  Identities=11%  Similarity=-0.018  Sum_probs=102.4

Q ss_pred             CCcceEEEEEecCCCEEEEe--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCc-EE
Q 023246           60 NNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YV  136 (285)
Q Consensus        60 h~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l  136 (285)
                      +...+.+++|.+..+.+.-+  ..+.|+..++...                .....+......  +.++++ +.-+. +.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~----------------~~~~v~~~~~~~--p~~iAv-D~~~~~lY   94 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG----------------EPTTIIRQDLGS--PEGIAL-DHLGRTIF   94 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC----------------CCEEEECTTCCC--EEEEEE-ETTTTEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC----------------CcEEEEEecccc--ccEEEE-eccCCeEE
Confidence            34457789999877655443  4788988888765                232233222222  778887 65444 44


Q ss_pred             EEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe-cCCc--EEEEcCCCCCCCCCC-CCcccceeecc
Q 023246          137 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKT--VKLWAPMPTDFPPLP-DNAEKIMKANK  212 (285)
Q Consensus       137 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~-~d~~--i~iwd~~~~~~~~~~-~~~~~~~~~~~  212 (285)
                      .+-...+.|.+.++........+......+..++++|...++.... ..+.  |.--++.+.....+. ........+..
T Consensus        95 ~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glai  174 (263)
T d1npea_          95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (263)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEE
Confidence            5666678999999885554333333346788999999777755433 2223  433455554332221 11111122222


Q ss_pred             ccCCCceEEEeCCCCeEEEEEecccccceeEeeeccccccCCCCCcCeEEEeecCCC
Q 023246          213 QGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDS  269 (285)
Q Consensus       213 ~~~~~~~~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (285)
                      .....++.++-...+.|...++........+...+....++..  ++.+|..+...+
T Consensus       175 D~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~  229 (263)
T d1npea_         175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTN  229 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTT
T ss_pred             eecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCC
Confidence            2223445566566788888887665433332211112233333  345776665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.49  E-value=0.031  Score=43.59  Aligned_cols=29  Identities=10%  Similarity=0.061  Sum_probs=23.5

Q ss_pred             cceEeEEcCCCCeEEEE-ecCCcEEEEcCC
Q 023246          165 VVNQLEPHPHIPMFATC-GIEKTVKLWAPM  193 (285)
Q Consensus       165 ~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~  193 (285)
                      ....+..+|||++++.+ ..+.++.++|++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            45678999999995554 578999999985

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.47  E-value=0.13  Score=40.10  Aligned_cols=148  Identities=8%  Similarity=0.041  Sum_probs=90.8

Q ss_pred             cEEEEeeCCCcEEEEEccCCcccCCcCCCC--Cccccccc----------------c---------cCCCCCcceEEEEE
Q 023246           17 NYFAVGGSDEYARVYDIRKCHWYSPISSDT--PVDTFCPR----------------H---------LIGKNNIHITGLAY   69 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~----------------~---------~~~~h~~~v~~i~~   69 (285)
                      ..|.+|+..|.|+|+-+.+++.+..+....  +...+-..                .         ...+-... ..+.+
T Consensus        14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH-P~~S~   92 (459)
T d1fwxa2          14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH-VHMSF   92 (459)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC-EEEEE
T ss_pred             EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC-Ccccc
Confidence            357889999999999999998765544211  11111000                0         00111111 15556


Q ss_pred             ec---CCCEEEEe--cCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEE-ecCCCcEEEEecCC-
Q 023246           70 SN---TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSDC-  142 (285)
Q Consensus        70 s~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~d-  142 (285)
                      ..   ||++|...  .+..|.+.|+...                +..+.... .+...+..+.. -.|+-.|++.++++ 
T Consensus        93 TdGtyDGrylFVNDkan~RVAvIdl~~f----------------kt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~  155 (459)
T d1fwxa2          93 TEGKYDGRFLFMNDKANTRVARVRCDVM----------------KCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDE  155 (459)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTT----------------EEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSC
T ss_pred             cCCccceeEEEEEcCCCceEEEEECcce----------------eeeEEEec-CCCCCCceeecccCCCeEEEEccCccc
Confidence            54   78887775  3899999999876                44443332 22223555543 13566677776653 


Q ss_pred             -----------------CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEec
Q 023246          143 -----------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI  183 (285)
Q Consensus       143 -----------------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~  183 (285)
                                       +.+.++|..+.+....+.. .+....++++|+|+++++.+.
T Consensus       156 vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         156 TPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEES
T ss_pred             cccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEec
Confidence                             2367889988888777664 345778999999999776653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.092  Score=38.35  Aligned_cols=204  Identities=7%  Similarity=-0.018  Sum_probs=106.6

Q ss_pred             ceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEE-EE-ecCC
Q 023246            5 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-IS-YNDE   82 (285)
Q Consensus         5 ~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~s-~~d~   82 (285)
                      .+.+++|++.+..++.+=...+.|.-.++......      .     ....+.......+..+++.+.+..| .+ ...+
T Consensus        31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~------~-----~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~   99 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------S-----SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG   99 (266)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC------c-----ceEEEEeCCCCCcceEEEeeccceEEEEecCCC
Confidence            35578888765333333334555655555422100      0     1111112223456688998766544 34 3478


Q ss_pred             cEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEE-EEe-cCCCeEEEEecCCCceEEEEe
Q 023246           83 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV-MSG-SDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        83 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~-~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      .|.+.++...                .....+......  ...++. +|...++ .+- +..+.|...++..........
T Consensus       100 ~I~v~~~~g~----------------~~~~~~~~~~~~--P~~l~v-d~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1         100 TVSVADTKGV----------------KRKTLFRENGSK--PRAIVV-DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEEETTSS----------------SEEEEEECTTCC--EEEEEE-ETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEeEecCCc----------------eEEEEEcCCCCC--cceEEE-EcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            8999998765                233333333332  678886 6654444 442 345577777776443333333


Q ss_pred             cccccceEeEEcCCCCeEEEE-ecCCcEEEEcCCCCCCCCC---CCCcccceeeccccCCCceEEEeCCCCeEEEEEecc
Q 023246          161 GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDFPPL---PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR  236 (285)
Q Consensus       161 ~h~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~  236 (285)
                      ..-.....+++++.+..|.-+ ...+.|...++.+.....+   .........+..  ..+.++++-..++.|+..+..+
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEE--ECCEEEEEECCCCeEEEEECCC
Confidence            333567899999987776555 4567888888876543221   111111122211  1233445545566666666555


Q ss_pred             cccc
Q 023246          237 RQTL  240 (285)
Q Consensus       237 ~~~~  240 (285)
                      ++..
T Consensus       239 g~~~  242 (266)
T d1ijqa1         239 GSDV  242 (266)
T ss_dssp             CCCC
T ss_pred             Ccce
Confidence            5443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.12  Score=38.27  Aligned_cols=221  Identities=9%  Similarity=0.127  Sum_probs=122.2

Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEE
Q 023246            8 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF   87 (285)
Q Consensus         8 ~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iw   87 (285)
                      +.-.+|. ...||.-+ ..+++|+|+++.+.++....                ..+|.--.|-.+ +.|+--.+..|+-|
T Consensus        67 sAIMhP~-~~IiALra-g~~LQiFnletK~klks~~~----------------~e~VvfWkWis~-~~L~lVT~taVYHW  127 (327)
T d1utca2          67 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM----------------TDDVTFWKWISL-NTVALVTDNAVYHW  127 (327)
T ss_dssp             EEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC----------------SSCCCEEEESSS-SEEEEECSSEEEEE
T ss_pred             hhhcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEc----------------CCCcEEEEecCC-CEEEEEcCCceEEE
Confidence            3456885 47777766 56899999998874432222                224444456443 45555667789999


Q ss_pred             EcCCCCCCCCCCCCCccccCCCCceEeecccCc--eeeeeEEEecCCCcEEEEec-------CCCeEEEEecCCCceEEE
Q 023246           88 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGS-------DCGHLFIWKKKGGKLVRL  158 (285)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~-------~dg~v~vwd~~~~~~~~~  158 (285)
                      ++....               .+.+.|..|..-  ..|-.-.. +++.++++..+       -.|.+.+|..+ .+.-..
T Consensus       128 ~~~g~s---------------~P~k~fdR~~~L~~~QIInY~~-d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~  190 (327)
T d1utca2         128 SMEGES---------------QPVKMFDRHSSLAGCQIINYRT-DAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQP  190 (327)
T ss_dssp             ESSSSC---------------CCEEEEECCGGGTTCEEEEEEE-CTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEE
T ss_pred             cccCCC---------------CchhhhhhcccccCceEEEEEE-CCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCcc
Confidence            996542               345555554431  12555554 77777765432       24678899887 455666


Q ss_pred             EecccccceEeEEcCCC---CeEEEEe---cCCcEEEEcCCCCC--CCCCCCCccc-----------ceeeccccCCCce
Q 023246          159 MVGDRHVVNQLEPHPHI---PMFATCG---IEKTVKLWAPMPTD--FPPLPDNAEK-----------IMKANKQGREDHS  219 (285)
Q Consensus       159 ~~~h~~~v~~~~~~p~~---~~l~t~~---~d~~i~iwd~~~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~  219 (285)
                      +.+|.+.-..+...-+.   ..|+.+.   ..+.+++.++....  ...+......           .+... .+..-+.
T Consensus       191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamq-vs~kygi  269 (327)
T d1utca2         191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDV  269 (327)
T ss_dssp             ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEE-EETTTTE
T ss_pred             ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEE-eeccCCE
Confidence            77776554444332111   1233332   12578888875422  1111110000           00110 1112336


Q ss_pred             EEEeCCCCeEEEEEecccccceeEeeeccccccC-CCCCcCeEEEee
Q 023246          220 RITLTPDVIMHVLRLQRRQTLAYRERRYNAADFE-SDEEEGETYLLG  265 (285)
Q Consensus       220 ~~~~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~  265 (285)
                      +...+.-|.++++|+.++..+..-..+.+.--+. .++..+.++.++
T Consensus       270 iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VN  316 (327)
T d1utca2         270 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN  316 (327)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEEC
Confidence            6778888999999999998776655554432222 223334455554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.20  E-value=0.14  Score=37.79  Aligned_cols=162  Identities=8%  Similarity=0.093  Sum_probs=92.4

Q ss_pred             ccceeEEEEcCCCCcEEEEee------CCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC---
Q 023246            3 SIRLNAIVIDPRNPNYFAVGG------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---   73 (285)
Q Consensus         3 ~~~v~~~~~s~~~~~~l~tg~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---   73 (285)
                      +..|..-..+++..-++++|=      -.|.+.+|..+.+.                ...+.+|......+.+..+.   
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~----------------sQ~ieGhaa~F~~~~~~g~~~~~  210 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----------------SQPIEGHAASFAQFKMEGNAEES  210 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE----------------EEEECCSEEEEEEECCTTCSSCE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc----------------CccccceeeeeEEEEcCCCCCCc
Confidence            345556666776533344431      23678888887543                22226666655555443322   


Q ss_pred             CEEEEe---c-CCcEEEEEcCCCCCCCCCCCCCccccCCCCceE-eecccCceeeeeEEEecCCCcEEEEecCCCeEEEE
Q 023246           74 ELLISY---N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW  148 (285)
Q Consensus        74 ~~l~s~---~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vw  148 (285)
                      .+++-+   . .++++|.++.......+ .+.      .+.... +.........-++.. ++.-..+..-+.-|.+++|
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~-~f~------kk~vdi~fppea~~DFPvamqv-s~kygiiyviTK~G~i~ly  282 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQ-PFP------KKAVDVFFPPEAQNDFPVAMQI-SEKHDVVFLITKYGYIHLY  282 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCC-CCC------CEEEECCCCTTCTTCCEEEEEE-ETTTTEEEEEETTSEEEEE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCC-CCc------ceeEEEECCccccCCcEEEEEe-eccCCEEEEEecCcEEEEE
Confidence            133223   2 47899999876421110 000      001111 111111122455665 7777788888999999999


Q ss_pred             ecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEE
Q 023246          149 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK  188 (285)
Q Consensus       149 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~  188 (285)
                      |++++.++..-+--...|..-+-+....-++....+|.|.
T Consensus       283 DleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         283 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            9999999987665566676555555555677777777664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.86  E-value=0.21  Score=37.84  Aligned_cols=71  Identities=7%  Similarity=0.109  Sum_probs=44.1

Q ss_pred             eeeEEEecCCCcEEEEecC---------------CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEE-ecCCc
Q 023246          123 VKGVNFFGPNDEYVMSGSD---------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKT  186 (285)
Q Consensus       123 i~~~~~~~~~~~~l~~~~~---------------dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~-~~d~~  186 (285)
                      .+++.. ..++.+++|-..               -+...+|....++. ......-...+.++++|++++|+.+ ...+.
T Consensus       152 pNDv~~-~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         152 VNDIVA-VGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             EEEEEE-EETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             ccceEE-ecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCe
Confidence            678886 677888887311               12233443333333 2222234578899999999885544 56788


Q ss_pred             EEEEcCCCC
Q 023246          187 VKLWAPMPT  195 (285)
Q Consensus       187 i~iwd~~~~  195 (285)
                      |+.|++...
T Consensus       230 i~~y~~~~~  238 (340)
T d1v04a_         230 IHVYEKHAN  238 (340)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEeCCC
Confidence            999988654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.69  Score=33.42  Aligned_cols=183  Identities=10%  Similarity=-0.009  Sum_probs=99.8

Q ss_pred             CcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEe--cCCcEEEEEcCCCCCCCCCCCCCc
Q 023246           26 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPE  103 (285)
Q Consensus        26 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~  103 (285)
                      ..|+-.++.+.+..               .+ ......+.++.|.+..+.|.-.  ..+.|.-.++......        
T Consensus        10 ~~I~~~~l~~~~~~---------------~~-~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~--------   65 (266)
T d1ijqa1          10 HEVRKMTLDRSEYT---------------SL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------   65 (266)
T ss_dssp             SSEEEEETTSCCCE---------------EE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------
T ss_pred             CeEEEEECCCCcce---------------ee-eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC--------
Confidence            45888888765421               11 1233467789999877755443  4677776666532100        


Q ss_pred             cccCCCCceEeecccCceeeeeEEEecCCCc-EEEEecCCCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEe
Q 023246          104 DLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                           .....+.... ...+.++++ ++.++ ...+-...+.|.+.++........+.........++++|...++.-..
T Consensus        66 -----~~~~~~~~~~-~~~p~glAv-D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~  138 (266)
T d1ijqa1          66 -----SSYDTVISRD-IQAPDGLAV-DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD  138 (266)
T ss_dssp             -------CEEEECSS-CSCCCEEEE-ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred             -----cceEEEEeCC-CCCcceEEE-eeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEec
Confidence                 1122222221 122667887 65444 445556678999999986655555555556788999998665544332


Q ss_pred             --cCCcEEEEcCCCCCCCCCCC-CcccceeeccccCCCceEEEeCCCCeEEEEEeccccc
Q 023246          183 --IEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT  239 (285)
Q Consensus       183 --~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~d~~i~vwd~~~~~~  239 (285)
                        ..+.|.-.++.+.....+.. .......+.......++..+-...+.|...++.....
T Consensus       139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence              34456666666554322211 1111222222223445666667778888888765543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.37  E-value=1.5  Score=35.50  Aligned_cols=51  Identities=10%  Similarity=0.171  Sum_probs=34.5

Q ss_pred             CCcEEEEecCCCeEEEEecCCCceEEEEeccccc-ceEeEEcCCCCe-EEEEe
Q 023246          132 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEPHPHIPM-FATCG  182 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~-l~t~~  182 (285)
                      .+.+++.|+.||.++.+|.++|+.+.++...... -.-+.+..+|+. ++...
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            4667888999999999999999999888743211 112444456753 44433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.28  E-value=0.82  Score=37.25  Aligned_cols=54  Identities=9%  Similarity=0.004  Sum_probs=39.6

Q ss_pred             CeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          143 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       143 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      |.+.-||+.+++.+...+... +...=...-.+.++++++.|+.++.+|.++++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcE
Confidence            578899999999998776432 222212233567888899999999999998874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.17  E-value=1.3  Score=33.81  Aligned_cols=151  Identities=10%  Similarity=-0.005  Sum_probs=87.2

Q ss_pred             CCccceeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEec
Q 023246            1 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN   80 (285)
Q Consensus         1 ~~~~~v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~   80 (285)
                      ++....+-+++++.. -+++.|+.++ ++|-.+..-+...  +....-..+.....    -..|..++|+.+  .|+...
T Consensus        34 lP~~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~--~~~~~~~~~~~~~~----ip~v~~vafs~d--~l~v~~  103 (381)
T d1xipa_          34 LPFASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHI--TSDSTPLTFKWEKE----IPDVIFVCFHGD--QVLVST  103 (381)
T ss_dssp             CCSSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHH--HSSSCCCCCSEEEE----CTTEEEEEEETT--EEEEEE
T ss_pred             CCccccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHh--hccCCCCcceeccC----CCCeEEEEeeCC--EEEEEe
Confidence            355677788998864 5777777764 6677654221000  00000001111111    125888999755  566666


Q ss_pred             CCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCCCeEEEEecCCCceEEEEe
Q 023246           81 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        81 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++.+..++....                ..........  .++.++.. .|.  .++....++.+.++++..++......
T Consensus       104 ~~~l~~~~~~~l----------------~~~~~~~~~~--~~~~~~~~-~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_         104 RNALYSLDLEEL----------------SEFRTVTSFE--KPVFQLKN-VNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             SSEEEEEESSST----------------TCEEEEEECS--SCEEEEEE-CSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEeecc----------------cccccccccc--ccccceec-CCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            777888887653                1222222222  23777774 554  45556668999999998876433221


Q ss_pred             -----cccccceEeEEcCCCCeEEEEe
Q 023246          161 -----GDRHVVNQLEPHPHIPMFATCG  182 (285)
Q Consensus       161 -----~h~~~v~~~~~~p~~~~l~t~~  182 (285)
                           .-.+.+.+++|++.+..++++.
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeC
Confidence                 1135688889998888887764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.48  E-value=1.8  Score=33.57  Aligned_cols=101  Identities=11%  Similarity=0.163  Sum_probs=55.7

Q ss_pred             eeEEEEcCCCCcEEE-EeeCCC----cEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEE-e
Q 023246            6 LNAIVIDPRNPNYFA-VGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y   79 (285)
Q Consensus         6 v~~~~~s~~~~~~l~-tg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s-~   79 (285)
                      +..+++||++ +++| +-+.+|    .++++|+.+++.+.             ..+ .  ......++|+++++.|+- .
T Consensus       127 ~~~~~~Spd~-~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-------------~~i-~--~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         127 LRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELP-------------DVL-E--RVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEE-------------EEE-E--EECSCCEEECTTSSEEEEEE
T ss_pred             ecceEecCCC-CEEEEEeccccCchheeEEeccCcceecc-------------ccc-c--cccccceEEcCCCCEEEEEE
Confidence            3457889987 5555 444444    59999999987321             011 0  011246889999985543 2


Q ss_pred             cC----------------CcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEE
Q 023246           80 ND----------------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS  138 (285)
Q Consensus        80 ~d----------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  138 (285)
                      .+                ..|..+.+.+..              ......+........+..+.. +.++++++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~--------------~~d~~v~~e~d~~~~~~~~~~-s~d~~~l~i  249 (430)
T d1qfma1         190 YPQQDGKSDGTETSTNLHQKLYYHVLGTDQ--------------SEDILCAEFPDEPKWMGGAEL-SDDGRYVLL  249 (430)
T ss_dssp             CCCCSSCCSSSCCCCCCCCEEEEEETTSCG--------------GGCEEEECCTTCTTCEEEEEE-CTTSCEEEE
T ss_pred             eccccCcccccccccCCcceEEEEECCCCc--------------cccccccccccCCceEEeeec-cCCcceeeE
Confidence            11                247777776541              012233333332222455554 888888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.54  E-value=2.4  Score=33.12  Aligned_cols=59  Identities=8%  Similarity=0.044  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcEEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecC
Q 023246            6 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT   72 (285)
Q Consensus         6 v~~~~~s~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~   72 (285)
                      -++|+|.|++ ++|++--..|.|++++..+++.........      .... ..-......|+|+|+
T Consensus        29 P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~------~~~~-~~ge~GLLgia~~Pd   87 (450)
T d1crua_          29 PHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPE------IVND-ADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTT------CCCC-TTSSCSEEEEEECTT
T ss_pred             ceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCc------cccc-cCCCCceeeEEeCCC
Confidence            4689999986 777776557999999887765321111100      0000 122356789999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.45  E-value=2.4  Score=32.83  Aligned_cols=102  Identities=8%  Similarity=0.038  Sum_probs=61.3

Q ss_pred             CCCCcceEEEEEecCCCEEEEe-c-C----CcEEEEEcCCCCCCCCCCCCCccccCCCCce-EeecccCceeeeeEEEec
Q 023246           58 GKNNIHITGLAYSNTSELLISY-N-D----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFG  130 (285)
Q Consensus        58 ~~h~~~v~~i~~s~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~  130 (285)
                      .++.-.+...++||++++++-+ + +    ..|+++|+.++                +.+. .+....    ...+.| .
T Consensus       121 ~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg----------------~~~~~~i~~~~----~~~~~W-~  179 (430)
T d1qfma1         121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA----------------KELPDVLERVK----FSCMAW-T  179 (430)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT----------------EEEEEEEEEEC----SCCEEE-C
T ss_pred             ccccceecceEecCCCCEEEEEeccccCchheeEEeccCcc----------------eeccccccccc----ccceEE-c
Confidence            4555556678899999977753 2 2    45999999987                3322 221111    245775 8


Q ss_pred             CCCcEEEEecC----------------CCeEEEEecCCCce--EEEEeccc--ccceEeEEcCCCCeEEE
Q 023246          131 PNDEYVMSGSD----------------CGHLFIWKKKGGKL--VRLMVGDR--HVVNQLEPHPHIPMFAT  180 (285)
Q Consensus       131 ~~~~~l~~~~~----------------dg~v~vwd~~~~~~--~~~~~~h~--~~v~~~~~~p~~~~l~t  180 (285)
                      ++++.|+....                ...|+.+.+.+...  ...+....  ..+..+..++++++++.
T Consensus       180 ~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         180 HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            88887754322                22577777766532  33333322  34556778899998653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.72  E-value=2.2  Score=34.60  Aligned_cols=50  Identities=12%  Similarity=-0.033  Sum_probs=34.8

Q ss_pred             CCcEEEEecCCCeEEEEecCCCceEEEEeccc-ccceEeEEcCCCCe-EEEE
Q 023246          132 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPM-FATC  181 (285)
Q Consensus       132 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~-l~t~  181 (285)
                      .+.++++|+.||.++.+|.++|+.+.++.-.. ..-.-+.+..+|+. ++..
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence            46678889999999999999999998886322 11222455557764 4443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.60  E-value=2.6  Score=31.69  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=47.1

Q ss_pred             eEEEecCCCcEEEEecCC-CeEEEEecCCCceEEEEecc-cccceEeEEcCCCCeEEEEecC------CcEEEEcCCCCC
Q 023246          125 GVNFFGPNDEYVMSGSDC-GHLFIWKKKGGKLVRLMVGD-RHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMPTD  196 (285)
Q Consensus       125 ~~~~~~~~~~~l~~~~~d-g~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~~~  196 (285)
                      ...+ .+++++++.|+.+ ..+.+||..+..-...-... ...-..++..++++.++.++.+      ..+.+||+.+..
T Consensus        80 ~~~~-~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISM-DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEE-CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEE-ecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            4454 7899999988755 68999998876543211111 1122456677899998888743      368899987654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.72  E-value=3.5  Score=29.46  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=49.0

Q ss_pred             ceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCCCCCCCccccCCCCceEeecccCceeeeeEEEecCCCcEEEEecCC
Q 023246           63 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC  142 (285)
Q Consensus        63 ~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d  142 (285)
                      .|..|+-- ..+.++. .||.|..|-.....                .+-.-....  ..+..+.. . +...++.  .|
T Consensus        27 ~i~~va~G-~~h~~al-~dG~v~~wG~N~~G----------------QlG~~~~~~--~~v~~v~~-G-~~~~~al--~d   82 (273)
T d1jtdb_          27 GVDAIAGG-YFHGLAL-KGGKVLGWGANLNG----------------QLTMPAATQ--SGVDAIAA-G-NYHSLAL--KD   82 (273)
T ss_dssp             SEEEEEEC-SSEEEEE-ETTEEEEEECCTTS----------------TTSCCGGGG--SCCCEEEE-C-SSEEEEE--ET
T ss_pred             CcEEEEcc-CCEEEEE-ECCEEEEEeCCCCC----------------ceeeeeccc--ccceEEec-C-CCceeee--ee
Confidence            56776552 2233443 48999999876541                111111111  12666654 2 2223332  47


Q ss_pred             CeEEEEecCC-CceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCC
Q 023246          143 GHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP  194 (285)
Q Consensus       143 g~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~  194 (285)
                      +.++.|.... ++.. ........+..++....  ..+ .-.|+.+..|....
T Consensus        83 g~v~~wG~~~~gq~~-~~~~~~~~~~~i~~~~~--~~~-~~~dg~v~~~g~~~  131 (273)
T d1jtdb_          83 GEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASY-ALKDGKVIAWGDDS  131 (273)
T ss_dssp             TEEEEEECCTTSTTC-CCGGGGSSCCEEEEETT--EEE-EEETTEEEEEECCT
T ss_pred             eeeeccCCCcceeec-cccccccceeEEeeecc--ccc-ccccccceecccCC
Confidence            9999997543 2211 11111223444443322  222 22478888887543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.49  E-value=7.8  Score=31.19  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCC
Q 023246           18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSP   97 (285)
Q Consensus        18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~   97 (285)
                      .++.++.++.|.-+|..+|+.+...+...+......... ....   ..+... +++.++...|+.+.-.|..++     
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~-~~~~---~g~~~~-~~~v~~~t~~g~l~alda~tG-----  148 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC-DVVN---RGVALW-KGKVYVGAWDGRLIALDAATG-----  148 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS-CSCC---CCCEEE-TTEEEEECTTSEEEEEETTTC-----
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCccccccccc-cccc---ccceEE-CCcEEEEecccceeeeccccc-----
Confidence            667778889999999999986654433222211100000 0000   112221 334455556777777777776     


Q ss_pred             CCCCCccccCCCCceEeecccCce---eee--eEEEecCCCcEEEEec------CCCeEEEEecCCCceEEEEe
Q 023246           98 LSLSPEDLQKREEPQVYSGHRNSQ---TVK--GVNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~---~i~--~~~~~~~~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~  160 (285)
                                 +.+-.........   .+.  -+.+    +..++.++      ..|.|+-+|.++|+.+..+.
T Consensus       149 -----------~~~W~~~~~~~~~~~~~~~~~p~v~----~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         149 -----------KEVWHQNTFEGQKGSLTITGAPRVF----KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             -----------CEEEEEETTTTCCSSCBCCSCCEEE----TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             -----------cceecccCccCCcceEEeecceEEE----eccEEEeeccccccccceEEEEecCCccceeeee
Confidence                       3333222211110   001  1111    23344433      25789999999999998764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=4.9  Score=28.50  Aligned_cols=21  Identities=24%  Similarity=0.621  Sum_probs=13.9

Q ss_pred             EEEEeeCC----CcEEEEEccCCcc
Q 023246           18 YFAVGGSD----EYARVYDIRKCHW   38 (285)
Q Consensus        18 ~l~tg~~d----g~v~iwd~~~~~~   38 (285)
                      +.+.|+.+    ..+.+||+.+++.
T Consensus         7 iyv~GG~~~~~~~~~~~yd~~t~~W   31 (288)
T d1zgka1           7 IYTAGGYFRQSLSYLEAYNPSNGTW   31 (288)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEE
T ss_pred             EEEECCcCCCCCceEEEEECCCCeE
Confidence            44555544    3577999998764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.69  E-value=8.5  Score=30.96  Aligned_cols=121  Identities=13%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             EEEEee-CCCcEEEEEcc-CCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCC
Q 023246           18 YFAVGG-SDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGP   95 (285)
Q Consensus        18 ~l~tg~-~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~   95 (285)
                      .++.++ .++.|...|.. +|+.+...+...+.........    ...-+.+++. ++++++...|+.+.-.|.+++   
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~----~~~~rg~a~~-~~~i~~~~~~g~l~alda~tG---  135 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCC----DVVDRGLAYG-AGQIVKKQANGHLLALDAKTG---  135 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTT----CSCCCCCEEE-TTEEEEECTTSEEEEEETTTC---
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCccccccccc----CcCCCcceee-CCeEEEEeCCCcEEeeehhhh---
Confidence            444444 46888888874 6876554433322221110000    0001123332 445666667888888898887   


Q ss_pred             CCCCCCCccccCCCCceEeeccc--CceeeeeEEEecCCCcEEEEec-----CCCeEEEEecCCCceEEEEe
Q 023246           96 SPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGS-----DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~-----~dg~v~vwd~~~~~~~~~~~  160 (285)
                                   +....+....  ....++.--. -.++..++..+     ..|.|+-+|+++|+.+..+.
T Consensus       136 -------------~~~w~~~~~~~~~~~~~t~~p~-v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         136 -------------KINWEVEVCDPKVGSTLTQAPF-VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             -------------CEEEEEECCCGGGTCBCCSCCE-EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             -------------hhhccccccccccccceeecCe-EeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence                         3433332111  0001111100 11343433332     37889999999999998765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.57  E-value=8.7  Score=30.97  Aligned_cols=55  Identities=13%  Similarity=-0.087  Sum_probs=41.6

Q ss_pred             CCeEEEEecCCCceEEEEecccccceEeEEcCCCCeEEEEecCCcEEEEcCCCCCC
Q 023246          142 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF  197 (285)
Q Consensus       142 dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~  197 (285)
                      .|.|.-+|+.+++.+.+...+. ++..-..+..+..++.++.||.++.+|.+++++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence            4789999999999998876443 333222344567777899999999999999874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.06  E-value=2.3  Score=34.49  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=35.5

Q ss_pred             CCCcEEEEecCCCeEEEEecCCCceEEEEeccccc-ceEeEEcCCCCe-EEE
Q 023246          131 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEPHPHIPM-FAT  180 (285)
Q Consensus       131 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~-l~t  180 (285)
                      ..+.++++|+.||.++.+|.++|+.+.++...... -.-+.+..+|+. ++.
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            45668888999999999999999999888742211 122556667764 443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=6  Score=28.01  Aligned_cols=11  Identities=9%  Similarity=0.268  Sum_probs=8.2

Q ss_pred             CcEEEEEcCCC
Q 023246           82 ELVYLFEKNMG   92 (285)
Q Consensus        82 ~~i~iwd~~~~   92 (285)
                      ..+.+||+.+.
T Consensus        19 ~~~~~yd~~t~   29 (288)
T d1zgka1          19 SYLEAYNPSNG   29 (288)
T ss_dssp             CCEEEEETTTT
T ss_pred             ceEEEEECCCC
Confidence            45789998775

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.86  E-value=11  Score=30.37  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             cEEEEeeCCCcEEEEEc-cCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCC----CEEEE-ecCCcEEEEEcC
Q 023246           17 NYFAVGGSDEYARVYDI-RKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS----ELLIS-YNDELVYLFEKN   90 (285)
Q Consensus        17 ~~l~tg~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~----~~l~s-~~d~~i~iwd~~   90 (285)
                      .++++++.++.+...|. .+|+.+............ .  . ......-+.+++.++.    .+++. ..|+.|.-.|..
T Consensus        64 ~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~-~--~-~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~  139 (596)
T d1w6sa_          64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAAR-A--V-ACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (596)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGG-G--G-CSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             EEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccc-c--c-cccccccceeEEecCCCCCceEEEEEeCCCCeEeeccc
Confidence            34445555677777886 477765443322211100 0  0 0001111234444332    24444 458999999998


Q ss_pred             CCCCCCCCCCCCccccCCCCceEeecccCc--eeeee-EEEecCCCcEEEEecC------CCeEEEEecCCCceEEEEe
Q 023246           91 MGLGPSPLSLSPEDLQKREEPQVYSGHRNS--QTVKG-VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~-~~~~~~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~  160 (285)
                      ++                +.+..+......  ..++. -.+   .+..++.+..      .|.|+-+|+++|+.+.++.
T Consensus       140 tG----------------~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         140 TG----------------ETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             TC----------------CEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             cC----------------ceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            88                555555321110  01111 111   1334444432      5899999999999998765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=81.83  E-value=11  Score=30.16  Aligned_cols=120  Identities=12%  Similarity=0.034  Sum_probs=59.6

Q ss_pred             EEEEeeCCCcEEEEEccCCcccCCcCCCCCcccccccccCCCCCcceEEEEEecCCCEEEEecCCcEEEEEcCCCCCCCC
Q 023246           18 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSP   97 (285)
Q Consensus        18 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~s~~d~~i~iwd~~~~~~~~~   97 (285)
                      .++.++.++.|.-.|..+|+.+............. .........   .++.. +++.++...++.|.-.|..++     
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~-~~~~~~~~~---~~~~~-~~~v~~~~~~g~l~Alda~tG-----  137 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR-TSCCDAVNR---GVALW-GDKVYVGTLDGRLIALDAKTG-----  137 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG-GCTTCSCCC---CCEEE-BTEEEEECTTSEEEEEETTTC-----
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccc-ccccccccc---Cccee-CCeEEEEeCCCEEEEEECCCC-----
Confidence            56677788999999999998664432211110000 000001111   11111 223444456788888887777     


Q ss_pred             CCCCCccccCCCCceEeecccCce--eeeeEEEecCCCcEEEEec------CCCeEEEEecCCCceEEEEe
Q 023246           98 LSLSPEDLQKREEPQVYSGHRNSQ--TVKGVNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLMV  160 (285)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~------~dg~v~vwd~~~~~~~~~~~  160 (285)
                                 +.+..+.......  .+...-. -.++ .++.+.      ..|.|.-+|.++|+.+..+.
T Consensus       138 -----------~~~w~~~~~~~~~~~~~~~~p~-v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         138 -----------KAIWSQQTTDPAKPYSITGAPR-VVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             -----------CEEEEEECSCTTSSCBCCSCCE-EETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             -----------cEEeccCccCcccceeeeeeee-eecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence                       4444443221100  0100000 0122 333332      24789999999999998775