Citrus Sinensis ID: 023283
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 284 | ||||||
| 255537695 | 305 | aldose 1-epimerase, putative [Ricinus co | 0.869 | 0.809 | 0.814 | 1e-119 | |
| 225454434 | 312 | PREDICTED: putative glucose-6-phosphate | 0.869 | 0.791 | 0.801 | 1e-114 | |
| 357481487 | 304 | Apospory-associated protein C [Medicago | 0.866 | 0.809 | 0.798 | 1e-113 | |
| 449521465 | 304 | PREDICTED: putative glucose-6-phosphate | 0.869 | 0.812 | 0.793 | 1e-113 | |
| 255541784 | 317 | aldose 1-epimerase, putative [Ricinus co | 0.869 | 0.779 | 0.797 | 1e-113 | |
| 388509736 | 304 | unknown [Medicago truncatula] | 0.866 | 0.809 | 0.794 | 1e-112 | |
| 449464082 | 304 | PREDICTED: putative glucose-6-phosphate | 0.869 | 0.812 | 0.789 | 1e-112 | |
| 224058411 | 306 | predicted protein [Populus trichocarpa] | 0.866 | 0.803 | 0.804 | 1e-112 | |
| 224064156 | 317 | predicted protein [Populus trichocarpa] | 0.869 | 0.779 | 0.765 | 1e-109 | |
| 356506036 | 317 | PREDICTED: putative glucose-6-phosphate | 0.869 | 0.779 | 0.757 | 1e-107 |
| >gi|255537695|ref|XP_002509914.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549813|gb|EEF51301.1| aldose 1-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/248 (81%), Positives = 227/248 (91%), Gaps = 1/248 (0%)
Query: 1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTS 60
M SGAA D +AAVEV KDRNGI+Q++LRNPRGASA++SLHGGQ LSW+T++GEELLFTS
Sbjct: 1 MNHSGAACDQKAAVEVIKDRNGIDQIILRNPRGASARVSLHGGQVLSWKTDQGEELLFTS 60
Query: 61 TK-AIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYV 119
+K AIFKPPH VRGGIPICFPQFGNRGSLEQHGFAR + WVIDDNPPPL P++S GK YV
Sbjct: 61 SKQAIFKPPHPVRGGIPICFPQFGNRGSLEQHGFARKKIWVIDDNPPPLHPNESNGKAYV 120
Query: 120 DLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISD 179
DLLLKPS++DLKIWPH FEFRLRVSLAADGNL L+SRIRN+NCKP +FSIAYHTYF+ISD
Sbjct: 121 DLLLKPSDDDLKIWPHCFEFRLRVSLAADGNLTLLSRIRNVNCKPLAFSIAYHTYFSISD 180
Query: 180 ISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFV 239
ISEVR+EGLETLDYLDNLCQ+ERFTEQGD LTFESE+DRVYLSSS +AI DHERKRTF+
Sbjct: 181 ISEVRVEGLETLDYLDNLCQKERFTEQGDTLTFESEVDRVYLSSSHVVAIFDHERKRTFL 240
Query: 240 IHKEGLPD 247
+ KEGLPD
Sbjct: 241 VRKEGLPD 248
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454434|ref|XP_002280220.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|297745389|emb|CBI40469.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357481487|ref|XP_003611029.1| Apospory-associated protein C [Medicago truncatula] gi|355512364|gb|AES93987.1| Apospory-associated protein C [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449521465|ref|XP_004167750.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|255541784|ref|XP_002511956.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549136|gb|EEF50625.1| aldose 1-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|388509736|gb|AFK42934.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449464082|ref|XP_004149758.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224058411|ref|XP_002299496.1| predicted protein [Populus trichocarpa] gi|222846754|gb|EEE84301.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224064156|ref|XP_002301394.1| predicted protein [Populus trichocarpa] gi|118487620|gb|ABK95635.1| unknown [Populus trichocarpa] gi|222843120|gb|EEE80667.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356506036|ref|XP_003521794.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 284 | ||||||
| TAIR|locus:2128519 | 306 | AT4G23730 [Arabidopsis thalian | 0.859 | 0.797 | 0.746 | 1.5e-99 | |
| TAIR|locus:2082842 | 317 | AT3G61610 [Arabidopsis thalian | 0.841 | 0.753 | 0.748 | 2.2e-96 | |
| TAIR|locus:2165580 | 312 | AT5G57330 [Arabidopsis thalian | 0.816 | 0.743 | 0.646 | 8.2e-83 | |
| TAIR|locus:2084233 | 306 | AT3G01590 [Arabidopsis thalian | 0.795 | 0.738 | 0.589 | 5.1e-74 | |
| TAIR|locus:2145748 | 306 | AT5G14500 [Arabidopsis thalian | 0.813 | 0.754 | 0.576 | 1.1e-73 | |
| TAIR|locus:2117572 | 318 | AT4G25900 [Arabidopsis thalian | 0.834 | 0.745 | 0.522 | 5.6e-68 | |
| UNIPROTKB|Q9KQJ7 | 296 | VC_2001 "Putative uncharacteri | 0.704 | 0.675 | 0.383 | 2.3e-30 | |
| TIGR_CMR|VC_2001 | 296 | VC_2001 "conserved hypothetica | 0.704 | 0.675 | 0.383 | 2.3e-30 | |
| TAIR|locus:2154870 | 307 | AT5G66530 [Arabidopsis thalian | 0.753 | 0.697 | 0.339 | 8.2e-28 | |
| ASPGD|ASPL0000045178 | 315 | AN10222 [Emericella nidulans ( | 0.788 | 0.711 | 0.330 | 3.5e-27 |
| TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 183/245 (74%), Positives = 211/245 (86%)
Query: 4 SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
SG + R V++ KDRNG +Q++L+NPRGAS KISLHGGQ LSW+T++G+ELLF STKA
Sbjct: 5 SGTGPEKRPTVDLVKDRNGTDQILLQNPRGASVKISLHGGQVLSWKTDKGDELLFNSTKA 64
Query: 64 IFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLL 123
KPPH VRGGIPICFPQFG RGSLEQHGFARN+ W++++NPP L DS GK YVDL+L
Sbjct: 65 NLKPPHPVRGGIPICFPQFGTRGSLEQHGFARNKMWLVENNPPALPSFDSTGKAYVDLVL 124
Query: 124 KPSEED-LKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182
K S+ED ++IWP+SFEF LRVSLA DGNL LISR+RNIN KPFSFSIAYHTYF+ISDISE
Sbjct: 125 KSSDEDTMRIWPYSFEFHLRVSLALDGNLTLISRVRNINSKPFSFSIAYHTYFSISDISE 184
Query: 183 VRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHK 242
VR+EGLETLDYLDN+ RERFTEQGDALTFESEIDRVYL+S D +AI DHERKRTF+I K
Sbjct: 185 VRLEGLETLDYLDNMHDRERFTEQGDALTFESEIDRVYLNSKDVVAIFDHERKRTFLIKK 244
Query: 243 EGLPD 247
EGLPD
Sbjct: 245 EGLPD 249
|
|
| TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2154870 AT5G66530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00026976001 | SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (312 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00034293001 | • | 0.899 | |||||||||
| GSVIVG00030550001 | • | 0.899 | |||||||||
| GSVIVG00022229001 | • | 0.899 | |||||||||
| GSVIVG00016656001 | • | 0.899 | |||||||||
| GSVIVG00015125001 | • | 0.899 | |||||||||
| GSVIVG00014624001 | • | 0.899 | |||||||||
| GSVIVG00014427001 | • | 0.899 | |||||||||
| GSVIVG00010644001 | • | 0.899 | |||||||||
| GSVIVG00010600001 | • | 0.899 | |||||||||
| GSVIVG00038435001 | • | 0.800 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 284 | |||
| cd09020 | 269 | cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate | 3e-86 | |
| pfam01263 | 301 | pfam01263, Aldose_epim, Aldose 1-epimerase | 1e-50 | |
| COG0676 | 287 | COG0676, COG0676, Uncharacterized enzymes related | 3e-47 | |
| cd09025 | 271 | cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, | 3e-25 | |
| cd01081 | 284 | cd01081, Aldose_epim, aldose 1-epimerase superfami | 2e-13 | |
| cd09024 | 288 | cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim | 1e-12 | |
| COG2017 | 308 | COG2017, GalM, Galactose mutarotase and related en | 5e-09 |
| >gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 3e-86
Identities = 100/226 (44%), Positives = 133/226 (58%), Gaps = 12/226 (5%)
Query: 26 VVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNR 85
+VL +P GASA+I+L G Q LSW+ + G++LL+ S +A F A+RGGIP+C+P FG
Sbjct: 2 IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPH 60
Query: 86 G---SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLR 142
G L HGFAR R W + + S+ + V V L L ++E IWPH+FE RL
Sbjct: 61 GPNADLPAHGFARTRLWELLEV------SEDEDGVTVSLELDDTDETRAIWPHAFELRLT 114
Query: 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRER 202
V+L D L L + N KPFSF+ A HTYF +SDI +VR+EGLE YLD L +
Sbjct: 115 VTLGFDT-LELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQRE 173
Query: 203 FTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDW 248
QG A+TF+ E+DRVYL++ + I D R I K G P
Sbjct: 174 -KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSA 218
|
D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269 |
| >gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase | Back alignment and domain information |
|---|
| >gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 | Back alignment and domain information |
|---|
| >gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX | Back alignment and domain information |
|---|
| >gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 284 | |||
| KOG1594 | 305 | consensus Uncharacterized enzymes related to aldos | 100.0 | |
| cd09020 | 269 | D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- | 100.0 | |
| COG0676 | 287 | Uncharacterized enzymes related to aldose 1-epimer | 100.0 | |
| cd09025 | 271 | Aldose_epim_Slr1438 Aldose 1-epimerase, similar to | 100.0 | |
| cd09024 | 288 | Aldose_epim_lacX Aldose 1-epimerase, similar to La | 100.0 | |
| cd09021 | 273 | Aldose_epim_Ec_YphB aldose 1-epimerase, similar to | 100.0 | |
| PF01263 | 300 | Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 | 100.0 | |
| cd01081 | 284 | Aldose_epim aldose 1-epimerase superfamily. Aldose | 100.0 | |
| PRK15172 | 300 | putative aldose-1-epimerase; Provisional | 100.0 | |
| cd09022 | 284 | Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to | 100.0 | |
| cd09019 | 326 | galactose_mutarotase_like galactose mutarotase_lik | 99.97 | |
| COG2017 | 308 | GalM Galactose mutarotase and related enzymes [Car | 99.96 | |
| PLN00194 | 337 | aldose 1-epimerase; Provisional | 99.95 | |
| TIGR02636 | 335 | galM_Leloir galactose mutarotase. Members of this | 99.95 | |
| PRK11055 | 342 | galM galactose-1-epimerase; Provisional | 99.93 | |
| PTZ00485 | 376 | aldolase 1-epimerase; Provisional | 99.9 | |
| KOG1604 | 353 | consensus Predicted mutarotase [Carbohydrate trans | 99.74 | |
| cd09023 | 284 | Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t | 99.73 | |
| PF14486 | 302 | DUF4432: Domain of unknown function (DUF4432); PDB | 99.01 | |
| cd09269 | 293 | deoxyribose_mutarotase deoxyribose mutarotase_like | 98.98 | |
| PF14315 | 274 | DUF4380: Domain of unknown function (DUF4380) | 97.47 | |
| TIGR03593 | 366 | yidC_nterm membrane protein insertase, YidC/Oxa1 f | 93.63 | |
| PF14849 | 270 | YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ | 92.99 | |
| PRK01318 | 521 | membrane protein insertase; Provisional | 90.85 |
| >KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-60 Score=405.25 Aligned_cols=273 Identities=62% Similarity=1.039 Sum_probs=249.5
Q ss_pred CCCCCCCCCCcceEEEEecCCCceEEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCC
Q 023283 1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP 80 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP 80 (284)
|++...-+..++.+.+.++.+|++.+.|++++|.+|+|.+|||+|+||+.+.|+|+||.+..+.+++.+|||||+|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP 80 (305)
T KOG1594|consen 1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP 80 (305)
T ss_pred CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence 66777777889999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeC
Q 023283 81 QFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI 160 (284)
Q Consensus 81 ~~g~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~ 160 (284)
+||..+.+++|||||++.|.++....+++ ..+.+.|.|.|.+++++++.|||.|++++++.|.+ +.|+++.+|+|+
T Consensus 81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt 156 (305)
T KOG1594|consen 81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT 156 (305)
T ss_pred ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC
Confidence 99999999999999999999998764443 22367899999999999999999999999999996 789999999999
Q ss_pred CCCeEEEeeccCcceecCCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEE
Q 023283 161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVI 240 (284)
Q Consensus 161 ~~~~~~~~~g~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i 240 (284)
+++|+.|++++|+||+++|+++++|+||++..|+|++.+...|.++.+.++|.+++|+||.+.|.++.|.|...+|+|.|
T Consensus 157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l 236 (305)
T KOG1594|consen 157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVL 236 (305)
T ss_pred CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEE
Confidence 99999999999999999999999999999999999998888899989999999999999999999999999999999999
Q ss_pred EecCCCCEEEEcCCCCCCCcccC-----Cccc--------------cceEEeecchhccccc
Q 023283 241 HKEGLPDWCGIHGRGNQNQWQIL-----EMKS--------------TGTCFVLMGQQLRNRL 283 (284)
Q Consensus 241 ~~~~~~~~vvw~p~~~~~pw~~~-----~~~~--------------~g~~~~~~g~~~~~~~ 283 (284)
.++|+|++||| |||.+. |+.+ +....|+|||.|.+|.
T Consensus 237 ~k~g~pDaVVW------NPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q 292 (305)
T KOG1594|consen 237 KKEGLPDAVVW------NPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQ 292 (305)
T ss_pred eccCCCceEEe------ChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEE
Confidence 99999999999 899842 2222 2356789999998875
|
|
| >cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like | Back alignment and domain information |
|---|
| >COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 | Back alignment and domain information |
|---|
| >cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX | Back alignment and domain information |
|---|
| >cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB | Back alignment and domain information |
|---|
| >PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 | Back alignment and domain information |
|---|
| >cd01081 Aldose_epim aldose 1-epimerase superfamily | Back alignment and domain information |
|---|
| >PRK15172 putative aldose-1-epimerase; Provisional | Back alignment and domain information |
|---|
| >cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR | Back alignment and domain information |
|---|
| >cd09019 galactose_mutarotase_like galactose mutarotase_like | Back alignment and domain information |
|---|
| >COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PLN00194 aldose 1-epimerase; Provisional | Back alignment and domain information |
|---|
| >TIGR02636 galM_Leloir galactose mutarotase | Back alignment and domain information |
|---|
| >PRK11055 galM galactose-1-epimerase; Provisional | Back alignment and domain information |
|---|
| >PTZ00485 aldolase 1-epimerase; Provisional | Back alignment and domain information |
|---|
| >KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 | Back alignment and domain information |
|---|
| >PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A | Back alignment and domain information |
|---|
| >cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like | Back alignment and domain information |
|---|
| >PF14315 DUF4380: Domain of unknown function (DUF4380) | Back alignment and domain information |
|---|
| >TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain | Back alignment and domain information |
|---|
| >PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B | Back alignment and domain information |
|---|
| >PRK01318 membrane protein insertase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 284 | ||||
| 2hta_A | 309 | Crystal Structure Of A Putative Mutarotase (Yead) F | 6e-21 | ||
| 2cir_A | 297 | Structure-Based Functional Annotation: Yeast Ymr099 | 2e-20 | ||
| 2ciq_A | 297 | Structure-Based Functional Annotation: Yeast Ymr099 | 2e-20 | ||
| 1jov_A | 270 | Crystal Structure Analysis Of Hi1317 Length = 270 | 2e-13 | ||
| 3k25_A | 289 | Crystal Structure Of Slr1438 Protein From Synechocy | 8e-11 |
| >pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 | Back alignment and structure |
|
| >pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 | Back alignment and structure |
| >pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 | Back alignment and structure |
| >pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 | Back alignment and structure |
| >pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 284 | |||
| 2hta_A | 309 | Putative enzyme related to aldose 1-epimerase; car | 7e-71 | |
| 3k25_A | 289 | SLR1438 protein; structural genomics, PSI-2, prote | 1e-69 | |
| 2cir_A | 297 | Hexose-6-phosphate mutarotase; hypothetical protei | 2e-68 | |
| 1jov_A | 270 | HI1317; hypothetical protein, structure 2 function | 1e-54 | |
| 3dcd_A | 307 | Galactose mutarotase related enzyme; Q5FKD7 LAR33 | 7e-36 | |
| 3q1n_A | 294 | Galactose mutarotase related enzyme; structural ge | 5e-34 | |
| 3os7_A | 341 | Galactose mutarotase-like protein; structural geno | 2e-18 | |
| 3mwx_A | 326 | Aldose 1-epimerase; structural genomics, joint cen | 6e-17 | |
| 3nre_A | 291 | Aldose 1-epimerase; structural genomics, joint cen | 8e-15 | |
| 3ty1_A | 384 | Hypothetical aldose 1-epimerase; supersandwich, st | 9e-07 |
| >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 | Back alignment and structure |
|---|
Score = 220 bits (560), Expect = 7e-71
Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 16/247 (6%)
Query: 4 SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
+ + V + + ++ +V+ +P A +L G LSW+ EE+L+ S
Sbjct: 22 ALPVIEQLTPVLSRRQLDDLDLIVVDHP-QVKASFALQGAHLLSWKPVGEEEVLWLSNNT 80
Query: 64 IFKPPHAVRGGIPICFPQFGN--RGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDL 121
FK A+RGG+PIC+P FG + L HGFARN W + + ++ V +
Sbjct: 81 PFKTGVALRGGVPICWPWFGPAAQQGLPSHGFARNLPWALKAH------NEDDNGVMLTF 134
Query: 122 LLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDIS 181
L+ SE K WPH F R + I F+ + A H+YF + DI+
Sbjct: 135 ELQSSEATRKYWPHDFTLLARFKVGKTC------EIELEAHGEFATTSALHSYFNVGDIA 188
Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
V++ GL ++D + + TF DRVYL+ I D RT +
Sbjct: 189 NVKVSGLGD-RFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVV 247
Query: 242 KEGLPDW 248
+
Sbjct: 248 HHHHLNV 254
|
| >3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 | Back alignment and structure |
|---|
| >2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 | Back alignment and structure |
|---|
| >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 | Back alignment and structure |
|---|
| >3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 | Back alignment and structure |
|---|
| >3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 | Back alignment and structure |
|---|
| >3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 | Back alignment and structure |
|---|
| >3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 | Back alignment and structure |
|---|
| >3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 | Back alignment and structure |
|---|
| >3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Length = 384 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 284 | |||
| 3k25_A | 289 | SLR1438 protein; structural genomics, PSI-2, prote | 100.0 | |
| 2hta_A | 309 | Putative enzyme related to aldose 1-epimerase; car | 100.0 | |
| 1jov_A | 270 | HI1317; hypothetical protein, structure 2 function | 100.0 | |
| 2cir_A | 297 | Hexose-6-phosphate mutarotase; hypothetical protei | 100.0 | |
| 3dcd_A | 307 | Galactose mutarotase related enzyme; Q5FKD7 LAR33 | 100.0 | |
| 3q1n_A | 294 | Galactose mutarotase related enzyme; structural ge | 100.0 | |
| 3mwx_A | 326 | Aldose 1-epimerase; structural genomics, joint cen | 100.0 | |
| 3os7_A | 341 | Galactose mutarotase-like protein; structural geno | 100.0 | |
| 3nre_A | 291 | Aldose 1-epimerase; structural genomics, joint cen | 100.0 | |
| 1yga_A | 342 | Hypothetical 37.9 kDa protein in BIO3-HXT17 interg | 100.0 | |
| 1snz_A | 344 | Aldose 1-epimerase; mutarotase, galactosemia, isom | 100.0 | |
| 1lur_A | 339 | Aldose 1-epimerase; vitamin B12, methyltransferase | 99.97 | |
| 1nsx_A | 347 | Galactose mutarotase; epimerase, galactose metabol | 99.97 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.96 | |
| 3imh_A | 338 | Galactose-1-epimerase; structural genomics, PSI-2, | 99.96 | |
| 3ty1_A | 384 | Hypothetical aldose 1-epimerase; supersandwich, st | 99.82 | |
| 3bs6_A | 280 | Inner membrane protein OXAA; YIDC/OXA1/ALB3 family | 94.74 | |
| 3blc_A | 330 | Inner membrane protein OXAA; YIDC, membrane assemb | 93.47 |
| >3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-46 Score=335.04 Aligned_cols=258 Identities=22% Similarity=0.367 Sum_probs=214.0
Q ss_pred EEEEecCCCceEEEEECCC-ccEEEEe-CCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC-----
Q 023283 14 VEVTKDRNGIEQVVLRNPR-GASAKIS-LHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG----- 86 (284)
Q Consensus 14 ~~~~~~~~g~~~~~L~~~~-g~~~~V~-~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~----- 86 (284)
+++.+..++++.++|+|++ |.++.|. .+||+|+||+. +|+|+||.++.++++..+++|||+|+||||+||+.
T Consensus 2 ~~~~~~~~~~~~~~l~n~~~g~~~~v~~~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gg~Pvl~P~~gri~~g~~~ 80 (289)
T 3k25_A 2 YNISFTPDRPLTYHLEDDQSLARLSLVPGRGGLVTEWTV-QGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFN 80 (289)
T ss_dssp EEEEEECCBCCEEEEEETTTTEEEEEEGGGTSEEEEEEE-TTEECBCBCTTGGGSTTSCCCBSBCEEBSCSSCCGGGEEE
T ss_pred cceeeccCCceEEEEECCCCCeEEEeehhcCCEEEEEEe-CCEEEEecChhhccCcccccCCCCCEEECCCCCCCCCEEE
Confidence 3455557899999999975 7888775 89999999998 58899998877777777789999999999999983
Q ss_pred ------CCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeC
Q 023283 87 ------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI 160 (284)
Q Consensus 87 ------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~ 160 (284)
++++|||+|++.|++.+.. +++..+|+|+|.++++++++|||+|+++++|+|.+ ++|+++++++|+
T Consensus 81 ~~g~~y~l~~HGf~r~~~W~~~~~~-------~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~~~N~ 152 (289)
T 3k25_A 81 HAGKSYRLKQHGFARDLPWEVIGQQ-------TQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQG-HSLRIEQRIANL 152 (289)
T ss_dssp ETTEEEECCTTBSGGGSCCEEEEEE-------CSSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEET-TEEEEEEEEEEC
T ss_pred ECCEEeecCCCCCcccCCeEEEEec-------CCCCcEEEEEEecChhHHhcCCceEEEEEEEEEeC-CEEEEEEEEEcC
Confidence 5799999999999998753 12267899999988778899999999999999986 799999999999
Q ss_pred CCCeEEEeeccCcceecCCcceEEEecCCCCccccccccccceeecCCeeec-CCCccEEEeCCC-CeEEEEeCCCCcEE
Q 023283 161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTF-ESEIDRVYLSSS-DKIAILDHERKRTF 238 (284)
Q Consensus 161 ~~~~~~~~~g~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~-~~~~D~vy~~~~-~~~~l~d~~~~r~i 238 (284)
++++|||++|+||||+++++.+++|.++. ..|+|+.... .... .+.+.+ ..++|++|.+.+ ..++|.++..+++|
T Consensus 153 ~~~~~~~~~~~H~yF~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~-~~~~~~~~~~~D~~~~~~~~~~~~l~~~~~~~~i 229 (289)
T 3k25_A 153 GDQRMPFSLGFHPYFFCREKLGITLAIPA-NDYLDQKTGD-CHGY-DGQLNLTSPELDLAFTQISQPRAHFIDPDRNLKI 229 (289)
T ss_dssp SSSCEEECCEECCEEECSCCTTCEEECSC-SEEEETTTCC-EEEC-CSCCCTTSSEEEEEECCCSSSEEEEEETTTTEEE
T ss_pred CCCcceeEEecCcEEccCCcceEEEEcCc-ccccccccCc-cccc-CCcccCCchhhceEeecCCCCeEEEEECCCCCEE
Confidence 99999999999999999998899998885 4677764432 2222 233444 358999998763 57899999999999
Q ss_pred EEEecC-CCCEEEEcCCCC----CCCccc-CCcc--ccceEEeecchhccccc
Q 023283 239 VIHKEG-LPDWCGIHGRGN----QNQWQI-LEMK--STGTCFVLMGQQLRNRL 283 (284)
Q Consensus 239 ~i~~~~-~~~~vvw~p~~~----~~pw~~-~~~~--~~g~~~~~~g~~~~~~~ 283 (284)
+|..++ ++++|||+|++. +|||.. .|.. ..|...|+|||+++.++
T Consensus 230 ~v~~~~~~~~~vvw~~~~~~fvCvEP~~~~~da~n~~~~~~~L~PGe~~~~~~ 282 (289)
T 3k25_A 230 EVSFSELYQTLVLWTVAGKDYLCLEPWSGPRNALNSGEQLAWVEPYSSRSAWV 282 (289)
T ss_dssp EEEECTTCCEEEEEEESSSCEEEEEEESSCTTHHHHCTTCEEECTTEEEEEEE
T ss_pred EEEeCCCCcEEEEEecCCCCEEEEccccCCCCcccCCCCcEEECCCCeEEEEE
Confidence 999887 899999999766 999984 2222 26899999999987653
|
| >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A | Back alignment and structure |
|---|
| >1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 | Back alignment and structure |
|---|
| >2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* | Back alignment and structure |
|---|
| >3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
| >3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} | Back alignment and structure |
|---|
| >3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
| >3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} | Back alignment and structure |
|---|
| >1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* | Back alignment and structure |
|---|
| >1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 | Back alignment and structure |
|---|
| >1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* | Back alignment and structure |
|---|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
| >3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
| >3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
| >3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 284 | ||||
| d1jova_ | 269 | b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph | 1e-59 |
| >d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: Hypothetical protein HI1317 domain: Hypothetical protein HI1317 species: Haemophilus influenzae [TaxId: 727]
Score = 188 bits (479), Expect = 1e-59
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 25/231 (10%)
Query: 19 DRNGIEQVVLRNPRGASAKISLHGGQALSWRTERG-EELLFTSTKAIFKPPHAVRGGIPI 77
N I + L++ G +AKISL G Q +SW+ + +++L+ S FK +A+RGG+PI
Sbjct: 17 QHNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPI 75
Query: 78 CFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSF 137
C+P FG HG AR R W + S KV ++ +L +
Sbjct: 76 CYPWFGGVK-QPAHGTARIRLWQLSHY------YISVHKVRLEF-------ELFSDLNII 121
Query: 138 EFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNL 197
E ++ + + + S A HTYF I DI++V ++GL +
Sbjct: 122 EAKVSM------VFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLN 175
Query: 198 CQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDW 248
Q+E +D +Y + + + ILD RT +H +
Sbjct: 176 QQQE---NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQF 223
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 284 | |||
| d1jova_ | 269 | Hypothetical protein HI1317 {Haemophilus influenza | 100.0 | |
| d1z45a1 | 342 | Galactose mutarotase {Baker's yeast (Saccharomyces | 99.91 | |
| d1nsza_ | 340 | Galactose mutarotase {Lactococcus lactis [TaxId: 1 | 99.89 | |
| d1lura_ | 329 | Aldose 1-epimerase homologue {Nematode (Caenorhabd | 99.89 | |
| d1so0a_ | 344 | Galactose mutarotase {Human (Homo sapiens) [TaxId: | 99.86 | |
| d1k1xa2 | 275 | 4-alpha-glucanotransferase, C-terminal domain {Arc | 87.94 |
| >d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: Hypothetical protein HI1317 domain: Hypothetical protein HI1317 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=1.9e-48 Score=346.48 Aligned_cols=247 Identities=25% Similarity=0.388 Sum_probs=194.8
Q ss_pred ceEEEEecCCCceEEEEECCCccEEEEeCCCeEEEEEEeC-CCeEEEEeCCCcccCCCCCccCccceeCCCCCCCCCCCC
Q 023283 12 AAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQ 90 (284)
Q Consensus 12 ~~~~~~~~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~-~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~~~~~ 90 (284)
+.+++.+ .|+++.++|+|+. ++|+|+++||+|+||+++ +++|+||+++++.|+.+++||||+|+||||||+. .+++
T Consensus 11 ~~~~~~~-~~~l~~i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~-~~p~ 87 (269)
T d1jova_ 11 PELHLVQ-HNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-KQPA 87 (269)
T ss_dssp TTEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-SSST
T ss_pred CeEEeec-cCCccEEEEeCCC-EEEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCCC-CCCC
Confidence 4566665 6899999999997 899999999999999985 4579999999999999999999999999999985 5699
Q ss_pred ceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeec
Q 023283 91 HGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIA 170 (284)
Q Consensus 91 HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g 170 (284)
|||||++.|+|++.+. +.....+++++ ..|||.|+++++|+|+- + ++|+|+++.+|||++|
T Consensus 88 HGFAR~~~w~l~~~~~------~~~~~~l~~~l-------~~~~~~f~~~~~~~ltl----~--~~l~n~~~~~~pf~~g 148 (269)
T d1jova_ 88 HGTARIRLWQLSHYYI------SVHKVRLEFEL-------FSDLNIIEAKVSMVFTD----K--CHLTFTHYGEESAQAA 148 (269)
T ss_dssp TBSGGGSBCEEEEEEE------ETTEEEEEEEE-------ECTTSCEEEEEEEEESS----S--EEEEEEECCSSCEEEE
T ss_pred CccccccceEEEEEec------CCceEEEEEEe-------ccCCCcceEEEEEEecc----E--EEEEEccCCCccceec
Confidence 9999999999988751 22133333333 34788888888888852 2 3445667778999999
Q ss_pred cCcceecCCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEEEecCCCCEEE
Q 023283 171 YHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCG 250 (284)
Q Consensus 171 ~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~~~~~~~vv 250 (284)
+||||+++++.++.+.|+++..|.+.... . ....+.+.+.+++|+||.+.+..+.|.|+..+++|+|++++++++||
T Consensus 149 ~HpyF~v~d~~~~~v~gl~~~~~~~~~~~-~--~~~~~~~~~~~~~D~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~vV 225 (269)
T d1jova_ 149 LHTYFNIGDINQVEVQGLPETCFNSLNQQ-Q--ENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVL 225 (269)
T ss_dssp ECCEEECSCGGGEEEESCCSEEEETTTTE-E--EECCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEE
T ss_pred ccceEecCCccceEEecCCcccccccccc-c--cccCCCcccCcCeeEEecCCCCcEEEEeCCCCCEEEEEEeCCCcEEE
Confidence 99999999999999999998776554332 2 12245577888999999998888999999999999999999999999
Q ss_pred EcCCCC------CCCcccCCccc--cceEEeecchhccccc
Q 023283 251 IHGRGN------QNQWQILEMKS--TGTCFVLMGQQLRNRL 283 (284)
Q Consensus 251 w~p~~~------~~pw~~~~~~~--~g~~~~~~g~~~~~~~ 283 (284)
|||..+ ..+|..+.|.| .+.+.|+|||+++.++
T Consensus 226 WnP~~~~a~~~~d~~~~~fvCVEp~~~~~~L~PGes~~~~~ 266 (269)
T d1jova_ 226 WNPWHKKTSGMSETGYQKMLCLETARIHHLLEFGESLSVEI 266 (269)
T ss_dssp EECTTSCCTTCCTTGGGGEEEEEEEEEEEEECTTCEEEEEE
T ss_pred ECCccchhccccccCCCCEEEECcccCCceECCCCeEEEEE
Confidence 975322 22233333433 4555688899988764
|
| >d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|