Citrus Sinensis ID: 023283


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQQLRNRLL
ccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccEEEEEEEEcccEEEEEccccccccccccccccccEEEcccccccccccccccccccEEEEccccccccccccccEEEEEEcccccccccccccccEEEEEEEEcccccEEEEEEEEcccccEEEEEEEcccccccccccEEEEEcccccEEEEccccccEEEEcccEEEEcccccEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEccEEEccccccHHcccc
cccccHHHcccccEEEEEccccccEEEEEcccccEEEEEEEccEEEEEcccccccEEEEcccccccccccEEccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEcccHcccccccccEEEEEEEEEccccEEEEEEEEEEcccccEEEEHHHHHHEEcccccEEEEEcccccHHHHcccccccEcccccEEEEcccccEEEEccccEEEEEccccccEEEEEEcccccEEEEEccHHHHHHHHccccccccEEEEEcHHHHHHcc
mkdsgaasdhRAAVEvtkdrngieqvvlrnprgasakislhggqalswRTERGEELLFTstkaifkpphavrggipicfpqfgnrgsleqhgfarnrswviddnppplkpsdsqgkVYVDLLlkpseedlkiwphSFEFRLRVSLAADGNLALISRirninckpfsfsIAYHTYFAISDISEVRIEGLETLDYLDNLCqrerfteqgdaltfeSEIDrvylsssdkiaildhERKRTFVIhkeglpdwcgihgrgnqNQWQILEMKSTGTCFVLMGQQLRNRLL
mkdsgaasdhraavevtkdrngieqvvlrnprgasakislhggqalswRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNppplkpsdsqGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFteqgdaltfeseidrvylsssdkiaildheRKRTFVIHKeglpdwcgihGRGNQNQWQILEMKSTGTCFVLMGQQLRNRLL
MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQQLRNRLL
**************************V**********ISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVI**************KVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQ*******
**************EVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKP*DSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQQL*N*L*
*************VEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQQLRNRLL
***SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQQLRNRLL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCGIHGRGNQNQWQILEMKSTGTCFVLMGQQLRNRLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q40784329 Putative glucose-6-phosph N/A no 0.820 0.708 0.661 9e-92
P39173294 Putative glucose-6-phosph N/A no 0.718 0.693 0.309 2e-20
Q03161297 Glucose-6-phosphate 1-epi yes no 0.739 0.707 0.298 2e-19
P44160271 Putative glucose-6-phosph yes no 0.545 0.571 0.257 2e-07
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1 Back     alignment and function desciption
 Score =  336 bits (862), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 156/236 (66%), Positives = 193/236 (81%), Gaps = 3/236 (1%)

Query: 14  VEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRG 73
            E+ K  +G+E+VVLR  R   A+I L+GGQ  SW+ + GEELLF S+KAIFKPP A+RG
Sbjct: 24  AELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRG 83

Query: 74  GIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIW 133
           GIPIC PQFG  G+LEQHGFARNR W ID++PPPL P +   K +VDL+L+P+EEDLKIW
Sbjct: 84  GIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPL-PVNPAIKAFVDLILRPAEEDLKIW 142

Query: 134 PHSFEFRLRVSLAADGNLALISRIRNINC--KPFSFSIAYHTYFAISDISEVRIEGLETL 191
           PHSFEFRLRV+L   G+L+L SRIRN N   +PFS++ AYHTYF +SDISEVR+EGLET+
Sbjct: 143 PHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETM 202

Query: 192 DYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPD 247
           DYLDNL  +ERFTEQGDA+ FESE+D+VYL++  KIAI+DHE+K+TFV+ KEGLPD
Sbjct: 203 DYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAIIDHEKKKTFVVTKEGLPD 258





Cenchrus ciliaris (taxid: 35872)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli (strain K12) GN=yeaD PE=1 SV=2 Back     alignment and function description
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1 Back     alignment and function description
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
255537695305 aldose 1-epimerase, putative [Ricinus co 0.869 0.809 0.814 1e-119
225454434312 PREDICTED: putative glucose-6-phosphate 0.869 0.791 0.801 1e-114
357481487304 Apospory-associated protein C [Medicago 0.866 0.809 0.798 1e-113
449521465304 PREDICTED: putative glucose-6-phosphate 0.869 0.812 0.793 1e-113
255541784317 aldose 1-epimerase, putative [Ricinus co 0.869 0.779 0.797 1e-113
388509736304 unknown [Medicago truncatula] 0.866 0.809 0.794 1e-112
449464082304 PREDICTED: putative glucose-6-phosphate 0.869 0.812 0.789 1e-112
224058411306 predicted protein [Populus trichocarpa] 0.866 0.803 0.804 1e-112
224064156317 predicted protein [Populus trichocarpa] 0.869 0.779 0.765 1e-109
356506036317 PREDICTED: putative glucose-6-phosphate 0.869 0.779 0.757 1e-107
>gi|255537695|ref|XP_002509914.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549813|gb|EEF51301.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/248 (81%), Positives = 227/248 (91%), Gaps = 1/248 (0%)

Query: 1   MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTS 60
           M  SGAA D +AAVEV KDRNGI+Q++LRNPRGASA++SLHGGQ LSW+T++GEELLFTS
Sbjct: 1   MNHSGAACDQKAAVEVIKDRNGIDQIILRNPRGASARVSLHGGQVLSWKTDQGEELLFTS 60

Query: 61  TK-AIFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYV 119
           +K AIFKPPH VRGGIPICFPQFGNRGSLEQHGFAR + WVIDDNPPPL P++S GK YV
Sbjct: 61  SKQAIFKPPHPVRGGIPICFPQFGNRGSLEQHGFARKKIWVIDDNPPPLHPNESNGKAYV 120

Query: 120 DLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISD 179
           DLLLKPS++DLKIWPH FEFRLRVSLAADGNL L+SRIRN+NCKP +FSIAYHTYF+ISD
Sbjct: 121 DLLLKPSDDDLKIWPHCFEFRLRVSLAADGNLTLLSRIRNVNCKPLAFSIAYHTYFSISD 180

Query: 180 ISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFV 239
           ISEVR+EGLETLDYLDNLCQ+ERFTEQGD LTFESE+DRVYLSSS  +AI DHERKRTF+
Sbjct: 181 ISEVRVEGLETLDYLDNLCQKERFTEQGDTLTFESEVDRVYLSSSHVVAIFDHERKRTFL 240

Query: 240 IHKEGLPD 247
           + KEGLPD
Sbjct: 241 VRKEGLPD 248




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454434|ref|XP_002280220.1| PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera] gi|297745389|emb|CBI40469.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481487|ref|XP_003611029.1| Apospory-associated protein C [Medicago truncatula] gi|355512364|gb|AES93987.1| Apospory-associated protein C [Medicago truncatula] Back     alignment and taxonomy information
>gi|449521465|ref|XP_004167750.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255541784|ref|XP_002511956.1| aldose 1-epimerase, putative [Ricinus communis] gi|223549136|gb|EEF50625.1| aldose 1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388509736|gb|AFK42934.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449464082|ref|XP_004149758.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224058411|ref|XP_002299496.1| predicted protein [Populus trichocarpa] gi|222846754|gb|EEE84301.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064156|ref|XP_002301394.1| predicted protein [Populus trichocarpa] gi|118487620|gb|ABK95635.1| unknown [Populus trichocarpa] gi|222843120|gb|EEE80667.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356506036|ref|XP_003521794.1| PREDICTED: putative glucose-6-phosphate 1-epimerase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2128519306 AT4G23730 [Arabidopsis thalian 0.859 0.797 0.746 1.5e-99
TAIR|locus:2082842317 AT3G61610 [Arabidopsis thalian 0.841 0.753 0.748 2.2e-96
TAIR|locus:2165580312 AT5G57330 [Arabidopsis thalian 0.816 0.743 0.646 8.2e-83
TAIR|locus:2084233306 AT3G01590 [Arabidopsis thalian 0.795 0.738 0.589 5.1e-74
TAIR|locus:2145748306 AT5G14500 [Arabidopsis thalian 0.813 0.754 0.576 1.1e-73
TAIR|locus:2117572318 AT4G25900 [Arabidopsis thalian 0.834 0.745 0.522 5.6e-68
UNIPROTKB|Q9KQJ7296 VC_2001 "Putative uncharacteri 0.704 0.675 0.383 2.3e-30
TIGR_CMR|VC_2001296 VC_2001 "conserved hypothetica 0.704 0.675 0.383 2.3e-30
TAIR|locus:2154870307 AT5G66530 [Arabidopsis thalian 0.753 0.697 0.339 8.2e-28
ASPGD|ASPL0000045178315 AN10222 [Emericella nidulans ( 0.788 0.711 0.330 3.5e-27
TAIR|locus:2128519 AT4G23730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 183/245 (74%), Positives = 211/245 (86%)

Query:     4 SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
             SG   + R  V++ KDRNG +Q++L+NPRGAS KISLHGGQ LSW+T++G+ELLF STKA
Sbjct:     5 SGTGPEKRPTVDLVKDRNGTDQILLQNPRGASVKISLHGGQVLSWKTDKGDELLFNSTKA 64

Query:    64 IFKPPHAVRGGIPICFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLL 123
               KPPH VRGGIPICFPQFG RGSLEQHGFARN+ W++++NPP L   DS GK YVDL+L
Sbjct:    65 NLKPPHPVRGGIPICFPQFGTRGSLEQHGFARNKMWLVENNPPALPSFDSTGKAYVDLVL 124

Query:   124 KPSEED-LKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISE 182
             K S+ED ++IWP+SFEF LRVSLA DGNL LISR+RNIN KPFSFSIAYHTYF+ISDISE
Sbjct:   125 KSSDEDTMRIWPYSFEFHLRVSLALDGNLTLISRVRNINSKPFSFSIAYHTYFSISDISE 184

Query:   183 VRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHK 242
             VR+EGLETLDYLDN+  RERFTEQGDALTFESEIDRVYL+S D +AI DHERKRTF+I K
Sbjct:   185 VRLEGLETLDYLDNMHDRERFTEQGDALTFESEIDRVYLNSKDVVAIFDHERKRTFLIKK 244

Query:   243 EGLPD 247
             EGLPD
Sbjct:   245 EGLPD 249




GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2082842 AT3G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165580 AT5G57330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084233 AT3G01590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145748 AT5G14500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117572 AT4G25900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQJ7 VC_2001 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2001 VC_2001 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2154870 AT5G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045178 AN10222 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.3LOW CONFIDENCE prediction!
3rd Layer5.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00026976001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (312 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034293001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (498 aa)
       0.899
GSVIVG00030550001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (581 aa)
       0.899
GSVIVG00022229001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (523 aa)
       0.899
GSVIVG00016656001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (470 aa)
       0.899
GSVIVG00015125001
RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (623 aa)
       0.899
GSVIVG00014624001
RecName- Full=Glucose-6-phosphate isomerase; EC=5.3.1.9; (340 aa)
       0.899
GSVIVG00014427001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (485 aa)
       0.899
GSVIVG00010644001
SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (479 aa)
       0.899
GSVIVG00010600001
SubName- Full=Chromosome chr16 scaffold_271, whole genome shotgun sequence; (621 aa)
       0.899
GSVIVG00038435001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)
       0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 3e-86
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 1e-50
COG0676287 COG0676, COG0676, Uncharacterized enzymes related 3e-47
cd09025271 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, 3e-25
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 2e-13
cd09024288 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, sim 1e-12
COG2017308 COG2017, GalM, Galactose mutarotase and related en 5e-09
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information
 Score =  258 bits (661), Expect = 3e-86
 Identities = 100/226 (44%), Positives = 133/226 (58%), Gaps = 12/226 (5%)

Query: 26  VVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNR 85
           +VL +P GASA+I+L G Q LSW+ + G++LL+ S +A F    A+RGGIP+C+P FG  
Sbjct: 2   IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPH 60

Query: 86  G---SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLR 142
           G    L  HGFAR R W + +       S+ +  V V L L  ++E   IWPH+FE RL 
Sbjct: 61  GPNADLPAHGFARTRLWELLEV------SEDEDGVTVSLELDDTDETRAIWPHAFELRLT 114

Query: 143 VSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRER 202
           V+L  D  L L   + N   KPFSF+ A HTYF +SDI +VR+EGLE   YLD L  +  
Sbjct: 115 VTLGFDT-LELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLEGATYLDKLTDQRE 173

Query: 203 FTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDW 248
              QG A+TF+ E+DRVYL++   + I D    R   I K G P  
Sbjct: 174 -KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSA 218


D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269

>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|223748 COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|185701 cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
PRK15172300 putative aldose-1-epimerase; Provisional 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 100.0
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.97
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.96
PLN00194337 aldose 1-epimerase; Provisional 99.95
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.95
PRK11055342 galM galactose-1-epimerase; Provisional 99.93
PTZ00485376 aldolase 1-epimerase; Provisional 99.9
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 99.74
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.73
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.01
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 98.98
PF14315274 DUF4380: Domain of unknown function (DUF4380) 97.47
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 93.63
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 92.99
PRK01318 521 membrane protein insertase; Provisional 90.85
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=6.5e-60  Score=405.25  Aligned_cols=273  Identities=62%  Similarity=1.039  Sum_probs=249.5

Q ss_pred             CCCCCCCCCCcceEEEEecCCCceEEEEECCCccEEEEeCCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCC
Q 023283            1 MKDSGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFP   80 (284)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP   80 (284)
                      |++...-+..++.+.+.++.+|++.+.|++++|.+|+|.+|||+|+||+.+.|+|+||.+..+.+++.+|||||+|+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP   80 (305)
T KOG1594|consen    1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP   80 (305)
T ss_pred             CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence            66777777889999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             CCCCCCCCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeC
Q 023283           81 QFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI  160 (284)
Q Consensus        81 ~~g~~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~  160 (284)
                      +||..+.+++|||||++.|.++....+++   ..+.+.|.|.|.+++++++.|||.|++++++.|.+ +.|+++.+|+|+
T Consensus        81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt  156 (305)
T KOG1594|consen   81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT  156 (305)
T ss_pred             ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC
Confidence            99999999999999999999998764443   22367899999999999999999999999999996 789999999999


Q ss_pred             CCCeEEEeeccCcceecCCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEE
Q 023283          161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVI  240 (284)
Q Consensus       161 ~~~~~~~~~g~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i  240 (284)
                      +++|+.|++++|+||+++|+++++|+||++..|+|++.+...|.++.+.++|.+++|+||.+.|.++.|.|...+|+|.|
T Consensus       157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l  236 (305)
T KOG1594|consen  157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVL  236 (305)
T ss_pred             CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEE
Confidence            99999999999999999999999999999999999998888899989999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEcCCCCCCCcccC-----Cccc--------------cceEEeecchhccccc
Q 023283          241 HKEGLPDWCGIHGRGNQNQWQIL-----EMKS--------------TGTCFVLMGQQLRNRL  283 (284)
Q Consensus       241 ~~~~~~~~vvw~p~~~~~pw~~~-----~~~~--------------~g~~~~~~g~~~~~~~  283 (284)
                      .++|+|++|||      |||.+.     |+.+              +....|+|||.|.+|.
T Consensus       237 ~k~g~pDaVVW------NPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q  292 (305)
T KOG1594|consen  237 KKEGLPDAVVW------NPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQ  292 (305)
T ss_pred             eccCCCceEEe------ChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEE
Confidence            99999999999      899842     2222              2356789999998875



>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2hta_A309 Crystal Structure Of A Putative Mutarotase (Yead) F 6e-21
2cir_A297 Structure-Based Functional Annotation: Yeast Ymr099 2e-20
2ciq_A297 Structure-Based Functional Annotation: Yeast Ymr099 2e-20
1jov_A270 Crystal Structure Analysis Of Hi1317 Length = 270 2e-13
3k25_A289 Crystal Structure Of Slr1438 Protein From Synechocy 8e-11
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From Salmonella Typhimurium In Orthorhombic Form Length = 309 Back     alignment and structure

Iteration: 1

Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 16/218 (7%) Query: 23 IEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQF 82 ++ +V+ +P+ A +L G LSW+ EE+L+ S FK A+RGG+PIC+P F Sbjct: 41 LDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWF 99 Query: 83 G--NRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFR 140 G + L HGFARN W + + ++ V + L+ SE K WPH F Sbjct: 100 GPAAQQGLPSHGFARNLPWALKAH------NEDDNGVMLTFELQSSEATRKYWPHDFTLL 153 Query: 141 LRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQR 200 R + + L + F+ + A H+YF + DI+ V++ GL ++D + Sbjct: 154 ARFKVGKTCEIELEAH------GEFATTSALHSYFNVGDIANVKVSGLGD-RFIDKVNDA 206 Query: 201 ERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTF 238 + TF DRVYL+ I D RT Sbjct: 207 KEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTI 244
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase. Complex With Glucose-6-Phosphate Length = 297 Back     alignment and structure
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes For A D-Hexose-6-Phosphate Mutarotase Length = 297 Back     alignment and structure
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317 Length = 270 Back     alignment and structure
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis Sp. Pcc 6803, Northeast Structural Genomics Consortium Target Sgr112 Length = 289 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 7e-71
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 1e-69
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 2e-68
1jov_A270 HI1317; hypothetical protein, structure 2 function 1e-54
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 7e-36
3q1n_A294 Galactose mutarotase related enzyme; structural ge 5e-34
3os7_A341 Galactose mutarotase-like protein; structural geno 2e-18
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 6e-17
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 8e-15
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 9e-07
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure
 Score =  220 bits (560), Expect = 7e-71
 Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 16/247 (6%)

Query: 4   SGAASDHRAAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTERGEELLFTSTKA 63
           +    +    V   +  + ++ +V+ +P    A  +L G   LSW+    EE+L+ S   
Sbjct: 22  ALPVIEQLTPVLSRRQLDDLDLIVVDHP-QVKASFALQGAHLLSWKPVGEEEVLWLSNNT 80

Query: 64  IFKPPHAVRGGIPICFPQFGN--RGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDL 121
            FK   A+RGG+PIC+P FG   +  L  HGFARN  W +  +      ++    V +  
Sbjct: 81  PFKTGVALRGGVPICWPWFGPAAQQGLPSHGFARNLPWALKAH------NEDDNGVMLTF 134

Query: 122 LLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDIS 181
            L+ SE   K WPH F    R  +           I       F+ + A H+YF + DI+
Sbjct: 135 ELQSSEATRKYWPHDFTLLARFKVGKTC------EIELEAHGEFATTSALHSYFNVGDIA 188

Query: 182 EVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIH 241
            V++ GL    ++D +   +         TF    DRVYL+      I D    RT  + 
Sbjct: 189 NVKVSGLGD-RFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVV 247

Query: 242 KEGLPDW 248
                + 
Sbjct: 248 HHHHLNV 254


>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Length = 384 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.97
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.97
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.96
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.96
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.82
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 94.74
3blc_A330 Inner membrane protein OXAA; YIDC, membrane assemb 93.47
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
Probab=100.00  E-value=7.5e-46  Score=335.04  Aligned_cols=258  Identities=22%  Similarity=0.367  Sum_probs=214.0

Q ss_pred             EEEEecCCCceEEEEECCC-ccEEEEe-CCCeEEEEEEeCCCeEEEEeCCCcccCCCCCccCccceeCCCCCCCC-----
Q 023283           14 VEVTKDRNGIEQVVLRNPR-GASAKIS-LHGGQALSWRTERGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRG-----   86 (284)
Q Consensus        14 ~~~~~~~~g~~~~~L~~~~-g~~~~V~-~~GA~l~s~~~~~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~-----   86 (284)
                      +++.+..++++.++|+|++ |.++.|. .+||+|+||+. +|+|+||.++.++++..+++|||+|+||||+||+.     
T Consensus         2 ~~~~~~~~~~~~~~l~n~~~g~~~~v~~~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gg~Pvl~P~~gri~~g~~~   80 (289)
T 3k25_A            2 YNISFTPDRPLTYHLEDDQSLARLSLVPGRGGLVTEWTV-QGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFN   80 (289)
T ss_dssp             EEEEEECCBCCEEEEEETTTTEEEEEEGGGTSEEEEEEE-TTEECBCBCTTGGGSTTSCCCBSBCEEBSCSSCCGGGEEE
T ss_pred             cceeeccCCceEEEEECCCCCeEEEeehhcCCEEEEEEe-CCEEEEecChhhccCcccccCCCCCEEECCCCCCCCCEEE
Confidence            3455557899999999975 7888775 89999999998 58899998877777777789999999999999983     


Q ss_pred             ------CCCCceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeC
Q 023283           87 ------SLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNI  160 (284)
Q Consensus        87 ------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~  160 (284)
                            ++++|||+|++.|++.+..       +++..+|+|+|.++++++++|||+|+++++|+|.+ ++|+++++++|+
T Consensus        81 ~~g~~y~l~~HGf~r~~~W~~~~~~-------~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~~~N~  152 (289)
T 3k25_A           81 HAGKSYRLKQHGFARDLPWEVIGQQ-------TQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQG-HSLRIEQRIANL  152 (289)
T ss_dssp             ETTEEEECCTTBSGGGSCCEEEEEE-------CSSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEET-TEEEEEEEEEEC
T ss_pred             ECCEEeecCCCCCcccCCeEEEEec-------CCCCcEEEEEEecChhHHhcCCceEEEEEEEEEeC-CEEEEEEEEEcC
Confidence                  5799999999999998753       12267899999988778899999999999999986 799999999999


Q ss_pred             CCCeEEEeeccCcceecCCcceEEEecCCCCccccccccccceeecCCeeec-CCCccEEEeCCC-CeEEEEeCCCCcEE
Q 023283          161 NCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTF-ESEIDRVYLSSS-DKIAILDHERKRTF  238 (284)
Q Consensus       161 ~~~~~~~~~g~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~-~~~~D~vy~~~~-~~~~l~d~~~~r~i  238 (284)
                      ++++|||++|+||||+++++.+++|.++. ..|+|+.... .... .+.+.+ ..++|++|.+.+ ..++|.++..+++|
T Consensus       153 ~~~~~~~~~~~H~yF~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~-~~~~~~~~~~~D~~~~~~~~~~~~l~~~~~~~~i  229 (289)
T 3k25_A          153 GDQRMPFSLGFHPYFFCREKLGITLAIPA-NDYLDQKTGD-CHGY-DGQLNLTSPELDLAFTQISQPRAHFIDPDRNLKI  229 (289)
T ss_dssp             SSSCEEECCEECCEEECSCCTTCEEECSC-SEEEETTTCC-EEEC-CSCCCTTSSEEEEEECCCSSSEEEEEETTTTEEE
T ss_pred             CCCcceeEEecCcEEccCCcceEEEEcCc-ccccccccCc-cccc-CCcccCCchhhceEeecCCCCeEEEEECCCCCEE
Confidence            99999999999999999998899998885 4677764432 2222 233444 358999998763 57899999999999


Q ss_pred             EEEecC-CCCEEEEcCCCC----CCCccc-CCcc--ccceEEeecchhccccc
Q 023283          239 VIHKEG-LPDWCGIHGRGN----QNQWQI-LEMK--STGTCFVLMGQQLRNRL  283 (284)
Q Consensus       239 ~i~~~~-~~~~vvw~p~~~----~~pw~~-~~~~--~~g~~~~~~g~~~~~~~  283 (284)
                      +|..++ ++++|||+|++.    +|||.. .|..  ..|...|+|||+++.++
T Consensus       230 ~v~~~~~~~~~vvw~~~~~~fvCvEP~~~~~da~n~~~~~~~L~PGe~~~~~~  282 (289)
T 3k25_A          230 EVSFSELYQTLVLWTVAGKDYLCLEPWSGPRNALNSGEQLAWVEPYSSRSAWV  282 (289)
T ss_dssp             EEEECTTCCEEEEEEESSSCEEEEEEESSCTTHHHHCTTCEEECTTEEEEEEE
T ss_pred             EEEeCCCCcEEEEEecCCCCEEEEccccCCCCcccCCCCcEEECCCCeEEEEE
Confidence            999887 899999999766    999984 2222  26899999999987653



>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 1e-59
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]
 Score =  188 bits (479), Expect = 1e-59
 Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 25/231 (10%)

Query: 19  DRNGIEQVVLRNPRGASAKISLHGGQALSWRTERG-EELLFTSTKAIFKPPHAVRGGIPI 77
             N I  + L++  G +AKISL G Q +SW+ +   +++L+ S    FK  +A+RGG+PI
Sbjct: 17  QHNDIPVLHLKHAVG-TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPI 75

Query: 78  CFPQFGNRGSLEQHGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSF 137
           C+P FG       HG AR R W +           S  KV ++        +L    +  
Sbjct: 76  CYPWFGGVK-QPAHGTARIRLWQLSHY------YISVHKVRLEF-------ELFSDLNII 121

Query: 138 EFRLRVSLAADGNLALISRIRNINCKPFSFSIAYHTYFAISDISEVRIEGLETLDYLDNL 197
           E ++ +             +   +    S   A HTYF I DI++V ++GL    +    
Sbjct: 122 EAKVSM------VFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLN 175

Query: 198 CQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDW 248
            Q+E              +D +Y + + +  ILD    RT  +H      +
Sbjct: 176 QQQE---NVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQF 223


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.91
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.89
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.89
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.86
d1k1xa2275 4-alpha-glucanotransferase, C-terminal domain {Arc 87.94
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]
Probab=100.00  E-value=1.9e-48  Score=346.48  Aligned_cols=247  Identities=25%  Similarity=0.388  Sum_probs=194.8

Q ss_pred             ceEEEEecCCCceEEEEECCCccEEEEeCCCeEEEEEEeC-CCeEEEEeCCCcccCCCCCccCccceeCCCCCCCCCCCC
Q 023283           12 AAVEVTKDRNGIEQVVLRNPRGASAKISLHGGQALSWRTE-RGEELLFTSTKAIFKPPHAVRGGIPICFPQFGNRGSLEQ   90 (284)
Q Consensus        12 ~~~~~~~~~~g~~~~~L~~~~g~~~~V~~~GA~l~s~~~~-~g~e~L~~~~~~~~~~~~~irgG~pvlfP~~g~~~~~~~   90 (284)
                      +.+++.+ .|+++.++|+|+. ++|+|+++||+|+||+++ +++|+||+++++.|+.+++||||+|+||||||+. .+++
T Consensus        11 ~~~~~~~-~~~l~~i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~-~~p~   87 (269)
T d1jova_          11 PELHLVQ-HNDIPVLHLKHAV-GTAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGV-KQPA   87 (269)
T ss_dssp             TTEEEEE-ETTEEEEEEEETT-EEEEEETBTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGG-SSST
T ss_pred             CeEEeec-cCCccEEEEeCCC-EEEEEECCCCEEEEEEECCCCceEEEeCChhhccCCCcccCCcceeCcccCCC-CCCC
Confidence            4566665 6899999999997 899999999999999985 4579999999999999999999999999999985 5699


Q ss_pred             ceeeccCCeEEeccCCCCCCCCCCCceEEEEEecCCchhhccCCcceEEEEEEEEcCCCcEEEEEEEEeCCCCeEEEeec
Q 023283           91 HGFARNRSWVIDDNPPPLKPSDSQGKVYVDLLLKPSEEDLKIWPHSFEFRLRVSLAADGNLALISRIRNINCKPFSFSIA  170 (284)
Q Consensus        91 HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~~~~L~~~~~L~~~~~v~N~~~~~~~~~~g  170 (284)
                      |||||++.|+|++.+.      +.....+++++       ..|||.|+++++|+|+-    +  ++|+|+++.+|||++|
T Consensus        88 HGFAR~~~w~l~~~~~------~~~~~~l~~~l-------~~~~~~f~~~~~~~ltl----~--~~l~n~~~~~~pf~~g  148 (269)
T d1jova_          88 HGTARIRLWQLSHYYI------SVHKVRLEFEL-------FSDLNIIEAKVSMVFTD----K--CHLTFTHYGEESAQAA  148 (269)
T ss_dssp             TBSGGGSBCEEEEEEE------ETTEEEEEEEE-------ECTTSCEEEEEEEEESS----S--EEEEEEECCSSCEEEE
T ss_pred             CccccccceEEEEEec------CCceEEEEEEe-------ccCCCcceEEEEEEecc----E--EEEEEccCCCccceec
Confidence            9999999999988751      22133333333       34788888888888852    2  3445667778999999


Q ss_pred             cCcceecCCcceEEEecCCCCccccccccccceeecCCeeecCCCccEEEeCCCCeEEEEeCCCCcEEEEEecCCCCEEE
Q 023283          171 YHTYFAISDISEVRIEGLETLDYLDNLCQRERFTEQGDALTFESEIDRVYLSSSDKIAILDHERKRTFVIHKEGLPDWCG  250 (284)
Q Consensus       171 ~HpYF~~~~~~~~~v~gl~~~~~~d~~~~~~~~~~~~~~~~~~~~~D~vy~~~~~~~~l~d~~~~r~i~i~~~~~~~~vv  250 (284)
                      +||||+++++.++.+.|+++..|.+.... .  ....+.+.+.+++|+||.+.+..+.|.|+..+++|+|++++++++||
T Consensus       149 ~HpyF~v~d~~~~~v~gl~~~~~~~~~~~-~--~~~~~~~~~~~~~D~i~~~~~~~~~i~d~~~~~~i~v~~~g~~~~vV  225 (269)
T d1jova_         149 LHTYFNIGDINQVEVQGLPETCFNSLNQQ-Q--ENVPSPRHISENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVL  225 (269)
T ss_dssp             ECCEEECSCGGGEEEESCCSEEEETTTTE-E--EECCSSBCCSSCEEEEEECSSSEEEEEETTTTEEEEEEEESCSEEEE
T ss_pred             ccceEecCCccceEEecCCcccccccccc-c--cccCCCcccCcCeeEEecCCCCcEEEEeCCCCCEEEEEEeCCCcEEE
Confidence            99999999999999999998776554332 2  12245577888999999998888999999999999999999999999


Q ss_pred             EcCCCC------CCCcccCCccc--cceEEeecchhccccc
Q 023283          251 IHGRGN------QNQWQILEMKS--TGTCFVLMGQQLRNRL  283 (284)
Q Consensus       251 w~p~~~------~~pw~~~~~~~--~g~~~~~~g~~~~~~~  283 (284)
                      |||..+      ..+|..+.|.|  .+.+.|+|||+++.++
T Consensus       226 WnP~~~~a~~~~d~~~~~fvCVEp~~~~~~L~PGes~~~~~  266 (269)
T d1jova_         226 WNPWHKKTSGMSETGYQKMLCLETARIHHLLEFGESLSVEI  266 (269)
T ss_dssp             EECTTSCCTTCCTTGGGGEEEEEEEEEEEEECTTCEEEEEE
T ss_pred             ECCccchhccccccCCCCEEEECcccCCceECCCCeEEEEE
Confidence            975322      22233333433  4555688899988764



>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure