Citrus Sinensis ID: 023264

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccEEccccccccEEEEEccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHcccccccccccccccHHHcccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEEEEEEcccccEEEEEEEEEEccEEEEEccccccccccEEEEcccccEEEEcccccccccccccccccccccEEEEEEEcccccccccccccEccccccccccccHHHHcccccccEEEEEEccccccEEEEEccccccccccccccccEEEccHHHHccHHcccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcc
Coil and Loop (DISEMBL)
matlagnvglkisprlefrgllipwisknnaiscvkgrdysssfpvryvpkksvkikesensvpvkglernelrkqpdasglrtevsnsgrdvkkplkiyepknsvpvnglqrnelqkqsdaselrtevsnsgrdvktsfashkkfqnhnrmtnnnILLDAAKQEFgeeiscehglfeesevfeepQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKlngkkfpsHVIEAVITDFqsrglindslYAESYsrsrwssaswgprrikqgw
Flexible Loop (DISEMBL)
matlagnvglkisprleFRGLLIpwisknnaiscvkgrdysssfpvryvpkksvkikesensvpvkglernelrkqpdasglrtevsnsgrdvkkplkiyepknsvpvnglqrnelqkqsdaselrtevsnsgrdvktsfashkkfqnhnrmtnnNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKklngkkfpshVIEAVItdfqsrglINDSLYAEsysrsrwssaswgprrikqgw
Low Complexity Region (SEG)
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCehglfeesevfeepqevaeeMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLyaesysrsrwssaswGPRRIKQGW
Disordered region (IsUnstruct)
******NVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYV***********************************************************************************************************ILLDAAKQEFGEEISCEHGLF***************MKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESY*******************
Disordered Region (DISOPRED)
*******VGLKISPRLEFRGLLIPWISKNNAISCVKG**********************************************************************************************************************NILLDAAKQEFGEEISCEHGLFEESEV**************************RQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQG*
Disordered Region (DISEMBL)
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNEL****************GRDVKKPLKIYEPKNSVPVNGLQR**********************VKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAE*********************
Disordered Region (DISPRO)
*ATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q1I6B8	155	Regulatory protein RecX O	yes	no	0.235	0.432	0.367	0.0002
P94965	188	Regulatory protein RecX O	yes	no	0.238	0.361	0.352	0.0003
Q03Q74	266	Regulatory protein RecX O	yes	no	0.252	0.270	0.347	0.0003

>sp|Q1I6B8|RECX_PSEE4 Regulatory protein RecX OS=Pseudomonas entomophila (strain L48) GN=recX PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
           A+ LLA R    VE+ +KL  +  P  +IE  +      GL++++ Y ES+ R R S+A 
Sbjct: 15  AMDLLARREHGRVELTRKLRQRGAPDELIEPALDRLAEEGLLSEARYLESFIRYR-SNAG 73

Query: 276 WGPRRIKQ 283
           +GP RI++
Sbjct: 74  YGPARIRE 81

Modulates RecA activity.
Pseudomonas entomophila (strain L48) (taxid: 384676)

>sp|P94965|RECX_MYCS2 Regulatory protein RecX OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=recX PE=3 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
           A+N+ ++LL  RA T  E+  +L  + +P  V   V+      GLI+D  +AE + RSR 
Sbjct: 31  AKNVCLRLLTVRARTRAELETQLTKRGYPDDVSARVLDRLTEVGLIDDEDFAEQWVRSRH 90

Query: 272 SSASWGPR 279
            +A  G R
Sbjct: 91  LNAGKGKR 98

Modulates RecA activity.

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (taxid: 246196)

>sp|Q03Q74|RECX_LACBA Regulatory protein RecX OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=recX PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
           A N A+  L+ +  T  E+R KL   + P+  I A +   +S  L++D+ YA SY R+  
Sbjct: 61  AYNRALDYLSQQLRTEKEVRDKLADLEIPAETIAATLQRLRSLALVDDAHYAASYVRTMM 120

Query: 272 SSASWGPRRIKQ 283
            +   GPR I+Q
Sbjct: 121 HTGDKGPRVIRQ 132

Modulates RecA activity.

Lactobacillus brevis (strain ATCC 367 / JCM 1170) (taxid: 387344)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224061625	376	predicted protein [Populus trichocarpa]	0.940	0.712	0.415	2e-45
296089978	382	unnamed protein product [Vitis vinifera]	0.807	0.602	0.385	8e-40
359494337	301	PREDICTED: regulatory protein recX-like	0.719	0.681	0.387	2e-33
356552462	317	PREDICTED: uncharacterized protein LOC10	0.754	0.678	0.341	9e-31
297834150	378	predicted protein [Arabidopsis lyrata su	0.926	0.698	0.357	4e-30
255582796	364	hypothetical protein RCOM_0104450 [Ricin	0.807	0.631	0.375	6e-30
9294525	379	unnamed protein product [Arabidopsis tha	0.926	0.696	0.332	3e-27
21592783	382	contains similarity to regulatory protei	0.926	0.691	0.332	4e-27
18399925	382	regulatory protein RecX family protein [	0.926	0.691	0.332	4e-27
449444022	328	PREDICTED: uncharacterized protein LOC10	0.817	0.710	0.363	2e-24

>gi|224061625|ref|XP_002300573.1| predicted protein [Populus trichocarpa] gi|222847831|gb|EEE85378.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 181/301 (60%), Gaps = 33/301 (10%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDY-SSSFPVRYVPKKSVKIKES 59
           M+  AGN+  K+S  L+FR  +IPW+ +NNA+ C+KGR++ SSS PVRY PK+S K  E 
Sbjct: 1   MSIFAGNLASKVSSSLQFRVSVIPWVKRNNAVLCLKGREFNSSSVPVRYTPKRSSKSDEI 60

Query: 60  ENSVPVKGLERNELRKQPDASGLRTEVSNSGRD-VKKPLKIYEPKNSVPVNGLQRNELQK 118
           ENS+P+KG ++    K  D       +++  +  +    +++E  N +PV   ++    K
Sbjct: 61  ENSLPMKGDKKRVFGKNLDGVSGNFGLNDKAKGRMGSEKRVFE--NPLPVKSSEKRVFDK 118

Query: 119 QSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQ------------EF 166
             D              V+ +F  ++K +N NR+ N ++  D A+Q            + 
Sbjct: 119 NLDG-------------VRGNFRLNEKVKNQNRICNESLSFDDARQVKQNALEVTAFSQL 165

Query: 167 GEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAA---KARQDAENLAVKLLATR 223
           GE+I+ E       E+  EP+E  EE  + Q+KD   Q+    K  QDAE +AV LLA R
Sbjct: 166 GEKINHESEP-RSHELMGEPEEDVEESVMQQEKDISNQSMIVHKIMQDAEKVAVGLLARR 224

Query: 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
           A+TAVE+RKKL+GK+FP  ++EAVI DF+SRGL+ND LYAE+YSRSRWSS+SWGPRRIK+
Sbjct: 225 AYTAVELRKKLHGKRFPPDIVEAVIGDFESRGLVNDGLYAETYSRSRWSSSSWGPRRIKK 284

Query: 284 G 284
            
Sbjct: 285 A 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089978|emb|CBI39797.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/288 (38%), Positives = 163/288 (56%), Gaps = 58/288 (20%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESE 60
           M+T  GN   K S + ++R   I W++KNNA+ C+K R Y S  PVRY+PKKS       
Sbjct: 57  MSTFLGNFSCKFSFQFQYRPFFIAWMTKNNALCCMKNRAYGS-VPVRYIPKKS------- 108

Query: 61  NSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQS 120
                                                  Y+ ++S  +   +  E+Q   
Sbjct: 109 ---------------------------------------YKVEDSKSLKSSEDEEIQDC- 128

Query: 121 DASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEES 180
               +R   S+ GR  +T+FA  +K +  ++   NN++ DA + E  + I C+  + +  
Sbjct: 129 ----VRIRASDGGRSYRTTFAWDEKNKIQDKRPMNNLIFDA-ESESEDAIDCDVRVVD-F 182

Query: 181 EVFEEPQEVAEEMKILQQKDF----YLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNG 236
           E  +EP++V +E +I Q+KD+      Q +K++QDAE LA++LLATRA+TAVE++KKL+G
Sbjct: 183 EFMQEPEDVVKEFRIYQEKDYPELDVSQVSKSKQDAEKLAIELLATRAYTAVELKKKLHG 242

Query: 237 KKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQG 284
           K+    + EAVI DFQSRGLIND+LYAE++SRSRWSS+SWGPRRIKQ 
Sbjct: 243 KRVACDITEAVINDFQSRGLINDALYAETFSRSRWSSSSWGPRRIKQA 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494337|ref|XP_002267915.2| PREDICTED: regulatory protein recX-like [Vitis vinifera]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/263 (38%), Positives = 150/263 (57%), Gaps = 58/263 (22%)

Query: 26  ISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVKGLERNELRKQPDASGLRTE 85
           ++KNNA+ C+K R Y S  PVRY+PKKS                                
Sbjct: 1   MTKNNALCCMKNRAYGS-VPVRYIPKKS-------------------------------- 27

Query: 86  VSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKK 145
                         Y+ ++S  +   +  E+Q       +R   S+ GR  +T+FA  +K
Sbjct: 28  --------------YKVEDSKSLKSSEDEEIQDC-----VRIRASDGGRSYRTTFAWDEK 68

Query: 146 FQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDF---- 201
            +  ++   NN++ DA + E  + I C+  + +  E  +EP++V +E +I Q+KD+    
Sbjct: 69  NKIQDKRPMNNLIFDA-ESESEDAIDCDVRVVD-FEFMQEPEDVVKEFRIYQEKDYPELD 126

Query: 202 YLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSL 261
             Q +K++QDAE LA++LLATRA+TAVE++KKL+GK+    + EAVI DFQSRGLIND+L
Sbjct: 127 VSQVSKSKQDAEKLAIELLATRAYTAVELKKKLHGKRVACDITEAVINDFQSRGLINDAL 186

Query: 262 YAESYSRSRWSSASWGPRRIKQG 284
           YAE++SRSRWSS+SWGPRRIKQ 
Sbjct: 187 YAETFSRSRWSSSSWGPRRIKQA 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552462|ref|XP_003544586.1| PREDICTED: uncharacterized protein LOC100803154 [Glycine max]

 Score =  140 bits (352), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 135/290 (46%), Gaps = 75/290 (25%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESE 60
           MA  A N+G  IS     R   I        I C+K R+YSSS P+RY+   S ++K  E
Sbjct: 3   MAGFAANIGFNISSHFPCRVFSIHRSIWKFQIVCLKRREYSSSVPIRYISSTSCRVKILE 62

Query: 61  NSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQS 120
            ++PVK L        PD                         N + +NG          
Sbjct: 63  TALPVKSLGYCSC---PDV------------------------NVLKING---------- 85

Query: 121 DASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEES 180
                       G+DV+ + A  +  Q+ N +                   C   LF++S
Sbjct: 86  ------------GKDVQATIAHCEISQDPNEI-------------------CPDLLFDDS 114

Query: 181 E--VFEEPQEVAEEMKILQQKDF----YLQAAKARQDAENLAVKLLATRAFTAVEMRKKL 234
           E   F++ +EV E + I +  D      +Q  K   D E  A+KLLA+RA TA+E+RKKL
Sbjct: 115 EQDSFDQMEEVGE-LTIHEGGDSCDQELIQIDKFTSDVEEAAIKLLASRALTALELRKKL 173

Query: 235 NGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQG 284
            GK+F    +EAVI  FQ RG IND LYAE++S+SRW+S+SWGPRRIKQ 
Sbjct: 174 LGKRFSPDSVEAVINKFQRRGFINDRLYAETFSQSRWTSSSWGPRRIKQA 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834150|ref|XP_002884957.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330797|gb|EFH61216.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 156/291 (53%), Gaps = 27/291 (9%)

Query: 9   GLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKESENSVPVK 66
           G ++S  ++ R  +IPW+ +++A  I C   RDY+SS  ++YVP KS KI +   S P  
Sbjct: 5   GFRLSIAIQHRVFVIPWVKRHSAPRILCSDQRDYTSSGLIKYVPNKSRKITQDLTSQP-- 62

Query: 67  GLERNELRKQPDASGLRTEVSNSGRDVKKP--LKIYEPKNSVPVNGLQRNE-------LQ 117
            L+   L    D S L ++V  + ++ +    L + E  ++     +  ++       L 
Sbjct: 63  -LDVTRL----DHSVLGSQVKGNSKEARDGTFLDLQEKNDTGSYMNVSCDDSDEGILSLD 117

Query: 118 KQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNN-NILLDAAKQEFGEEISCE--- 173
           K  +AS  R + S  G  VK           H R+ N+  +  DA+  +  EE S E   
Sbjct: 118 KGINAS--RWDHSVLGSKVKEETGEGTVL--HLRVKNDAEMYSDASCDDSNEESSNEVRS 173

Query: 174 HGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKK 233
            G     +  +   +V   M+  Q K    +A K  Q+AE++A++ L  RA++A +++KK
Sbjct: 174 TGYKSTRQHKQAYDKVKLHMEAEQAKSSK-EACKTTQEAEHMAMRYLGLRAYSAADLKKK 232

Query: 234 LNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQG 284
           L GKKFP  V++ VI DFQ RG INDSLYAES++RSRWSS SWGPRRIKQ 
Sbjct: 233 LMGKKFPLEVVDRVINDFQIRGFINDSLYAESFTRSRWSSLSWGPRRIKQA 283

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582796|ref|XP_002532172.1| hypothetical protein RCOM_0104450 [Ricinus communis] gi|223528140|gb|EEF30209.1| hypothetical protein RCOM_0104450 [Ricinus communis]

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 157/301 (52%), Gaps = 71/301 (23%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSS-SFPVRYVPKKSVKI--- 56
           MA LA      +  RL    + IPW+ +N  + C+K RD+S+ S PVRY+PKKS K+   
Sbjct: 1   MAILASKFSFHLQSRL--FSISIPWVKRNAPVLCLKSRDHSTLSVPVRYIPKKSSKLNEF 58

Query: 57  KESENSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNEL 116
           K+S+N V  K L +    K P          N  +D+ K                  N+ 
Sbjct: 59  KDSDNGVLDKSLNQ----KAP----------NRNQDLYK-------------QDFLSNDA 91

Query: 117 QKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGL 176
           Q+  D    R E+ N  +          KF+ H                  E+++   GL
Sbjct: 92  QQGGDMPGTR-EILNFTK-------LWGKFEKHGN---------------AEKVAAFSGL 128

Query: 177 FE---------ESEVFEEPQEVAEEMKILQQKDFYL----QAAKARQDAENLAVKLLATR 223
            E         + +  EEP++ +E  K++Q +        Q+ +   DAE +A++ LATR
Sbjct: 129 EEGINNDVEVIQHKFMEEPEDSSE--KLIQHERLICKKNAQSGRTMLDAEKMAIEFLATR 186

Query: 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
           AFTAVE+RKKL+GKKFP  ++EAVI DFQ+RGLINDSLYAE++SRSRWSS+SWGPRRIKQ
Sbjct: 187 AFTAVELRKKLHGKKFPPDIVEAVIIDFQARGLINDSLYAETFSRSRWSSSSWGPRRIKQ 246

Query: 284 G 284
            
Sbjct: 247 A 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294525|dbj|BAB02788.1| unnamed protein product [Arabidopsis thaliana]

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 152/307 (49%), Gaps = 43/307 (14%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKE 58
           M  L   + + I     FR   IPW  +++   I C + RDY SS   +YVPKKS KI E
Sbjct: 1   MLKLGFRLAIGIQHHRLFR---IPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITE 57

Query: 59  SENS--------------VPVKGLERN-------ELRKQPDASGLRTEVSNSGRDVKKPL 97
              S                VKG  +        +L+++ D +G  T VS    D     
Sbjct: 58  DLTSQQFDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEEND-TGSYTNVSCDDSD----- 111

Query: 98  KIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNI 157
              E   S+   G+  + L      S+++  +  +G D  T F  H + +N   M ++ +
Sbjct: 112 ---EGFMSLD-KGIDASRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-V 162

Query: 158 LLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAV 217
             D +  E   E+    G     +  +   ++   ++  Q K    +A K  QDAE++A+
Sbjct: 163 SCDDSNDESSNEVRST-GYKSTRQHKQAYDKIKLHLEAEQAKS-SKEACKTTQDAEHMAI 220

Query: 218 KLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG 277
           + L  RA++A +++KKL GKK+P  V++ VI DFQ RG +NDSLYAES++RSRWSS SWG
Sbjct: 221 RYLGLRAYSAADLKKKLIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWG 280

Query: 278 PRRIKQG 284
           PRRIKQ 
Sbjct: 281 PRRIKQA 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592783|gb|AAM64732.1| contains similarity to regulatory protein RecX [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 152/307 (49%), Gaps = 43/307 (14%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKE 58
           M  L   + + I     FR   IPW  +++   I C + RDY SS   +YVPKKS KI E
Sbjct: 1   MLKLGFRLAIGIQHHRLFR---IPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITE 57

Query: 59  SENS--------------VPVKGLERN-------ELRKQPDASGLRTEVSNSGRDVKKPL 97
              S                VKG  +        +L+++ D +G  T VS    D     
Sbjct: 58  DLTSQQFDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEEND-TGSYTNVSCDDSD----- 111

Query: 98  KIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNI 157
              E   S+   G+  + L      S+++  +  +G D  T F  H + +N   M ++ +
Sbjct: 112 ---EGFMSLD-KGIDASRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-V 162

Query: 158 LLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAV 217
             D +  E   E+    G     +  +   ++   ++  Q K    +A K  QDAE++A+
Sbjct: 163 SCDDSNDESSNEVRST-GYKSTRQHKQAYDKIKLHLEAEQAKS-SKEACKTTQDAEHMAI 220

Query: 218 KLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG 277
           + L  RA++A +++KKL GKK+P  V++ VI DFQ RG +NDSLYAES++RSRWSS SWG
Sbjct: 221 RYLGLRAYSAADLKKKLIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWG 280

Query: 278 PRRIKQG 284
           PRRIKQ 
Sbjct: 281 PRRIKQA 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399925|ref|NP_566448.1| regulatory protein RecX family protein [Arabidopsis thaliana] gi|110743293|dbj|BAE99536.1| hypothetical protein [Arabidopsis thaliana] gi|332641798|gb|AEE75319.1| regulatory protein RecX family protein [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 152/307 (49%), Gaps = 43/307 (14%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKE 58
           M  L   + + I     FR   IPW  +++   I C + RDY SS   +YVPKKS KI E
Sbjct: 1   MLKLGFRLAIGIQHHRLFR---IPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITE 57

Query: 59  SENS--------------VPVKGLERN-------ELRKQPDASGLRTEVSNSGRDVKKPL 97
              S                VKG  +        +L+++ D +G  T VS    D     
Sbjct: 58  DLTSQQFDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEEND-TGSYTNVSCDDSD----- 111

Query: 98  KIYEPKNSVPVNGLQRNELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNI 157
              E   S+   G+  + L      S+++  +  +G D  T F  H + +N   M ++ +
Sbjct: 112 ---EGFMSLD-KGIDASRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-V 162

Query: 158 LLDAAKQEFGEEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAV 217
             D +  E   E+    G     +  +   ++   ++  Q K    +A K  QDAE++A+
Sbjct: 163 SCDDSNDESSNEVRST-GYKSTRQHKQAYDKIKLHLEAEQAKS-SKEACKTTQDAEHMAI 220

Query: 218 KLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG 277
           + L  RA++A +++KKL GKK+P  V++ VI DFQ RG +NDSLYAES++RSRWSS SWG
Sbjct: 221 RYLGLRAYSAADLKKKLIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWG 280

Query: 278 PRRIKQG 284
           PRRIKQ 
Sbjct: 281 PRRIKQA 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444022|ref|XP_004139774.1| PREDICTED: uncharacterized protein LOC101220193 [Cucumis sativus]

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/286 (36%), Positives = 143/286 (50%), Gaps = 53/286 (18%)

Query: 1   MATLAGNVGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRYVPKKSVKIKESE 60
           M  +AG   ++ S  L+ R L I W+ K+   +C+K R YSSS P+RY+P      K S 
Sbjct: 1   MTAMAG-FSIQASIHLQPRVLSISWVKKSGVFACLKARVYSSSGPIRYIP------KGSS 53

Query: 61  NSVPVKGLERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVNGLQRNELQKQS 120
           N       E++     P+                             VNG   N+     
Sbjct: 54  ND------EKSRTHLTPEI----------------------------VNG---NDFSSGL 76

Query: 121 DASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCEHGLFEES 180
           D +  R EV  S    +++F    + QN     N      A     G     +  L    
Sbjct: 77  DVNAWRIEVKPSAVP-RSNFNDTLRDQNQYEKKN----YSAGGSMLGLGDDFDDDLGHFD 131

Query: 181 EVFEEPQEVAEEMKILQQKDF---YLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGK 237
           E+ EEP+ V EE+ I  +K +    +   +++QDAE LA++LLA R+FTAVE+RKKL GK
Sbjct: 132 ELLEEPEGVDEELNIYDKKCYDGNNVGGNQSKQDAEKLAIELLAIRSFTAVELRKKL-GK 190

Query: 238 KFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
           KF    +EAVI DF+ RGLIND LYAE++S SRWSS+SWGPR+IKQ
Sbjct: 191 KFSPDAVEAVINDFKIRGLINDGLYAEAFSHSRWSSSSWGPRKIKQ 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:505006340	382	AT3G13226 "AT3G13226" [Arabido	0.943	0.704	0.275	5.2e-21

TAIR|locus:505006340 AT3G13226 "AT3G13226" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 80/290 (27%), Positives = 130/290 (44%)

Query:     8 VGLKISPRLEFRGLL-IPWISKNNA--ISCVKGRDYSSSFPVRYVPKKSVKIKESENSVP 64
             +G +++  ++   L  IPW  +++   I C + RDY SS   +YVPKKS KI E   S  
Sbjct:     4 LGFRLAIGIQHHRLFRIPWAKRHSVPRILCSEQRDYCSSGLTKYVPKKSRKITEDLTSQQ 63

Query:    65 ---------VKGLE-RNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVPVN-GLQR 113
                      V G + +   ++  D S L  +  N              +  + ++ G+  
Sbjct:    64 FDVTRVDHSVLGFQVKGNSKEARDGSFLDLQEENDTGSYTNVSCDDSDEGFMSLDKGIDA 123

Query:   114 NELQKQSDASELRTEVSNSGRDVKTSFASHKKFQNHNRMTNNNILLDAAKQEFGEEISCX 173
             + L      S+++  +  +G D  T F  H + +N   M ++ +  D +  E   E+   
Sbjct:   124 SRLDHSVLGSKVKANIKETGED--TDF--HLRDKNDADMYSD-VSCDDSNDESSNEVR-S 177

Query:   174 XXXXXXXXXXXXXXXXXXXMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKK 233
                                ++  Q K    +A K  QDAE++A++ L  RA++A +++KK
Sbjct:   178 TGYKSTRQHKQAYDKIKLHLEAEQAKSSK-EACKTTQDAEHMAIRYLGLRAYSAADLKKK 236

Query:   234 LNGKKFPSHVIEAVITDFQSRGLINDSLXXXXXXXXXXXXXXXGPRRIKQ 283
             L GKK+P  V++ VI DFQ RG +NDSL               GPRRIKQ
Sbjct:   237 LIGKKYPIEVVDKVIDDFQIRGFVNDSLYAESFTRSRWSSLSWGPRRIKQ 286


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       250   0.00080  114 3  11 23  0.50    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.76u 0.16s 25.92t   Elapsed:  00:00:01
  Total cpu time:  25.76u 0.16s 25.92t   Elapsed:  00:00:01
  Start:  Thu May  9 16:51:10 2013   End:  Thu May  9 16:51:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006282 "regulation of DNA repair" evidence=IEA;ISS

GO:0007126 "meiosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I003359 hypothetical protein (376 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
PRK00117	157	PRK00117, recX, recombination regulator RecX; Revi	5e-15
pfam02631	115	pfam02631, RecX, RecX family	5e-12
COG2137	174	COG2137, OraA, Uncharacterized protein conserved i	8e-12
PRK14135	263	PRK14135, recX, recombination regulator RecX; Prov	8e-06

>gnl|CDD|234646 PRK00117, recX, recombination regulator RecX; Reviewed

 Score = 70.3 bits (173), Expect = 5e-15
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
           A   A++LLA R  +  E+R+KL  K F   VIEAV+   +  GL++D  +AES+ RSR 
Sbjct: 13  ARARALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSR- 71

Query: 272 SSASWGPRRIKQ 283
           +   +GPRRI+Q
Sbjct: 72  ARKGYGPRRIRQ 83

Length = 157

>gnl|CDD|202322 pfam02631, RecX, RecX family

 Score = 61.0 bits (149), Expect = 5e-12
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 237 KKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
           K F   VIEAV+   +  G ++D  +AES+ RSR  +   GPRRI+Q
Sbjct: 3   KGFSEEVIEAVLERLKELGYLDDERFAESFVRSRLRTKGKGPRRIRQ 49

RecX is a putative bacterial regulatory protein. The gene encoding RecX is found downstream of recA, and is thought to interact with the RecA protein. Length = 115

>gnl|CDD|225048 COG2137, OraA, Uncharacterized protein conserved in bacteria [General function prediction only]

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 5/88 (5%)

Query: 196 LQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRG 255
           L++     Q AK      N A++LL+ R  +  E+R+KL  K+F   +IE VI      G
Sbjct: 10  LEEISRSDQYAKGL----NRALRLLSRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEG 65

Query: 256 LINDSLYAESYSRSRWSSASWGPRRIKQ 283
            ++D+ +AE+Y RSR S    GP R+KQ
Sbjct: 66  YLDDTRFAEAYIRSR-SRKGKGPARLKQ 92

Length = 174

>gnl|CDD|237619 PRK14135, recX, recombination regulator RecX; Provisional

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 190 AEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVIT 249
            E+++ +Q  D   Q +K +    NLA+  L+ +  T  E+R  L   +    +I  VI 
Sbjct: 44  EEDLEEIQYAD---QVSKGK----NLALYYLSYQMRTEKEVRDYLKKHEISEEIISEVID 96

Query: 250 DFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
             +    I+D  YAESY R+  ++   GPR IKQ
Sbjct: 97  KLKEEKYIDDKEYAESYVRTNINTGDKGPRVIKQ 130

Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PRK14134	283	recX recombination regulator RecX; Provisional	99.96
PRK14135	263	recX recombination regulator RecX; Provisional	99.95
COG2137	174	OraA Uncharacterized protein conserved in bacteria	99.81
PRK00117	157	recX recombination regulator RecX; Reviewed	99.73
PRK14136	309	recX recombination regulator RecX; Provisional	99.71
PRK14137	195	recX recombination regulator RecX; Provisional	99.69
PF02631	121	RecX: RecX family; InterPro: IPR003783 RecX is a p	99.32
PRK14135	263	recX recombination regulator RecX; Provisional	97.96
PRK00117	157	recX recombination regulator RecX; Reviewed	96.65
PF02631	121	RecX: RecX family; InterPro: IPR003783 RecX is a p	95.38
PF07553	48	Lipoprotein_Ltp: Host cell surface-exposed lipopro	90.88
COG2137	174	OraA Uncharacterized protein conserved in bacteria	90.82
PRK14136	309	recX recombination regulator RecX; Provisional	87.51
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	82.12
PRK14137	195	recX recombination regulator RecX; Provisional	80.9

>PRK14134 recX recombination regulator RecX; Provisional

Probab=99.96  E-value=1.3e-29  Score=236.03  Aligned_cols=128  Identities=18%  Similarity=0.252  Sum_probs=121.0

Q ss_pred             cccchhhccCcccccceEEecCCccchhh--hHHHHhcccCCCCcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 023264          140 FASHKKFQNHNRMTNNNILLDAAKQEFGE--EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAV  217 (285)
Q Consensus       140 ~~~~~~~k~~~~r~~~NIyiDg~efafsv--dvlik~~L~kG~~~~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL  217 (285)
                      |..|+.|++++.||  |||||| +|+|+|  +++++|+|.+|   ++||++++++|.      ..    +.+.+|++.||
T Consensus         5 ItkIe~qk~~k~R~--~i~ld~-~~af~v~~~~l~~~~L~kG---~eld~e~~~ei~------~~----~~~~~a~~~AL   68 (283)
T PRK14134          5 ITKIEVQKRNKDRV--NVYIDE-EFAFACSAELVYYHNLKKG---KVIDVNSLNDII------KE----DNYIKCKGYAL   68 (283)
T ss_pred             EEEEeeecCCCCeE--EEEecC-CeEEEecHHHHHHhCCcCC---CCcCHHHHHHHH------HH----HHHHHHHHHHH
Confidence            45689999999999  999999 999999  99999999999   999999999998      22    46789999999


Q ss_pred             HHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          218 KLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       218 ~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      +||++|+||++||++||.++||++++|+.||++|+++|||||.+||++||+++..  ++||++|+++|
T Consensus        69 ~~Ls~r~rSe~Elr~KL~~k~~~~~~Ie~vI~~L~e~~yldD~ryA~~yv~~~~~--~~G~~~I~~eL  134 (283)
T PRK14134         69 KYIEKSYKTEKQIKEKLYLKEYDEDAVNRVIRFLKEYNFIDDDKYCDMYIREKIN--SYGRNKIKYTL  134 (283)
T ss_pred             HHhccCcchHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--hhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999985  79999999987

>PRK14135 recX recombination regulator RecX; Provisional

Probab=99.95  E-value=2e-27  Score=215.95  Aligned_cols=128  Identities=28%  Similarity=0.345  Sum_probs=121.2

Q ss_pred             cchhhccCcccccceEEecCCccchhh--hHHHHhcccCCCCcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 023264          142 SHKKFQNHNRMTNNNILLDAAKQEFGE--EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKL  219 (285)
Q Consensus       142 ~~~~~k~~~~r~~~NIyiDg~efafsv--dvlik~~L~kG~~~~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~l  219 (285)
                      -|++|++++.||  |||||| +|+|+|  +++++|+|.+|   ++||++++++|..      .    +...+|+++|++|
T Consensus         3 ~i~~~~~~~~r~--~v~ld~-~~~~~~~~~~~~~~~L~~g---~~l~~~~~~~i~~------~----~~~~~a~~~Al~~   66 (263)
T PRK14135          3 KITVQKKNKERY--NIFLDE-KYAFSVDEDTLVKFMLKKG---KELDEEDLEEIQY------A----DQVSKGKNLALYY   66 (263)
T ss_pred             eeeecccCCceE--EEEEcC-CeEEEeeHHHHHHhcCcCC---CcCCHHHHHHHHH------H----HHHHHHHHHHHHH
Confidence            578999999999  999999 999999  99999999999   9999999999982      2    3568999999999


Q ss_pred             HhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       220 LS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      |++|+||+.||++||.++|+++++|+.||++|++.|||||.+||+.|++++++.+++||++|+++|
T Consensus        67 L~~r~~s~~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~~g~~~I~~kL  132 (263)
T PRK14135         67 LSYQMRTEKEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGDKGPRVIKQKL  132 (263)
T ss_pred             hhhccccHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987789999999986

>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]

Probab=99.81  E-value=7.9e-20  Score=160.84  Aligned_cols=92  Identities=35%  Similarity=0.482  Sum_probs=85.7

Q ss_pred             CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHH
Q 023264          183 FEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY  262 (285)
Q Consensus       183 ~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rY  262 (285)
                      ++++++.+.++.      ..    +....++++||++|++|+||++||++||+++|+++++|+.||++|.+.|||||.+|
T Consensus         3 ~~~~~~~~~~~~------~~----~~~~~~~~~Al~~Ls~R~rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~f   72 (174)
T COG2137           3 KELDDEDLEEIS------RS----DQYAKGLNRALRLLSRRDRSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRF   72 (174)
T ss_pred             cccchhhhhhhh------hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHH
Confidence            888999999887      23    35689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCcchHHHhccC
Q 023264          263 AESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       263 AesyVrsr~~~k~kGprrIrqEL  285 (285)
                      |++|++++.+ +++||.+|+|+|
T Consensus        73 Ae~~i~~r~~-~g~G~~rl~qeL   94 (174)
T COG2137          73 AEAYIRSRSR-KGKGPARLKQEL   94 (174)
T ss_pred             HHHHHHHHHh-cccChHHHHHHH
Confidence            9999999998 559999999987

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=99.73  E-value=8.1e-18  Score=142.66  Aligned_cols=78  Identities=41%  Similarity=0.692  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       207 ~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      +....|+++|++||++|+||++||++||.++|+++++|+.||++|.+.|||||.+||+.|++++ ..+++|+++|+++|
T Consensus         8 ~~~~~a~~~al~~L~~r~~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~-~~~~~g~~~I~~~L   85 (157)
T PRK00117          8 RMYASARARALRLLARREHSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSR-ARKGYGPRRIRQEL   85 (157)
T ss_pred             cHHHHHHHHHHHHHccchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCchHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999 44899999999987

>PRK14136 recX recombination regulator RecX; Provisional

Probab=99.71  E-value=2e-17  Score=156.47  Aligned_cols=77  Identities=23%  Similarity=0.361  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       207 ~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      .....++++||+||++|+||+.||++||+++||++++|+.||++|+++|||||.+||++||+.+..  +|||.+|+++|
T Consensus       159 ~~~~~lk~kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~--kkGp~rIrqEL  235 (309)
T PRK14136        159 RPARSLKGRALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRAS--RVGSARIVSEL  235 (309)
T ss_pred             ccHHHHHHHHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhh--chhHHHHHHHH
Confidence            355789999999999999999999999999999999999999999999999999999999998764  69999999987

>PRK14137 recX recombination regulator RecX; Provisional

Probab=99.69  E-value=5.2e-17  Score=145.01  Aligned_cols=74  Identities=28%  Similarity=0.365  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          208 ARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       208 ~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      ...+++++|++||++|+||++||++||.++||++++|+.||++|+++|||||.+||+.|..    .++|||++|+++|
T Consensus        38 ~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~~~~----~k~~Gp~rI~~eL  111 (195)
T PRK14137         38 AREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQELGYQDDAQVARAENS----RRGVGALRVRQTL  111 (195)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH----hcCchHHHHHHHH
Confidence            3468999999999999999999999999999999999999999999999999999999832    2689999999987

>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []

Probab=99.32  E-value=1.4e-12  Score=106.54  Aligned_cols=52  Identities=46%  Similarity=0.684  Sum_probs=45.2

Q ss_pred             HhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          234 LNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       234 L~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      |.++||++++|+.||++|+++|||||.+||++|++++++.+++||++|+++|
T Consensus         1 L~~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L   52 (121)
T PF02631_consen    1 LKRKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKL   52 (121)
T ss_dssp             HHHTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred             CcccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHH
Confidence            7889999999999999999999999999999999999988999999999986

The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.

>PRK14135 recX recombination regulator RecX; Provisional

Probab=97.96  E-value=9.7e-06  Score=74.13  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHH-HHHHHHHhhhhc-CCcchHHHhccC
Q 023264          208 ARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSL-YAESYSRSRWSS-ASWGPRRIKQGW  285 (285)
Q Consensus       208 ~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~r-YAesyVrsr~~~-k~kGprrIrqEL  285 (285)
                      ...-|...+-.++..+.++..+|+++|.++|++++.|+.||+.|.+.+++||.+ +|+.+.+..... ...++.+|.+.|
T Consensus       106 D~~~a~~~~~~~~~~~~~g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k~~~~~~~~~~~~~k~Ki~~~L  185 (263)
T PRK14135        106 DKEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEKLLKKYQKLPFKALKQKIIQSL  185 (263)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            456788888888888889999999999999999999999999999999999974 777766654210 113456666554

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=96.65  E-value=0.0084  Score=50.95  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264          210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS  272 (285)
Q Consensus       210 ~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~  272 (285)
                      .-|...+-.. ..+.++...|+++|.++|++.+.|+.+++.+.    .|+.+.|...++.+..
T Consensus        62 ~~a~~~~~~~-~~~~~g~~~I~~~L~~kGi~~~~I~~~l~~~~----~d~~e~a~~~~~k~~~  119 (157)
T PRK00117         62 RFAESFVRSR-ARKGYGPRRIRQELRQKGVDREIIEEALAELD----IDWEELARELARKKFR  119 (157)
T ss_pred             HHHHHHHHHH-HhCCchHHHHHHHHHHcCCCHHHHHHHHHHcC----ccHHHHHHHHHHHHcC
Confidence            4444444444 55788999999999999999999999999874    7888889998888765

>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []

Probab=95.38  E-value=0.14  Score=41.72  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhc
Q 023264          208 ARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSS  273 (285)
Q Consensus       208 ~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~  273 (285)
                      ...-|..++-..+..+.++..-|+++|+++|++++.|+.+++      -+|+...|...++.+...
T Consensus        26 D~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~~~l~------~~~~~e~a~~~~~kk~~~   85 (121)
T PF02631_consen   26 DERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIEEALE------EYDEEEEALELAEKKYRR   85 (121)
T ss_dssp             HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHHHHHT------CS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHHHHHH------HhhHHHHHHHHHHHHHhc
Confidence            445677777777878999999999999999999999999998      566666688888887763

The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.

>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function

Probab=90.88  E-value=0.58  Score=33.70  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHhcC---CCCHHHHHHHHHHH
Q 023264          210 QDAENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDF  251 (285)
Q Consensus       210 ~kA~~~AL~lLS~RdrS~~ELr~KL~~K---g~~ee~Ie~VIerL  251 (285)
                      +.|...|-.|+.....|..+|.+.|...   +|++++++.+|+-|
T Consensus         4 ~~Al~~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~l   48 (48)
T PF07553_consen    4 KNALKKAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDHL   48 (48)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHHHHHHcC
Confidence            5688999999999999999999999976   89999999999754

>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]

Probab=90.82  E-value=0.92  Score=40.51  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             EecCCccchhh-hHHHHhcccCCC-----C--cCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhcc--cc-
Q 023264          158 LLDAAKQEFGE-EISCEHGLFEES-----E--VFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRA--FT-  226 (285)
Q Consensus       158 yiDg~efafsv-dvlik~~L~kG~-----~--~~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~Rd--rS-  226 (285)
                      |+|++.||-+. ..-+..|  +|.     +  .+-|+++.+++++  ++...    .+....|...+...+.+..  .. 
T Consensus        66 ~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi~~~~Ie~aL--~~~~~----~~~~~~a~~~~~kk~~~~~~~~~~  137 (174)
T COG2137          66 YLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGIDDEIIEEAL--ELIDE----EDEQERARKVLRKKFKRENKPPDK  137 (174)
T ss_pred             cccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCCCHHHHHHHH--hccch----HHHHHHHHHHHHHHhCccccCcch
Confidence            48887888665 3333333  332     1  1458999999888  22222    2456777788877776652  33 


Q ss_pred             --HHHHHHHHhcCCCCHHHHHHHHHHHHHCC
Q 023264          227 --AVEMRKKLNGKKFPSHVIEAVITDFQSRG  255 (285)
Q Consensus       227 --~~ELr~KL~~Kg~~ee~Ie~VIerLee~G  255 (285)
                        ..-+.++|..+||+.++|..++..+.+..
T Consensus       138 ~~k~Ki~r~L~~rGFs~~~i~~~l~~~~~~~  168 (174)
T COG2137         138 KEKAKIQRFLLRRGFSYEVIKEALNEAEEEE  168 (174)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHhhhcc
Confidence              45688899999999999999999887654

>PRK14136 recX recombination regulator RecX; Provisional

Probab=87.51  E-value=2.7  Score=40.95  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=35.2

Q ss_pred             cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264          224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS  272 (285)
Q Consensus       224 drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~  272 (285)
                      .+...-|+..|++||++++.|+.+|+.+.    .|+..-|...++.++.
T Consensus       225 kkGp~rIrqELrQKGId~eLIEqALeeie----EDE~E~A~~L~eKK~~  269 (309)
T PRK14136        225 RVGSARIVSELKRHAVGDALVESVGAQLR----ETEFERAQAVWRKKFG  269 (309)
T ss_pred             chhHHHHHHHHHHcCCCHHHHHHHHHhcc----HhHHHHHHHHHHHHhc
Confidence            37889999999999999999999998653    2555666666666653

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=82.12  E-value=3.8  Score=28.76  Aligned_cols=41  Identities=17%  Similarity=0.397  Sum_probs=34.6

Q ss_pred             HHHHHHHhhcc---ccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264          214 NLAVKLLATRA---FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI  257 (285)
Q Consensus       214 ~~AL~lLS~Rd---rS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL  257 (285)
                      -.+|.+|...+   -|..||.+.|.   ++...+..+|.+|++.|||
T Consensus         8 ~~vL~~l~~~~~~~~t~~~la~~l~---~~~~~vs~~v~~L~~~Glv   51 (62)
T PF12802_consen    8 FRVLMALARHPGEELTQSELAERLG---ISKSTVSRIVKRLEKKGLV   51 (62)
T ss_dssp             HHHHHHHHHSTTSGEEHHHHHHHHT---S-HHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHC---cCHHHHHHHHHHHHHCCCE
Confidence            35677777777   59999999885   8999999999999999998

...

>PRK14137 recX recombination regulator RecX; Provisional

Probab=80.90  E-value=4.9  Score=36.38  Aligned_cols=66  Identities=18%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Q 023264          183 FEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSR  254 (285)
Q Consensus       183 ~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~---RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~  254 (285)
                      .-|+++.+++..  .+.+..    +....|...+-+.+..   ......-+.++|..+||+.++|..||..+.+.
T Consensus       114 KGI~~~lI~~al--~~~d~e----de~e~a~~l~~KK~~~~~~~~~~k~K~~~~L~rRGFs~~~I~~al~~~~~~  182 (195)
T PRK14137        114 RGVEETLIEETL--AARDPQ----EEQQEARNLLERRWSSFARKRDPRASAYAFLARRGFSGAVIWPAIREVAAL  182 (195)
T ss_pred             cCCCHHHHHHHH--HhcCch----hHHHHHHHHHHHhccccCcchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            447888888766  221111    2233344433333321   11223558889999999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	2e-18
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	3e-18
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	2e-16
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	3e-13
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius} Length = 177

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 24/81 (29%), Positives = 36/81 (44%)

Query: 203 LQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY 262
           ++ A       N A+  L+ +  T  E+  KL         I  +I       LIND  Y
Sbjct: 11  IKLADDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70

Query: 263 AESYSRSRWSSASWGPRRIKQ 283
           AESY R+  +++  GP+ IK 
Sbjct: 71  AESYVRTMMNTSDKGPKVIKL 91

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri} Length = 221

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 13/116 (11%)

Query: 168 EEISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTA 227
           E +  +  L + +E+ E+      ++  +   D           A +  +  L+ +  T 
Sbjct: 32  ESVLIQFRLMKGTELDEK------QIAAIATADQQ-------AKAYSRMLDYLSYQMRTE 78

Query: 228 VEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQ 283
            ++ KKL     P   +E ++   + + LI+D  YA SY R+  ++   GP  I+Q
Sbjct: 79  SDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQ 134

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} Length = 162

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAES 265
               Q     A+ LL  R  +  E+ +KL  +       +A +      G  +D  +A S
Sbjct: 13  RFKEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAAS 72

Query: 266 YSRSRWSSASWGPRRIKQ 283
             R+R +S+ +GP  I+ 
Sbjct: 73  VVRNR-ASSGYGPLHIRA 89

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} Length = 159

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 208 ARQDAENLAVKLLATRAFTAVEMRKKLNGKK----------FPSHVIEAVITDFQSRGLI 257
           A     + AV++LA R  +  E+R+KL                +   E VI      G +
Sbjct: 3   AYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYL 62

Query: 258 NDSLYAESYSRSRWSSASWGPRRIKQ 283
           +DS +   +  SR     +GP RI+Q
Sbjct: 63  DDSRFVARFIASRSRK-GYGPARIRQ 87

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 14/44 (31%)

Query: 254 RGLI-NDSLYAESYSR-----SRWSSASWGPR------RIKQGW 285
            G    D +Y+ES        +RW S SW  +       I  GW
Sbjct: 631 HGTFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAII--GW 672

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 52/359 (14%), Positives = 95/359 (26%), Gaps = 113/359 (31%)

Query: 8   VGLKISPRLEFRGLLIPWISKNNAISCVKGRDYSSSFPVRY-----VPKKSVKIKESENS 62
           V   +    +F  L+ P  ++    S +  R Y       Y       K +V   +    
Sbjct: 83  VEEVLRINYKF--LMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---- 135

Query: 63  VPVKGLERN--ELRKQPD-------ASG---LRTEV-SNSGRDVKKPLKIY--------- 100
            P   L +   ELR   +        SG   +  +V  +     K   KI+         
Sbjct: 136 -PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 101 ---------------EPKNSVPVNGLQRNELQKQSDASELRTEVSNSG--------RDVK 137
                          +P  +   +     +L+  S  +ELR  + +           +V+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 138 TSFASH-KKFQNHNRM---TNNNILLDAAKQEFGEEISCEHGL--FEESE---------- 181
              A     F    ++   T    + D         IS +H        E          
Sbjct: 255 N--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 182 --VFEEPQEV-----------AEEMKI-LQQKDFYLQAAKARQDAENLAVKLLATRAFTA 227
               + P+EV           AE ++  L   D +        D     ++  +      
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC---DKLTTIIES-SLNVLEP 368

Query: 228 VEMRK---KL----NGKKFPSHVI------------EAVITDFQSRGLINDSLYAESYS 267
            E RK   +L         P+ ++              V+       L+       + S
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.0 bits (87), Expect = 9e-04
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 21/45 (46%)

Query: 69  ERNELRKQPDASGLRTEVSNSGRDVKKPLKIYEPKNSVP---VNG 110
           E+  L+K          +  S       LK+Y   +S P   +  
Sbjct: 18  EKQALKK----------LQAS-------LKLYAD-DSAPALAIKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	99.97
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	99.87
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	99.79
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	99.78
3c1d_A	159	Protein ORAA, regulatory protein RECX; tandem repe	94.67
3dfg_A	162	Xcrecx, regulatory protein RECX; RECX RECA, homolo	93.16
3e3v_A	177	Regulatory protein RECX; PSI-II, NYSGXRC, structur	89.72
3d5l_A	221	Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa	89.26
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	84.0
1y0u_A	96	Arsenical resistance operon repressor, putative; s	80.89
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	80.82
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	80.66
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	80.64
2doa_A	104	RNA polymerase II elongation factor ELL; C19ORF17,	80.44
3jth_A	98	Transcription activator HLYU; transcription factor	80.04

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=99.97  E-value=2.9e-30  Score=230.22  Aligned_cols=127  Identities=23%  Similarity=0.306  Sum_probs=118.6

Q ss_pred             cchhhccCcccccceEEecCCccchhh--hHHHHhcccCCCCcCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 023264          142 SHKKFQNHNRMTNNNILLDAAKQEFGE--EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKL  219 (285)
Q Consensus       142 ~~~~~k~~~~r~~~NIyiDg~efafsv--dvlik~~L~kG~~~~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~l  219 (285)
                      .|+. ++++++|  |||||| +|+|+|  +++++|+|.+|   ++||++++++|..      .    +...+|+++||+|
T Consensus         8 ~i~~-~k~k~r~--~I~ld~-~~~f~v~~~~l~~~~L~kg---~el~~e~~~~i~~------~----~~~~~a~~~Al~~   70 (221)
T 3d5l_A            8 KIEA-QKRKGRY--NIYLDG-KYAFPVAESVLIQFRLMKG---TELDEKQIAAIAT------A----DQQAKAYSRMLDY   70 (221)
T ss_dssp             EEEE-CSSTTEE--EEEETT-EEEEEEEHHHHHHTTCCTT---CEECHHHHHHHHH------H----HHHHHHHHHHHHH
T ss_pred             EEEE-ccCCCeE--EEEEcC-CeeEEeeHHHHHHcCCcCC---CCCCHHHHHHHHH------h----HHHHHHHHHHHHH
Confidence            3455 6778898  999999 999999  99999999999   9999999999982      2    3568999999999


Q ss_pred             HhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       220 LS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      |++|+||+.||++||.++|+++++|+.||++|++.|||||.+||++||+++++.++|||++|+++|
T Consensus        71 Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL  136 (221)
T 3d5l_A           71 LSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHL  136 (221)
T ss_dssp             HTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             hccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988899999999986

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=99.87  E-value=1.2e-22  Score=175.68  Aligned_cols=93  Identities=28%  Similarity=0.371  Sum_probs=76.5

Q ss_pred             CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHH
Q 023264          183 FEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY  262 (285)
Q Consensus       183 ~ELdee~leeI~~~~q~~~~eq~~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rY  262 (285)
                      ||||++++++|..      +    +...+|+++||+||++|+||+.||++||.++|+++++|+.||++|++.|||||.+|
T Consensus         1 ~el~~e~~~~i~~------~----~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf   70 (177)
T 3e3v_A            1 MSLDENLIEEIKL------A----DDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY   70 (177)
T ss_dssp             ------------C------H----HHHHHHHHHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred             CcCCHHHHHHHHH------H----HHHHHHHHHHHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            6899999999982      2    46789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCcchHHHhccC
Q 023264          263 AESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       263 AesyVrsr~~~k~kGprrIrqEL  285 (285)
                      |++||+++++.++|||++|+++|
T Consensus        71 A~~~vr~~~~~~~~G~~~I~~eL   93 (177)
T 3e3v_A           71 AESYVRTMMNTSDKGPKVIKLNL   93 (177)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHH
Confidence            99999999987789999999987

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=99.79  E-value=1.1e-19  Score=155.09  Aligned_cols=78  Identities=24%  Similarity=0.378  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcchHHHhccC
Q 023264          207 KARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQGW  285 (285)
Q Consensus       207 ~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGprrIrqEL  285 (285)
                      .+...|+++||+||++|+||+.||++||.++|+++++|+.||++|++.|||||.+||++||++++. ++|||++|+++|
T Consensus        14 ~~~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~~~G~~~I~~eL   91 (162)
T 3dfg_A           14 FKEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-SGYGPLHIRAEL   91 (162)
T ss_dssp             ---CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-ccccHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999997 799999999987

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}

Probab=99.78  E-value=5.1e-19  Score=150.12  Aligned_cols=76  Identities=29%  Similarity=0.420  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHhcC-----C-----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhhcCCcch
Q 023264          209 RQDAENLAVKLLATRAFTAVEMRKKLNGK-----K-----FPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGP  278 (285)
Q Consensus       209 ~~kA~~~AL~lLS~RdrS~~ELr~KL~~K-----g-----~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~~k~kGp  278 (285)
                      ..+|+++||+||++|+||+.||++||.++     |     +++++|+.||++|++.|||||.+||++||+++++ ++|||
T Consensus         4 ~~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~-~g~G~   82 (159)
T 3c1d_A            4 YARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR-KGYGP   82 (159)
T ss_dssp             HHHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH-TTCCH
T ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh-CCccH
Confidence            47899999999999999999999999996     8     9999999999999999999999999999999997 78999


Q ss_pred             HHHhccC
Q 023264          279 RRIKQGW  285 (285)
Q Consensus       279 rrIrqEL  285 (285)
                      ++|+++|
T Consensus        83 ~~I~~eL   89 (159)
T 3c1d_A           83 ARIRQEL   89 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}

Probab=94.67  E-value=0.18  Score=42.03  Aligned_cols=78  Identities=10%  Similarity=0.153  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHH
Q 023264          185 EPQEVAEEMKILQQKDFYLQA--AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLY  262 (285)
Q Consensus       185 Ldee~leeI~~~~q~~~~eq~--~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rY  262 (285)
                      .+++.++++..     ...+.  .+...-|..++-..+. +.++..-|++.|++||++++.|+.+++.+..    |...-
T Consensus        44 ~~~~~i~~vl~-----~l~~~g~ldD~rfA~~~v~~~~~-~g~G~~~I~~eL~~KGI~~~~i~~al~~~~~----d~~~~  113 (159)
T 3c1d_A           44 ATAEDYERVIA-----WCHEHGYLDDSRFVARFIASRSR-KGYGPARIRQELNQKGISREATEKAMREADI----DWAAL  113 (159)
T ss_dssp             CCHHHHHHHHH-----HHHHTTSCCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHTTCCHHHHHHHHHHHCC----CHHHH
T ss_pred             CCHHHHHHHHH-----HHHHcCCcCHHHHHHHHHHHHHh-CCccHHHHHHHHHHcCCCHHHHHHHHHHcCH----hHHHH
Confidence            57777777662     11111  1123344444444444 5689999999999999999999999988743    66777


Q ss_pred             HHHHHHhhhh
Q 023264          263 AESYSRSRWS  272 (285)
Q Consensus       263 AesyVrsr~~  272 (285)
                      |..+++.++.
T Consensus       114 a~~l~~kk~~  123 (159)
T 3c1d_A          114 ARDQATRKYG  123 (159)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHcC
Confidence            8787776654

>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}

Probab=93.16  E-value=0.15  Score=42.80  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264          211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS  272 (285)
Q Consensus       211 kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~  272 (285)
                      -|..++-..+. +.++..-|++.|.+||++++.|+.+++.+.    .|...-|...++.+..
T Consensus        69 fA~~~v~~~~~-~~~G~~~I~~eL~~KGI~~~~I~~al~~~~----~de~e~a~~l~~Kk~~  125 (162)
T 3dfg_A           69 FAASVVRNRAS-SGYGPLHIRAELGTHGLDSDAVSAAMATFE----GDWTENALDLIRRRFG  125 (162)
T ss_dssp             HHHHHHHHHHT-TTCCHHHHHHHHHHTTCCHHHHHHHHTTCC----SCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-ccccHHHHHHHHHHcCCCHHHHHHHHHhCc----HhHHHHHHHHHHHhcC
Confidence            34444444444 578999999999999999999999998763    3666777777776654

>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}

Probab=89.72  E-value=3.4  Score=34.98  Aligned_cols=62  Identities=11%  Similarity=0.124  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHHhhhhhHHHHH--HHHHHHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHH
Q 023264          184 EEPQEVAEEMKILQQKDFYLQA--AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITD  250 (285)
Q Consensus       184 ELdee~leeI~~~~q~~~~eq~--~~~~~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIer  250 (285)
                      ..+++.++++..     ...+.  .+...-|...+-..+....++..-|++.|++||++++.|+.+++.
T Consensus        46 g~~~~~ie~vl~-----~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~  109 (177)
T 3e3v_A           46 DIHEDYISEIIN-----KLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALIL  109 (177)
T ss_dssp             TCCHHHHHHHHH-----HHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTT
T ss_pred             CCCHHHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            356777776662     11111  123345555555566666799999999999999999999999974

>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}

Probab=89.26  E-value=0.75  Score=40.38  Aligned_cols=60  Identities=15%  Similarity=0.137  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhh
Q 023264          210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS  272 (285)
Q Consensus       210 ~kA~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD~rYAesyVrsr~~  272 (285)
                      .-|...+-..+..+.++..-|++.|++||++++.|+.+++.+.+   -|...-|...++.++.
T Consensus       112 rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~---~~e~e~a~~l~~Kk~~  171 (221)
T 3d5l_A          112 AYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTP---EVQAELAKKLALKLFR  171 (221)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCH---HHHHHHHHHHHHHHHh
Confidence            44555555566667899999999999999999999999886511   0112334555555543

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=84.00  E-value=2  Score=30.95  Aligned_cols=45  Identities=16%  Similarity=0.297  Sum_probs=38.2

Q ss_pred             HHHHHHHhh---ccccHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCCC
Q 023264          214 NLAVKLLAT---RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN  258 (285)
Q Consensus       214 ~~AL~lLS~---RdrS~~ELr~KL~~K--g~~ee~Ie~VIerLee~GyLD  258 (285)
                      ...|.+|..   ...|..||.+.|.++  +++...|-..|+.|++.|+|.
T Consensus        20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~   69 (83)
T 2fu4_A           20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT   69 (83)
T ss_dssp             HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence            455667765   468999999999877  789999999999999999984

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=80.89  E-value=3.7  Score=30.38  Aligned_cols=43  Identities=9%  Similarity=0.183  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCCH
Q 023264          213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND  259 (285)
Q Consensus       213 ~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLDD  259 (285)
                      ....|.+| ....|..||.+.|   |++...|-..|..|++.|+|.-
T Consensus        33 r~~Il~~L-~~~~~~~eLa~~l---~is~~tv~~~L~~L~~~Glv~~   75 (96)
T 1y0u_A           33 RRKILRML-DKGRSEEEIMQTL---SLSKKQLDYHLKVLEAGFCIER   75 (96)
T ss_dssp             HHHHHHHH-HTTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence            34577788 7889999999999   7999999999999999999953

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=80.82  E-value=3.6  Score=29.82  Aligned_cols=44  Identities=16%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhhc-cccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264          212 AENLAVKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN  258 (285)
Q Consensus       212 A~~~AL~lLS~R-drS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD  258 (285)
                      .....|.+|... ..|..||.+.|   |++...|...|..|++.|||.
T Consensus        25 ~~~~il~~l~~~~~~s~~ela~~l---~is~~tvs~~l~~L~~~glv~   69 (99)
T 3cuo_A           25 KRLLILCMLSGSPGTSAGELTRIT---GLSASATSQHLARMRDEGLID   69 (99)
T ss_dssp             HHHHHHHHHTTCCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence            345567778776 78999999999   699999999999999999994

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=80.66  E-value=3.4  Score=29.43  Aligned_cols=43  Identities=14%  Similarity=0.324  Sum_probs=36.4

Q ss_pred             HHHHHHHHhh--ccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264          213 ENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN  258 (285)
Q Consensus       213 ~~~AL~lLS~--RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD  258 (285)
                      ....|.+|+.  ...|-.||.+.|   |++...|...|..|++.|||.
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~l---glsr~tv~~~l~~L~~~G~I~   56 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKC---QVPKKTLNQVLYRLKKEDRVS   56 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHH---CSCHHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEe
Confidence            3457778875  468999999988   689999999999999999984

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=80.64  E-value=2.8  Score=32.23  Aligned_cols=45  Identities=4%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             HHHHHHHhhccccHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCCC
Q 023264          214 NLAVKLLATRAFTAVEMRKKLNGK-KFPSHVIEAVITDFQSRGLIN  258 (285)
Q Consensus       214 ~~AL~lLS~RdrS~~ELr~KL~~K-g~~ee~Ie~VIerLee~GyLD  258 (285)
                      -..|.+|+..+.+-.||.+.|.+. +.++..|-.+|.+|++.|||.
T Consensus        12 ~~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~   57 (108)
T 3l7w_A           12 YLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLS   57 (108)
T ss_dssp             HHHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeE
Confidence            457889999999999999999754 789999999999999999994

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81

Probab=80.44  E-value=2.2  Score=34.38  Aligned_cols=47  Identities=17%  Similarity=0.182  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264          212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN  258 (285)
Q Consensus       212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD  258 (285)
                      .+++.+++||-++|+..||..+|.+.|..+...+.+-.-|.+-..++
T Consensus        13 lReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~   59 (104)
T 2doa_A           13 FRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMS   59 (104)
T ss_dssp             HHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEEC
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            56889999999999999999999999999888887777777766663

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=80.04  E-value=3.5  Score=30.43  Aligned_cols=44  Identities=14%  Similarity=0.251  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCCC
Q 023264          212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN  258 (285)
Q Consensus       212 A~~~AL~lLS~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyLD  258 (285)
                      ..-..+.+|...+.|..||.+.|   |++...|-.-|..|++.|+|.
T Consensus        24 ~r~~Il~~L~~~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~   67 (98)
T 3jth_A           24 RRLQILCMLHNQELSVGELCAKL---QLSQSALSQHLAWLRRDGLVT   67 (98)
T ss_dssp             HHHHHHHHTTTSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeE
Confidence            34567888988899999999999   799999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	81.74

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=0.61  Score=32.99  Aligned_cols=34  Identities=12%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             hccccHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCC
Q 023264          222 TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI  257 (285)
Q Consensus       222 ~RdrS~~ELr~KL~~Kg~~ee~Ie~VIerLee~GyL  257 (285)
                      -.-.+..||..+|.  +++...|.+++++|...|+|
T Consensus        21 ~eGi~~~el~~~l~--~~~~~~i~~aid~L~~eG~I   54 (69)
T d1dpua_          21 PEGLNFQDLKNQLK--HMSVSSIKQAVDFLSNEGHI   54 (69)
T ss_dssp             TTTEEHHHHHHHST--TSCHHHHHHHHHHHHHTTSE
T ss_pred             ccCcCHHHHHHHcc--CCCHHHHHHHHHHHHhCCce
Confidence            34467889999995  79999999999999999986