Citrus Sinensis ID: 023252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
Secondary Structure (PSIPRED)
cEEEccccHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHEHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mfkiklgsnGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLsgllpnpkleasVFSLCFTITYLHyfipygfgstvstrvsnelgagnpkAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
Flexible Loop (DISEMBL)
mfkiklgsnGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARErifegdsqqrqsqeids
Low Complexity Region (SEG)
MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
Disordered region (IsUnstruct)
******GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGK************************
Disordered Region (DISOPRED)
MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASK********************
Disordered Region (DISEMBL)
MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARE*****************
Disordered Region (DISPRO)
MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFE*************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q8GXM8	476	MATE efflux family protei	no	no	0.964	0.577	0.52	9e-79
Q9SIA5	476	MATE efflux family protei	no	no	0.968	0.579	0.514	2e-78
Q9SIA4	476	MATE efflux family protei	no	no	0.968	0.579	0.521	2e-78
Q8RWF5	483	MATE efflux family protei	no	no	0.947	0.559	0.522	8e-77
Q9SIA3	476	MATE efflux family protei	no	no	0.954	0.571	0.518	8e-76
Q9SIA1	477	MATE efflux family protei	no	no	0.947	0.566	0.514	1e-74
Q9LUH3	469	MATE efflux family protei	no	no	0.898	0.545	0.398	1e-47
Q9LUH2	477	MATE efflux family protei	no	no	0.898	0.536	0.410	1e-47
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.961	0.540	0.341	2e-43
Q5RFD2	570	Multidrug and toxin extru	yes	no	0.929	0.464	0.337	4e-35

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  293 bits (750), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 143/275 (52%), Positives = 192/275 (69%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +F + LGSNGAA+A+ LS+WF  ++L  ++++ S CEKTR   S D  SSIK++ ++ VP
Sbjct: 199 VFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVP 258

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA ++C EWW +E+LIL SGLLPNPKLE SV S+C TI  LHY IP G  + VSTRVSN+
Sbjct: 259 SAGLICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNK 318

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+ A+++V A + L   E    S +L  CR+I+GY  S+S+ +V  +AD+ P +C
Sbjct: 319 LGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLC 378

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LS I+D L AVL+GVARG GWQ IGA +N+ AYYLVG P+   LAF  +  GKGL  G+ 
Sbjct: 379 LSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVM 438

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDS 275
            GS VQA LLA+     +W +QA KAR+RI   ++
Sbjct: 439 VGSAVQATLLAIVTASMNWKEQAEKARKRIISTEN 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/276 (51%), Positives = 190/276 (68%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +F   LG NG A+A  +S+WF  ++L  Y+++SS CEKTR   S D  SSIK+F ++ +P
Sbjct: 199 VFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIP 258

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA M+C EWW +E+LIL SGLLPNPKLE SV S+C TI  LHY I  G  + VSTRVSN 
Sbjct: 259 SAAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVISAGVAAAVSTRVSNN 318

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+ A+++V A + L   E    SI+L  CR+I+GYA S+S+ ++  +AD+ P +C
Sbjct: 319 LGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTPLLC 378

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LS I+D   AVL+GVARGSGWQ IGA+ N  +YYLVG P+   LAF  +L GKGL  G+ 
Sbjct: 379 LSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGKGLWCGVV 438

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQ 276
            GS VQA +LA+     +W +QA KAR+RI   +++
Sbjct: 439 VGSTVQATILAIVTASINWKEQAEKARKRIVSTENR 474

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 190/276 (68%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           ++   LGSNGAA+A+ +S+WF V++L  Y++YSS C+KTR   S D  S IK+F  F VP
Sbjct: 199 VYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVP 258

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA MVC EWW +E+LIL SGLLPNPKLE SV S+C T   LHY IP G  + VSTRVSN+
Sbjct: 259 SAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLHYVIPGGVAAAVSTRVSNK 318

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAG P+ A+++V A + L   E    S +L  CR+I+GYA S+S+ +V  +A++ P +C
Sbjct: 319 LGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKEVVDYVANLTPLLC 378

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LS I+D   AVL+GVARGSGWQ IGA  N+ AYYLVG P+   LAF  +L GKGL  G+ 
Sbjct: 379 LSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFNRELNGKGLWCGVV 438

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQ 276
            GS VQA +LA      +W +QA KAR+R+   +++
Sbjct: 439 VGSAVQAIILAFVTASINWKEQAEKARKRMVSSENR 474

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  287 bits (734), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 141/270 (52%), Positives = 182/270 (67%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           ++   LGSNGAALA+GLSYWFNVL+L  Y+++SS CEKTR   S D   S+K+F ++ +P
Sbjct: 202 VYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIP 261

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA M   EW  +E LIL SGLLPNPKLE SV S+C T + LHY IP G G+  S RVSNE
Sbjct: 262 SAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSNE 321

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+ A++AV A I L   E    S +L  CR I GYA S+S+ +V  + ++ P +C
Sbjct: 322 LGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVTELSPLLC 381

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           +S ++D   AVL GVARGSGWQ IGA+ N+ AYYL+G P+   L F   + GKGL IG+ 
Sbjct: 382 ISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGVV 441

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERI 270
            GS  Q  +LA+      W +QA+KAR+RI
Sbjct: 442 VGSTAQGIILAIVTACMSWNEQAAKARQRI 471

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  283 bits (725), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 141/272 (51%), Positives = 187/272 (68%)

Query: 4   IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAV 63
           + LGSNGAALA+ +S+WF  + L  Y+++SS CEKTR   S D  SS+K+F R+ VPSA 
Sbjct: 202 LGLGSNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAA 261

Query: 64  MVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGA 123
           M+C EWW +E+LIL SGLL NPKLE SV S+C T   LHY IP G  + VSTRVSN+LGA
Sbjct: 262 MLCLEWWLFELLILCSGLLQNPKLETSVLSICLTTATLHYVIPVGVAAAVSTRVSNKLGA 321

Query: 124 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSI 183
           G P+ A+++V A + L   E    SI+L   R+I+GYA S+S+ +V  +AD+ P +CLS 
Sbjct: 322 GIPQVARVSVLAGLCLWLVESSFFSILLFAFRNIIGYAFSNSKEVVDYVADLSPLLCLSF 381

Query: 184 IMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGS 243
           ++D   AVL+GVARG GWQ IGA  N+ AYYLVG P+   LAF  +L GKGL  G+  GS
Sbjct: 382 VLDGFTAVLNGVARGCGWQHIGALNNVVAYYLVGAPVGIYLAFSCELNGKGLWCGVVVGS 441

Query: 244 FVQAALLALKIVFTDWGKQASKARERIFEGDS 275
            VQA +LA+     +W +QA KAR+R+   ++
Sbjct: 442 AVQAIILAIVTASMNWKEQAKKARKRLISSEN 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  280 bits (715), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/270 (51%), Positives = 183/270 (67%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           ++   LGSNGAALA+GLSYWFNVL+L  Y+++SS CEKTR   S D   S+K+F ++ +P
Sbjct: 202 VYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIP 261

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA M   EW  +E+LIL SGLLPNPKLE SV S+C T + LH  IP G G+  STR+SNE
Sbjct: 262 SAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLHCVIPMGIGAAGSTRISNE 321

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+ A++AV A I L   E    S +L  C++I GYA S+S+ +V  + ++   +C
Sbjct: 322 LGAGNPEVARLAVFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVVDYVTELSSLLC 381

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LS ++D   +VL GVARGSGWQ IGA+ N+ AYYL+G P+   L F   + GKGL IG+ 
Sbjct: 382 LSFMVDGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGHMNGKGLWIGVI 441

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERI 270
            GS  Q  +LA+      W +QA+KARERI
Sbjct: 442 VGSTAQGIILAIVTACLSWEEQAAKARERI 471

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 149/256 (58%)

Query: 6   LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMV 65
           LG  GA +A  +S W   + LGFY+  S + ++T   FS++ F  +   +  S+PSA MV
Sbjct: 208 LGFIGAPIATSISLWIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMV 267

Query: 66  CFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125
           C E+W++E+L+ L+GL+ NP++  S+ ++C     + Y +  G  +  STRVSNELGAGN
Sbjct: 268 CLEYWAFEILVFLAGLMRNPEITTSLVAICVNTESISYMLTCGLSAATSTRVSNELGAGN 327

Query: 126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIM 185
            K AK A    + L+    + V I +L          S+S  I    A +  F+  SI +
Sbjct: 328 VKGAKKATSVSVKLSLVLALGVVIAILVGHDAWVGLFSNSHVIKEGFASLRFFLAASITL 387

Query: 186 DSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFV 245
           DS+Q VLSGVARG GWQ++   +NLG +YL+G+PI+ +  F  +L  KGL IGL  G F 
Sbjct: 388 DSIQGVLSGVARGCGWQRLATVINLGTFYLIGMPISVLCGFKLKLHAKGLWIGLICGMFC 447

Query: 246 QAALLALKIVFTDWGK 261
           Q+A L L  +F  W K
Sbjct: 448 QSASLLLMTIFRKWTK 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/256 (41%), Positives = 148/256 (57%)

Query: 6   LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMV 65
           LG  GA +A  +S W   L LG Y+  S + ++T   FS++ F  I   +  S+PSA MV
Sbjct: 216 LGFIGAPIATSISLWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMV 275

Query: 66  CFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125
           C E+W++E+L+ L+G++PNP++  S+ ++C     + Y + YG  +  STRVSNELGAGN
Sbjct: 276 CLEYWAFEILVFLAGVMPNPEINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGN 335

Query: 126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIM 185
            K AK A    + L+    + V IVLL          S S  I    A +  F+  SI +
Sbjct: 336 VKGAKKATSVSVKLSLVLALGVVIVLLVGHDGWVGLFSDSYVIKEEFASLRFFLAASITL 395

Query: 186 DSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFV 245
           DS+Q VLSGVARG GWQ++   +NL  +YL+G+PIAA   F  +   KGL IGL  G F 
Sbjct: 396 DSIQGVLSGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFC 455

Query: 246 QAALLALKIVFTDWGK 261
           Q++ L L  +F  W K
Sbjct: 456 QSSSLLLMTIFRKWTK 471

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 156/278 (56%), Gaps = 4/278 (1%)

Query: 4   IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAV 63
           +  G  GAAL +  S+W  V + G YI  S  C++T   FS   F  I  + + +V SAV
Sbjct: 226 LDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAV 285

Query: 64  MVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPY--GFGSTVSTRVSNEL 121
           M+C E W  + L+++SGLL NP +     S+C  + YL++ + +  G  + +S RVSNEL
Sbjct: 286 MLCLEIWYNQGLVIISGLLSNPTISLDAISIC--MYYLNWDMQFMLGLSAAISVRVSNEL 343

Query: 122 GAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICL 181
           GAGNP+ A ++V  + I        + +++L  R  L  A +S   ++  ++D+ P + +
Sbjct: 344 GAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAV 403

Query: 182 SIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT 241
           SI ++ +Q +LSGVA GSGWQ + A+VNL  YY++G+PI  VL F   L   G+  G+  
Sbjct: 404 SIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIA 463

Query: 242 GSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQ 279
           G  +Q   L +  + T+W  +   A +R+    ++ ++
Sbjct: 464 GVILQTLTLIVLTLKTNWTSEVENAAQRVKTSATENQE 501

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 2/267 (0%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           + ++ LG+ G+ALA  +S +   LLL FYI      + T   +S++       F+  +VP
Sbjct: 206 LHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVP 265

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           S +M+C EWW+YEV   LSG+L   +L A   S+ + +  + Y +P GF    S RV N 
Sbjct: 266 SMLMLCMEWWAYEVGSFLSGILGMVELGAQ--SIVYELAIIVYMVPAGFSVAASVRVGNA 323

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAG+ + A+ +    +++     V  S++LL C+  +GY  ++  +I++ +A +VP   
Sbjct: 324 LGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYA 383

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           +S + ++L     GV RGSG QK+GA VN   YY+VG+PI   L F  +L   GL  G+ 
Sbjct: 384 VSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATKLGVMGLWSGII 443

Query: 241 TGSFVQAALLALKIVFTDWGKQASKAR 267
             +  QA      I+  +W K   +A+
Sbjct: 444 ICTVFQAVCFLGFIIQLNWKKACQQAQ 470

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224077218	475	predicted protein [Populus trichocarpa]	0.989	0.593	0.595	1e-94
356515374	480	PREDICTED: MATE efflux family protein DT	1.0	0.593	0.569	7e-91
359488147	483	PREDICTED: LOW QUALITY PROTEIN: MATE eff	0.964	0.569	0.604	2e-90
356567250	462	PREDICTED: MATE efflux family protein DT	1.0	0.616	0.566	3e-90
449447587	459	PREDICTED: MATE efflux family protein DT	0.933	0.579	0.624	5e-90
449481521	459	PREDICTED: MATE efflux family protein 9-	0.933	0.579	0.624	6e-90
255574294	470	TRANSPARENT TESTA 12 protein, putative [	0.950	0.576	0.627	8e-90
356499620	475	PREDICTED: MATE efflux family protein DT	0.961	0.576	0.580	3e-89
359488145	494	PREDICTED: MATE efflux family protein 5-	0.996	0.574	0.605	4e-89
296087229	501	unnamed protein product [Vitis vinifera]	0.996	0.566	0.605	4e-89

>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 168/282 (59%), Positives = 210/282 (74%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           ++K++LG  GAA+A  LS W NV+LLG Y+K+SS CEKTRA  S +    I+EF +  VP
Sbjct: 194 VYKLQLGQKGAAIAYSLSTWLNVILLGLYVKFSSACEKTRAPLSREALYGIREFFQLGVP 253

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA+MVC +WWS E+LILLSGL  NPKLE SV S+C TI+ LH+ IPYGFG+  STRVSNE
Sbjct: 254 SAIMVCLKWWSMELLILLSGLFKNPKLETSVLSICLTISTLHFTIPYGFGAAASTRVSNE 313

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+ A+MAV   + LA  E V VS  L   R +LGYA S+   +V  ++ M P IC
Sbjct: 314 LGAGNPQLARMAVLVALFLAGIESVIVSSGLFLSRQVLGYAYSNDRQVVRYISVMTPLIC 373

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LS IMDSLQAVLSGVARGSGWQKIGA++NLG++YLVG+P+AAVL FV  L+GKGL IG+ 
Sbjct: 374 LSFIMDSLQAVLSGVARGSGWQKIGAYINLGSFYLVGLPLAAVLGFVAHLRGKGLWIGIL 433

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQE 282
            GSFVQ+ LL++    TDW KQA+KARER+FE  S  +  ++
Sbjct: 434 AGSFVQSVLLSIVTACTDWNKQATKARERVFERRSSMKDEEK 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  339 bits (870), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 163/286 (56%), Positives = 207/286 (72%), Gaps = 1/286 (0%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +FK++LG  GAA++  L  WFNV+LL  +++YSS CEKTR  FS +    + +F RF+VP
Sbjct: 194 VFKLELGHVGAAISFSLCVWFNVMLLLSFVRYSSACEKTRIPFSKNALVGVGDFFRFAVP 253

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           +AVMVC +WW+ E+L+LL+GL PNPKLE SV S+C TI+ LH+ IPYGFG+  STRVSNE
Sbjct: 254 AAVMVCLKWWACEILVLLAGLFPNPKLETSVLSICLTISTLHFTIPYGFGAAASTRVSNE 313

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+A ++AV A + LA  E + VS  L  CRHILGYA S    +VH +A M P +C
Sbjct: 314 LGAGNPQAVRVAVSATMFLAVTEGLIVSATLFGCRHILGYAYSDDRMVVHYVAVMTPLLC 373

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LSI  DSLQ VLSGVARGSGWQ +GA+VNLGA+YLVGIP+  VL FV  L+ KGL IG+ 
Sbjct: 374 LSIFTDSLQGVLSGVARGSGWQHLGAYVNLGAFYLVGIPVGIVLGFVAHLRAKGLWIGIV 433

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFE-GDSQQRQSQEIDS 285
           TGS VQ+ LL+L    T+W KQA  ARERIF+     + +S  + S
Sbjct: 434 TGSIVQSILLSLVTALTNWKKQAMMARERIFDVKPPDENESNHMTS 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488147|ref|XP_003633708.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 5-like [Vitis vinifera]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/281 (60%), Positives = 212/281 (75%), Gaps = 6/281 (2%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +FK++LG  GAA+A  LS W NV+LLG Y+KYSS CE TR  FS + F  I EF RF+VP
Sbjct: 196 IFKLELGDIGAAVAFCLSNWHNVILLGLYVKYSSACEATRMKFSKETFLVIGEFFRFAVP 255

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTV------S 114
           +AVMVC +WWS E++ LLSGLLPNPKLE+SV ++C TIT LH+ IPYG G+        +
Sbjct: 256 AAVMVCLKWWSCELITLLSGLLPNPKLESSVLAICLTITTLHFTIPYGLGAVARHGMFCN 315

Query: 115 TRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLAD 174
           TRVSNELGAGN +AA++AV A+I+LA  + VTVS VL  CR++LG A S+ + +V  +A 
Sbjct: 316 TRVSNELGAGNSQAAQIAVWAVILLAVIDAVTVSTVLFRCRYVLGEAYSNDKQVVGYVAV 375

Query: 175 MVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKG 234
           M P IC+SI+MDSLQ VLSGVARGSG QKIGA+VNLGA+YLVG+P+A +L FV +LKGK 
Sbjct: 376 MTPLICISIMMDSLQGVLSGVARGSGQQKIGAYVNLGAFYLVGVPVAVILGFVLRLKGKR 435

Query: 235 LLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDS 275
           L IG+  GS VQA LL L   FT+W KQ +KARER+ EG S
Sbjct: 436 LWIGIVAGSVVQATLLFLITGFTNWKKQENKARERMIEGAS 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567250|ref|XP_003551834.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 162/286 (56%), Positives = 206/286 (72%), Gaps = 1/286 (0%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +FK++LG  GAA++  L  WFNV+LL  +++YSS CEKTR  FS +    +  F RF+VP
Sbjct: 176 VFKLELGHVGAAISFSLCVWFNVMLLLSFVRYSSACEKTRIPFSKNALVGVGVFFRFAVP 235

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           +AVMVC +WW+ E+L+LL+GL PNPKLE SV S+C TI+ LH+ IPYGFG+  STRVSNE
Sbjct: 236 AAVMVCLKWWACEILVLLAGLFPNPKLETSVLSICLTISTLHFTIPYGFGAAASTRVSNE 295

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+A ++AV A + LA  E + VS  L  CRH+LGYA S    +VH +A M P +C
Sbjct: 296 LGAGNPQAVRVAVSATMFLAVTEGLIVSATLFGCRHLLGYAYSDDRMVVHYVAVMTPLLC 355

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LSI  DSLQ VLSGVARGSGWQ +GA+VNLGA+YLVGIP+  VL FV  L+ KGL IG+ 
Sbjct: 356 LSIFTDSLQGVLSGVARGSGWQHLGAYVNLGAFYLVGIPVGIVLGFVAHLRAKGLWIGIV 415

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGD-SQQRQSQEIDS 285
           TGS VQ+ LL+L    T+W KQA  ARERIF+     + +S  + S
Sbjct: 416 TGSIVQSILLSLVTALTNWKKQAMMARERIFDAKPPDENESNHMTS 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447587|ref|XP_004141549.1| PREDICTED: MATE efflux family protein DTX1-like [Cucumis sativus]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 166/266 (62%), Positives = 204/266 (76%)

Query: 10  GAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEW 69
           GAALA+G+SYW N L L  YI +S  C KTRA FS +  SSI +FIR ++PSA+MVC EW
Sbjct: 193 GAALALGISYWLNALFLCLYIFFSPSCNKTRAPFSSEAISSIPKFIRLALPSALMVCLEW 252

Query: 70  WSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAA 129
           WSYEV++LLSGLLPNPK+EASV S+CF+ITYLHYFIPYG G+TVSTRVSNELGAGNP+ A
Sbjct: 253 WSYEVILLLSGLLPNPKVEASVLSICFSITYLHYFIPYGLGATVSTRVSNELGAGNPEGA 312

Query: 130 KMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQ 189
           K+AV  + +L   E + VS+ L  C   LGYA +S   I + +A M P ICLSI++DS  
Sbjct: 313 KVAVKVVGVLGIIESIVVSLTLFGCHKFLGYAFTSDTEIANNIASMWPLICLSILIDSFL 372

Query: 190 AVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAAL 249
            VLSGVARGSGWQ +GA+VNLG+YY+VGIP+AAVLAFV  L+ KGL IGL +G+ +Q  L
Sbjct: 373 GVLSGVARGSGWQNLGAYVNLGSYYIVGIPLAAVLAFVVHLRVKGLWIGLVSGATLQTFL 432

Query: 250 LALKIVFTDWGKQASKARERIFEGDS 275
            AL   FT+W +QA KARER+ EG +
Sbjct: 433 FALITTFTNWHQQALKARERVLEGGN 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481521|ref|XP_004156207.1| PREDICTED: MATE efflux family protein 9-like [Cucumis sativus]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 166/266 (62%), Positives = 204/266 (76%)

Query: 10  GAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEW 69
           GAALA+G+SYW N L L  YI +S  C KTRA FS +  SSI +FIR ++PSA+MVC EW
Sbjct: 193 GAALALGISYWLNALFLCLYIFFSPSCNKTRAPFSSEAISSIPKFIRLALPSALMVCLEW 252

Query: 70  WSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAA 129
           WSYEV++LLSGLLPNPK+EASV S+CF+ITYLHYFIPYG G+TVSTRVSNELGAGNP+ A
Sbjct: 253 WSYEVILLLSGLLPNPKVEASVLSICFSITYLHYFIPYGLGATVSTRVSNELGAGNPEGA 312

Query: 130 KMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQ 189
           K+AV  + +L   E + VS+ L  C   LGYA +S   I + +A M P ICLSI++DS  
Sbjct: 313 KVAVKVVGVLGIIESIVVSLTLFGCHKFLGYAFTSDTEIANNIASMWPLICLSILIDSFL 372

Query: 190 AVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAAL 249
            VLSGVARGSGWQ +GA+VNLG+YY+VGIP+AAVLAFV  L+ KGL IGL +G+ +Q  L
Sbjct: 373 GVLSGVARGSGWQNLGAYVNLGSYYIVGIPLAAVLAFVVHLRVKGLWIGLVSGATLQTFL 432

Query: 250 LALKIVFTDWGKQASKARERIFEGDS 275
            AL   FT+W +QA KARER+ EG +
Sbjct: 433 FALITTFTNWHQQALKARERVLEGGN 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574294|ref|XP_002528061.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532522|gb|EEF34311.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 170/271 (62%), Positives = 206/271 (76%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           ++K++LG  G ALA  LS W NV+LLGFYIKYSS C KTR+  S   F  + EF R  VP
Sbjct: 200 VYKLELGYKGPALAFSLSVWLNVILLGFYIKYSSACNKTRSPLSKHAFYGVGEFFRLGVP 259

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SAVMVC +WWS E+L LLSGLLPNPKLE SV S+C TI+ LH+ IPYGFG+  STRVSNE
Sbjct: 260 SAVMVCLKWWSMELLTLLSGLLPNPKLETSVLSICLTISTLHFTIPYGFGAAASTRVSNE 319

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP++A++AV   I LA AE   VS  + F RH+LGYA S+++ +V+ +A M P IC
Sbjct: 320 LGAGNPQSARLAVMVAICLAGAEAAIVSATVFFSRHVLGYAYSNNKQVVNYVAIMAPLIC 379

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LS I+DSLQAVLSGVARG GWQKIGA++NLGA+YLVG+P+ AVL FV  LKGKGL IG+ 
Sbjct: 380 LSFILDSLQAVLSGVARGCGWQKIGAYINLGAFYLVGLPVGAVLGFVSHLKGKGLWIGII 439

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIF 271
            GS VQ+ LL+L    T+W KQ +KARERIF
Sbjct: 440 AGSIVQSTLLSLITGSTNWKKQVTKARERIF 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499620|ref|XP_003518635.1| PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max] gi|356499622|ref|XP_003518636.1| PREDICTED: MATE efflux family protein DTX1-like isoform 2 [Glycine max]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/274 (58%), Positives = 200/274 (72%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +FK+ LG  GAA++  L  WFNV++L  +++YSS CEKTR SFS +    + EF RF+VP
Sbjct: 189 VFKLGLGHVGAAISFSLCVWFNVIMLLSFVRYSSACEKTRISFSKNALVGVGEFFRFAVP 248

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           +AVMVC +WW+ E+L+LL+GL PNPKLE SV S+C TI+ LH+ IPYGFG+  STRVSNE
Sbjct: 249 AAVMVCLKWWACEILVLLAGLFPNPKLETSVLSICLTISTLHFTIPYGFGAAASTRVSNE 308

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+A  +AV A + LA  E   VS  L  CRHILGYA S    +VH +A M+P +C
Sbjct: 309 LGAGNPQAVHVAVSATMFLAVTEGFIVSATLFGCRHILGYAYSDDRMVVHYVAVMIPLLC 368

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LSI  DSLQ VLSGVARGSGWQ +GA+VNLGA+YLVGIP+  +L FV   + KGL IG+ 
Sbjct: 369 LSIFTDSLQGVLSGVARGSGWQHLGAYVNLGAFYLVGIPVGILLGFVAHFRAKGLWIGIV 428

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGD 274
           TGS VQ+ LL+L    T+W KQA  ARER+F+  
Sbjct: 429 TGSIVQSILLSLITALTNWKKQAIMARERVFDAK 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 172/284 (60%), Positives = 218/284 (76%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +FK++LG+ GAA+A+ +S W NV+LL  Y+KYSS CEKTR SFS D F  + EF  F+VP
Sbjct: 199 VFKLELGNVGAAVAISISSWLNVVLLVLYVKYSSACEKTRMSFSKDAFFVMGEFFHFAVP 258

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           +AVMVC +WWS E+L LLSGLLPNPKLE+S+ ++C TIT LH+ IPYG G+  STRVSNE
Sbjct: 259 AAVMVCLKWWSCELLTLLSGLLPNPKLESSILAICLTITTLHFTIPYGLGAVASTRVSNE 318

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+AA++AV A++ LA  E   VS  L  CR++LGYA SS + IV  +A M P IC
Sbjct: 319 LGAGNPQAARVAVWAVMFLAIIETTVVSTTLFCCRYVLGYAYSSDKQIVDNVAVMAPLIC 378

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LSI+MDS+Q VLSGVARGSGWQ IGA++NLGA+Y+VG+P+A +L FV  LK KGL IG+ 
Sbjct: 379 LSIVMDSIQGVLSGVARGSGWQHIGAYINLGAFYVVGLPVAIILGFVVHLKAKGLWIGIV 438

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEID 284
           TGS VQ+ LL++   FT+W KQA+KARERIFEG S      E++
Sbjct: 439 TGSVVQSTLLSIITGFTNWKKQANKARERIFEGPSSVENRSELN 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087229|emb|CBI33603.3| unnamed protein product [Vitis vinifera]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 172/284 (60%), Positives = 218/284 (76%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +FK++LG+ GAA+A+ +S W NV+LL  Y+KYSS CEKTR SFS D F  + EF  F+VP
Sbjct: 162 VFKLELGNVGAAVAISISSWLNVVLLVLYVKYSSACEKTRMSFSKDAFFVMGEFFHFAVP 221

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           +AVMVC +WWS E+L LLSGLLPNPKLE+S+ ++C TIT LH+ IPYG G+  STRVSNE
Sbjct: 222 AAVMVCLKWWSCELLTLLSGLLPNPKLESSILAICLTITTLHFTIPYGLGAVASTRVSNE 281

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGNP+AA++AV A++ LA  E   VS  L  CR++LGYA SS + IV  +A M P IC
Sbjct: 282 LGAGNPQAARVAVWAVMFLAIIETTVVSTTLFCCRYVLGYAYSSDKQIVDNVAVMAPLIC 341

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           LSI+MDS+Q VLSGVARGSGWQ IGA++NLGA+Y+VG+P+A +L FV  LK KGL IG+ 
Sbjct: 342 LSIVMDSIQGVLSGVARGSGWQHIGAYINLGAFYVVGLPVAIILGFVVHLKAKGLWIGIV 401

Query: 241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEID 284
           TGS VQ+ LL++   FT+W KQA+KARERIFEG S      E++
Sbjct: 402 TGSVVQSTLLSIITGFTNWKKQANKARERIFEGPSSVENRSELN 445

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.989	0.581	0.521	1.4e-78
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.964	0.577	0.52	3.1e-74
TAIR|locus:2050180	476	AT2G04050 "AT2G04050" [Arabido	0.968	0.579	0.521	4e-74
TAIR|locus:2050190	476	DTX1 "AT2G04040" [Arabidopsis	0.968	0.579	0.514	6.5e-74
TAIR|locus:2050230	483	AT2G04100 "AT2G04100" [Arabido	0.947	0.559	0.522	7.5e-73
TAIR|locus:2050225	476	AT2G04070 "AT2G04070" [Arabido	0.947	0.567	0.522	3.2e-72
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.992	0.581	0.494	1.4e-71
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.954	0.564	0.5	4.3e-70
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.964	0.565	0.505	1.4e-69
TAIR|locus:2027834	476	AT1G73700 "AT1G73700" [Arabido	0.985	0.590	0.491	2.4e-69

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 147/282 (52%), Positives = 199/282 (70%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             +FK  LGS GAA+A+G+SYW NV +LG Y+ +SS C K+RA+ S+ +F  + EF RF +P
Sbjct:   198 VFKFGLGSLGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGIP 257

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA M+C EWWS+E L+LLSG+LPNPKLEASV S+C +     Y IP   G+  STRV+NE
Sbjct:   258 SASMICLEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANE 317

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGNPK A+MAV   +++   E + V  ++   R++ GY  SS   +V  +  M P + 
Sbjct:   318 LGAGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAPLLS 377

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             LS+I D+L A LSGVARGSG Q IGA+VNL AYYL GIP A +LAF F+++G+GL IG+ 
Sbjct:   378 LSVIFDALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAFGFKMRGRGLWIGIT 437

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQE 282
              GS VQA LL L ++ T+W KQA KARER+   + ++++S+E
Sbjct:   438 VGSCVQAVLLGLIVILTNWKKQARKARERVMGDEYEEKESEE 479

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 143/275 (52%), Positives = 192/275 (69%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             +F + LGSNGAA+A+ LS+WF  ++L  ++++ S CEKTR   S D  SSIK++ ++ VP
Sbjct:   199 VFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVP 258

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA ++C EWW +E+LIL SGLLPNPKLE SV S+C TI  LHY IP G  + VSTRVSN+
Sbjct:   259 SAGLICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNK 318

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGNP+ A+++V A + L   E    S +L  CR+I+GY  S+S+ +V  +AD+ P +C
Sbjct:   319 LGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLC 378

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             LS I+D L AVL+GVARG GWQ IGA +N+ AYYLVG P+   LAF  +  GKGL  G+ 
Sbjct:   379 LSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVM 438

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDS 275
              GS VQA LLA+     +W +QA KAR+RI   ++
Sbjct:   439 VGSAVQATLLAIVTASMNWKEQAEKARKRIISTEN 473

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 144/276 (52%), Positives = 190/276 (68%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             ++   LGSNGAA+A+ +S+WF V++L  Y++YSS C+KTR   S D  S IK+F  F VP
Sbjct:   199 VYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVP 258

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA MVC EWW +E+LIL SGLLPNPKLE SV S+C T   LHY IP G  + VSTRVSN+
Sbjct:   259 SAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLHYVIPGGVAAAVSTRVSNK 318

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAG P+ A+++V A + L   E    S +L  CR+I+GYA S+S+ +V  +A++ P +C
Sbjct:   319 LGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKEVVDYVANLTPLLC 378

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             LS I+D   AVL+GVARGSGWQ IGA  N+ AYYLVG P+   LAF  +L GKGL  G+ 
Sbjct:   379 LSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFNRELNGKGLWCGVV 438

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQ 276
              GS VQA +LA      +W +QA KAR+R+   +++
Sbjct:   439 VGSAVQAIILAFVTASINWKEQAEKARKRMVSSENR 474

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 142/276 (51%), Positives = 190/276 (68%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             +F   LG NG A+A  +S+WF  ++L  Y+++SS CEKTR   S D  SSIK+F ++ +P
Sbjct:   199 VFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIP 258

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA M+C EWW +E+LIL SGLLPNPKLE SV S+C TI  LHY I  G  + VSTRVSN 
Sbjct:   259 SAAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVISAGVAAAVSTRVSNN 318

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGNP+ A+++V A + L   E    SI+L  CR+I+GYA S+S+ ++  +AD+ P +C
Sbjct:   319 LGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTPLLC 378

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             LS I+D   AVL+GVARGSGWQ IGA+ N  +YYLVG P+   LAF  +L GKGL  G+ 
Sbjct:   379 LSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGKGLWCGVV 438

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQ 276
              GS VQA +LA+     +W +QA KAR+RI   +++
Sbjct:   439 VGSTVQATILAIVTASINWKEQAEKARKRIVSTENR 474

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;IDA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015691 "cadmium ion transport" evidence=IDA

GO:0051238 "sequestering of metal ion" evidence=IDA

TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 141/270 (52%), Positives = 182/270 (67%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             ++   LGSNGAALA+GLSYWFNVL+L  Y+++SS CEKTR   S D   S+K+F ++ +P
Sbjct:   202 VYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIP 261

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA M   EW  +E LIL SGLLPNPKLE SV S+C T + LHY IP G G+  S RVSNE
Sbjct:   262 SAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSNE 321

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGNP+ A++AV A I L   E    S +L  CR I GYA S+S+ +V  + ++ P +C
Sbjct:   322 LGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVTELSPLLC 381

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             +S ++D   AVL GVARGSGWQ IGA+ N+ AYYL+G P+   L F   + GKGL IG+ 
Sbjct:   382 ISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGVV 441

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERI 270
              GS  Q  +LA+      W +QA+KAR+RI
Sbjct:   442 VGSTAQGIILAIVTACMSWNEQAAKARQRI 471

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050225 AT2G04070 "AT2G04070" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 141/270 (52%), Positives = 186/270 (68%)

Query:     6 LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMV 65
             LGSNGAALA+ +S+WF  + L  Y+++SS CEKTR   S D  SS+K+F R+ VPSA M+
Sbjct:   204 LGSNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAML 263

Query:    66 CFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125
             C EWW +E+LIL SGLL NPKLE SV S+C T   LHY IP G  + VSTRVSN+LGAG 
Sbjct:   264 CLEWWLFELLILCSGLLQNPKLETSVLSICLTTATLHYVIPVGVAAAVSTRVSNKLGAGI 323

Query:   126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIM 185
             P+ A+++V A + L   E    SI+L   R+I+GYA S+S+ +V  +AD+ P +CLS ++
Sbjct:   324 PQVARVSVLAGLCLWLVESSFFSILLFAFRNIIGYAFSNSKEVVDYVADLSPLLCLSFVL 383

Query:   186 DSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFV 245
             D   AVL+GVARG GWQ IGA  N+ AYYLVG P+   LAF  +L GKGL  G+  GS V
Sbjct:   384 DGFTAVLNGVARGCGWQHIGALNNVVAYYLVGAPVGIYLAFSCELNGKGLWCGVVVGSAV 443

Query:   246 QAALLALKIVFTDWGKQASKARERIFEGDS 275
             QA +LA+     +W +QA KAR+R+   ++
Sbjct:   444 QAIILAIVTASMNWKEQAKKARKRLISSEN 473

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 140/283 (49%), Positives = 190/283 (67%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             ++K  LG  G ALA+ LSYW   + LG ++ YSS C +TRA  ++++F  ++EFI++++P
Sbjct:   203 VYKSGLGHIGGALALSLSYWLYAIFLGSFMYYSSACSETRAPLTMEIFEGVREFIKYALP 262

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA M+C EWWSYE++ILLSGLLPNP+LE SV S+CF    + Y IP    +  STR+SNE
Sbjct:   263 SAAMLCLEWWSYELIILLSGLLPNPQLETSVLSICFETLSITYSIPLAIAAAASTRISNE 322

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGN +AA + V A + LA  + + VS+ LL  RH+ G+  SS +  +  +A M P + 
Sbjct:   323 LGAGNSRAAHIVVYAAMSLAVMDALMVSMSLLAGRHVFGHVFSSDKKTIEYVAKMAPLVS 382

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             +SII+DSLQ VLSGVA G GWQ IGA++N GA+YL GIPIAA LAF   LKG GL IG+ 
Sbjct:   383 ISIILDSLQGVLSGVASGCGWQHIGAYINFGAFYLWGIPIAASLAFWVHLKGVGLWIGIL 442

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEI 283
              G+ +Q  LLAL    T+W  QA +ARER+      +    E+
Sbjct:   443 AGAVLQTLLLALVTGCTNWKTQAREARERMAVAHESELTESEL 485

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 137/274 (50%), Positives = 182/274 (66%)

Query:     3 KIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSA 62
             K   G+ GAA ++G+SYW N + L  Y+K SS C +TR   S DVF     F +F++PSA
Sbjct:   202 KFDFGAKGAAASIGISYWLNAVFLWVYMKRSSRCVETRIYMSKDVFVHTNIFFQFAIPSA 261

Query:    63 VMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELG 122
             +M C EW ++EV+ LLSGLLPN KLE SV S+C T + LHY +  G G   ST V+NELG
Sbjct:   262 MMCCLEWLAFEVITLLSGLLPNSKLETSVISICLTTSSLHYNLVNGIGDAASTNVANELG 321

Query:   123 AGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLS 182
             AGNP+ A+ +  A II+AA E V VS  L   R +  YA S+ E ++  + D+ P +C+S
Sbjct:   322 AGNPRGARDSAAAAIIIAAVESVIVSSSLFLSRSVWPYAYSNVEEVISYVTDITPILCIS 381

Query:   183 IIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG 242
             I+MDS   VLSG+ RG+GWQKIGA+VN+ +YY++GIP+  +L F     GKGL  GL TG
Sbjct:   382 ILMDSFLTVLSGIVRGTGWQKIGAYVNITSYYVIGIPVGLLLCFHLHFNGKGLWAGLVTG 441

Query:   243 SFVQAALLALKIVFTDWGKQASKARERIFEGDSQ 276
             S +Q  +L L I FT+W K+A KARERI  GD +
Sbjct:   442 STLQTLILFLVIGFTNWSKEAIKARERI--GDEK 473

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 139/275 (50%), Positives = 180/275 (65%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             +FK  LG  GAALA  +SYW NV+LL  Y+K+S  C  T   FS +    I  F+R +VP
Sbjct:   198 VFKSGLGFQGAALANSISYWLNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVP 257

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SA+MVC E WS+E+L+LLSGLLPNP LE SV S+C   +   + IP+G     STR+SNE
Sbjct:   258 SALMVCLEMWSFELLVLLSGLLPNPVLETSVLSICLNTSGTMWMIPFGLSGAASTRISNE 317

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGNPK AK+AV  +I +A AE + +  VL+  R+I G A SS   +V  +A M+P + 
Sbjct:   318 LGAGNPKVAKLAVRVVICIAVAESIVIGSVLILIRNIWGLAYSSELEVVSYVASMMPILA 377

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
             L   +DSLQ VLSGVARG GWQKIGA +NLG+YYLVG+P   +LAF F + G+GL +G+ 
Sbjct:   378 LGNFLDSLQCVLSGVARGCGWQKIGAIINLGSYYLVGVPSGLLLAFHFHVGGRGLWLGII 437

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDS 275
                 VQ   L L  +FT+W ++A KA  RI    S
Sbjct:   438 CALVVQVFGLGLVTIFTNWDEEAKKATNRIESSSS 472

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 138/281 (49%), Positives = 180/281 (64%)

Query:     1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
             + K  LG  GAALA+ +SYWFNV+LL  Y+K+S  C  +   FS + F  + +F + + P
Sbjct:   196 VLKTGLGYRGAALAISVSYWFNVILLSCYVKFSPSCSHSWTGFSKEAFQELYDFSKIAFP 255

Query:    61 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
             SAVMVC E WS+E+L+L SGLLPNP LE SV S+C   +   + I  G G   S RVSNE
Sbjct:   256 SAVMVCLELWSFELLVLASGLLPNPVLETSVLSICLNTSLTIWQISVGLGGAASIRVSNE 315

Query:   121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
             LGAGNP+ AK+AV  I+ +A AE + V  VLL  R ILG+A SS   I+   A M+P + 
Sbjct:   316 LGAGNPQVAKLAVYVIVGIAVAEGIVVVTVLLSIRKILGHAFSSDPKIIAYAASMIPIVA 375

Query:   181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
                 +D LQ VLSGVARG GWQKIGA VNLG+YYLVG+P+  +L F F + G+GL +G+ 
Sbjct:   376 CGNFLDGLQCVLSGVARGCGWQKIGACVNLGSYYLVGVPLGLLLGFHFHIGGRGLWLGIV 435

Query:   241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQ 281
             T   VQ   L+L  +FT+W K+A KA  R+   D +    Q
Sbjct:   436 TALSVQVLCLSLVTIFTNWDKEAKKATNRVGSSDDKDGDVQ 476

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IV000232 hypothetical protein (475 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	1e-97
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	5e-30
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	1e-27
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	7e-25
pfam01554	161	pfam01554, MatE, MatE	4e-23
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	5e-20
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	6e-17
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	8e-16
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	6e-14
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	9e-13
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-12
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	1e-08
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	4e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	2e-07
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	4e-07
PRK00187	464	PRK00187, PRK00187, multidrug efflux protein NorA;	2e-06
cd13149	434	cd13149, MATE_like_2, Uncharacterized subfamily of	4e-04
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	0.003

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  292 bits (751), Expect = 1e-97
 Identities = 126/264 (47%), Positives = 169/264 (64%), Gaps = 1/264 (0%)

Query: 2   FKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPS 61
           F + LG  GAALA  +SYW  V+LL  YI +S   + T   FS + F     F++ ++PS
Sbjct: 174 FVLGLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPS 233

Query: 62  AVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNEL 121
           A+M+C EWW++E+L+LL+GLLP   +  +  S+C T T L Y IP G     S RV NEL
Sbjct: 234 ALMLCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNEL 292

Query: 122 GAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICL 181
           GAGNPK AK+A    +IL+    V V+I+LL  R +  Y  +S E ++  +AD++P + L
Sbjct: 293 GAGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILAL 352

Query: 182 SIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT 241
             I D LQAVLSGV RG G QK+GA+VNL AYYL+G+P+  +LAFV  L  KGL IGL  
Sbjct: 353 FQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIA 412

Query: 242 GSFVQAALLALKIVFTDWGKQASK 265
           G  +QA +L L I+ TDW K+A K
Sbjct: 413 GLILQAVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score =  117 bits (295), Expect = 5e-30
 Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 4/255 (1%)

Query: 6   LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDV-FSSIKEFIRFSVPSAVM 64
           LG  GAALA  ++ W   LLL  Y+              +      +KE +R  +P  + 
Sbjct: 194 LGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLE 253

Query: 65  VCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 124
              E   + +L L    L    L  + + +   I    +  P+G    V+  V   LGAG
Sbjct: 254 SLSESLGFLLLTLFVARLGTVAL--AAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAG 311

Query: 125 NPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSII 184
           N K A+ A    + L+    + ++++LL  R  +    ++   ++     ++    L   
Sbjct: 312 NYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQP 371

Query: 185 MDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSF 244
            D +Q VLSGV RG+G  KI   ++L +Y+   +P+A +L F F L   G+ IG      
Sbjct: 372 FDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLI 430

Query: 245 VQAALLALKIVFTDW 259
           ++A LL L++    W
Sbjct: 431 LRAILLLLRLRRGRW 445

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score =  110 bits (277), Expect = 1e-27
 Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 14/255 (5%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTR--ASFSIDVFSSIKEFIRFSVPSA 62
            LG  GA LA  + YW   L L FYI+      + R  A F    ++ +KE +R  +P  
Sbjct: 180 ALGGAGAGLATAIVYWLMFLALAFYIRRHKRFRRYRLFARFWRPDWARLKELLRLGLPIG 239

Query: 63  VMVCFEWWSYEVLILLSGLLPNPKLEA-----SVFSLCFTITYLHYFIPYGFGSTVSTRV 117
           + + FE   +  + LL G L    L A     +  SL F +       P G     + RV
Sbjct: 240 LTIFFEVSLFAAVALLMGRLGTTVLAAHQIALNFASLLFMV-------PLGISMAATVRV 292

Query: 118 SNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 177
              LGAG+P  A+ A    + L        +++LL     +    ++   ++   A ++ 
Sbjct: 293 GFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDPAVIALAASLLV 352

Query: 178 FICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLI 237
           F  L  + D +Q V +G  RG    ++   + L +Y+ +G+P+  +LAF   L   G+ I
Sbjct: 353 FAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPLGYLLAFTTGLGAFGVWI 412

Query: 238 GLATGSFVQAALLAL 252
           GL  G  + A LL  
Sbjct: 413 GLIIGLALAAILLLW 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  101 bits (254), Expect = 7e-25
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 2/174 (1%)

Query: 6   LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMV 65
           LG  GAALA  +SYW   LLL +YIK + +            +  +K  ++  +P A  V
Sbjct: 170 LGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRV 229

Query: 66  CFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN 125
             E  S+ +L LL   L    +  +   +   +  L +   +GFG  VS  V   LGAG+
Sbjct: 230 ILESLSFALLALLVARL--GSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGD 287

Query: 126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFI 179
           PK AK      + L+    + ++I+L+  R  +    ++   ++   A  + F+
Sbjct: 288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 92.2 bits (230), Expect = 4e-23
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 3/164 (1%)

Query: 60  PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSN 119
           P  +    +     +  L  G L    +  +  S+  +I  L +    G  + ++T V  
Sbjct: 1   PIILENLLQSLYSLIDTLFVGHLG--AVALAAVSIANSIASLIFMFLLGLSTALTTLVGQ 58

Query: 120 ELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFI 179
            LGAGN K A +A+   +IL+    + ++++++  R  +    +  E ++   +  +  +
Sbjct: 59  ALGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRIL 118

Query: 180 CLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAV 223
            L I   SLQ VLSG  RG+G  K   ++NL +  L+ IP+  +
Sbjct: 119 ALGIPFLSLQFVLSGFLRGAGDTKPPLYINLIS-LLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 88.7 bits (221), Expect = 5e-20
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 2/255 (0%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVM 64
            LG  GAALA  +S     LLL F +       K            IK+ +R  +P+ + 
Sbjct: 179 GLGVAGAALATVISRVVGALLLLFLLLRGRLPIKISFKGFRLDRKIIKKLLRIGLPAGLE 238

Query: 65  VCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG 124
                  + VL+ +        L A  + +   I  L +   +GF    ST V   LGAG
Sbjct: 239 QLLRSLGFLVLLAIVASYGTAALAA--YQIGLRIESLAFMPGFGFSMAASTLVGQNLGAG 296

Query: 125 NPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSII 184
           +P  A+      + L    M  + ++L      L    +    ++      +  + LS  
Sbjct: 297 DPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPEVIELGVLYLRIVALSQP 356

Query: 185 MDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSF 244
             ++  VLSG  RG+G  +    +NL + +LV +P+A +L FV  L   G+ + +   + 
Sbjct: 357 FLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFVLGLGLTGIWLAMFVDTI 416

Query: 245 VQAALLALKIVFTDW 259
           V+A LL  +     W
Sbjct: 417 VRAILLLYRFRKGKW 431

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 79.7 bits (197), Expect = 6e-17
 Identities = 49/252 (19%), Positives = 101/252 (40%), Gaps = 2/252 (0%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVP 60
           +   +LG  GAALA  +SY    LLL  Y++   +  K + S        ++  +R  +P
Sbjct: 168 LGPPELGIAGAALATVISYVIGALLLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLP 227

Query: 61  SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 120
           SA+          +++ +           + +++ F I  L +    G        V   
Sbjct: 228 SAIQNSLLSLGLLIIVAIVAAFGGA-AALAAYTVAFRIASLAFMPALGLAQAALPVVGQN 286

Query: 121 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 180
           LGAGN   A+      +++       + +++L     +    ++    +      +  + 
Sbjct: 287 LGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLELAVSYLRILA 346

Query: 181 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           +  +   +  VL    + +G       V+L +Y++V +P+A VLA++  L   G+ + L 
Sbjct: 347 IYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLAYL-GLGLYGIWLALV 405

Query: 241 TGSFVQAALLAL 252
               + A +L L
Sbjct: 406 ISLILAALVLLL 417

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 76.8 bits (190), Expect = 8e-16
 Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 15/253 (5%)

Query: 6   LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEK--TRASFSIDVFSSIKEFIRFSVPSAV 63
           +G  GAA+A  ++   ++L     +       +   R ++  D    ++  +R  +PS +
Sbjct: 184 MGIAGAAIATVIAEAVSLLFFLLLLFRRKNRRRFGLRRAWRFD-RELLRRILRLGLPSGL 242

Query: 64  MVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELG 122
               +  ++ V  LL G L     E +  ++ F+I     F+P  G G  VS+ V   LG
Sbjct: 243 QFFLDVGAFTVFFLLIGRLG--TTELAATNIVFSI-NSLAFLPMIGLGIAVSSLVGQALG 299

Query: 123 AGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRH--ILGYALSSSENIVHRLA-DMVPFI 179
           AG P  A       + LA A M+ + I+ L      +  +   +   ++  LA  ++ F+
Sbjct: 300 AGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGADFALIAELAVPLLRFV 359

Query: 180 CLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGL 239
              I+ D+L  V +G  RG+G  +      L   +L  +P A +L  +        L G 
Sbjct: 360 AAYILFDALALVFAGALRGAGDTRFVMLAELIVAWLYLLPPAYLLVVL-----GAGLAGA 414

Query: 240 ATGSFVQAALLAL 252
            T   V   +LAL
Sbjct: 415 WTVETVYVIVLAL 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 71.0 bits (175), Expect = 6e-14
 Identities = 62/264 (23%), Positives = 109/264 (41%), Gaps = 22/264 (8%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTR--ASFSIDVFSSIKEFIRFSVPSA 62
           +LG  G  +A  + YW   L +  YIK +      R         ++ IK  ++  +P  
Sbjct: 190 ELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIG 249

Query: 63  VMVCFEWWSYEVLILLSGLLPNPKLEA-----SVFSLCFTITYLHYFIPYGFGSTVSTRV 117
           + + FE   + V+ LL   L    + A     +  SL        + +P      ++ RV
Sbjct: 250 LAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-------FMLPLSLAMALTIRV 302

Query: 118 SNELGAGNPKAAKMAV-CAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMV 176
             ELGAG    A+      + +     ++T   ++LF   I    L + +  V  LA   
Sbjct: 303 GFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIAL--LYTDDPEVVALA--S 358

Query: 177 PFICLSII---MDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGK 233
             +  + +    D++Q + SG  RG    ++  F+   AY+++G+P+  +LA    +   
Sbjct: 359 HLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPF 418

Query: 234 GLLIGLATGSFVQAALLALKIVFT 257
           G  IGL  G    A LL L++   
Sbjct: 419 GFWIGLIIGLTAAAILLLLRLRKL 442

Length = 456

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 8/260 (3%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYI--KYSSECEKTRASFSIDVFSSIKEFIRFSVPSA 62
            LG  GAALA  +S      ++G Y+  K     + +      D +  +K+  R  +PS+
Sbjct: 190 GLGVAGAALATVISR-GIAAVIGLYLLFKGRVGLKISLRDLKPD-WEWLKKIFRIGLPSS 247

Query: 63  VMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELG 122
           +        + V+  L        + A  + +   I  L +   +G     ST V   LG
Sbjct: 248 IEQSARALGFTVMTALVAGFGTVVVAA--YGIGNRIISLVFLPAFGLARATSTMVGQNLG 305

Query: 123 AGNPKAAKMAVCAIIILAAAEMVTVS-IVLLFCRHILGYALSSSENIVHRLADMVPFICL 181
           AG    A+  V    +L    +V    +  LF   I+   ++  E I    AD +  +  
Sbjct: 306 AGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDPEVIKEG-ADFLRIVAP 364

Query: 182 SIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT 241
           S     L  V++G  RGSG       +++   +++ IP+A +LA+V  L   G+ I +A 
Sbjct: 365 SFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAYVLGLGVTGIWIAMAI 424

Query: 242 GSFVQAALLALKIVFTDWGK 261
            + V A +         W K
Sbjct: 425 SNIVAALIALAWFKRGTWKK 444

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 57/266 (21%), Positives = 117/266 (43%), Gaps = 16/266 (6%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEK-TRASFSIDVFSSIKEFIRFSV 59
           +    +G  GAALA  ++   +VLL  +Y++      K +   F  D    +KE ++  +
Sbjct: 174 IAVFHMGVAGAALATVIAQAISVLLALYYLRKKKLPFKLSLKDFRFD-KEILKEILKIGL 232

Query: 60  PSAVMVCFEWWSYEVLILLSGLLPNPKLE------ASVFSLCFTITYLHYFIPYGFGSTV 113
           PSA+         + L+ +S L+ N  +       ++ + +   I    +  P   G  V
Sbjct: 233 PSALQ--------QSLVSISFLIINSIVNSYGVVASAAYGIANKINSFAFLPPSAIGQAV 284

Query: 114 STRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLA 173
           ST V+  +GAG  + AK  +   II++    + + +++ F    L    +S   ++   A
Sbjct: 285 STFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGA 344

Query: 174 DMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGK 233
           + +    +  I+  +  V +G+ RG G  K    +++   +LV IP+A +L+ +  L   
Sbjct: 345 EYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGLF 404

Query: 234 GLLIGLATGSFVQAALLALKIVFTDW 259
           G+ + +   + + A +  +      W
Sbjct: 405 GIWLAMPISNILSAIICIIYYRKGRW 430

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 7/235 (2%)

Query: 1   MFKIKLGSNGAALAVGLSYWFN-VLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSV 59
           +F + LG  GAALA  ++   + +LLL ++ +  S  + +   F +     IKE +    
Sbjct: 175 IFVLGLGIAGAALATVIAQLISLLLLLLYFFRGKSLLKLSLLRFKLS-LKIIKEILALGF 233

Query: 60  PSAVMVCFEWWSYEVLILLSGLLPNPKLEASV--FSLCFTITYLHYFIPYGFGSTVSTRV 117
           PS +M   +  S  V I+L+  L     +  V  F +   I    +    G    +   +
Sbjct: 234 PSFLM---QLSSSVVTIVLNLTLLGYGGDIGVAAFGIVTRILTFLFLPLIGLSQGLQPII 290

Query: 118 SNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 177
               GAGN    K A+   +I+A    + + ++LL     +    +    ++   A ++ 
Sbjct: 291 GYNYGAGNYDRVKQALKLALIVALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILR 350

Query: 178 FICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKG 232
              L+  +  +  VLSG  +  G  K  A ++L    L  IP+  +L  +F L G
Sbjct: 351 IFLLAFPLAGINIVLSGYFQAIGKAKRAALLSLLRQGLFLIPLLLILPRLFGLDG 405

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 18/259 (6%)

Query: 5   KLGSNGAALA------VGLSYWFNVLLLG-FYIKYSSECEKTRASFSIDVFSSIKEFIRF 57
            +G  GAA+A      +G+ Y    L  G   I+        R    +D ++ IK+ I+ 
Sbjct: 192 AMGVTGAAIATTIGRSIGVLYQLYHLFKGKGRIQIR------RRHLKLD-WAIIKKIIKI 244

Query: 58  SVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRV 117
           +V   +       S+  L+ +     +  L  + +++   I        +G  +  +T V
Sbjct: 245 AVGGILQFLIASSSWIFLVRIIAEFGSTAL--AGYTIAIRIIMFALLPAWGLSNAAATLV 302

Query: 118 SNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVP 177
              LGAG P  A+ +V          +  VS+V       L    ++   ++    + + 
Sbjct: 303 GQNLGAGQPDRAEKSVWRAGKYNMVFLGIVSLVFFLFAEPLVSFFTTDPEVIAIAVEALR 362

Query: 178 FICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLI 237
            I L  I      VLS    G+G  K    +NL  ++L  IP+A +LA    L  KG+ I
Sbjct: 363 IISLGYIFYGYGMVLSQAFNGAGDTKTPTLINLVGFWLFQIPLAYLLARHLNLGPKGVFI 422

Query: 238 GLATGSFVQAALLALKIVF 256
            +     V  A+ A+ I+F
Sbjct: 423 AIPIAETV-LAIAAI-ILF 439

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 41/250 (16%), Positives = 97/250 (38%), Gaps = 10/250 (4%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAV- 63
           KLG  G A++  +S    ++LL   +    +               +K+ ++  +PSA  
Sbjct: 181 KLGVAGVAISTVISRAVGLVLLFILLFRKLKIRFRLKDLRPFPKKLLKKILKIGLPSAGE 240

Query: 64  MVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGA 123
            +    ++    ++ + +        +  +    I+   +      G      V + +GA
Sbjct: 241 ELS---YNLSQTVITAFIARLGTAALAARTYASNISMFVFLFSLAIGQATQIIVGHLVGA 297

Query: 124 GNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSI 183
           G+   A   V   + +     + V+++L   R  +    +    I   +A     + +SI
Sbjct: 298 GDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEI---IALGKTLLLISI 354

Query: 184 IMD---SLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA 240
           +++   +   VL G  R +G  +    + + + + + +P+A +L  V  L   G+ I  A
Sbjct: 355 LLEPGRAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLGLLGVWIAFA 414

Query: 241 TGSFVQAALL 250
              +V+  ++
Sbjct: 415 ADEWVRGIIM 424

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 13/255 (5%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDV-----FSSIKEFIRFSV 59
           +LG  GAA+A  ++   NVL L   +    + +K     S            K  I+  +
Sbjct: 179 RLGIIGAAIATTIA---NVLNLIILVYLCRKIKKLTFKLSNTKVLKANIRPYKFTIKLGL 235

Query: 60  PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSN 119
           P  +      W+   L ++  L    +L   +++L F I  +     YG+ S   T V  
Sbjct: 236 P--LGGEEFLWNIGNLAVIRILNRIGELALGIYTLVFGIENIVLMPMYGYSSAALTLVGE 293

Query: 120 ELGAGNPKAA-KMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPF 178
            +G  + K A ++    + +     +    + L F   IL    ++   +++     + F
Sbjct: 294 SIGKKDLKEALRIGNICLGLGLLIYIAAAIVFLAFPYKILSL-FTNDPELINYSIPYLIF 352

Query: 179 ICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIG 238
           I + +   S+  V     R  G  K   +  +    +V + +A +L FVF+L   G+ I 
Sbjct: 353 IIIILFFKSINIVYGFAIRAIGDTKWMLYTQIIGTIIV-VSVALLLIFVFKLGLAGVYIT 411

Query: 239 LATGSFVQAALLALK 253
           L     ++A +  LK
Sbjct: 412 LFIDEIIRAIINFLK 426

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 7/209 (3%)

Query: 49  SSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYG 108
           ++++E  R  +P       E   +    L  G L + +L A   +L   I  + + +P G
Sbjct: 233 AALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIAL--QIVSVAFMVPVG 290

Query: 109 FGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIV-LLFCRHILGYALS---- 163
               V+ RV    GAG    A+ A    I   A  M+  + +  L    I+G  L     
Sbjct: 291 LSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDP 350

Query: 164 SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAV 223
           +   IV     ++       + D  Q +  G  RG    +    + L  Y+LVG P+A +
Sbjct: 351 AFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWL 410

Query: 224 LAFVFQLKGKGLLIGLATGSFVQAALLAL 252
           LAF       G+  GLA G    A  L L
Sbjct: 411 LAFTLGWGAVGVWWGLALGLACAAVALTL 439

Length = 464

>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 33/125 (26%), Positives = 54/125 (43%)

Query: 88  EASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTV 147
           E +  S  F +      +  G G   S  +S  +GAG+   AK      +IL+    V V
Sbjct: 43  ELAAISFTFPVVLFLNSLTIGLGIGASAVISRAIGAGDRNKAKRLATDSLILSLLLSVIV 102

Query: 148 SIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAF 207
           S++ LF    L   L +S  I+  + + +    L ++   L  V + + R +G  K  + 
Sbjct: 103 SLLGLFTIPPLFSLLGASGEILPLIVEYMAIWYLGLVFLVLPMVGNAIIRATGDTKRPSL 162

Query: 208 VNLGA 212
           V LGA
Sbjct: 163 VMLGA 167

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 51/258 (19%), Positives = 105/258 (40%), Gaps = 20/258 (7%)

Query: 1   MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDV----FSSIKEFIR 56
           +F   +G  GAALA  L+   ++L    Y+ Y     K+  +  I +     S I E +R
Sbjct: 181 IFVFDMGVKGAALATVLAQAISLL----YLLYVFLIGKSNVTIHIKLSNISSSVIVEILR 236

Query: 57  FSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTR 116
             +P  ++      S   LI    ++    +  + F+L   +        +   S + T 
Sbjct: 237 VGLPQMLLQLIS--SISFLIYNRIIIDIDPVAMTAFTLVGRLDQFILIPIFAISSALLTI 294

Query: 117 VSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILG----YALSSSENIVHRL 172
                G GN       +   +IL    +V V +++L   ++L     ++L ++   V   
Sbjct: 295 AGQNWGRGNYDRMLQILMTAVILG---IVVVLVLVLG--YVLVAPWLFSLFTTVPEVVAY 349

Query: 173 ADM-VPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLK 231
           A + V  + L++   ++  +++   +  G       + L  +  + +P+  +LA+VF   
Sbjct: 350 AVLQVRTMALALPFVAISILVTEFFQAIGKAWPSLLLTLIRHVFLSVPVVYLLAYVFGKG 409

Query: 232 GKGLLIGLATGSFVQAAL 249
             G+  G+ + +F  A L
Sbjct: 410 ITGVYFGIVSANFFTALL 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.97
PRK00187	464	multidrug efflux protein NorA; Provisional	99.96
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.96
PRK10189	478	MATE family multidrug exporter; Provisional	99.96
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.95
PRK01766	456	multidrug efflux protein; Reviewed	99.95
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.95
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.93
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.93
PRK15099	416	O-antigen translocase; Provisional	99.91
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.9
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.88
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.88
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.86
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.85
PRK10459	492	colanic acid exporter; Provisional	99.75
COG2244	480	RfbX Membrane protein involved in the export of O-	99.71
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.7
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.65
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.54
PRK15099	416	O-antigen translocase; Provisional	99.48
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.25
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.94
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.61
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.47
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.37
PRK10459	492	colanic acid exporter; Provisional	98.32
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.31
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.28
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.24
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.12
COG2244	480	RfbX Membrane protein involved in the export of O-	97.88
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.46
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	92.07
COG4267	467	Predicted membrane protein [Function unknown]	89.47
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	88.04
PF04505	82	Dispanin: Interferon-induced transmembrane protein	82.63

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=9.6e-40  Score=291.24  Aligned_cols=259  Identities=26%  Similarity=0.401  Sum_probs=242.6

Q ss_pred             cC-CCcchhHHHHHHHHHHHHHHHHHHHhccccc-hhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252            4 IK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSEC-EKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL   81 (285)
Q Consensus         4 ~~-~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      ++ ||+.|||+||+++++++++++++++.++++. .....+..+.+++.+|+++++|+|..++++.+...+...+.++++
T Consensus       191 ~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~  270 (455)
T COG0534         191 FGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVAR  270 (455)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            45 9999999999999999999999999887652 222233334678999999999999999999999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252           82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA  161 (285)
Q Consensus        82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  161 (285)
                      +|  ++++|+|+++.++.++.++++.|++++.+++++|++|+||+|++++..+.++.+++++++..+++++++++++.++
T Consensus       271 ~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~l  348 (455)
T COG0534         271 LG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISL  348 (455)
T ss_pred             cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99  6799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHH
Q 023252          162 LSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT  241 (285)
Q Consensus       162 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~  241 (285)
                      |++|+|+.+.+..++++..+.+++++++.+..+.+||.||++.++++++.+.|++.+|+.|++...+ +|..|+|+++..
T Consensus       349 F~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~  427 (455)
T COG0534         349 FTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPL  427 (455)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998877 999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHH
Q 023252          242 GSFVQAALLALKIVFTDWGKQASK  265 (285)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~  265 (285)
                      ++.+..+...+++++.+|+++..+
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~  451 (455)
T COG0534         428 SLILRAILLLLRLRRGRWRRKAVA  451 (455)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhh
Confidence            999999999999999888876553

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=8.4e-38  Score=280.96  Aligned_cols=257  Identities=14%  Similarity=0.158  Sum_probs=235.4

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHhcccc--chhcccC-CCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252            4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSE--CEKTRAS-FSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG   80 (285)
Q Consensus         4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~   80 (285)
                      ++||+.|+++||.+++++.+++..++++++++  .+.++++ +.+.+++.+|+++++|.|..++.........+.+.+++
T Consensus       208 ~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~  287 (478)
T PRK10189        208 QGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVA  287 (478)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999998887776654322  2222222 12235789999999999999999999999998888899


Q ss_pred             cCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252           81 LLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY  160 (285)
Q Consensus        81 ~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  160 (285)
                      ++|  +.++|+++++.++..+.+++..|+++|.++++||++|+||++|+|+..+.+..++++.++.++++++++++++.+
T Consensus       288 ~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~  365 (478)
T PRK10189        288 GMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLAS  365 (478)
T ss_pred             HcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999  669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHH
Q 023252          161 ALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA  240 (285)
Q Consensus       161 lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~  240 (285)
                      +|++|+|+.+.+..++++.++..++++++.+..+.+||.||++.++++++.+.|++.+|+.|++....++|..|+|++..
T Consensus       366 lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~  445 (478)
T PRK10189        366 FYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMF  445 (478)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHH
Q 023252          241 TGSFVQAALLALKIVFTDWGKQ  262 (285)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~  262 (285)
                      +++.+.+++..+++++++|+++
T Consensus       446 ~~~~~~~~~~~~r~~~~~W~~~  467 (478)
T PRK10189        446 LDWAVRGVLFYWRMVSGRWLWK  467 (478)
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            9999999999999999999873

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=7.6e-36  Score=267.97  Aligned_cols=252  Identities=23%  Similarity=0.302  Sum_probs=226.5

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHhccccch-hc-ccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252            4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECE-KT-RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL   81 (285)
Q Consensus         4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      ++||+.|+++||.+++....+.+++|++++++.+ .+ +++..+.+++.+|+++++++|.+++++.+...+.+++.++++
T Consensus       186 p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~  265 (464)
T PRK00187        186 PKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGA  265 (464)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999988887777776543222 11 122223567889999999999999999999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252           82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA  161 (285)
Q Consensus        82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  161 (285)
                      +|  ++++|++++++++..+.+.+..|++++..+++||++|+||+|++++..+.++.++++.+++.+++++++++++.++
T Consensus       266 ~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~  343 (464)
T PRK00187        266 LG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGL  343 (464)
T ss_pred             cC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99  6699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC--ch---HHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Q 023252          162 LSS--SE---NIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLL  236 (285)
Q Consensus       162 f~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~  236 (285)
                      |++  |+   |+.+.+..++++.+++.++++++.++.+++||.||++.++++++.+.|++++|+.|++.+.+++|+.|+|
T Consensus       344 ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw  423 (464)
T PRK00187        344 FLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVW  423 (464)
T ss_pred             HcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeH
Confidence            963  44   7889999999999999999999999999999999999999999999889999999999998889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 023252          237 IGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       237 ~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      +++.+++.+..+....+++++
T Consensus       424 ~~~~i~~~~~~~~~~~~~~~~  444 (464)
T PRK00187        424 WGLALGLACAAVALTLAFEWK  444 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988776666443

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=3.3e-35  Score=264.00  Aligned_cols=256  Identities=22%  Similarity=0.382  Sum_probs=234.0

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHhccccch--hcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252            4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECE--KTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL   81 (285)
Q Consensus         4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      +++|+.|+++||.+++++..++..++++++++.+  +.+.++.+.+++.+|+++++++|..++++.+...+.+++.++++
T Consensus       189 ~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~  268 (456)
T PRK01766        189 PELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSP  268 (456)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999888887654322  11222223457789999999999999999999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252           82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA  161 (285)
Q Consensus        82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  161 (285)
                      +|  ++++|+++++.++.++...++.|++.+.++.+||++|+||++++++..+.++.+++.++++.+++++.+++++.++
T Consensus       269 ~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  346 (456)
T PRK01766        269 LG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALL  346 (456)
T ss_pred             cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99  6689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHH
Q 023252          162 LSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLAT  241 (285)
Q Consensus       162 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~  241 (285)
                      |++|+|+.+.+..++++..+..++.+++.+..+++||.||++.++++++.+.|++++|..+++...+++|..|+|+++.+
T Consensus       347 f~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~  426 (456)
T PRK01766        347 YTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLII  426 (456)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988999999999998888999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCHHH
Q 023252          242 GSFVQAALLALKIVFTDWGK  261 (285)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~  261 (285)
                      ++++.+++..+++++.+|+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~  446 (456)
T PRK01766        427 GLTAAAILLLLRLRKLQRQP  446 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999888887766553

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=1.8e-34  Score=258.54  Aligned_cols=251  Identities=14%  Similarity=0.116  Sum_probs=223.2

Q ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252            2 FKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL   81 (285)
Q Consensus         2 ~~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      +.++||+.|+++||.+++++.+++.+++++++++..+...+..+.+++.+|+++++|.|..+++........+.+.+.++
T Consensus       184 ~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~  263 (453)
T PRK09575        184 GWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFME  263 (453)
T ss_pred             HhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999988877654432211112223467889999999999999999999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252           82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA  161 (285)
Q Consensus        82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  161 (285)
                      +|+ +.++|+++++.++..+...+..|++++..+++||++|+||+||+++..+.++.+++..+++.+++++++++++.++
T Consensus       264 ~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~l  342 (453)
T PRK09575        264 YGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIAL  342 (453)
T ss_pred             hCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            984 3579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC-chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHH
Q 023252          162 LSS-SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA  240 (285)
Q Consensus       162 f~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~  240 (285)
                      |++ |||+.+.+..|+++.+++.++++++.+..+++||.||++.+++.++.+ +++++|..|++...  +|..|+|+++.
T Consensus       343 f~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~  419 (453)
T PRK09575        343 FNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMP  419 (453)
T ss_pred             HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHH
Confidence            995 789999999999999999999999999999999999999999999887 67899999998754  79999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 023252          241 TGSFVQAALLALKIVF  256 (285)
Q Consensus       241 ~~~~~~~~~~~~~~~~  256 (285)
                      +++.+.+++..+++++
T Consensus       420 ~~~~~~~~~~~~~~~~  435 (453)
T PRK09575        420 LSNIALSLVVAPMLWR  435 (453)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988877666554

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=245.44  Aligned_cols=250  Identities=13%  Similarity=0.110  Sum_probs=206.9

Q ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHH-HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252            2 FKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDV-FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG   80 (285)
Q Consensus         2 ~~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~   80 (285)
                      ++++||+.|+++||.+++++.+++..++++++++.++...+..+++ ++.+|++++++.|..+++..+...+.+.+.+++
T Consensus       181 ~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~  260 (441)
T PRK10367        181 MGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGA  260 (441)
T ss_pred             HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999888777765322111111111122 357899999999999999999999999999999


Q ss_pred             cCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252           81 LLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY  160 (285)
Q Consensus        81 ~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  160 (285)
                      ++|  +.++|+|+++.++.++.+++..|+++|.++++||++|+||+||+|+..+.+++++++++.+.+++++++++++.+
T Consensus       261 ~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  338 (441)
T PRK10367        261 RLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIA  338 (441)
T ss_pred             hcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999  669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccC---cchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhH
Q 023252          161 ALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSG---WQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLI  237 (285)
Q Consensus       161 lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~  237 (285)
                      +|++|+|+.+.+..++++.++..+...+.....++++|.+   |++.++++++.+.|+..++.       +++|..|+|+
T Consensus       339 lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~  411 (441)
T PRK10367        339 LLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWL  411 (441)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHH
Confidence            9999999999999999999876443334444444455555   59999999999866422222       2479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHH
Q 023252          238 GLATGSFVQAALLALKIVFTDWGK  261 (285)
Q Consensus       238 a~~~~~~~~~~~~~~~~~~~~~~~  261 (285)
                      ++.+++.+.+++..++++++ |+|
T Consensus       412 a~~~~~~~~~i~~~~~~~~~-~~~  434 (441)
T PRK10367        412 ALTVFLALRGLSLAAIWRRH-WRN  434 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-Hhc
Confidence            99999999999987766554 743

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.97  E-value=5.6e-28  Score=215.72  Aligned_cols=210  Identities=23%  Similarity=0.279  Sum_probs=201.9

Q ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCCh
Q 023252           47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP  126 (285)
Q Consensus        47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~  126 (285)
                      .++..|+++++++|..++++.+.....+|++++|+++  ++++|+.++++++..+...+..+++.+..+.+||++|+||+
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~   89 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR   89 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence            4678999999999999999999999999999999999  77999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252          127 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA  206 (285)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  206 (285)
                      +++++..++++.++++.+++..++.+.+++++.++++.++|+.+.+.+|+++..++.|+..++.+..+++|+.||++.++
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m  169 (455)
T COG0534          90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM  169 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hc-CCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 023252          207 FVNLGAYYLVGIPIAAVLAFV-FQ-LKGKGLLIGLATGSFVQAALLALKIVFTDW  259 (285)
Q Consensus       207 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~  259 (285)
                      ++++++ .+.|+.++|++++. ++ +|..|+.+|+++++.+.++...+++.+++.
T Consensus       170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~  223 (455)
T COG0534         170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR  223 (455)
T ss_pred             HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            999999 89999999999998 57 999999999999999999998888877653

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.96  E-value=1.2e-27  Score=215.06  Aligned_cols=207  Identities=17%  Similarity=0.032  Sum_probs=191.5

Q ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCCh
Q 023252           47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP  126 (285)
Q Consensus        47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~  126 (285)
                      ++++.|+++++++|.+++++.+.+...+|+.+++++|  ++++|+++++.++.++...+..|++++..+++||++|+||+
T Consensus         5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~   82 (464)
T PRK00187          5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI   82 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            4778999999999999999999999999999999999  66999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252          127 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA  206 (285)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  206 (285)
                      +|+++..+.++.++.+++++..++.+ +.+++.++|+.|+|+.+.+.+|++++.++.++..+...+++++|+.||++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  161 (464)
T PRK00187         83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM  161 (464)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877765 67899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252          207 FVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       207 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      +.++++ .+++++++|++++.    +++|..|+++|+++++.+..+.+.++++++
T Consensus       162 ~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~  215 (464)
T PRK00187        162 VISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH  215 (464)
T ss_pred             HHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998 78899999998864    358999999999999888877665555543

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.96  E-value=2.1e-27  Score=211.76  Aligned_cols=207  Identities=14%  Similarity=0.107  Sum_probs=194.8

Q ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChH
Q 023252           48 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK  127 (285)
Q Consensus        48 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~  127 (285)
                      +++.|+++++++|..++++.......+|+.+++++|. +.++|+.+++.++.++...+..+++.+..+++||++|+||+|
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~   83 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ   83 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            5668999999999999999999999999999999942 558999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHH
Q 023252          128 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAF  207 (285)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  207 (285)
                      ++++..++++.++++.+++..++...+.+++..+++.|+|+.+.+.+|++++.++.|+..+..++.+++|+.||++.+++
T Consensus        84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~  163 (441)
T PRK10367         84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI  163 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence            99999999999999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          208 VNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       208 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      .++++ .+++++++|++.+.+++|..|+++|+.+++.+.+++..+++++
T Consensus       164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 7889999999999889999999999999999988877665554

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.96  E-value=4.5e-27  Score=211.60  Aligned_cols=206  Identities=16%  Similarity=0.166  Sum_probs=193.1

Q ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChH
Q 023252           48 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPK  127 (285)
Q Consensus        48 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~  127 (285)
                      -+.+|+++++++|..++++.......+++.+++++|  ++++|++++++++.++...+..|++++..+++||++|+||+|
T Consensus        25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~  102 (478)
T PRK10189         25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR  102 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            445899999999999999999999999999999999  679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252          128 AAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS--SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG  205 (285)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  205 (285)
                      ++++..+.++.++++++++.+++.+++++++.++|+  .|+|+.+.+.+|+++..++.++..+..++.+++||.||++.+
T Consensus       103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~  182 (478)
T PRK10189        103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP  182 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence            999999999999999999999999999999999995  699999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          206 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       206 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      +++++.+ +++++++++++++.    +++|..|+++|+.+++++..++..+.+.+
T Consensus       183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~  236 (478)
T PRK10189        183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI  236 (478)
T ss_pred             HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987 88999999998864    47999999999999999988876655543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.95  E-value=1.8e-26  Score=206.99  Aligned_cols=208  Identities=13%  Similarity=0.068  Sum_probs=196.5

Q ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC-CCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCC
Q 023252           47 VFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLL-PNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN  125 (285)
Q Consensus        47 ~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~  125 (285)
                      +++..|+++++++|..++++...+...+|+.+++++ |  ++++++++++.++.++...+..+++.+..+++||++|+||
T Consensus         7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~   84 (453)
T PRK09575          7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGD   84 (453)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence            356789999999999999999999999999999996 8  6699999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252          126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG  205 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  205 (285)
                      +|++++..+.++.++++.+++.+++.+++++++.++|+.|+++.+.+.+|+++..++.++..+.....+++|+.||++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~  164 (453)
T PRK09575         85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA  164 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252          206 AFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       206 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      ++.++.+ .++++++++++.+.+++|..|+++++.+++.+.+++..++++++
T Consensus       165 ~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~  215 (453)
T PRK09575        165 TGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS  215 (453)
T ss_pred             HHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999998 78999999999988889999999999999999998876666543

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.95  E-value=8.3e-26  Score=203.13  Aligned_cols=210  Identities=15%  Similarity=0.108  Sum_probs=195.8

Q ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCC
Q 023252           46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN  125 (285)
Q Consensus        46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~  125 (285)
                      ..++.+|+++++++|..++++..++...+|+.+++++|  ++++++++++.++..+...+..|++.+..+.+||++|+||
T Consensus         6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~   83 (456)
T PRK01766          6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR   83 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45788999999999999999999999999999999999  6689999999999888888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252          126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG  205 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  205 (285)
                      ++++++..+.++.++++.+++++++++++++++..+++.|+++.+.+.+|+++.+++.++..+..++.+++|+.||++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  163 (456)
T PRK01766         84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT  163 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 023252          206 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFTD  258 (285)
Q Consensus       206 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  258 (285)
                      ++.++.+ .++++++++++++.    +++|..|+++++.+++++..+...++.++++
T Consensus       164 ~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~  219 (456)
T PRK01766        164 MVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR  219 (456)
T ss_pred             HHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            9999998 68899999988753    4689999999999999999998877766543

>TIGR01695 mviN integral membrane protein MviN

Probab=99.95  E-value=1.8e-25  Score=203.31  Aligned_cols=247  Identities=17%  Similarity=0.106  Sum_probs=216.5

Q ss_pred             ccCCCcchhH--HHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252            3 KIKLGSNGAA--LAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG   80 (285)
Q Consensus         3 ~~~~Gv~Gaa--~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~   80 (285)
                      ..++|+.|++  +|+++++.++.++..+++++++. +. +.+. +.+++.+|++++.+.|..++++..++...++..+.+
T Consensus       175 ~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~  251 (502)
T TIGR01695       175 DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LL-KPRF-NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALAS  251 (502)
T ss_pred             HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cc-cCcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999  99999999999888777765431 11 1111 124677899999999999999999999999998888


Q ss_pred             cCCCccchhhHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 023252           81 LLPNPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILG  159 (285)
Q Consensus        81 ~~g~~~~~~aa~~~~~~i~~~~~~-~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  159 (285)
                      .+|  +.++++|+.+.++.+++.. +..+++++..|.+|+++|+||++++++..++++++...++++..+.++++++++.
T Consensus       252 ~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii  329 (502)
T TIGR01695       252 FLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIV  329 (502)
T ss_pred             cCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888  5589999999999988765 5789999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC----chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Q 023252          160 YALSS----SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGL  235 (285)
Q Consensus       160 ~lf~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~  235 (285)
                      ++|.+    |+|..+.+..+++++++..++.+++.++...+++.||++.+++.++.+ .++++++++++...  +|..|+
T Consensus       330 ~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~~--~G~~G~  406 (502)
T TIGR01695       330 SLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIFP--LGLVGI  406 (502)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHHH--HhhhHH
Confidence            99875    567788899999999999999999999999999999999999999998 67899999988654  789999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhc
Q 023252          236 LIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      |+++.+++.+..+...++.+|+
T Consensus       407 ~~a~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       407 ALATSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988887776654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.93  E-value=1e-25  Score=200.18  Aligned_cols=273  Identities=46%  Similarity=0.766  Sum_probs=255.3

Q ss_pred             CcccCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 023252            1 MFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG   80 (285)
Q Consensus         1 i~~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~   80 (285)
                      ++.+++|+.|++++..++++....++..|..... ....|..+..+ ++.+++.++++.|..++...+.+.+.+.....|
T Consensus       198 v~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G  275 (473)
T KOG1347|consen  198 VSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAG  275 (473)
T ss_pred             hhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999988665 66677776655 999999999999999999999999999999999


Q ss_pred             cCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023252           81 LLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGY  160 (285)
Q Consensus        81 ~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  160 (285)
                      .+++++.++++.+++.++....++++.+++.+.++++++.+|++|++++|.....+...++..+...+..++.+++.+..
T Consensus       276 ~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~  355 (473)
T KOG1347|consen  276 LLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQ  355 (473)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHH
Q 023252          161 ALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLA  240 (285)
Q Consensus       161 lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~  240 (285)
                      +|++|+|+.+...+..++.+.+.+.++.+.+..++.+|.|+.+...++++....++++|+..++.+..++|..|.|.++.
T Consensus       356 ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~  435 (473)
T KOG1347|consen  356 IFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGIL  435 (473)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 023252          241 TGSFVQAALLALKIVFTDWGKQASKARERIFEGDS  275 (285)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (285)
                      .+..+..........+.+|++..++++++......
T Consensus       436 ~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~  470 (473)
T KOG1347|consen  436 LGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV  470 (473)
T ss_pred             HHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence            99888888888888889999999988887665443

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.93  E-value=1.3e-23  Score=190.51  Aligned_cols=248  Identities=16%  Similarity=0.166  Sum_probs=205.2

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhc--ccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252            4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKT--RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL   81 (285)
Q Consensus         4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      .++|+.|+++++.+++.+..++..++++++++.+.+  +.+..+.+++.+|++++.++|..++++.......+|+.++++
T Consensus       175 ~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~  254 (488)
T TIGR02900       175 LEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQ  254 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999877776544332211  112223457789999999999999999999999999888765


Q ss_pred             C----CCc-cchhhHH----HHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252           82 L----PNP-KLEASVF----SLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLL  152 (285)
Q Consensus        82 ~----g~~-~~~~aa~----~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (285)
                      .    |.. ..+.+.+    +++.++.+++..+..+++++..|.+++++|+||+++.++..+++++++...+++..+.+.
T Consensus       255 ~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (488)
T TIGR02900       255 RLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILL  334 (488)
T ss_pred             HHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    210 1112222    345567777777889999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 023252          153 FCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKG  232 (285)
Q Consensus       153 ~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~  232 (285)
                      ++++++..+|.++++    +..+++++++..++.+++....+++++.||++.+++.++.+ .++++++++.+...+.+|.
T Consensus       335 ~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~  409 (488)
T TIGR02900       335 VIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINI  409 (488)
T ss_pred             HHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhcccccc
Confidence            999999999876544    56789999999999999999999999999999999999998 6889999988875566899


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHh
Q 023252          233 KGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       233 ~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      .|+++++.+++.+..++..+..+|
T Consensus       410 ~Gaaia~~i~~~~~~~~~~~~~~~  433 (488)
T TIGR02900       410 YGYAITFIITSVLVTILNLAEIKK  433 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877765

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.91  E-value=1e-21  Score=174.70  Aligned_cols=239  Identities=12%  Similarity=0.057  Sum_probs=198.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-cCCCc
Q 023252            7 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSG-LLPNP   85 (285)
Q Consensus         7 Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~-~~g~~   85 (285)
                      |+.|+++||++++.+..+..++++.++++.+.++.++ +.+++.+|+++++|.|..+++....+....++.+++ .+|  
T Consensus       171 Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--  247 (416)
T PRK15099        171 GYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--  247 (416)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence            9999999999999999888777776544322211122 245788999999999999999999999999988885 888  


Q ss_pred             cchhhHHHHHHHHHHH-HHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 023252           86 KLEASVFSLCFTITYL-HYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSS  164 (285)
Q Consensus        86 ~~~~aa~~~~~~i~~~-~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~  164 (285)
                      +++++.|+.+.++.+. ...+..+++++..|.++++   +|++|.++..++........+++.++.++++++++.++|.+
T Consensus       248 ~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g  324 (416)
T PRK15099        248 WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFS  324 (416)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6699999999999774 4788999999999999995   78899999999999999999999999999999999999988


Q ss_pred             chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 023252          165 SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSF  244 (285)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~  244 (285)
                      |+-  +.+.+++++.++..++...+..+...+-..++++......+.. .++++|+++++...  +|..|+++++++++.
T Consensus       325 ~~~--~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~--~G~~G~a~a~~is~~  399 (416)
T PRK15099        325 NKF--TAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL--HGALGAAQAYMATYI  399 (416)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHH
Confidence            652  1256788888888888877777766666777777777777766 78889999998766  899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 023252          245 VQAALLALKIVF  256 (285)
Q Consensus       245 ~~~~~~~~~~~~  256 (285)
                      +..+...+...+
T Consensus       400 ~~~~~~~~~~~~  411 (416)
T PRK15099        400 VYFSLCCGVFLL  411 (416)
T ss_pred             HHHHHHHHHHHH
Confidence            999877655543

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.90  E-value=1.1e-23  Score=163.15  Aligned_cols=162  Identities=20%  Similarity=0.387  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 023252           60 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL  139 (285)
Q Consensus        60 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~  139 (285)
                      |..++++.+.+...+++.+++++|  ++++++++++.++.++...+..|++++..+.+||++|+||++|+++..+.++.+
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~   78 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL   78 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence            889999999999999999999998  669999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 023252          140 AAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIP  219 (285)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  219 (285)
                      +.+++++.+++.+++++++.++|++|+|+.+.+.+|+++..++.++..+..+..+++||.||++.+++.++.+.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  158 (162)
T PF01554_consen   79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP  158 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred             chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997799999


Q ss_pred             HHHH
Q 023252          220 IAAV  223 (285)
Q Consensus       220 ~~~~  223 (285)
                      ++|+
T Consensus       159 l~yl  162 (162)
T PF01554_consen  159 LAYL  162 (162)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9885

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.88  E-value=1.2e-20  Score=163.50  Aligned_cols=194  Identities=21%  Similarity=0.225  Sum_probs=180.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 023252           60 PSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIIL  139 (285)
Q Consensus        60 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~  139 (285)
                      |.+++++...+...+++.+++++|  ++++++++.+.++..+...+..|++++..+.+++++|++|+|++++..+.++.+
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~   78 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL   78 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            788899999999999999999999  668999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHH
Q 023252          140 AAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIP  219 (285)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  219 (285)
                      ..+.+++.+++.+++++++.++++.|++..+.+..+++++.++.++.+++..+.+++|+.||.+.++..++.+ .+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~  157 (342)
T TIGR00797        79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII  157 (342)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence            9999999999999999999999988888889999999999999999999999999999999999999999988 678889


Q ss_pred             HHHHHHH-Hhc-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          220 IAAVLAF-VFQ-LKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       220 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      .++++.. .++ +|..|+++++.+++.+..+...++.+|
T Consensus       158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888876 566 789999999999999998887766654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.88  E-value=1.1e-19  Score=162.59  Aligned_cols=242  Identities=14%  Similarity=0.115  Sum_probs=214.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 023252            8 SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKL   87 (285)
Q Consensus         8 v~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~   87 (285)
                      +.+.++|..++.+++.++.+...++.+...+...+   ...+..|++++...|..+.....++...++..+.+.++++  
T Consensus       157 i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--  231 (451)
T PF03023_consen  157 IYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFD---WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--  231 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--
Confidence            78899999999999999988887654422111111   2255689999999999999999999999999999999955  


Q ss_pred             hhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Q 023252           88 EASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS---  163 (285)
Q Consensus        88 ~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~---  163 (285)
                      .+++++.+.++.+++. .+..+++++..|..|+...+||.++.++..+++++....+.+|.++.++.+++++.+++.   
T Consensus       232 ~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG  311 (451)
T PF03023_consen  232 SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERG  311 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccC
Confidence            9999999999999987 466799999999999999999999999999999999999999999999999999988875   


Q ss_pred             -CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 023252          164 -SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG  242 (285)
Q Consensus       164 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~  242 (285)
                       -|+|..+....++++++++.++.+++..+...+.+.+|+|.++.+++.+ .++++.+++++...  +|..|+.+++.++
T Consensus       312 ~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~Glala~sl~  388 (451)
T PF03023_consen  312 AFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVAGLALATSLS  388 (451)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence             3677788999999999999999999999999999999999999999998 78899998777665  8999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 023252          243 SFVQAALLALKIVFT  257 (285)
Q Consensus       243 ~~~~~~~~~~~~~~~  257 (285)
                      .++.+++..+..+|+
T Consensus       389 ~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  389 AIISALLLYILLRRR  403 (451)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887777665

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.86  E-value=2.2e-20  Score=161.81  Aligned_cols=174  Identities=27%  Similarity=0.452  Sum_probs=155.1

Q ss_pred             cC-CCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Q 023252            4 IK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLL   82 (285)
Q Consensus         4 ~~-~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~   82 (285)
                      ++ +|+.|+++|+.+++++.+++..++.+++++.+.++++..+.+++.+|++++++.|.++.++...+...+++.+.+++
T Consensus       167 ~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~  246 (342)
T TIGR00797       167 FGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARL  246 (342)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHc
Confidence            45 78999999999999999998888776544333332232334578899999999999999999999999999999999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 023252           83 PNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYAL  162 (285)
Q Consensus        83 g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf  162 (285)
                      |  +.++++|+++.++.++...++.+++++..|.+++++|+||++++++..++++++.++.+++..+.++++++++.++|
T Consensus       247 g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~  324 (342)
T TIGR00797       247 G--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLF  324 (342)
T ss_pred             C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8  56999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHhhHHH
Q 023252          163 SSSENIVHRLADMVPFI  179 (285)
Q Consensus       163 ~~~~~~~~~~~~~l~~~  179 (285)
                      ++||++.+.+..++++.
T Consensus       325 ~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       325 TNDPEVLELAAIYLIFV  341 (342)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999888764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.85  E-value=1.8e-18  Score=153.51  Aligned_cols=242  Identities=16%  Similarity=0.083  Sum_probs=214.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 023252            8 SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKL   87 (285)
Q Consensus         8 v~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~   87 (285)
                      ..+.++|++++-+.+.++.+..+++.+...+...++   +.+..|++++...|..+.....++...+++.+.+.+.++  
T Consensus       191 ~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~---~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--  265 (518)
T COG0728         191 LLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF---KDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--  265 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence            457899999999999999999998765322222222   237889999999999999999999999999999999855  


Q ss_pred             hhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Q 023252           88 EASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALS---  163 (285)
Q Consensus        88 ~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~---  163 (285)
                      +++.++.++++.+++. .+..++++...|..|++..++|.++.++..+++++++++.++|.++.+.++++++.+++.   
T Consensus       266 sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG  345 (518)
T COG0728         266 SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERG  345 (518)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8999999999999998 677899999999999999999999999999999999999999999999999999988874   


Q ss_pred             -CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 023252          164 -SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG  242 (285)
Q Consensus       164 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~  242 (285)
                       -++++.....+.+..++.+.++....-+....+.+.+|+|.|+.+.+.+ .++++.+++.+...  ++..|+..+..++
T Consensus       346 ~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l~~~--~~~~giala~s~a  422 (518)
T COG0728         346 AFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLLIPP--LGHVGLALATSLA  422 (518)
T ss_pred             CCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHHHhh--ccchHHHHHHHHH
Confidence             2577778899999999999999999999999999999999999999999 88999999766555  7888899999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 023252          243 SFVQAALLALKIVFT  257 (285)
Q Consensus       243 ~~~~~~~~~~~~~~~  257 (285)
                      .++++.+.++..+|+
T Consensus       423 ~~~~~~ll~~~l~k~  437 (518)
T COG0728         423 AWVNALLLYYLLRKR  437 (518)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            989888877776654

>PRK10459 colanic acid exporter; Provisional

Probab=99.75  E-value=9.3e-16  Score=139.38  Aligned_cols=239  Identities=10%  Similarity=0.102  Sum_probs=193.4

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 023252            4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLP   83 (285)
Q Consensus         4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g   83 (285)
                      .+.|+.+..++++++..+..+...+...+  +.+++.    +.+++..|++++.+.|....++...+...+|..+++++-
T Consensus       165 ~~~g~~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~l  238 (492)
T PRK10459        165 FWPGALAAILGYLVNSSVRTLLFGYFGRK--IYRPAL----HFSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRIL  238 (492)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHHHHHhcc--cCCccc----eecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhh
Confidence            56788899999999988876654333222  112111    123567899999999999999999999999998877764


Q ss_pred             CccchhhHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 023252           84 NPKLEASVFSLCFTITYLHYF-IPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYAL  162 (285)
Q Consensus        84 ~~~~~~aa~~~~~~i~~~~~~-~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf  162 (285)
                      . +.+++.|+.+.++.+++.. +...+++...|..++.  ++|.++.++..++...+....++|..+.+.++++++..++
T Consensus       239 g-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll  315 (492)
T PRK10459        239 G-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLV  315 (492)
T ss_pred             c-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            3 5689999999999887654 4556788889999886  5789999999999999999999999999999999998877


Q ss_pred             cCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHH
Q 023252          163 SSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATG  242 (285)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~  242 (285)
                      .+++  .+.+...++++++..++..+.......+++.||++.++..++.. .++.+|..+.+...  +|..|+.+++.++
T Consensus       316 ~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~~--~G~~g~a~a~~i~  390 (492)
T PRK10459        316 FGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQL--AGLIGVALGFLLV  390 (492)
T ss_pred             cChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHhh--ccHHHHHHHHHHH
Confidence            6644  24577899999999999999999999999999999999999887 67778877666543  7999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023252          243 SFVQAALLALKIVF  256 (285)
Q Consensus       243 ~~~~~~~~~~~~~~  256 (285)
                      +.+......+...|
T Consensus       391 ~~~~~~~~~~~~~~  404 (492)
T PRK10459        391 QIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988877776633

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.71  E-value=6.1e-15  Score=133.63  Aligned_cols=224  Identities=17%  Similarity=0.167  Sum_probs=188.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 023252            8 SNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKL   87 (285)
Q Consensus         8 v~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~   87 (285)
                      ..++.++..++..........+..++++...+ ... +..++..|+.++.+.|..+..+...+...+|+.+++++-. +.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~  247 (480)
T COG2244         171 LGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PA  247 (480)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hh
Confidence            45677777778777777766666422221111 111 1258899999999999999999999999999988887643 56


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchH
Q 023252           88 EASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSEN  167 (285)
Q Consensus        88 ~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~  167 (285)
                      +++.|+.+.++......+..+++.+..|..++...++|.++.++..+++.++....+++..+.+.++++++..++.+++.
T Consensus       248 ~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~  327 (480)
T COG2244         248 QVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY  327 (480)
T ss_pred             HheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998888876544


Q ss_pred             HHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHH
Q 023252          168 IVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGL  239 (285)
Q Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~  239 (285)
                      .  .+...+.+.++..++..+.......+++.|+++..++.+..+ .+.++.++++++..  +|..|+..+.
T Consensus       328 ~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~--~g~~g~~~a~  394 (480)
T COG2244         328 A--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPR--FGLIGAAIAT  394 (480)
T ss_pred             c--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHh--hhhhhHHHHH
Confidence            2  177889999999999999999999999999999999999998 68888888887765  6788888877

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.70  E-value=2.4e-15  Score=134.21  Aligned_cols=206  Identities=16%  Similarity=0.160  Sum_probs=192.3

Q ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHH-HHHHhhhhhhhHHHHHhhhhcCCCh
Q 023252           48 FSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYL-HYFIPYGFGSTVSTRVSNELGAGNP  126 (285)
Q Consensus        48 ~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~-~~~~~~~~~~a~~~~vs~~~G~~~~  126 (285)
                      ..+.|++++++.|..+..........+++.+.+|+|  +.++++.++++...+. .+.+..|+..+..++.+|++|++++
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~  101 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF  101 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence            788999999999999999999999999999999999  5699999999888776 4578899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252          127 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA  206 (285)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  206 (285)
                      +......+++.......+++.+.+ +.+.+++...+++|+++...+..|.++..+..+...........+|++++.....
T Consensus       102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~  180 (473)
T KOG1347|consen  102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL  180 (473)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence            999999999999999999999775 6678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252          207 FVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       207 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      ++..+. .++++++++++.+.+++|..|+..+..++++........++...
T Consensus       181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~  230 (473)
T KOG1347|consen  181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS  230 (473)
T ss_pred             HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence            999998 88999999999999999999999999999999988877666554

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.65  E-value=1.9e-14  Score=130.60  Aligned_cols=196  Identities=15%  Similarity=0.178  Sum_probs=161.8

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCccchhhHHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhhcCCChHHHHHH
Q 023252           55 IRFSVPSAVMVCFEWWSYEVLILLSGL-LPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAAKMA  132 (285)
Q Consensus        55 l~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~aa~~~~~~i~~~~~~~~-~~~~~a~~~~vs~~~G~~~~~~~~~~  132 (285)
                      +|-+.|..+++........+++.++++ +|  +++.++++.+.++..+...+. .|++++....+|+..|++|++++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~   79 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI   79 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence            466889999999999999999988887 58  568999999999988887765 59999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHH
Q 023252          133 VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA  212 (285)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  212 (285)
                      .+.+..+.++.+++..++++++++++...+.+|++.    ..++++..+..++..+.....+.+|+.+|.+..+..++.+
T Consensus        80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~  155 (488)
T TIGR02900        80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE  155 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence            999999999999999999999999998877666653    3467888899999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHH-----HhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252          213 YYLVGIPIAAVLAF-----VFQLKGKGLLIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       213 ~~~~~i~~~~~l~~-----~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                       .++++.....+..     ..+++..|..+++.++..+..+...+.++|+
T Consensus       156 -~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~  204 (488)
T TIGR02900       156 -QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK  204 (488)
T ss_pred             -HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5555544333322     1234567777888888888888765555443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.54  E-value=2e-12  Score=117.83  Aligned_cols=196  Identities=14%  Similarity=0.094  Sum_probs=152.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCccchh-hHHHHHHHHHHHHHHHh--hhhhhhHHHHHhhhhcCCChHHH
Q 023252           54 FIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNPKLEA-SVFSLCFTITYLHYFIP--YGFGSTVSTRVSNELGAGNPKAA  129 (285)
Q Consensus        54 il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-aa~~~~~~i~~~~~~~~--~~~~~a~~~~vs~~~G~~~~~~~  129 (285)
                      .+|-+.-..+.++.......++..++++ +|  +++. ++++.+.++.++...+.  .|++++..+...++.+++  |++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG--~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~   77 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFG--AGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA   77 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence            3566666777888888888899999888 89  4577 79999999987776554  367777777766654333  688


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHhhcccccccc--cCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhH
Q 023252          130 KMAVCAIIILAAAEMV-TVSIVLLFCRHILGYAL--SSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGA  206 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~lf--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  206 (285)
                      ++....++......+. +..++.+++++++..++  +.|++..+.+..|++++.++.++..+..+..+++|+.||.+.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  157 (502)
T TIGR01695        78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS  157 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence            8777776666664444 45677888999999988  44677778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcchhh--HHHHHHHHHHHHHHHHHHHh
Q 023252          207 FVNLGAYYLVGIPIAAVLAFVFQLKGKGLL--IGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       207 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~  256 (285)
                      +.++.. .++.+...  +....++|..|+.  +++.++..+..+...+..+|
T Consensus       158 ~~~i~~-~i~~i~~~--~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  206 (502)
T TIGR01695       158 FSPILF-NIGVILSL--LFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK  206 (502)
T ss_pred             HHHHHH-HHHHHHHH--HHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987 34444432  2334568899988  99999999888877665554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.48  E-value=2.8e-12  Score=114.17  Aligned_cols=191  Identities=14%  Similarity=0.083  Sum_probs=147.9

Q ss_pred             HHHHhhHHHHHHHHHH-HHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhhcCCChHHHHHH
Q 023252           55 IRFSVPSAVMVCFEWW-SYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMA  132 (285)
Q Consensus        55 l~~~~p~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~-~~~~~~a~~~~vs~~~G~~~~~~~~~~  132 (285)
                      .|.+............ .+.........+|  +++.+..+...++..+...+ ..|++++....++++  ++|++++++.
T Consensus         4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~   79 (416)
T PRK15099          4 AKASLWTAASTLVKIGAGLLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV   79 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence            3444444455555553 3334456677778  55888888888888777665 678888888899988  6899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHH
Q 023252          133 VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGA  212 (285)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  212 (285)
                      .+.++.+....+++.+++.+++.+++...+..|++.    ..++.+..+..++..+.....+.+|+.||++.++..++.+
T Consensus        80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~  155 (416)
T PRK15099         80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG  155 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776652    3566677776777788889999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          213 YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       213 ~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                       .++++.+ +++.... .|..|+.+++.+++.+..+...+.+.|
T Consensus       156 -~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        156 -SLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             -HHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6777665 4433332 399999999999999988766555544

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.25  E-value=1.1e-09  Score=98.42  Aligned_cols=174  Identities=14%  Similarity=0.100  Sum_probs=146.8

Q ss_pred             hcCCCccchhhHHHHHHHHHHHHHHHh--hhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023252           80 GLLPNPKLEASVFSLCFTITYLHYFIP--YGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHI  157 (285)
Q Consensus        80 ~~~g~~~~~~aa~~~~~~i~~~~~~~~--~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (285)
                      ..+|. ..+.++|.++.++..++....  .++.++..|..++.. ++|.++.++..+..+.+..+.+++++++.++++++
T Consensus         3 ~~fG~-s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~   80 (451)
T PF03023_consen    3 YFFGA-SAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPP   80 (451)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45665 456789999999999998543  468999999999999 99999999999999999999999999999999999


Q ss_pred             cccccc--CchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCC---c
Q 023252          158 LGYALS--SSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLK---G  232 (285)
Q Consensus       158 i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---~  232 (285)
                      +.+++.  .|++..+.+.+.++++.+..++.++..++.+++|+.+|...+....+.. .+..+...+++..  .+|   .
T Consensus        81 iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~-N~~~I~~~~~~~~--~~~~~~i  157 (451)
T PF03023_consen   81 IVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLF-NLSIILSLLLLSN--SWGQENI  157 (451)
T ss_pred             HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHH-HHHHHHHHHHHHH--hcCchHH
Confidence            999985  4788899999999999999999999999999999999999999988876 3333333333333  355   7


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhcC
Q 023252          233 KGLLIGLATGSFVQAALLALKIVFTD  258 (285)
Q Consensus       233 ~g~~~a~~~~~~~~~~~~~~~~~~~~  258 (285)
                      .++.+|+.++..+..+......+|..
T Consensus       158 ~~la~g~~~g~~~~~l~~l~~~~~~~  183 (451)
T PF03023_consen  158 YALAWGVLIGAIIQFLIQLPYLRRFG  183 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            88999999999999888777776643

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.94  E-value=3.8e-07  Score=81.87  Aligned_cols=201  Identities=14%  Similarity=0.106  Sum_probs=153.0

Q ss_pred             HHHHhhHHHHHHHHH-HHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHh--hhhhhhHHHHHhhhhcCCChHHHHH
Q 023252           55 IRFSVPSAVMVCFEW-WSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIP--YGFGSTVSTRVSNELGAGNPKAAKM  131 (285)
Q Consensus        55 l~~~~p~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~--~~~~~a~~~~vs~~~G~~~~~~~~~  131 (285)
                      +|.+.-..+.++..- .++.=++.+...+|.+ ...++++++.++.+++.-+.  .+++++..|...++..+++.+++++
T Consensus        10 lks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~   88 (518)
T COG0728          10 LKSLIIVSSATLLSRILGFVRDVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARF   88 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHH
Confidence            344444444444444 4444578888999963 56789999999999997543  4588999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccc-ccccC--chHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHH
Q 023252          132 AVCAIIILAAAEMVTVSIVLLFCRHILG-YALSS--SENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFV  208 (285)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  208 (285)
                      ..+...-......+.++++..++++++. .++.+  |++....+....+++.+..++.++.....+++++.++-..+.+.
T Consensus        89 f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~a  168 (518)
T COG0728          89 FSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFA  168 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhh
Confidence            8888887888888888899999999998 55544  34544468888899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252          209 NLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       209 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      -+.- .+..|.....+....+....+..++..++-++..+......+|.
T Consensus       169 Pvl~-Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~  216 (518)
T COG0728         169 PVLL-NVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA  216 (518)
T ss_pred             HHHH-HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7765 33333233333333332466788889999999888887777764

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.61  E-value=5.5e-06  Score=75.67  Aligned_cols=205  Identities=11%  Similarity=-0.001  Sum_probs=158.7

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc--CCCccchhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCCh
Q 023252           50 SIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL--LPNPKLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNP  126 (285)
Q Consensus        50 ~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~  126 (285)
                      .-++++++....+.+.+.-.+.+--+-.++..  +.+ .++.+.|++++++.++.- .+...+-.+.-...++...+++.
T Consensus       251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~  329 (549)
T PF04506_consen  251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS  329 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence            35789999999999999988888888877777  554 467899999999988774 67778999999998888765533


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHh
Q 023252          127 ---------KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVAR  197 (285)
Q Consensus       127 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  197 (285)
                               +++.+.....+++...+++++..+-...++.+++++.++.=....+...+++++...|+.++|.+..++.+
T Consensus       330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~  409 (549)
T PF04506_consen  330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF  409 (549)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence                     45777788888888888888877777788888888754322222357789999999999999999999999


Q ss_pred             ccCcchhhHHHHHHH--HHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          198 GSGWQKIGAFVNLGA--YYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       198 ~~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      +..+.+.....+-.-  ..++.+..+|++... ++|..|..+|..+...++.+....++++
T Consensus       410 s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~  469 (549)
T PF04506_consen  410 SVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR  469 (549)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            998876654443221  134455667777766 7999999999999999998877766654

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.47  E-value=5.1e-05  Score=63.09  Aligned_cols=186  Identities=17%  Similarity=0.199  Sum_probs=115.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHH-HHHHhcCCCccchhhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhhcCCChHHHHHHH
Q 023252           56 RFSVPSAVMVCFEWWSYEVL-ILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAV  133 (285)
Q Consensus        56 ~~~~p~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~-~~~~~~a~~~~vs~~~G~~~~~~~~~~~  133 (285)
                      |-+.-....+........+. ......+|  +++.+.++....+..+...+ ..|+.++..-..+++..+  .++.+...
T Consensus         3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~   78 (273)
T PF01943_consen    3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF   78 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence            33344444444454444444 45555667  66889999999998888765 678999988888887643  44455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHH
Q 023252          134 CAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAY  213 (285)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  213 (285)
                      ........+.+++.........     .+.. ++..   ..+........++.........++|+.++.+.....++.. 
T Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (273)
T PF01943_consen   79 SSVLFLLLIFSLIFLLILLIAS-----FFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS-  148 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5555555544444444333323     3333 3321   1222222222257788888999999999999999988887 


Q ss_pred             HHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          214 YLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       214 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      .+..+.....+.. .+.+..+..++..++..+..+...+..+|
T Consensus       149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (273)
T PF01943_consen  149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR  190 (273)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444333 23348888888888888887777666654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.37  E-value=0.00013  Score=60.05  Aligned_cols=164  Identities=14%  Similarity=0.261  Sum_probs=109.8

Q ss_pred             HHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHH-hhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 023252           72 YEVLILLSGLLPNPKLEASVFSLCFTITYLHYFI-PYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIV  150 (285)
Q Consensus        72 ~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~-~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (285)
                      +.....+...+|  +++.+.|+....+..+...+ ..|+.+....     ..++|+++.++..+.......+.+++..++
T Consensus         5 f~~~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    5 FLFLILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456666677  56889999988888887765 4555555444     334677778887777776666665555444


Q ss_pred             HHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023252          151 LLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQL  230 (285)
Q Consensus       151 ~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~  230 (285)
                      ......    ++ .+++    ...++.+..+..++..........+++.+|.+.....++.. .+..+.....+ ...+.
T Consensus        78 ~~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~  146 (251)
T PF13440_consen   78 AILIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVR-SLLRLLLLVLL-LYLGL  146 (251)
T ss_pred             HHHHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHH-HHHHh
Confidence            332322    33 3343    23456677778888899999999999999999999999887 33333232222 33334


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHH
Q 023252          231 KGKGLLIGLATGSFVQAALLALK  253 (285)
Q Consensus       231 g~~g~~~a~~~~~~~~~~~~~~~  253 (285)
                      +..+..++..++..+..+.....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~  169 (251)
T PF13440_consen  147 NLWSILLAFIISALLALLISFYL  169 (251)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999888888877665443

>PRK10459 colanic acid exporter; Provisional

Probab=98.32  E-value=6.4e-05  Score=68.56  Aligned_cols=182  Identities=13%  Similarity=0.165  Sum_probs=122.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHH-HHHhcCCCccchhhHHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhhcCCChHHH
Q 023252           52 KEFIRFSVPSAVMVCFEWWSYEVLI-LLSGLLPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAA  129 (285)
Q Consensus        52 ~~il~~~~p~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~-~~~~~a~~~~vs~~~G~~~~~~~  129 (285)
                      ++..+-+....+.+........+.. .+...+|  +++.+.++.+..+..+...+. .|++++..    +. .+++.   
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~--p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~---   74 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILD--NHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH---   74 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCC--HHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH---
Confidence            3455656666666666665555544 4455667  558888999888888777544 57776552    21 11222   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHH
Q 023252          130 KMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVN  209 (285)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  209 (285)
                       +.......+....+++..++++++++++..++++ ++.    ...+++.++..++.++.....+.+|+.+|.+.....+
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~  148 (492)
T PRK10459         75 -LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE  148 (492)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence             3344455566666777777777888888776654 442    3567778888888888888999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHH
Q 023252          210 LGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLA  251 (285)
Q Consensus       210 ~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~  251 (285)
                      ... .+........+. ..++|..+..++..++..+..+...
T Consensus       149 ~~~-~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~  188 (492)
T PRK10459        149 ISA-VVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG  188 (492)
T ss_pred             HHH-HHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH
Confidence            776 344444443333 4567888888888888887766543

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.31  E-value=0.00024  Score=59.25  Aligned_cols=160  Identities=13%  Similarity=0.083  Sum_probs=113.2

Q ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCc-cchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCC
Q 023252           46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNP-KLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAG  124 (285)
Q Consensus        46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~  124 (285)
                      +....++++++.-+|..+++....++-.+.+..+++-.++ .+.+|+|+++..+.-++..+...+-+....++.+.    
T Consensus         5 ~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~----   80 (345)
T PF07260_consen    5 PSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK----   80 (345)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch----
Confidence            4466788999999999999999999988888888774433 35599999999999999999888887776666542    


Q ss_pred             ChHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhccc-ccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCc
Q 023252          125 NPKAAKMAVCAIIILAAAEM-VT-VSIVLLFCRHI-LGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGW  201 (285)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  201 (285)
                       .+  ++....++..+..+. +. ..+..-.+.+. +-.+++-|+++.+.+...+.++.+..+++++.....|++-=..+
T Consensus        81 -rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~  157 (345)
T PF07260_consen   81 -RS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRH  157 (345)
T ss_pred             -hh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Confidence             22  222222222221111 11 11112222222 34556779999999999999999999999999999988886677


Q ss_pred             chhhHHHHHHH
Q 023252          202 QKIGAFVNLGA  212 (285)
Q Consensus       202 ~~~~~~~~~~~  212 (285)
                      +......++..
T Consensus       158 s~iV~~aSI~~  168 (345)
T PF07260_consen  158 SWIVGSASIAD  168 (345)
T ss_pred             eeEeehHHHHH
Confidence            77766666654

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.28  E-value=7.8e-06  Score=61.69  Aligned_cols=80  Identities=20%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHH
Q 023252          175 MVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKI  254 (285)
Q Consensus       175 ~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~  254 (285)
                      ++++.++..++.++......++++.||++..+..++.+ .++++++++.+.+.  +|..|+.+++.+++.+......+..
T Consensus         1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~   77 (146)
T PF14667_consen    1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYV   77 (146)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999998 88999999998544  8999999999999999999888887


Q ss_pred             Hhc
Q 023252          255 VFT  257 (285)
Q Consensus       255 ~~~  257 (285)
                      +|.
T Consensus        78 ~k~   80 (146)
T PF14667_consen   78 RKK   80 (146)
T ss_pred             HHH
Confidence            764

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=8.7e-05  Score=64.56  Aligned_cols=203  Identities=10%  Similarity=-0.020  Sum_probs=139.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC-ccchhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhhhcCCChHH
Q 023252           51 IKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPN-PKLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNELGAGNPKA  128 (285)
Q Consensus        51 ~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~~G~~~~~~  128 (285)
                      -++..+.......+.+.-++.+--+-.+++...- .-.+.|.|.++++..++.. .+.-.+-...-...++...+++.|+
T Consensus       238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~  317 (530)
T KOG2864|consen  238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN  317 (530)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence            3456666666666666666655544444432210 0125677888888877665 6677888888888888887777776


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252          129 AKMA---VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG  205 (285)
Q Consensus       129 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  205 (285)
                      .|+.   ....+++...+++...++-...++.+..+++++.=....+...++++++..++.++|.+..+++.+.++.+..
T Consensus       318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi  397 (530)
T KOG2864|consen  318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI  397 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence            6664   5566666777777666666677777777776533222235578999999999999999999999999887765


Q ss_pred             HHH---HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          206 AFV---NLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       206 ~~~---~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      -..   .+.. -++.+..+|++...  +|..|...|..+...++.+....++++
T Consensus       398 ~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~  448 (530)
T KOG2864|consen  398 DKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH  448 (530)
T ss_pred             HhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443   2322 34566788998888  667999999888877776655444443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.12  E-value=3.4e-05  Score=64.15  Aligned_cols=108  Identities=18%  Similarity=0.293  Sum_probs=89.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 023252            7 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPK   86 (285)
Q Consensus         7 Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~   86 (285)
                      ++.+..++..++..+..++..++.+++.+     .+....+++..|++++.+.|..+..+...+....|..+++++.+ +
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~  238 (273)
T PF01943_consen  165 SLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-P  238 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-H
Confidence            36778888888888888777777654322     11222348889999999999999999999999999988888764 6


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhh
Q 023252           87 LEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE  120 (285)
Q Consensus        87 ~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~  120 (285)
                      ++++.|+++.++......+..++.++..|..++.
T Consensus       239 ~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l  272 (273)
T PF01943_consen  239 EAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL  272 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999875

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=97.88  E-value=0.0028  Score=57.63  Aligned_cols=184  Identities=17%  Similarity=0.199  Sum_probs=124.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHH-HHHHHhcCCCccchhhHHHHHHHHHHHHHHHh-hhhhhhHHHHHhhhhcCCChHHH
Q 023252           52 KEFIRFSVPSAVMVCFEWWSYEV-LILLSGLLPNPKLEASVFSLCFTITYLHYFIP-YGFGSTVSTRVSNELGAGNPKAA  129 (285)
Q Consensus        52 ~~il~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~-~~~~~a~~~~vs~~~G~~~~~~~  129 (285)
                      ++..|-+......++.......+ .......+|  +++.+.++.+..+..++..+. .|+..+..-.++++..++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg--~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~   83 (480)
T COG2244           6 KKLIKGALWLLLGTLISALLGLITIPLLARLLG--PEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL   83 (480)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhC--cccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence            44455555555555555544444 456667777  558888999999999888776 89999999999999988888888


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHH
Q 023252          130 KMA-VCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFV  208 (285)
Q Consensus       130 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  208 (285)
                      +.. ....+......+.+.........+.       +++    ....+.+.....+.........+.+|+.++.+.....
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T COG2244          84 ILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS  152 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            887 7777777777766665555544443       333    4456788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHH
Q 023252          209 NLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALK  253 (285)
Q Consensus       209 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~  253 (285)
                      .+ .. ...+...+.+..   .......++...+..+........
T Consensus       153 ~~-~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  192 (480)
T COG2244         153 IV-SS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLIL  192 (480)
T ss_pred             HH-HH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44 42 222233333322   234444555555555544444333

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.46  E-value=0.0022  Score=52.64  Aligned_cols=103  Identities=15%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhccccchhcccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCc
Q 023252            7 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNP   85 (285)
Q Consensus         7 Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~   85 (285)
                      ++.+..++..++.++..++...+.+  ++.+.. +     +.+..| .++.+.|..+..+........+..+++. +|  
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--  215 (251)
T PF13440_consen  147 NLWSILLAFIISALLALLISFYLLR--RKLRLS-F-----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--  215 (251)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc--cccCCC-c-----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence            5667777777887777666555322  111111 1     122234 7999999999999999999999999888 76  


Q ss_pred             cchhhHHHHHHHHHHHHH-HHhhhhhhhHHHHHhhh
Q 023252           86 KLEASVFSLCFTITYLHY-FIPYGFGSTVSTRVSNE  120 (285)
Q Consensus        86 ~~~~aa~~~~~~i~~~~~-~~~~~~~~a~~~~vs~~  120 (285)
                      .++++.|+++.++...+. .+..++++...|..|+.
T Consensus       216 ~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  216 PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            679999999999999888 89999999999998863

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=92.07  E-value=1.8  Score=32.06  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=26.4

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 023252            3 KIKLGSNGAALAVGLSYWFNVLLLGFYIKY   32 (285)
Q Consensus         3 ~~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~   32 (285)
                      .+.+|..|+++|+.+++.+..+...++.+|
T Consensus        50 i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen   50 IPRFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999998888887764

>COG4267 Predicted membrane protein [Function unknown]

Probab=89.47  E-value=14  Score=32.41  Aligned_cols=136  Identities=20%  Similarity=0.224  Sum_probs=99.4

Q ss_pred             HHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHH
Q 023252          104 FIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSI  183 (285)
Q Consensus       104 ~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~  183 (285)
                      .+..|+.....-.+|..+=+||++++.....-.+.+.+..+..++.++++..+        +.+.     .|-...+...
T Consensus        75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~~--------~~si-----~yk~l~~~~F  141 (467)
T COG4267          75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVNN--------QYSI-----VYKILACALF  141 (467)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhcC--------chhH-----HHHHHHHHHH
Confidence            45678899999999999999999999999998888888888877754332222        2221     2233344445


Q ss_pred             HhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 023252          184 IMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVF  256 (285)
Q Consensus       184 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  256 (285)
                      ...+..-.....+.++.|-+...+.-..+ ..+.+.+++++-.   .+..|.-++..++..+...+....+.+
T Consensus       142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr  210 (467)
T COG4267         142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            55666667788899999999999888888 6666776666544   589999999999987777665544443

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=88.04  E-value=8.3  Score=32.91  Aligned_cols=102  Identities=12%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCc---cchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhh
Q 023252           46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL-LPNP---KLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNEL  121 (285)
Q Consensus        46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~---~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~  121 (285)
                      .+...++++++..+|.++....+..+..+.+.++++ +|..   +++++...+..+...+    ++|..+=.-..--...
T Consensus       229 ~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~----~y~w~~~~r~~~paf~  304 (345)
T PF07260_consen  229 GDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHM----PYGWLTELRAVYPAFD  304 (345)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcC----cchhHHhHHhhCchhh
Confidence            346678999999999999999999999999999988 6643   2345544444444433    3344443333333333


Q ss_pred             cCCChHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 023252          122 GAGNPKAAKM--------AVCAIIILAAAEMVTVSIVL  151 (285)
Q Consensus       122 G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  151 (285)
                      -.++.++.++        ..++....+.++++.....+
T Consensus       305 ~~~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~  342 (345)
T PF07260_consen  305 KNNPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVM  342 (345)
T ss_pred             ccCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333332        56666666666666655544

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression []

Probab=82.63  E-value=9.1  Score=25.58  Aligned_cols=40  Identities=15%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             hhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 023252          107 YGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVT  146 (285)
Q Consensus       107 ~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~  146 (285)
                      .-++.-.+..+-..+.+||++++++..+++..++.+-.++
T Consensus        34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~   73 (82)
T PF04505_consen   34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII   73 (82)
T ss_pred             HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence            3345555667778888999999999999998888655444

; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
3mkt_A	460	Structure Of A Cation-Bound Multidrug And Toxin Com		2e-09

>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)
Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRA--SFSIDVFSSIKEFIRFSVPSA 62
           +LG  G  +A  + YW  +LLL FYI  S      +   +F       +    R   P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248
Query: 63  VMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELG 122
             + FE   + V+ LL   L +  + A   +L F  + L +  P   G+ VS RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVVAAHQVALNF--SSLVFMFPMSIGAAVSIRVGHKLG 306
Query: 123 AGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLS 182
             + K A +A    ++   A     +++ +  R  +    + ++ +V     ++ F  + 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366
Query: 183 IIMDSLQAVLSGVARGSGWQKIGAFVNLG--AYYLVGIPIAAVL 224
             MD++Q V +G  R  G++ + A  +    +Y+++G+P   +L
Sbjct: 367 QCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYIL 408

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	8e-50

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  169 bits (431), Expect = 8e-50
 Identities = 58/255 (22%), Positives = 103/255 (40%), Gaps = 9/255 (3%)

Query: 5   KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTR--ASFSIDVFSSIKEFIRFSVPSA 62
           +LG  G  +A  + YW  +LLL FYI  S      +   +F       +    R   P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 63  VMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELG 122
             + FE   + V+ LL   L +  + A    +    + L +  P   G+ VS RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVVAA--HQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 123 AGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLS 182
             + K A +A    ++   A     +++ +  R  +    + ++ +V     ++ F  + 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 183 IIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFV-----FQLKGKGLLI 237
             MD++Q V +G  RG             +Y+++G+P   +L          L  KG  +
Sbjct: 367 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 426

Query: 238 GLATGSFVQAALLAL 252
           G   G    A +L  
Sbjct: 427 GFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	100.0
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.89

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=100.00  E-value=3.5e-32  Score=243.13  Aligned_cols=252  Identities=23%  Similarity=0.384  Sum_probs=229.7

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHhccccchh-c-ccCCCHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 023252            4 IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEK-T-RASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGL   81 (285)
Q Consensus         4 ~~~Gv~Gaa~at~ia~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~   81 (285)
                      +++|+.|+++||.+++++..++..++++++++.++ + ++++.+.+++.+|++++.+.|..++.+.......+++.++++
T Consensus       188 p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~  267 (460)
T 3mkt_A          188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAP  267 (460)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999998888876544322 1 223334567889999999999999999999999999999999


Q ss_pred             CCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 023252           82 LPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYA  161 (285)
Q Consensus        82 ~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  161 (285)
                      +|  +.++++|+++.++.++...+..+++++..|.+++++|+||++++++..++++.+++.++++.++.++++++++.++
T Consensus       268 ~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  345 (460)
T 3mkt_A          268 LG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL  345 (460)
T ss_dssp             TS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98  6699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH----hc-CCcchhh
Q 023252          162 LSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFV----FQ-LKGKGLL  236 (285)
Q Consensus       162 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~  236 (285)
                      |++|+++.+.+..+++++++..++.+++.+..+++++.||++.+++.++.+.|++++|+++++...    ++ +|..|+|
T Consensus       346 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~  425 (460)
T 3mkt_A          346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW  425 (460)
T ss_dssp             SSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHH
Confidence            999999889999999999999999999999999999999999999999999779999999999887    67 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 023252          237 IGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       237 ~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      +++.+++.+.+++..++++|.
T Consensus       426 ~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          426 LGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988876665554

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.89  E-value=4.5e-22  Score=177.55  Aligned_cols=208  Identities=17%  Similarity=0.188  Sum_probs=192.5

Q ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhcCCC
Q 023252           46 DVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGN  125 (285)
Q Consensus        46 ~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~~~~~~~~~~~~~a~~~~vs~~~G~~~  125 (285)
                      ..++..|++++.++|..++++...+...+++.+++++|  ++++++++.+.++..+...+..|++++..+.+++++|++|
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45788999999999999999999999999999999999  6689999999999888888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHhhHHHHHHHHhhhHHHHHHHHHhccCcchhh
Q 023252          126 PKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIG  205 (285)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  205 (285)
                      ++++++..+.++.+..+.+++..++ +.+.+++..+++.|++..+.+..|+++++++.++..+.....+++|+.||.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA  162 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            9999999999999999999998775 778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----hcCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023252          206 AFVNLGAYYLVGIPIAAVLAFV----FQLKGKGLLIGLATGSFVQAALLALKIVFT  257 (285)
Q Consensus       206 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  257 (285)
                      +..++.+ .++++.+++++...    +++|..|+.+++.+++.+..+...+.++++
T Consensus       163 ~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          163 MVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999998 77899999998865    379999999999999999998877766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00