Citrus Sinensis ID: 023287

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASSH
ccccEEEEEEccccEEEEEEccccccccccccEEEccccccccccEEEEEEEEcccccccccccccEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHccc
cccEEEEEEEccccEEEEEEcccccccccccccEEEcccHHHHccEEEEEEEEEcccccEEEcccEEEEEEEEEEEEEEcccHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHcccc
mgnafccvqvdqSTVAIRERFgkfdevldpgchcvpwllgcqiagdLSLRLQQLDvrcetktkdnvFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRasvpkldlddvfEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRdsvlgfsenvpgttakdILDMVLITQYFDTMKeigassksssvfiphgpgavQDIATQIRNGLLQASSH
mgnafccvqvdqSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRcetktkdnvfvNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVqikraegeaesKYLAGVGIARQRQAIVDGLRDSVLGFsenvpgttakdilDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASSH
MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASSH
***AFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAAN******KIVQIK******ESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIG*******VFIP*****VQDIA*************
***AFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGF*********KDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQ****LL*****
MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASSH
*GNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQAS**
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MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVxxxxxxxxxxxxxxxxxxxxxYGYEIVQTLIVDIEPDVHxxxxxxxxxxxxxxxxxxxxxAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q9FM19286 Hypersensitive-induced re yes no 0.996 0.989 0.872 1e-146
Q9CAR7286 Hypersensitive-induced re no no 0.996 0.989 0.833 1e-136
Q9SRH6285 Hypersensitive-induced re no no 0.996 0.992 0.795 1e-134
Q9FHM7292 Hypersensitive-induced re no no 0.996 0.969 0.575 5e-98
P16148184 Protein PPLZ12 OS=Lupinus N/A no 0.602 0.929 0.625 3e-61
P0DKS0313 Protein QmcA OS=Wiggleswo yes no 0.848 0.769 0.242 3e-12
P0AA56305 Protein QmcA OS=Shigella yes no 0.823 0.767 0.261 2e-11
P0AA53305 Protein QmcA OS=Escherich N/A no 0.823 0.767 0.261 2e-11
P0AA54305 Protein QmcA OS=Escherich yes no 0.823 0.767 0.261 2e-11
P0AA55305 Protein QmcA OS=Escherich N/A no 0.823 0.767 0.261 2e-11
>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1 Back     alignment and function desciption
 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/283 (87%), Positives = 271/283 (95%)

Query: 1   MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCET 60
           MGN FCCVQVDQSTVAI+E FGKF++VL+PGCH +PW LG Q+AG LSLR+QQLDVRCET
Sbjct: 1   MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ 120
           KTKDNVFVNVVAS+QYRALA KA+DA+YKLSNTR QIQAYVFDVIRASVPKL LDDVFEQ
Sbjct: 61  KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEA 180
           KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPD HVKRAMNEINAAAR+R+AANEKAEA
Sbjct: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEA 180

Query: 181 EKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLIT 240
           EKI+QIKRAEGEAESKYL+G+GIARQRQAIVDGLRDSVLGF+ NVPGTTAKD++DMVL+T
Sbjct: 181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVT 240

Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASS 283
           QYFDTMKEIGASSKSS+VFIPHGPGAV+D+A+QIR+GLLQ SS
Sbjct: 241 QYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSS 283

Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1 Back     alignment and function description
>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1 Back     alignment and function description
>sp|P0DKS0|QMCA_WIGBR Protein QmcA OS=Wigglesworthia glossinidia brevipalpis GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1 Back     alignment and function description
>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1 Back     alignment and function description
>sp|P0AA55|QMCA_ECO57 Protein QmcA OS=Escherichia coli O157:H7 GN=qmcA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
151347473285 hypersensitive-induced response protein 1.0 0.996 0.904 1e-151
449440758286 PREDICTED: hypersensitive-induced respon 1.0 0.993 0.877 1e-147
224140939285 predicted protein [Populus trichocarpa] 0.996 0.992 0.883 1e-147
115465785288 Os05g0591900 [Oryza sativa Japonica Grou 0.996 0.982 0.886 1e-147
225456672291 PREDICTED: hypersensitive-induced respon 1.0 0.975 0.863 1e-145
225456674286 PREDICTED: hypersensitive-induced respon 1.0 0.993 0.863 1e-145
297734025343 unnamed protein product [Vitis vinifera] 1.0 0.827 0.863 1e-145
15241939286 Hypersensitive-induced response protein 0.996 0.989 0.872 1e-145
358249224284 uncharacterized protein LOC100804982 [Gl 0.992 0.992 0.872 1e-145
297793865287 band 7 family protein [Arabidopsis lyrat 0.996 0.986 0.872 1e-145
>gi|151347473|gb|ABS01349.1| hypersensitive-induced response protein [Carica papaya] Back     alignment and taxonomy information
 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/284 (90%), Positives = 277/284 (97%)

Query: 1   MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCET 60
           MGN FCCVQVDQSTVAIRERFGKFD+VL+PGCHC+PW LG Q+AG LSLRLQQLDVRCET
Sbjct: 1   MGNLFCCVQVDQSTVAIRERFGKFDDVLEPGCHCLPWFLGSQLAGHLSLRLQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ 120
           KTKDNVFVNVVAS+QYRALA KA+DAFYKLSNTRTQIQAYVFDVIRASVPKL+LDDVFEQ
Sbjct: 61  KTKDNVFVNVVASIQYRALADKANDAFYKLSNTRTQIQAYVFDVIRASVPKLNLDDVFEQ 120

Query: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEA 180
           KN+IAKAVE+ELEKAMSAYGYEIVQTLIVDIEPD HVKRAMNEINAAARLRVAANEKAEA
Sbjct: 121 KNEIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180

Query: 181 EKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLIT 240
           EKI+QIKRAEGEAESKYL+G+GIARQRQAIVDGLRDSVLGFS NVPGTTAKD++DMVL+T
Sbjct: 181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTAKDVMDMVLVT 240

Query: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASSH 284
           QYFDTMKEIGA+SKSS+VFIPHGPGAV+D+ATQIR+GLLQASSH
Sbjct: 241 QYFDTMKEIGAASKSSAVFIPHGPGAVRDVATQIRDGLLQASSH 284

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440758|ref|XP_004138151.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449440760|ref|XP_004138152.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449477307|ref|XP_004154987.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449477311|ref|XP_004154988.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224140939|ref|XP_002323834.1| predicted protein [Populus trichocarpa] gi|222866836|gb|EEF03967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115465785|ref|NP_001056492.1| Os05g0591900 [Oryza sativa Japonica Group] gi|48475228|gb|AAT44297.1| putative hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|113580043|dbj|BAF18406.1| Os05g0591900 [Oryza sativa Japonica Group] gi|125553541|gb|EAY99250.1| hypothetical protein OsI_21211 [Oryza sativa Indica Group] gi|215701471|dbj|BAG92895.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737490|dbj|BAG96620.1| unnamed protein product [Oryza sativa Japonica Group] gi|215737615|dbj|BAG96745.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767071|dbj|BAG99299.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767262|dbj|BAG99490.1| unnamed protein product [Oryza sativa Japonica Group] gi|222632761|gb|EEE64893.1| hypothetical protein OsJ_19752 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|225456672|ref|XP_002272267.1| PREDICTED: hypersensitive-induced response protein 1 isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456674|ref|XP_002272188.1| PREDICTED: hypersensitive-induced response protein 1 isoform 1 [Vitis vinifera] gi|225456676|ref|XP_002272225.1| PREDICTED: hypersensitive-induced response protein 1 isoform 2 [Vitis vinifera] gi|359491740|ref|XP_003634316.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734025|emb|CBI15272.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15241939|ref|NP_201080.1| Hypersensitive-induced response protein 1 [Arabidopsis thaliana] gi|75262692|sp|Q9FM19.1|HIR1_ARATH RecName: Full=Hypersensitive-induced response protein 1; Short=AtHIR1 gi|10177452|dbj|BAB10843.1| hypersensitive-induced response protein [Arabidopsis thaliana] gi|17065548|gb|AAL32928.1| hypersensitive-induced response protein [Arabidopsis thaliana] gi|21386975|gb|AAM47891.1| hypersensitive-induced response protein [Arabidopsis thaliana] gi|21554781|gb|AAM63689.1| hypersensitive-induced response protein [Arabidopsis thaliana] gi|332010266|gb|AED97649.1| Hypersensitive-induced response protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358249224|ref|NP_001240269.1| uncharacterized protein LOC100804982 [Glycine max] gi|255646614|gb|ACU23781.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297793865|ref|XP_002864817.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] gi|297310652|gb|EFH41076.1| band 7 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2170698286 HIR1 "HYPERSENSITIVE-INDUCED R 0.996 0.989 0.872 2.5e-129
TAIR|locus:2196749286 AT1G69840 [Arabidopsis thalian 0.996 0.989 0.833 4.9e-124
TAIR|locus:2100242285 HIR2 "hypersensitive induced r 0.996 0.992 0.795 9.8e-119
TAIR|locus:2153117292 AT5G51570 [Arabidopsis thalian 0.996 0.969 0.575 5.3e-88
UNIPROTKB|Q81JF5321 BAS1928 "SPFH domain/Band 7 fa 0.718 0.635 0.295 3.6e-18
TIGR_CMR|BA_2075321 BA_2075 "SPFH domain/Band 7 fa 0.718 0.635 0.295 3.6e-18
UNIPROTKB|Q602F1309 MCA3112 "SPFH domain/Band 7 fa 0.869 0.799 0.272 3e-15
UNIPROTKB|P0AA53305 qmcA "predicted protease, memb 0.823 0.767 0.269 3.6e-14
UNIPROTKB|Q5LQ79296 SPO2617 "SPFH domain/band 7 fa 0.848 0.814 0.269 5.8e-14
TIGR_CMR|SPO_2617296 SPO_2617 "SPFH domain/band 7 f 0.848 0.814 0.269 5.8e-14
TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 247/283 (87%), Positives = 271/283 (95%)

Query:     1 MGNAFCCVQVDQSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCET 60
             MGN FCCVQVDQSTVAI+E FGKF++VL+PGCH +PW LG Q+AG LSLR+QQLDVRCET
Sbjct:     1 MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQ 120
             KTKDNVFVNVVAS+QYRALA KA+DA+YKLSNTR QIQAYVFDVIRASVPKL LDDVFEQ
Sbjct:    61 KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query:   121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEA 180
             KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPD HVKRAMNEINAAAR+R+AANEKAEA
Sbjct:   121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEA 180

Query:   181 EKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLIT 240
             EKI+QIKRAEGEAESKYL+G+GIARQRQAIVDGLRDSVLGF+ NVPGTTAKD++DMVL+T
Sbjct:   181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVT 240

Query:   241 QYFDTMKEIGASSKSSSVFIPHGPGAVQDIATQIRNGLLQASS 283
             QYFDTMKEIGASSKSS+VFIPHGPGAV+D+A+QIR+GLLQ SS
Sbjct:   241 QYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSS 283
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IEA;IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q602F1 MCA3112 "SPFH domain/Band 7 family" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|P0AA53 qmcA "predicted protease, membrane anchored" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2617 SPO_2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAR7HIR2_ARATHNo assigned EC number0.83390.99640.9895nono
Q9FM19HIR1_ARATHNo assigned EC number0.87270.99640.9895yesno
Q9SRH6HIR3_ARATHNo assigned EC number0.79500.99640.9929nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XVII0326
hypothetical protein (286 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 1e-140
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 3e-29
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 8e-27
smart00244160 smart00244, PHB, prohibitin homologues 1e-26
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 2e-25
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 8e-21
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 2e-11
TIGR01933261 TIGR01933, hflK, HflK protein 5e-08
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 7e-08
cd03399128 cd03399, Band_7_flotillin, Band_7_flotillin: a sub 7e-05
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 2e-04
cd03408207 cd03408, Band_7_5, A subgroup of the band 7 domain 4e-04
cd03400124 cd03400, Band_7_1, A subgroup of the band 7 domain 5e-04
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  395 bits (1018), Expect = e-140
 Identities = 174/264 (65%), Positives = 203/264 (76%), Gaps = 2/264 (0%)

Query: 12  QSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVV 71
           QS VAI ERFGKF +V  PGCH V  L    +AG LSLR+QQLDVR ETKTKDNVFV VV
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 72  ASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEE 131
             +QYR   + A+DAFYKL N   QIQ+YVFDV+RA +PKL LD++FEQK++IAKAVEEE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 132 LEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEG 191
           L +AMS YG+EIV TLI DI+PD  VKRAMNEINAA R RVAA  KAEAEKI  IK AE 
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEA 179

Query: 192 EAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGA 251
           +AE+K L GVG A QRQAI DGLR+S+L  ++ VPG TAKD++D++L+ QYFDT+K  G 
Sbjct: 180 DAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239

Query: 252 SSKSSSVFIPHGPGAVQDIATQIR 275
           SS S+ VF PHGPG  QDI  QIR
Sbjct: 240 SS-STVVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information
>gnl|CDD|239502 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
KOG2620301 consensus Prohibitins and stomatins of the PID sup 100.0
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 100.0
KOG2621288 consensus Prohibitins and stomatins of the PID sup 100.0
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.98
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.97
KOG3090290 consensus Prohibitin-like protein [Posttranslation 99.95
KOG3083271 consensus Prohibitin [Posttranslational modificati 99.94
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.89
KOG2962322 consensus Prohibitin-related membrane protease sub 99.86
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.83
KOG2668 428 consensus Flotillins [Intracellular trafficking, s 99.83
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.78
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 99.77
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.68
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.48
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 99.01
PTZ00491850 major vault protein; Provisional 98.81
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 97.25
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 96.82
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.62
PRK11029334 FtsH protease regulator HflC; Provisional 96.55
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 96.51
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 96.42
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 96.4
PRK10930419 FtsH protease regulator HflK; Provisional 96.24
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 96.24
PRK13665316 hypothetical protein; Provisional 95.95
KOG2620301 consensus Prohibitins and stomatins of the PID sup 95.54
COG2268548 Uncharacterized protein conserved in bacteria [Fun 94.62
COG1580159 FliL Flagellar basal body-associated protein [Cell 93.96
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 91.94
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 88.0
PF0374899 FliL: Flagellar basal body-associated protein FliL 86.68
PRK01558198 V-type ATP synthase subunit E; Provisional 86.45
PRK01558198 V-type ATP synthase subunit E; Provisional 85.79
KOG2668428 consensus Flotillins [Intracellular trafficking, s 85.5
PRK07718142 fliL flagellar basal body-associated protein FliL; 84.66
PRK05697137 flagellar basal body-associated protein FliL-like 83.01
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 81.28
PRK02292188 V-type ATP synthase subunit E; Provisional 81.16
PRK01005207 V-type ATP synthase subunit E; Provisional 80.6
TIGR01147113 V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi 80.38
PRK07021162 fliL flagellar basal body-associated protein FliL; 80.28
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
Probab=100.00  E-value=1.1e-53  Score=374.04  Aligned_cols=262  Identities=66%  Similarity=0.964  Sum_probs=248.7

Q ss_pred             CCeEEEEeecCccceeeCCcceeecCCcceeEeeeeceeEEEEecCCCcccCCCcEEEEEEEEEEEEcccchhhHhcccc
Q 023287           12 QSTVAIRERFGKFDEVLDPGCHCVPWLLGCQIAGDLSLRLQQLDVRCETKTKDNVFVNVVASVQYRALAKKASDAFYKLS   91 (284)
Q Consensus        12 ~ge~~Vv~~fG~~~~~~~pG~~~~~P~~~~~v~~~v~~r~~~~~~~~~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~   91 (284)
                      +|++|||++||++.++++||+||++||++ .+...++++.++++++.+++|+|++.|.++++++|||.||.+.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~i~-~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPLVE-TVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEecccc-ceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            58999999999999999999999999975 44458999999999998899999999999999999999977778999999


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Q 023287           92 NTRTQIQAYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLR  171 (284)
Q Consensus        92 ~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~  171 (284)
                      ++...|.+.+++++|+++|++++++++++|++|+..+.+.+++.+++|||.|++|.|++++||+++.++|++++.|++++
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhc
Q 023287          172 VAANEKAEAEKIVQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGA  251 (284)
Q Consensus       172 ~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~  251 (284)
                      ++.+.+||+++...+.+|+|++++.+++|+|+|++.++.|+|+++.+..+.++++..++++++++++.++|+|+|++++.
T Consensus       160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~  239 (262)
T cd03407         160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR  239 (262)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999877778888999999999999999987


Q ss_pred             cCCCcEEEecCCCCcHhhHHHHHH
Q 023287          252 SSKSSSVFIPHGPGAVQDIATQIR  275 (284)
Q Consensus       252 ~~~~~~i~~p~~~~~~~~~~~~~~  275 (284)
                      +++ +++++|.+++|+.+++.+|+
T Consensus       240 ~~~-kviv~p~~~~~~~~~~~~~~  262 (262)
T cd03407         240 SSS-TVVFRPHGPGGAQDIYAQIR  262 (262)
T ss_pred             CCC-CEEEecCCCccHHHHHHhcC
Confidence            555 89999999999999998874

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only] Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion] Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PRK02292 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK01005 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G Back     alignment and domain information
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 1e-12
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 6e-10
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 4e-07
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 47  LSLRLQQLDVRCET-KTKDNVFVNVVASVQYR-----ALAKKASDAF--YKLSNTRTQIQ 98
           +SL +  L  RCE  +T + V + V    Q +      L   A + F    + + +  + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 99  AYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVK 158
             +   +R+ +  L ++ +++ ++  AK V E     +   G EI+   I D+   V   
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 159 RAMNEINAAAR 169
            ++ +   +  
Sbjct: 130 SSLGKTQTSGP 140
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.97
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.95
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.87
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.86
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.95
2zuo_A861 MVP, major vault protein; repeat domains, protein- 83.82
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.97  E-value=3.7e-30  Score=213.69  Aligned_cols=173  Identities=25%  Similarity=0.297  Sum_probs=138.5

Q ss_pred             eeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhHhccccCHHHHHHHHHHHHHHHHcCCCcHHHHHhcHHH
Q 023287           45 GDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDAFYKLSNTRTQIQAYVFDVIRASVPKLDLDDVFEQKND  123 (284)
Q Consensus        45 ~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~ei~~~R~~  123 (284)
                      +.+|+|.++++++. .++|+|+++|.++++++|||.|  |.++++++.|+...+.+++++.+|+++|++++++++++|++
T Consensus         7 ~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~R~~   84 (188)
T 3bk6_A            7 VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDK   84 (188)
T ss_dssp             CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHCHHH
T ss_pred             EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhhHHH
Confidence            58999999999987 8999999999999999999998  67788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhcHHH
Q 023287          124 IAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRVAANEKAEAEKIVQIKRAEGEAESKYLAGVGI  203 (284)
Q Consensus       124 i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A~~~~~a~~~~Ae~~~~~~~~~A~aeae~~~~~Aea~  203 (284)
                      |+..+++.+++.+.+|||.|.+|.|++|+||+++.++|++++.|++++++.+.+|||+           +++.+..|+| 
T Consensus        85 i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege-----------~~a~~~~a~a-  152 (188)
T 3bk6_A           85 LNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAE-----------RQAAEKLREA-  152 (188)
T ss_dssp             HHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999988887776655444444           4444333332 


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHhccCCC
Q 023287          204 ARQRQAIVDGLRDSVLGFSENVPGTTAKDILDMVLITQYFDTMKEIGASSKS  255 (284)
Q Consensus       204 a~~~~~~a~a~~~a~~~~~~a~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~  255 (284)
                                    .+.++.      +|    ..+..||||++.+++.++++
T Consensus       153 --------------~~~~~~------~~----~~l~lr~le~~~~ia~~~~~  180 (188)
T 3bk6_A          153 --------------AEIISE------HP----MALQLRTLQTISDVAGDKSN  180 (188)
T ss_dssp             --------------HHHHHH------CT----THHHHHHTTC----------
T ss_pred             --------------HHHHHh------CH----HHHHHHHHHHHHHHhcCCCC
Confidence                          111221      23    34677999999999865443
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 3e-19
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (196), Expect = 3e-19
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 47  LSLRLQQLDVRCET-KTKDNVFVNVVASVQYRALAKKASDAF-------YKLSNTRTQIQ 98
           +SL +  L  RCE  +T + V + V    Q + + +K   A          + + +  + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 99  AYVFDVIRASVPKLDLDDVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVK 158
             +   +R+ +  L ++ +++ ++  AK V E     +   G EI+   I D+   V   
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 159 RAMNEINAAAR 169
            ++ +   +  
Sbjct: 130 SSLGKTQTSGP 140

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.84
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.2e-22  Score=157.52  Aligned_cols=124  Identities=19%  Similarity=0.349  Sum_probs=110.6

Q ss_pred             eeeeceeEEEEecCC-CcccCCCcEEEEEEEEEEEEcccchhhH-----h--ccccCHHHHHHHHHHHHHHHHcCCCcHH
Q 023287           44 AGDLSLRLQQLDVRC-ETKTKDNVFVNVVASVQYRALAKKASDA-----F--YKLSNTRTQIQAYVFDVIRASVPKLDLD  115 (284)
Q Consensus        44 ~~~v~~r~~~~~~~~-~v~TkD~~~v~v~~~v~yrI~d~~~~~~-----~--~~~~~~~~~l~~~~~~~lr~~i~~~~~~  115 (284)
                      ..++|++.++++++. +++|+||+++.|+++++|||.|+.-..+     +  +...+++..+++.+++++|+++++++++
T Consensus         7 ~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~   86 (143)
T d1wina_           7 GQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVE   86 (143)
T ss_dssp             CCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             eeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            358999999999997 7899999999999999999998532111     1  2345788899999999999999999999


Q ss_pred             HHHhcHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023287          116 DVFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDVHVKRAMNEINAA  167 (284)
Q Consensus       116 ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~~~~A  167 (284)
                      +++++|++|.+.+.+.+++.+.+|||+|.+|.|+||+||++|.++|.++++|
T Consensus        87 el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          87 QIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999877655