Citrus Sinensis ID: 023293

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MSDHVVLYVDRLIRPESVQEEGDGAARETSGGVLEDEAGPSCSAGNDVDDEKVGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTIASGSNLTATQPQEPV
ccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEccccccccccccHHEEEEccEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccc
cccEEEEEEccccccccHHHHHcccccccccccccHcccccccccccccccccccccccccEEEEEEEccccccHcccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEcccEEEccccccccccHEHEEEHHHHHcccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccc
MSDHVVLYVDrlirpesvqeegdgaaretsggvledeagpscsagndvddekvgedepllqvgecricqeedsinnletpcacsgslkyaHRKCVQHWcnekgditceichqqykpnytapppprleetaieigggwtisgtpldlrdpRLLAIAEAERQFLEAEydeydasnasgsaFCRSAALILMALLLLRHAlaipdadgeddvSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTIAsgsnltatqpqepv
MSDHVVLYVDrlirpesvqeegdgaaretsggvledeagpscsagndvddekvGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTIasgsnltatqpqepv
MSDHVVLYVDRLIRPESVQEEGDGAARETSGGVLEDEAGPSCSAGNDVDDEKVGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSaalilmallllrhalaIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILqrrrqrqeaaalaatqvaFVLQSGQRRGLQFTIASGSNLTATQPQEPV
****VVLYVDRLI*********************************************LLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTA*****LEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTI***************
MSDHVVLYVDRLI***************************************************CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQ*******************************************
MSDHVVLYVDRLIRPESV**************VLEDEAGPSCSAGNDVDDEKVGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQR*********LAATQVAFVLQSGQRRGLQFTIASGSN**********
*SDHVVLYVDRLIRPE******************************************LLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTIASGS***********
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MSDHVVLYVDRLIRPESVQEEGDGAARETSGGVLEDEAGPSCSAGNDVDDEKVGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLxxxxxxxxxxxxxxxxxxxxxNASGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFTIASGSNLTATQPQEPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
P40318 1319 ERAD-associated E3 ubiqui yes no 0.285 0.061 0.329 2e-07
Q0P496421 E3 ubiquitin-protein liga no no 0.260 0.175 0.333 2e-07
Q86UD3253 E3 ubiquitin-protein liga yes no 0.176 0.197 0.42 3e-07
Q8BRX9218 E3 ubiquitin-protein liga yes no 0.176 0.229 0.42 3e-07
A0JN69253 E3 ubiquitin-protein liga yes no 0.176 0.197 0.42 3e-07
Q5XIE5253 E3 ubiquitin-protein liga yes no 0.176 0.197 0.42 3e-07
Q0IH10252 E3 ubiquitin-protein liga N/A no 0.193 0.218 0.366 5e-07
Q68FA7251 E3 ubiquitin-protein liga no no 0.193 0.219 0.366 5e-07
A6NNE9402 E3 ubiquitin-protein liga no no 0.330 0.233 0.326 2e-06
Q3TZ87348 E3 ubiquitin-protein liga no no 0.183 0.149 0.365 2e-06
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1 SV=1 Back     alignment and function desciption
 Score = 56.6 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 44  AGNDVDDEKVGEDEPLLQVGECRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEK 102
           A  + D     +D P      CRIC+ E + +N L  PC C GS+KY H  C+  W   K
Sbjct: 20  ANEETDTATFNDDAP--SGATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASK 77

Query: 103 --------GDITCEICHQ--QYKPNYTAPPPPRL 126
                    D+ C+ICH   Q+K  Y    P ++
Sbjct: 78  NIDISKPGADVKCDICHYPIQFKTIYAENMPEKI 111
E3 ubiquitin-protein ligase which accepts ubiquitin specifically from endoplasmic reticulum-associated UBC6 and UBC7 E2 ligases, and transfers it to substrates promoting their degradation. Mediates the degradation of a broad range of substrates, inluding endoplasmic reticulum membrane proteins (ERQC), soluble nuclear proteins and soluble cytoplasmic proteins (CytoQC). Component of the DOA10 ubiquitin ligase complex, which is part of the ERAD-C pathway responsible for the rapid degradation of membrane proteins with misfolded cytoplasmic domains. ERAD-C substrates are ubiquitinated through DOA10 in conjunction with the E2 ubiquitin-conjugating enzymes UBC6 and UBC7-CUE1. Ubiquitinated substrates are then removed to the cytosol via the action of the UFD1-NPL4-CDC48/p97 (UNC) AAA ATPase complex and targeted to the proteasome. Also recognizes the N-terminally acetylated residue of proteins as degradation signal (degron). N-terminally acetylated target proteins include MATALPHA2, TBF1, SLK19, YMR090W, HIS3, HSP104, UBP6 and ARO8.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2 SV=1 Back     alignment and function description
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2 SV=1 Back     alignment and function description
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2 SV=1 Back     alignment and function description
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3 PE=1 SV=1 Back     alignment and function description
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2 SV=1 Back     alignment and function description
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3 PE=2 SV=1 Back     alignment and function description
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2 SV=3 Back     alignment and function description
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
224109016280 predicted protein [Populus trichocarpa] 0.971 0.985 0.781 1e-110
255562860283 membrane associated ring finger 1,8, put 0.961 0.964 0.765 1e-110
224101351280 predicted protein [Populus trichocarpa] 0.968 0.982 0.764 1e-107
356577396286 PREDICTED: uncharacterized protein LOC10 1.0 0.993 0.744 1e-103
356499805289 PREDICTED: uncharacterized protein LOC10 0.989 0.972 0.726 1e-102
356498276286 PREDICTED: uncharacterized protein LOC10 0.957 0.951 0.758 1e-100
356519854356 PREDICTED: uncharacterized protein LOC10 0.992 0.792 0.713 6e-98
449495926307 PREDICTED: uncharacterized LOC101203306 0.947 0.876 0.727 1e-96
255547401292 membrane associated ring finger 1,8, put 0.982 0.955 0.682 1e-95
225457415291 PREDICTED: uncharacterized protein LOC10 0.982 0.958 0.693 8e-95
>gi|224109016|ref|XP_002315052.1| predicted protein [Populus trichocarpa] gi|222864092|gb|EEF01223.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 240/288 (83%), Gaps = 12/288 (4%)

Query: 1   MSDHVVLYVDRLIRPESVQ--EEGDGAARETSGGVLEDEAGPSCSAGND-VDDEKVGEDE 57
           MSDHVVL VD+LIRP S    EE D A       V E + GPSCS  ND +DD   GE+E
Sbjct: 1   MSDHVVLDVDQLIRPASTAPAEESDKAI------VKEADVGPSCSRANDGIDDGISGEEE 54

Query: 58  PLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117
           PL+Q  ECRICQEEDS++NLE PCACSGSLKYAHRKCVQHWCNEKGDITCEICHQ Y+P 
Sbjct: 55  PLIQGAECRICQEEDSVSNLENPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPG 114

Query: 118 YTAPP-PPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASG 176
           YTAPP PP  E+T I+IGGGWTISGT LDLRDPRLLAIAEAER FLEAEYD+Y ASNASG
Sbjct: 115 YTAPPRPPHSEDTGIDIGGGWTISGTQLDLRDPRLLAIAEAERHFLEAEYDDYAASNASG 174

Query: 177 SAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINIL 236
           +AFCRS ALILMALLLLRHAL   D+DGEDDVS FFSLFLLRAAGFLLPCYIMAWAI+IL
Sbjct: 175 AAFCRSVALILMALLLLRHALTATDSDGEDDVSAFFSLFLLRAAGFLLPCYIMAWAISIL 234

Query: 237 QRRRQRQEAAALAATQVAFVLQSGQRRGLQFTIASGSNLTATQPQEPV 284
           QRRRQRQEAAALAATQVAFVLQSGQ+RGLQFTIA G   T T  QEPV
Sbjct: 235 QRRRQRQEAAALAATQVAFVLQSGQQRGLQFTIAPGP--TVTPHQEPV 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255562860|ref|XP_002522435.1| membrane associated ring finger 1,8, putative [Ricinus communis] gi|223538320|gb|EEF39927.1| membrane associated ring finger 1,8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224101351|ref|XP_002312245.1| predicted protein [Populus trichocarpa] gi|222852065|gb|EEE89612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356577396|ref|XP_003556812.1| PREDICTED: uncharacterized protein LOC100817542 [Glycine max] Back     alignment and taxonomy information
>gi|356499805|ref|XP_003518727.1| PREDICTED: uncharacterized protein LOC100779674 [Glycine max] Back     alignment and taxonomy information
>gi|356498276|ref|XP_003517979.1| PREDICTED: uncharacterized protein LOC100812998 [Glycine max] Back     alignment and taxonomy information
>gi|356519854|ref|XP_003528584.1| PREDICTED: uncharacterized protein LOC100814390 [Glycine max] Back     alignment and taxonomy information
>gi|449495926|ref|XP_004159987.1| PREDICTED: uncharacterized LOC101203306 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547401|ref|XP_002514758.1| membrane associated ring finger 1,8, putative [Ricinus communis] gi|223546362|gb|EEF47864.1| membrane associated ring finger 1,8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225457415|ref|XP_002284912.1| PREDICTED: uncharacterized protein LOC100250124 [Vitis vinifera] gi|297733975|emb|CBI15222.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2079112288 AT3G47550 [Arabidopsis thalian 0.947 0.934 0.537 2.9e-71
TAIR|locus:2154109307 AT5G62460 [Arabidopsis thalian 0.943 0.872 0.491 5.1e-67
TAIR|locus:2012477265 AT1G14260 [Arabidopsis thalian 0.792 0.849 0.566 2.7e-61
TAIR|locus:2056710275 AT2G02960 [Arabidopsis thalian 0.633 0.654 0.594 9.9e-55
TAIR|locus:504956090259 AT2G01275 [Arabidopsis thalian 0.767 0.841 0.370 4.4e-36
TAIR|locus:2144441259 AT5G38070 [Arabidopsis thalian 0.732 0.803 0.385 6.9e-31
TAIR|locus:505006426218 PIT1 "pitchoun 1" [Arabidopsis 0.602 0.784 0.340 1e-22
ZFIN|ZDB-GENE-070912-276339 si:ch211-283p23.1 "si:ch211-28 0.376 0.315 0.341 1.5e-10
ZFIN|ZDB-GENE-070112-1712231 zgc:158785 "zgc:158785" [Danio 0.274 0.337 0.333 1.3e-09
UNIPROTKB|B9EJE7138 MARCH3 "Membrane-associated ri 0.176 0.362 0.42 3.3e-09
TAIR|locus:2079112 AT3G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 149/277 (53%), Positives = 174/277 (62%)

Query:     1 MSDHVVLYVDRLIRPESVQEEGDG-AARETSGGVLEDEAGPSCSAGNDVDDEKVG---ED 56
             M+DH+ L  DRLI  ES+  E D  ++ E+S      +   S     +V  E      E+
Sbjct:     1 MADHLSLCTDRLITSESLDSEKDSDSSGESSYRPQGTDLASSSVNETEVPREYYAVADEE 60

Query:    57 EPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116
             EPLLQ  ECRICQEEDS  NLE PCAC+GSLKYAHRKCVQ WCNEKGDITCEICHQ Y+ 
Sbjct:    61 EPLLQSVECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQPYQH 120

Query:   117 NYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASG 176
              YTAPPPP  +ET I IG  W  +G PLDL DPR+LA+A AER FLEA+YDEY  +N+SG
Sbjct:   121 GYTAPPPPPPDETIIHIGDDWE-NGVPLDLTDPRILAMAAAERHFLEADYDEYSENNSSG 179

Query:   177 SAFCRSXXXXXXXXXXXXXXXXIP-DADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAINI 235
             +AFCRS                +  + D EDD + FFSLFLLRAAGFLLPCYIMAWAI I
Sbjct:   180 AAFCRSAALILMALLLLRDALNLTTNPDDEDDPTAFFSLFLLRAAGFLLPCYIMAWAIGI 239

Query:   236 LXXXXXXXXXXXXXXXXXXFVLQSG--QRRGLQFTIA 270
             L                  F++  G  QRRGL F +A
Sbjct:   240 LQRRRQRQEAAALAAAEVTFMIHGGGPQRRGLHFAVA 276
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2154109 AT5G62460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012477 AT1G14260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056710 AT2G02960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956090 AT2G01275 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144441 AT5G38070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006426 PIT1 "pitchoun 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-276 si:ch211-283p23.1 "si:ch211-283p23.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070112-1712 zgc:158785 "zgc:158785" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B9EJE7 MARCH3 "Membrane-associated ring finger (C3HC4) 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X1136
hypothetical protein (280 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
pfam12428118 pfam12428, DUF3675, Protein of unknown function (D 1e-59
smart0074449 smart00744, RINGv, The RING-variant domain is a C4 4e-20
pfam1290647 pfam12906, RINGv, RING-variant domain 9e-17
COG5183 1175 COG5183, SSM4, Protein involved in mRNA turnover a 3e-12
PHA02862156 PHA02862, PHA02862, 5L protein; Provisional 1e-05
PHA02825162 PHA02825, PHA02825, LAP/PHD finger-like protein; P 2e-05
>gnl|CDD|221572 pfam12428, DUF3675, Protein of unknown function (DUF3675) Back     alignment and domain information 
 Score =  185 bits (471), Expect = 1e-59
 Identities = 79/119 (66%), Positives = 86/119 (72%), Gaps = 3/119 (2%)

Query: 116 PNYTAPPPP-RLEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNA 174
           P YTAPP   +  ETAI I G W IS    DLRDPRLLA+AEAERQFLEAEYDEY A+N 
Sbjct: 1   PGYTAPPKLFQPGETAITIRGNWEISR--RDLRDPRLLAMAEAERQFLEAEYDEYAAANP 58

Query: 175 SGSAFCRSAALILMALLLLRHALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAI 233
           SG+A CRS ALI M LLLLRHAL +     +D   T F+L LLRAAG LLPCYIMA AI
Sbjct: 59  SGAACCRSVALIFMVLLLLRHALPVVLGGADDYSFTLFTLLLLRAAGILLPCYIMARAI 117

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with pfam00097. There are two completely conserved residues (R and L) that may be functionally important. Length = 118
>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain Back     alignment and domain information
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|165197 PHA02862, PHA02862, 5L protein; Provisional Back     alignment and domain information
>gnl|CDD|177491 PHA02825, PHA02825, LAP/PHD finger-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
PF12428118 DUF3675: Protein of unknown function (DUF3675) ; I 100.0
KOG1609323 consensus Protein involved in mRNA turnover and st 99.83
PHA02825162 LAP/PHD finger-like protein; Provisional 99.8
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 99.68
PHA02862156 5L protein; Provisional 99.67
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 99.64
COG5183 1175 SSM4 Protein involved in mRNA turnover and stabili 99.51
KOG3053293 consensus Uncharacterized conserved protein [Funct 99.44
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.12
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 96.36
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 95.95
PHA02929238 N1R/p28-like protein; Provisional 95.48
cd0016245 RING RING-finger (Really Interesting New Gene) dom 95.4
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.2
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 94.43
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 94.3
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 94.19
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 93.96
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 93.4
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 92.91
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 92.49
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 91.42
smart0050463 Ubox Modified RING finger domain. Modified RING fi 91.38
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 90.14
PHA02926242 zinc finger-like protein; Provisional 90.11
COG52191525 Uncharacterized conserved protein, contains RING Z 90.02
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 87.33
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 86.72
KOG149384 consensus Anaphase-promoting complex (APC), subuni 85.57
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 85.39
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 83.55
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 83.09
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 83.04
PLN02189 1040 cellulose synthase 82.68
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 82.57
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information 
Probab=100.00  E-value=4.3e-43  Score=291.09  Aligned_cols=117  Identities=66%  Similarity=1.020  Sum_probs=112.3

Q ss_pred             cccCCCCCCC-cchhhhhcccceeeeCccCCCCChHHHHHHHHHHhhhhcccccccccCCCcceehHHHHHHHHHHHHHH
Q 023293          116 PNYTAPPPPR-LEETAIEIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYDASNASGSAFCRSAALILMALLLLR  194 (284)
Q Consensus       116 ~~yt~ppp~~-~~~~~i~i~~~w~i~g~~ldl~~pr~l~~~~~e~~~~e~~~~~y~~~~~~~a~~CRs~ali~m~lLlLR  194 (284)
                      ++||+|||+. ++++.|+|+++|++  +++|++||++++|+++|++|+|+||+||+.+|++|++||||+|||||+|||||
T Consensus         1 PgYTaPp~~~~~~~~~i~ir~~we~--~~~d~~~~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllR   78 (118)
T PF12428_consen    1 PGYTAPPKKFQPGETAIDIRGNWEI--SRRDLRDPRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLR   78 (118)
T ss_pred             CCCCCCCCCCCcCccceEecCCccc--cccCccchhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHH
Confidence            6899999988 78899999999994  46899999999999999999999999999999999999999999999999999


Q ss_pred             HHccccCCCCCCchHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 023293          195 HALAIPDADGEDDVSTFFSLFLLRAAGFLLPCYIMAWAIN  234 (284)
Q Consensus       195 h~l~~~~~~~e~~~~~~~tl~llRaaGillP~Yi~~~~i~  234 (284)
                      |+++++++|+|+|+|++||+++||++|||||||||+|+|+
T Consensus        79 hal~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais  118 (118)
T PF12428_consen   79 HALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS  118 (118)
T ss_pred             HHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999974

The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification] Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification] Back     alignment and domain information
>KOG3053 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2d8s_A80 Solution Structure Of The Ring Domain Of The Human 8e-05
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human Cellular Modulator Of Immune Recognition Protein Length = 80 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 65  CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
           CRIC  E D  + L TPC C+GSL + H+ C+Q W        CE+C  ++
Sbjct: 18  CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 6e-22
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 7e-22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
 Score = 86.5 bits (214), Expect = 6e-22
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 39  GPSCSAGNDVDDEKVGEDEPLLQVGECRICQ-EEDSINNLETPCACSGSLKYAHRKCVQH 97
           G S S+G  +        + +     CRIC  E D  + L TPC C+GSL + H+ C+Q 
Sbjct: 1   GSSGSSGTSITPS----SQDI-----CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQ 51

Query: 98  WCNEKGDITCEICHQQYKPNYTAPPP 123
           W        CE+C  ++        P
Sbjct: 52  WIKSSDTRCCELCKYEFIMETKLSGP 77
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 99.75
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 99.64
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 97.7
2ect_A78 Ring finger protein 126; metal binding protein, st 97.63
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 97.63
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 97.45
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 97.26
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 97.23
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 97.2
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 97.18
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.12
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 97.08
2ecm_A55 Ring finger and CHY zinc finger domain- containing 97.07
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 97.02
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 96.96
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 96.93
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 96.91
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 96.91
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 96.79
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 96.77
2ecw_A85 Tripartite motif-containing protein 30; metal bind 96.64
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 96.63
2ysl_A73 Tripartite motif-containing protein 31; ring-type 96.62
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 96.37
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 96.3
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 96.29
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 96.24
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 96.13
2ysj_A63 Tripartite motif-containing protein 31; ring-type 96.02
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 95.95
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 95.77
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 95.6
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 95.58
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 95.41
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 95.35
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 95.22
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 95.06
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 95.04
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 94.84
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 94.71
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 94.71
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 94.38
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 94.12
1z6u_A150 NP95-like ring finger protein isoform B; structura 93.81
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 93.66
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 93.39
3nw0_A238 Non-structural maintenance of chromosomes element 92.94
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 92.7
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 92.15
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 92.0
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 91.27
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 91.19
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 91.1
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 89.04
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 88.89
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 88.7
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 86.19
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 85.1
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 84.82
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 84.34
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 84.11
2f42_A179 STIP1 homology and U-box containing protein 1; cha 81.16
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 80.16
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
Probab=99.75  E-value=3.3e-19  Score=130.29  Aligned_cols=54  Identities=35%  Similarity=0.820  Sum_probs=49.0

Q ss_pred             CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293           62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP  116 (284)
Q Consensus        62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~  116 (284)
                      ...||||+++.+ ++++.||+|+||++|+|+.||++|++.|++..||+|+++|++
T Consensus         6 ~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            6 VPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            358999998753 468999999999999999999999999999999999999975
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 7e-10
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.003
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 51.8 bits (123), Expect = 7e-10
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 55  EDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
           ED P      C IC EE   N     C C+G L+  HR C+  W     +  C+IC   Y
Sbjct: 4   EDVP-----VCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

Query: 115 K 115
            
Sbjct: 58  N 58
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 99.48
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.72
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.64
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.25
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.23
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.56
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 96.55
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 96.4
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 95.23
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 95.22
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 94.13
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 93.43
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 92.78
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 89.05
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 84.5
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.48  E-value=6.3e-15  Score=104.65  Aligned_cols=53  Identities=34%  Similarity=0.814  Sum_probs=48.4

Q ss_pred             CceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293           63 GECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP  116 (284)
Q Consensus        63 ~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~  116 (284)
                      ..|+||+++.+ ++++.||.|+|+.+++|+.||++|++.+++.+|++|+++|++
T Consensus         7 ~~C~IC~~~~~-~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           7 PVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCccCCccCC-CceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            38999998754 468899999999999999999999999999999999999975
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure