Citrus Sinensis ID: 023262
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 285 | ||||||
| 255540123 | 297 | conserved hypothetical protein [Ricinus | 0.964 | 0.925 | 0.665 | 1e-99 | |
| 449503339 | 291 | PREDICTED: bidirectional sugar transport | 0.901 | 0.883 | 0.634 | 5e-92 | |
| 224136248 | 275 | predicted protein [Populus trichocarpa] | 0.954 | 0.989 | 0.591 | 8e-91 | |
| 449454808 | 291 | PREDICTED: bidirectional sugar transport | 0.901 | 0.883 | 0.630 | 2e-90 | |
| 357464993 | 311 | Protein RUPTURED POLLEN GRAIN [Medicago | 0.964 | 0.884 | 0.553 | 2e-90 | |
| 449503337 | 294 | PREDICTED: bidirectional sugar transport | 0.957 | 0.928 | 0.580 | 6e-89 | |
| 449472119 | 295 | PREDICTED: bidirectional sugar transport | 0.870 | 0.840 | 0.612 | 2e-87 | |
| 449454810 | 295 | PREDICTED: bidirectional sugar transport | 0.870 | 0.840 | 0.608 | 5e-87 | |
| 356516515 | 309 | PREDICTED: bidirectional sugar transport | 0.950 | 0.877 | 0.573 | 2e-86 | |
| 147776011 | 273 | hypothetical protein VITISV_023352 [Viti | 0.926 | 0.967 | 0.607 | 4e-86 |
| >gi|255540123|ref|XP_002511126.1| conserved hypothetical protein [Ricinus communis] gi|223550241|gb|EEF51728.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/281 (66%), Positives = 227/281 (80%), Gaps = 6/281 (2%)
Query: 1 MTMFSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLW 60
M +F+TH+PSVF FGLLGNIVSF+VFLAP+PTF RVCKKKSTEGFQS PYVV+LFSAMLW
Sbjct: 1 MAIFNTHNPSVFVFGLLGNIVSFVVFLAPVPTFLRVCKKKSTEGFQSFPYVVSLFSAMLW 60
Query: 61 IYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILL 120
+YYA +K DAFLLITIN+ GC+IETIY+ L+IT+APKQAR+ TL++LLLLNFGGF ILL
Sbjct: 61 LYYASLKSDAFLLITINSVGCLIETIYITLFITYAPKQARITTLKILLLLNFGGFCLILL 120
Query: 121 LSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAV 180
LSHFLAKGS R +LGWVCV+FSVSVFAAPLS+MR+V+RTKSVEFMPFYLS FLTL+A+
Sbjct: 121 LSHFLAKGS-ERATILGWVCVIFSVSVFAAPLSVMRIVIRTKSVEFMPFYLSFFLTLSAI 179
Query: 181 MWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRNYRRVVVEDVNKVPEHTVDVVKLS 240
MW FYGL LKD+Y+AVPN+LG +FGV+QMILY IY+N + VV E K+PEH VD VKLS
Sbjct: 180 MWLFYGLLLKDLYIAVPNILGLVFGVLQMILYVIYKNVKTVVEEP--KLPEHNVDNVKLS 237
Query: 241 TNNMTASEEQ--TNSRNNFDDKNEHEQANDQHEKARESCNQ 279
+++ + S+ N DD H + H+ + +
Sbjct: 238 AVITCEVQQEVCSQSQPNGDD-GAHNKEQKMHDNPANAVTE 277
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503339|ref|XP_004161953.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224136248|ref|XP_002322282.1| predicted protein [Populus trichocarpa] gi|222869278|gb|EEF06409.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449454808|ref|XP_004145146.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Cucumis sativus] gi|449472123|ref|XP_004153502.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357464993|ref|XP_003602778.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] gi|355491826|gb|AES73029.1| Protein RUPTURED POLLEN GRAIN [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449503337|ref|XP_004161952.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449472119|ref|XP_004153501.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449454810|ref|XP_004145147.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356516515|ref|XP_003526939.1| PREDICTED: bidirectional sugar transporter SWEET12-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|147776011|emb|CAN71371.1| hypothetical protein VITISV_023352 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 285 | ||||||
| TAIR|locus:2157951 | 294 | SWEET13 [Arabidopsis thaliana | 0.835 | 0.809 | 0.555 | 1.1e-68 | |
| UNIPROTKB|P93332 | 268 | N3 "Bidirectional sugar transp | 0.919 | 0.977 | 0.490 | 9.4e-66 | |
| TAIR|locus:2171721 | 285 | SWEET12 [Arabidopsis thaliana | 0.859 | 0.859 | 0.513 | 1.2e-65 | |
| TAIR|locus:2117263 | 281 | SWEET14 [Arabidopsis thaliana | 0.943 | 0.957 | 0.503 | 2.9e-64 | |
| UNIPROTKB|B8BKP4 | 303 | SWEET14 "Bidirectional sugar t | 0.838 | 0.788 | 0.529 | 2.6e-63 | |
| UNIPROTKB|Q2R3P9 | 303 | SWEET14 "Bidirectional sugar t | 0.838 | 0.788 | 0.529 | 2.6e-63 | |
| TAIR|locus:2114540 | 289 | SWEET11 [Arabidopsis thaliana | 0.842 | 0.830 | 0.504 | 3.8e-62 | |
| UNIPROTKB|A2X5B4 | 319 | SWEET15 "Bidirectional sugar t | 0.831 | 0.742 | 0.502 | 1.3e-61 | |
| UNIPROTKB|Q6K602 | 319 | SWEET15 "Bidirectional sugar t | 0.831 | 0.742 | 0.502 | 1.3e-61 | |
| TAIR|locus:2179867 | 292 | SAG29 "senescence-associated g | 0.838 | 0.818 | 0.470 | 1.5e-60 |
| TAIR|locus:2157951 SWEET13 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 135/243 (55%), Positives = 167/243 (68%)
Query: 3 MFSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIY 62
M T++ F FG+LGNI+SF+VFLAP+PTF R+CKKKSTEGFQSLPYV ALFSAMLWIY
Sbjct: 1 MALTNNLWAFVFGILGNIISFVVFLAPVPTFVRICKKKSTEGFQSLPYVSALFSAMLWIY 60
Query: 63 YAMMKKD-AFLLITINAFGCVIETIYLALYITFAPKQARXXXXXXXXXXXXXXXXXXXXX 121
YAM K AFLLITINAFGCVIETIY+ L++++A K+ R
Sbjct: 61 YAMQKDGTAFLLITINAFGCVIETIYIVLFVSYANKKTRISTLKVLGLLNFLGFAAIVLV 120
Query: 122 XXXXAKGSAARLRLLGWVCXXXXXXXXXXPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVM 181
KGS R ++LG +C PLSIMR+VVRT+SVEFMPF LSLFLT++AV
Sbjct: 121 CELLTKGST-REKVLGGICVGFSVSVFAAPLSIMRVVVRTRSVEFMPFSLSLFLTISAVT 179
Query: 182 WFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRNYRRVVVEDVNK---VPEHTVDVVK 238
W FYGL +KD YVA+PNVLG G VQMILY I++ Y+ V + +K V +H++D+ K
Sbjct: 180 WLFYGLAIKDFYVALPNVLGAFLGAVQMILYIIFKYYKTPVAQKTDKSKDVSDHSIDIAK 239
Query: 239 LST 241
L+T
Sbjct: 240 LTT 242
|
|
| UNIPROTKB|P93332 N3 "Bidirectional sugar transporter N3" [Medicago truncatula (taxid:3880)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2171721 SWEET12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2117263 SWEET14 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B8BKP4 SWEET14 "Bidirectional sugar transporter SWEET14" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2R3P9 SWEET14 "Bidirectional sugar transporter SWEET14" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2114540 SWEET11 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A2X5B4 SWEET15 "Bidirectional sugar transporter SWEET15" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6K602 SWEET15 "Bidirectional sugar transporter SWEET15" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2179867 SAG29 "senescence-associated gene 29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00017991001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (270 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 285 | |||
| pfam03083 | 87 | pfam03083, MtN3_slv, Sugar efflux transporter for | 2e-31 | |
| pfam03083 | 87 | pfam03083, MtN3_slv, Sugar efflux transporter for | 3e-30 |
| >gnl|CDD|202529 pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-31
Identities = 43/86 (50%), Positives = 59/86 (68%)
Query: 135 LLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYV 194
LLG +CVVFSV+VF +PLSI+R V++TKSVE MPF L L+A +W YGL KD Y+
Sbjct: 2 LLGLLCVVFSVAVFLSPLSILRKVIKTKSVEGMPFLPFLAGLLSASLWLLYGLLKKDGYI 61
Query: 195 AVPNVLGFIFGVVQMILYAIYRNYRR 220
+PN +G + G + +IL+ IY +
Sbjct: 62 IIPNGVGCVLGTIYLILFIIYPPKKA 87
|
This family includes proteins such as drosophila saliva, MtN3 involved in root nodule development and a protein involved in activation and expression of recombination activation genes (RAGs). Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This family contains a region of two transmembrane helices that is found in two copies in most members of the family. This family also contains specific sugar efflux transporters that are essential for the maintenance of animal blood glucose levels, plant nectar production, and plant seed and pollen development. In many organisims it meditaes gluose transport; in Arabidopsis it is necessary for pollen viability; and two of the rice homologues are specifically exploited by bacterial pathogens for virulence by means of direct binding of a bacterial effector to the SWEET promoter. Length = 87 |
| >gnl|CDD|202529 pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 285 | |||
| KOG1623 | 243 | consensus Multitransmembrane protein [General func | 100.0 | |
| PF03083 | 87 | MtN3_slv: Sugar efflux transporter for intercellul | 99.85 | |
| PF03083 | 87 | MtN3_slv: Sugar efflux transporter for intercellul | 99.85 | |
| KOG1623 | 243 | consensus Multitransmembrane protein [General func | 99.48 | |
| COG4095 | 89 | Uncharacterized conserved protein [Function unknow | 99.18 | |
| COG4095 | 89 | Uncharacterized conserved protein [Function unknow | 99.14 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 98.81 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 98.27 | |
| KOG3211 | 230 | consensus Predicted endoplasmic reticulum membrane | 98.07 | |
| PF04193 | 61 | PQ-loop: PQ loop repeat | 97.82 | |
| KOG2913 | 260 | consensus Predicted membrane protein [Function unk | 96.5 | |
| TIGR00951 | 220 | 2A43 Lysosomal Cystine Transporter. | 95.2 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 94.89 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 94.88 | |
| PHA02246 | 192 | hypothetical protein | 94.87 | |
| smart00679 | 32 | CTNS Repeated motif present between transmembrane | 91.5 | |
| PF03650 | 119 | MPC: Uncharacterised protein family (UPF0041); Int | 90.16 | |
| PHA02246 | 192 | hypothetical protein | 88.98 | |
| PF10688 | 163 | Imp-YgjV: Bacterial inner membrane protein; InterP | 88.74 | |
| PF03650 | 119 | MPC: Uncharacterised protein family (UPF0041); Int | 82.58 |
| >KOG1623 consensus Multitransmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=366.16 Aligned_cols=229 Identities=49% Similarity=0.892 Sum_probs=200.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCcCCccchhHHHHHHHHHHHHHHhhhcC-CceeEEeehhHHHHHHH
Q 023262 7 HDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKK-DAFLLITINAFGCVIET 85 (285)
Q Consensus 7 ~~~~~~~~g~lg~i~si~m~lSPlp~i~~I~K~Kst~~~s~~p~v~~l~n~~lWl~YG~l~~-d~~~li~~N~~G~~l~~ 85 (285)
++....++|.+|+++++.+|++|+|+++||+|+||+|++|+.||+++++||++|+.||.+++ |. .++.+|.+|+++++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~-llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDY-LLITINGIGLVIET 80 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCce-EEEEEehhcHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999888 65 68999999999999
Q ss_pred HHHHhHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhheecchhHHHHhhhhhHHHHHHHHhhcccchhheeeecCccc
Q 023262 86 IYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVE 165 (285)
Q Consensus 86 ~y~~vf~~y~~~k~r~~~~~~~~~~~~~~~~~i~l~t~~~~~~~~~~~~i~G~i~~v~si~~~~sPL~~i~~VirtKs~~ 165 (285)
+|+..|+.|+++|+... .....+.++++++++++....++++.|.+.+|++|.+++++||+|||..+|+|||+||+|
T Consensus 81 ~Yi~~f~~ya~~k~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVK---IVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHheecCchheeE---eeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 99999999999876221 222233456666677778888888788999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhhcccCeeEEechhHHHHHHHHHhhheeEEcCCccchhcccccCCCccccceec
Q 023262 166 FMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVPNVLGFIFGVVQMILYAIYRNYRRVVVEDVNKVPEHTVDVVKL 239 (285)
Q Consensus 166 ~~p~~~~~~~~~n~~lW~~YGll~~D~~i~ipN~iG~~l~~~ql~l~~iy~~~~~~~~~~~~~~~~~~~~~~~~ 239 (285)
+||++++++.++++..|++||++++|.|+.+||++|++++++||++|++|++++.+.....++..|++.+..+.
T Consensus 158 ~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~~~~~~~~~~~~~~~~~~ 231 (243)
T KOG1623|consen 158 YMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKIVPPKQNKKDVVVDEVLL 231 (243)
T ss_pred eechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccccccccccCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999988754433334445555555553
|
|
| >PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) [] | Back alignment and domain information |
|---|
| >PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) [] | Back alignment and domain information |
|---|
| >KOG1623 consensus Multitransmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG4095 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >COG4095 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
|---|
| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
|---|
| >KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only] | Back alignment and domain information |
|---|
| >PF04193 PQ-loop: PQ loop repeat | Back alignment and domain information |
|---|
| >KOG2913 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00951 2A43 Lysosomal Cystine Transporter | Back alignment and domain information |
|---|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
|---|
| >PHA02246 hypothetical protein | Back alignment and domain information |
|---|
| >smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins | Back alignment and domain information |
|---|
| >PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function | Back alignment and domain information |
|---|
| >PHA02246 hypothetical protein | Back alignment and domain information |
|---|
| >PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins | Back alignment and domain information |
|---|
| >PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 285 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 5e-04
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 25/131 (19%)
Query: 2 TMFSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYR-----VCKKKSTEGFQSL-------- 48
+ +T V F L + I T + K Q L
Sbjct: 268 ILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 49 PYVVALFSAML------WIYYAMMKKDAFLLITINAFGCVIE-TIYLALYITFA--PKQA 99
P +++ + + W + + D L I + V+E Y ++ + P A
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 100 RLYTLRLLLLL 110
+ LL L+
Sbjct: 386 HI-PTILLSLI 395
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00