Citrus Sinensis ID: 023305

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----

MMQGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL

ccccccccHHHHHHHHHcccccEEccccHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccEEEEEEEEEEEEEEccccccccccccEEEEcHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHcccccEEEEccHHHHHHHccHHHHcccccccccEEEEEEEEccccccccccccEEEEEEEEcccccHHHHHHHHHHHccccEEcccccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEccccccc

cccccccccHHHHHHHHcccccccccHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHccccEEEEEEEEEEEEEEEEcccccHHHHHEEcccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHccccccEEEccHHHHHHHcHHHHHHHccccccccEEEEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHEHccccccccc

mmqglpgsfsedaalkaypkcetvpcdefeDTFKAVELWLADkavlpiensssgsihrnYDLLLRHRLHIVGEVQLAANFCLlalpgikadqlkrvlshpqalassDIVLTQLGvarenvddTASAAQYVASNGLRDAGAVASARAAEIYGLNIladriqdepdNITRFLVlardpiiprtdklfKTSIVFtldegpgvLFKALAVFALREINLTkiesrpqrkrplrvvddsnngtakyFDYLFYIdfeasmadpraQNALGHLQEFATFLRVLgcypmdatl

mmqglpgsfsedAALKAYPKCETVPCDEFEDTFKAVELWLADKAvlpiensssgsiHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNiladriqdePDNITRFLVlardpiiprtdkLFKTSIVFTLDEGPGVLFKALAVFALREInltkiesrpqrkrplrvvddsnngtaKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL

MMQGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDagavasaraaEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL

**************LKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKI****************NNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYP*****

********FSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL

*MQGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPM****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		284	2.2.26 [Sep-21-2011]
Q9SA96		392	Arogenate dehydratase/pre	yes	no	0.985	0.714	0.725	1e-121
Q9SGD6		413	Arogenate dehydratase/pre	no	no	0.982	0.675	0.683	1e-109
Q9ZUY3		424	Arogenate dehydratase 3,	no	no	0.989	0.662	0.664	1e-107
Q9SSE7		381	Arogenate dehydratase/pre	no	no	0.975	0.727	0.695	1e-106
O22241		424	Arogenate dehydratase 4,	no	no	0.989	0.662	0.652	1e-103
Q9FNJ8		425	Arogenate dehydratase 5,	no	no	0.989	0.661	0.649	3e-97
O67085		362	P-protein OS=Aquifex aeol	yes	no	0.904	0.709	0.376	3e-38
P43900		385	P-protein OS=Haemophilus	yes	no	0.929	0.685	0.318	2e-36
Q8K9F8		385	P-protein OS=Buchnera aph	yes	no	0.929	0.685	0.289	1e-34
Q58054		272	Prephenate dehydratase OS	yes	no	0.823	0.860	0.373	7e-34

>sp\|Q9SA96\|AROD1_ARATH Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1	Back alignment and function desciption

 Score =  433 bits (1113), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/280 (72%), Positives = 239/280 (85%)

Query: 2   MQGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD 61
            QG+PG++SE AALKA+P CETVPC++FE  F+AVELWL DKAVLPIENS  GSIHRNYD
Sbjct: 110 FQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYD 169

Query: 62  LLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVD 121
           LLLRHRLHIV EV L  N CLL +PG+K + +K VLSHPQAL      L  LG+ R +  
Sbjct: 170 LLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQRISAK 229

Query: 122 DTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRT 181
           DTA+AAQ V+S+G  D GA+AS RAA IYGL+ILA+ IQD+ +N+TRFL+LAR+P+IPRT
Sbjct: 230 DTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREPMIPRT 289

Query: 182 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYF 241
           D+ +KTSIVF+L+EGPGVLFKALAVFALR INL+KIESRPQR+RPLRVVD SNNG+AKYF
Sbjct: 290 DRPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKYF 349

Query: 242 DYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 281
           DYLFYIDFEASMAD RAQ+ALGHLQEFA+F+R+LGCYPMD
Sbjct: 350 DYLFYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMD 389

Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 1

>sp\|Q9SGD6\|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZUY3\|AROD3_ARATH Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1	Back alignment and function description

>sp\|Q9SSE7\|AROD2_ARATH Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1	Back alignment and function description

>sp\|O22241\|AROD4_ARATH Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1	Back alignment and function description

>sp\|Q9FNJ8\|AROD5_ARATH Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1	Back alignment and function description

>sp\|O67085\|PHEA_AQUAE P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=4 SV=1	Back alignment and function description

>sp\|P43900\|PHEA_HAEIN P-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pheA PE=4 SV=1	Back alignment and function description

>sp\|Q8K9F8\|PHEA_BUCAP P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=pheA PE=4 SV=1	Back alignment and function description

>sp\|Q58054\|PHEA_METJA Prephenate dehydratase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pheA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		284
297739158		418	unnamed protein product [Vitis vinifera]	0.985	0.669	0.864	1e-142
225447035		395	PREDICTED: arogenate dehydratase/prephen	0.985	0.708	0.864	1e-142
255577573		373	prephenate dehydratase, putative [Ricinu	0.992	0.756	0.840	1e-138
449522402		388	PREDICTED: arogenate dehydratase/prephen	0.982	0.719	0.824	1e-133
449468368		388	PREDICTED: arogenate dehydratase/prephen	0.982	0.719	0.824	1e-133
148909434		402	unknown [Picea sitchensis]	0.989	0.699	0.797	1e-132
357453373		375	Arogenate dehydratase/prephenate dehydra	0.992	0.752	0.776	1e-128
224113661		400	arogenate/prephenate dehydratase [Populu	0.992	0.705	0.765	1e-127
168027712		307	predicted protein [Physcomitrella patens	0.989	0.915	0.793	1e-127
255554867		403	prephenate dehydratase, putative [Ricinu	0.992	0.699	0.758	1e-127

>gi\|297739158\|emb\|CBI28809.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/280 (86%), Positives = 265/280 (94%)

Query: 3   QGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL 62
           +G+PG++SEDAALKAYP CETVPCDEFED FKAVELWLA+KAVLPIENS  GSIHRNYDL
Sbjct: 137 KGVPGAYSEDAALKAYPHCETVPCDEFEDAFKAVELWLAEKAVLPIENSLGGSIHRNYDL 196

Query: 63  LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDD 122
           LLRHRLHIVGEVQLA N CLLA+PG+  DQL+RVLSHPQALA SDI+L++LGV+RENVDD
Sbjct: 197 LLRHRLHIVGEVQLAVNLCLLAIPGVGIDQLRRVLSHPQALAQSDIILSKLGVSRENVDD 256

Query: 123 TASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTD 182
           +A AAQYVAS+GLRDAG VASARAAEIYGLNILA+RIQD+ DNITRFLVLARDPIIPRT+
Sbjct: 257 SAGAAQYVASHGLRDAGVVASARAAEIYGLNILAERIQDDFDNITRFLVLARDPIIPRTN 316

Query: 183 KLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFD 242
           KLFKTSIVFTL+EGPGVLFKALAVFALR+INLTKIESRPQRK+PLRVVDDSN G+AKYFD
Sbjct: 317 KLFKTSIVFTLEEGPGVLFKALAVFALRDINLTKIESRPQRKKPLRVVDDSNTGSAKYFD 376

Query: 243 YLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDA 282
           YLFYIDFEASMA+PRAQ AL HLQEFATFLRVLGCYPMD+
Sbjct: 377 YLFYIDFEASMAEPRAQTALAHLQEFATFLRVLGCYPMDS 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225447035\|ref\|XP_002269463.1\| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255577573\|ref\|XP_002529664.1\| prephenate dehydratase, putative [Ricinus communis] gi\|223530844\|gb\|EEF32706.1\| prephenate dehydratase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449522402\|ref\|XP_004168215.1\| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449468368\|ref\|XP_004151893.1\| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|148909434\|gb\|ABR17815.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

>gi\|357453373\|ref\|XP_003596963.1\| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] gi\|124360522\|gb\|ABN08532.1\| Prephenate dehydratase with ACT region [Medicago truncatula] gi\|355486011\|gb\|AES67214.1\| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224113661\|ref\|XP_002316535.1\| arogenate/prephenate dehydratase [Populus trichocarpa] gi\|222859600\|gb\|EEE97147.1\| arogenate/prephenate dehydratase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|168027712\|ref\|XP_001766373.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162682282\|gb\|EDQ68701.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|255554867\|ref\|XP_002518471.1\| prephenate dehydratase, putative [Ricinus communis] gi\|223542316\|gb\|EEF43858.1\| prephenate dehydratase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		284
TAIR\|locus:2027332		392	ADT1 "arogenate dehydratase 1"	0.982	0.711	0.702	8.6e-104
TAIR\|locus:2199963		413	ADT6 "arogenate dehydratase 6"	0.989	0.680	0.657	8.2e-99
TAIR\|locus:2091127		381	ADT2 "arogenate dehydratase 2"	0.975	0.727	0.670	1.8e-96
TAIR\|locus:2042021		424	PD1 "prephenate dehydratase 1"	0.989	0.662	0.639	3.7e-96
TAIR\|locus:2101630		424	ADT4 "arogenate dehydratase 4"	0.989	0.662	0.624	1.6e-93
TAIR\|locus:2162459		425	ADT5 "arogenate dehydratase 5"	0.989	0.661	0.621	2.1e-91
TIGR_CMR\|DET_0461		358	DET_0461 "chorismate mutase/pr	0.919	0.729	0.345	8.9e-38
TIGR_CMR\|SPO_3539		284	SPO_3539 "prephenate dehydrata	0.926	0.926	0.348	9.5e-34
UNIPROTKB\|Q9KU24		391	VC_0705 "Chorismate mutase/pre	0.929	0.675	0.339	1.2e-33
TIGR_CMR\|VC_0705		391	VC_0705 "chorismate mutase/pre	0.929	0.675	0.339	1.2e-33

TAIR\|locus:2027332 ADT1 "arogenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 196/279 (70%), Positives = 231/279 (82%)

Query:     3 QGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL 62
             QG+PG++SE AALKA+P CETVPC++FE  F+AVELWL DKAVLPIENS  GSIHRNYDL
Sbjct:   111 QGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDL 170

Query:    63 LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDD 122
             LLRHRLHIV EV L  N CLL +PG+K + +K VLSHPQAL      L  LG+ R +  D
Sbjct:   171 LLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQRISAKD 230

Query:   123 TASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTD 182
             TA+AAQ V+S+G  D           IYGL+ILA+ IQD+ +N+TRFL+LAR+P+IPRTD
Sbjct:   231 TATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREPMIPRTD 290

Query:   183 KLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFD 242
             + +KTSIVF+L+EGPGVLFKALAVFALR INL+KIESRPQR+RPLRVVD SNNG+AKYFD
Sbjct:   291 RPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKYFD 350

Query:   243 YLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 281
             YLFYIDFEASMAD RAQ+ALGHLQEFA+F+R+LGCYPMD
Sbjct:   351 YLFYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMD 389

GO:0004664 "prephenate dehydratase activity" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0009094 "L-phenylalanine biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0047769 "arogenate dehydratase activity" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR\|locus:2199963 ADT6 "arogenate dehydratase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091127 ADT2 "arogenate dehydratase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2042021 PD1 "prephenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2101630 ADT4 "arogenate dehydratase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162459 ADT5 "arogenate dehydratase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0461 DET_0461 "chorismate mutase/prephenate dehydratase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_3539 SPO_3539 "prephenate dehydratase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KU24 VC_0705 "Chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_0705 VC_0705 "chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3Q7Q1	PHEA_MYCSJ	4, ., 2, ., 1, ., 5, 1	0.3156	0.9084	0.8190	yes	no
Q1B1U6	PHEA_MYCSS	4, ., 2, ., 1, ., 5, 1	0.3156	0.9084	0.8190	yes	no
A1TGX7	PHEA_MYCVP	4, ., 2, ., 1, ., 5, 1	0.3333	0.9154	0.8333	yes	no
A1UNA3	PHEA_MYCSK	4, ., 2, ., 1, ., 5, 1	0.3156	0.9084	0.8190	yes	no
P43909	PHEA_LACLM	4, ., 2, ., 1, ., 5, 1	0.3263	0.9119	0.9283	yes	no
A4T6G3	PHEA_MYCGI	4, ., 2, ., 1, ., 5, 1	0.3209	0.9260	0.8511	yes	no
Q9SA96	AROD1_ARATH	4, ., 2, ., 1, ., 9, 1	0.725	0.9859	0.7142	yes	no
B1MEG8	PHEA_MYCA9	4, ., 2, ., 1, ., 5, 1	0.3034	0.9330	0.8603	yes	no
Q58054	PHEA_METJA	4, ., 2, ., 1, ., 5, 1	0.3735	0.8239	0.8602	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.91	0.946
3rd Layer	4.2.1	0.963
4th Layer	4.2.1.51	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025888001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (395 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026409001	RecName- Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; (521 aa)	•		•	0.686
	GSVIVG00036740001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)	•		•	0.637
	GSVIVG00029073001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (396 aa)	•		•	0.537
	GSVIVG00005682001	SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa)	•		•	0.528
	GSVIVG00018199001	RecName- Full=Chorismate synthase; EC=4.2.3.5; (348 aa)	•	•	•	0.495
	GSVIVG00024523001	RecName- Full=Chorismate synthase; EC=4.2.3.5; (403 aa)	•	•	•	0.471
	GSVIVG00030599001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa)	•		•	0.440
	GSVIVG00016051001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (389 aa)	•		•	0.429
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)			•	0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		284
PLN02317		382	PLN02317, PLN02317, arogenate dehydratase	0.0
COG0077		279	COG0077, PheA, Prephenate dehydratase [Amino acid	1e-97
PRK11898		283	PRK11898, PRK11898, prephenate dehydratase; Provis	6e-77
PRK11899		279	PRK11899, PRK11899, prephenate dehydratase; Provis	2e-74
pfam00800		181	pfam00800, PDT, Prephenate dehydratase	3e-72
PRK10622		386	PRK10622, pheA, bifunctional chorismate mutase/pre	4e-47
cd04905		80	cd04905, ACT_CM-PDT, C-terminal ACT domain of the	2e-34
cd04880		75	cd04880, ACT_AAAH-PDT-like, ACT domain of the nonh	2e-27
cd04904		74	cd04904, ACT_AAAH, ACT domain of the nonheme iron-	1e-09
TIGR01268		436	TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydrox	1e-06
cd04931		90	cd04931, ACT_PAH, ACT domain of the nonheme iron-d	2e-06
cd04930		115	cd04930, ACT_TH, ACT domain of the nonheme iron-de	7e-05
cd04929		74	cd04929, ACT_TPH, ACT domain of the nonheme iron-d	1e-04
cd02116		60	cd02116, ACT, ACT domains are commonly involved in	0.001

>gnl\|CDD\|215181 PLN02317, PLN02317, arogenate dehydratase	Back alignment and domain information

 Score =  560 bits (1446), Expect = 0.0
 Identities = 222/282 (78%), Positives = 253/282 (89%)

Query: 3   QGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL 62
           QG+PG++SE AA KAYP CE VPC++FE  F+AVELWLAD+AVLPIENS  GSIHRNYDL
Sbjct: 100 QGVPGAYSEAAARKAYPNCEAVPCEQFEAAFQAVELWLADRAVLPIENSLGGSIHRNYDL 159

Query: 63  LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDD 122
           LLRHRLHIVGEVQL  + CLLALPG++ ++LKRV+SHPQALA  +  LT+LGV RE VDD
Sbjct: 160 LLRHRLHIVGEVQLPVHHCLLALPGVRKEELKRVISHPQALAQCENTLTKLGVVREAVDD 219

Query: 123 TASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTD 182
           TA AA+ VA+NGLRD  A+ASARAAE+YGL+ILA+ IQD+ DN+TRFL+LAR+PIIPRTD
Sbjct: 220 TAGAAKMVAANGLRDTAAIASARAAELYGLDILAEGIQDDSDNVTRFLMLAREPIIPRTD 279

Query: 183 KLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFD 242
           + FKTSIVF+L+EGPGVLFKALAVFALR+INLTKIESRPQRKRPLRVVDDSN+GTAKYFD
Sbjct: 280 RPFKTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFD 339

Query: 243 YLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDATL 284
           YLFY+DFEASMADPRAQNAL HLQEFATFLRVLG YPMD T 
Sbjct: 340 YLFYVDFEASMADPRAQNALAHLQEFATFLRVLGSYPMDMTP 381

Length = 382

>gnl\|CDD\|223155 COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|237014 PRK11899, PRK11899, prephenate dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|216127 pfam00800, PDT, Prephenate dehydratase	Back alignment and domain information

>gnl\|CDD\|182594 PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|153177 cd04905, ACT_CM-PDT, C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme	Back alignment and domain information

>gnl\|CDD\|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)	Back alignment and domain information

>gnl\|CDD\|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)	Back alignment and domain information

>gnl\|CDD\|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric form	Back alignment and domain information

>gnl\|CDD\|153203 cd04931, ACT_PAH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)	Back alignment and domain information

>gnl\|CDD\|153202 cd04930, ACT_TH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)	Back alignment and domain information

>gnl\|CDD\|153201 cd04929, ACT_TPH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes	Back alignment and domain information

>gnl\|CDD\|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		284
COG0077		279	PheA Prephenate dehydratase [Amino acid transport	100.0
PRK11899		279	prephenate dehydratase; Provisional	100.0
PLN02317		382	arogenate dehydratase	100.0
PRK10622		386	pheA bifunctional chorismate mutase/prephenate deh	100.0
PRK11898		283	prephenate dehydratase; Provisional	100.0
KOG2797		377	consensus Prephenate dehydratase [Amino acid trans	100.0
PF00800		181	PDT: Prephenate dehydratase Caution this is only a	100.0
cd04904		74	ACT_AAAH ACT domain of the nonheme iron-dependent,	99.89
cd04931		90	ACT_PAH ACT domain of the nonheme iron-dependent a	99.86
cd04930		115	ACT_TH ACT domain of the nonheme iron-dependent ar	99.85
cd04905		80	ACT_CM-PDT C-terminal ACT domain of the bifunction	99.85
cd04929		74	ACT_TPH ACT domain of the nonheme iron-dependent a	99.85
cd04880		75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	99.83
TIGR01268		436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	99.75
TIGR01270		464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	99.64
PRK06034		279	hypothetical protein; Provisional	99.19
PRK08818		370	prephenate dehydrogenase; Provisional	98.86
TIGR01269		457	Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric.	98.85
KOG3820		461	consensus Aromatic amino acid hydroxylase [Amino a	98.62
cd04886		73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	98.31
PF01842		66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.27
cd04882		65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.72
PRK06737		76	acetolactate synthase 1 regulatory subunit; Valida	97.7
cd04884		72	ACT_CBS C-terminal ACT domain of the cystathionine	97.63
PF13710		63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	97.56
cd04878		72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.55
cd04883		72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.53
cd04874		72	ACT_Af1403 N-terminal ACT domain of the yet unchar	97.47
PF13291		80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.29
cd02116		60	ACT ACT domains are commonly involved in specifica	97.27
cd04888		76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.26
PRK11152		76	ilvM acetolactate synthase 2 regulatory subunit; P	97.16
PRK11895		161	ilvH acetolactate synthase 3 regulatory subunit; R	97.15
cd04902		73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	97.14
cd04903		71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.13
TIGR00119		157	acolac_sm acetolactate synthase, small subunit. ac	97.12
cd04908		66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.07
cd04909		69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.06
cd04885		68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	97.05
PRK13562		84	acetolactate synthase 1 regulatory subunit; Provis	97.03
CHL00100		174	ilvH acetohydroxyacid synthase small subunit	97.03
cd04887		74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	96.96
cd04879		71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.93
cd04896		75	ACT_ACR-like_3 ACT domain-containing protein which	96.89
PRK08178		96	acetolactate synthase 1 regulatory subunit; Review	96.81
PRK04435		147	hypothetical protein; Provisional	96.69
cd04906		85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	96.63
cd04901		69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.56
cd04881		79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.56
PRK08198		404	threonine dehydratase; Provisional	96.51
cd04926		72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	96.29
cd04872		88	ACT_1ZPV ACT domain proteins similar to the yet un	96.25
PRK00194		90	hypothetical protein; Validated	96.17
PF13740		76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	96.17
cd04870		75	ACT_PSP_1 CT domains found N-terminal of phosphose	96.16
cd04873		70	ACT_UUR-ACR-like ACT domains of the bacterial sign	96.07
cd04899		70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	96.05
TIGR01127		380	ilvA_1Cterm threonine dehydratase, medium form. A	96.04
PRK08577		136	hypothetical protein; Provisional	96.04
cd04877		74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.01
cd04876		71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.96
cd04889		56	ACT_PDH-BS-like C-terminal ACT domain of the monof	95.9
cd04895		72	ACT_ACR_1 ACT domain-containing protein which is c	95.86
PRK06382		406	threonine dehydratase; Provisional	95.82
cd04875		74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	95.47
cd04869		81	ACT_GcvR_2 ACT domains that comprise the Glycine C	95.3
COG4492		150	PheB ACT domain-containing protein [General functi	95.19
COG2061		170	ACT-domain-containing protein, predicted allosteri	95.01
PRK07334		403	threonine dehydratase; Provisional	94.99
PRK08526		403	threonine dehydratase; Provisional	94.75
PRK08639		420	threonine dehydratase; Validated	94.24
cd04893		77	ACT_GcvR_1 ACT domains that comprise the Glycine C	94.03
cd04900		73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	94.02
TIGR02079		409	THD1 threonine dehydratase. This model represents	93.87
COG2716		176	GcvR Glycine cleavage system regulatory protein [A	93.79
TIGR01124		499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	93.49
cd04897		75	ACT_ACR_3 ACT domain-containing protein which is c	93.45
PRK11589		190	gcvR glycine cleavage system transcriptional repre	93.41
COG0440		163	IlvH Acetolactate synthase, small (regulatory) sub	93.21
COG4747		142	ACT domain-containing protein [General function pr	93.0
COG3830		90	ACT domain-containing protein [Signal transduction	92.64
cd04927		76	ACT_ACR-like_2 Second ACT domain, of a novel type	92.25
cd04935		75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	92.18
cd04907		81	ACT_ThrD-I_2 Second of two tandem C-terminal ACT d	92.11
cd04912		75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	91.61
cd04932		75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	91.44
PRK09224		504	threonine dehydratase; Reviewed	91.2
COG1707		218	ACT domain-containing protein [General function pr	91.17
PRK12483		521	threonine dehydratase; Reviewed	91.02
PRK13010		289	purU formyltetrahydrofolate deformylase; Reviewed	90.53
PRK13011		286	formyltetrahydrofolate deformylase; Reviewed	90.49
PLN02550		591	threonine dehydratase	89.68
cd04925		74	ACT_ACR_2 ACT domain-containing protein which is c	89.31
cd04934		73	ACT_AK-Hom3_1 CT domains located C-terminal to the	89.01
PRK06349		426	homoserine dehydrogenase; Provisional	88.96
cd04891		61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	88.6
PRK11092		702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	88.14
PRK11151		305	DNA-binding transcriptional regulator OxyR; Provis	87.89
PRK06545		359	prephenate dehydrogenase; Validated	86.82
COG0317		701	SpoT Guanosine polyphosphate pyrophosphohydrolases	86.81
PRK11790		409	D-3-phosphoglycerate dehydrogenase; Provisional	86.81
PF00497		225	SBP_bac_3: Bacterial extracellular solute-binding	86.37
PF00585		91	Thr_dehydrat_C: C-terminal regulatory domain of Th	86.28
cd08445		203	PBP2_BenM_CatM_CatR The C-terminal substrate bindi	85.54
PRK06027		286	purU formyltetrahydrofolate deformylase; Reviewed	85.29
cd08452		197	PBP2_AlsR The C-terminal substrate binding domain	84.55
PRK10872		743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	83.97
TIGR00691		683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	83.64
TIGR01693		850	UTase_glnD [Protein-PII] uridylyltransferase. This	83.27
cd04913		75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	82.84
cd08453		200	PBP2_IlvR The C-terminal substrate binding domain	82.76
TIGR00719		208	sda_beta L-serine dehydratase, iron-sulfur-depende	82.22
cd08411		200	PBP2_OxyR The C-terminal substrate-binding domain	81.17
PRK05092		931	PII uridylyl-transferase; Provisional	81.03

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.3e-93  Score=648.40  Aligned_cols=268  Identities=47%  Similarity=0.701  Sum_probs=254.3

Q ss_pred             CccCCCCcHHHHHHHhhCCC-CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeee
Q 023305            1 MMQGLPGSFSEDAALKAYPK-CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAAN   79 (284)
Q Consensus         1 aylGp~GtfS~~Aa~~~f~~-~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~   79 (284)
                      |||||+|||||+||+++|++ .+..||+||+|||++|++|++||||||||||++|+|++|+|+|...+|.|+||+.+||+
T Consensus         6 ayLGP~Gtfs~~Aa~~~f~~~~~~~p~~ti~evf~ave~g~aD~gVVPIENS~eG~V~~tlDlL~~~~l~IvgE~~lpI~   85 (279)
T COG0077           6 AYLGPEGTFSEQAARKLFGSGAELLPCSTIEDVFKAVENGEADYGVVPIENSIEGSVNETLDLLAETDLQIVGEIVLPIH   85 (279)
T ss_pred             EEeCCCccHHHHHHHHhccccceeccCCCHHHHHHHHHcCCCceEEEEeeecCCcchHHHHHhhccCCcEEEEEEEEEEE
Confidence            69999999999999999998 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeecCCCCcCCccEEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeec
Q 023305           80 FCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILAD  157 (284)
Q Consensus        80 ~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~  157 (284)
                      |||+++++.++++|++|||||||++||++||+++  +++.++++|||+||+++++.++...|||||+.||++|||++|++
T Consensus        86 h~L~~~~~~~l~~Ik~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~YgL~il~~  165 (279)
T COG0077          86 HCLLVKGGVDLEEIKTVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELYGLDILAE  165 (279)
T ss_pred             EEEEecCCCChhhCeEEEeCcHHHHHHHHHHHHcCCCceEEEcCCHHHHHHHHHhCCCcCeeEEcCHHHHHHcCcHhHhh
Confidence            9999998889999999999999999999999997  69999999999999999998888999999999999999999999


Q ss_pred             cccCCCCCeeEEEEEeeCCCCCCCCCCceEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCC
Q 023305          158 RIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGT  237 (284)
Q Consensus       158 ~I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~  237 (284)
                      ||||.++|+|||+||+|........+..||||+|+++|+||+|+++|++|+.||||||||||||+++.+           
T Consensus       166 ~I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~-----------  234 (279)
T COG0077         166 NIEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGL-----------  234 (279)
T ss_pred             cccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCC-----------
Confidence            999999999999999985211112245799999999999999999999999999999999999999874           


Q ss_pred             CccceeEEEEEeecCCCcHHHHHHHHHHHhcCCceEEEceeeCCC
Q 023305          238 AKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDA  282 (284)
Q Consensus       238 ~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGsYp~~~  282 (284)
                         |+|+||||++||.+|+.+++||++|++.+.++|+|||||...
T Consensus       235 ---~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~kilGsYp~~~  276 (279)
T COG0077         235 ---GEYLFFIDIEGHIDDPLVKEALEELKEITEFVKILGSYPSAR  276 (279)
T ss_pred             ---eeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEEEeeccccc
Confidence               999999999999999999999999999999999999999864

>PRK11899 prephenate dehydratase; Provisional	Back alignment and domain information

>PLN02317 arogenate dehydratase	Back alignment and domain information

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional	Back alignment and domain information

>PRK11898 prephenate dehydratase; Provisional	Back alignment and domain information

>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]	Back alignment and domain information

>PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure	Back alignment and domain information

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)	Back alignment and domain information

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)	Back alignment and domain information

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)	Back alignment and domain information

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme	Back alignment and domain information

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes	Back alignment and domain information

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)	Back alignment and domain information

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form	Back alignment and domain information

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric	Back alignment and domain information

>PRK06034 hypothetical protein; Provisional	Back alignment and domain information

>PRK08818 prephenate dehydrogenase; Provisional	Back alignment and domain information

>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric	Back alignment and domain information

>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]	Back alignment and domain information

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains	Back alignment and domain information

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold	Back alignment and domain information

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains	Back alignment and domain information

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated	Back alignment and domain information

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria	Back alignment and domain information

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B	Back alignment and domain information

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)	Back alignment and domain information

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB	Back alignment and domain information

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a	Back alignment and domain information

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A	Back alignment and domain information

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme	Back alignment and domain information

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a	Back alignment and domain information

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional	Back alignment and domain information

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed	Back alignment and domain information

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)	Back alignment and domain information

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit	Back alignment and domain information

>TIGR00119 acolac_sm acetolactate synthase, small subunit	Back alignment and domain information

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains	Back alignment and domain information

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)	Back alignment and domain information

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)	Back alignment and domain information

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional	Back alignment and domain information

>CHL00100 ilvH acetohydroxyacid synthase small subunit	Back alignment and domain information

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains	Back alignment and domain information

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)	Back alignment and domain information

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)	Back alignment and domain information

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed	Back alignment and domain information

>PRK04435 hypothetical protein; Provisional	Back alignment and domain information

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)	Back alignment and domain information

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria	Back alignment and domain information

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains	Back alignment and domain information

>PRK08198 threonine dehydratase; Provisional	Back alignment and domain information

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)	Back alignment and domain information

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein	Back alignment and domain information

>PRK00194 hypothetical protein; Validated	Back alignment and domain information

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A	Back alignment and domain information

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)	Back alignment and domain information

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD	Back alignment and domain information

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains	Back alignment and domain information

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form	Back alignment and domain information

>PRK08577 hypothetical protein; Provisional	Back alignment and domain information

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein	Back alignment and domain information

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains	Back alignment and domain information

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate	Back alignment and domain information

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)	Back alignment and domain information

>PRK06382 threonine dehydratase; Provisional	Back alignment and domain information

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)	Back alignment and domain information

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains	Back alignment and domain information

>COG4492 PheB ACT domain-containing protein [General function prediction only]	Back alignment and domain information

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK07334 threonine dehydratase; Provisional	Back alignment and domain information

>PRK08526 threonine dehydratase; Provisional	Back alignment and domain information

>PRK08639 threonine dehydratase; Validated	Back alignment and domain information

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains	Back alignment and domain information

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains	Back alignment and domain information

>TIGR02079 THD1 threonine dehydratase	Back alignment and domain information

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form	Back alignment and domain information

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)	Back alignment and domain information

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional	Back alignment and domain information

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]	Back alignment and domain information

>COG4747 ACT domain-containing protein [General function prediction only]	Back alignment and domain information

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]	Back alignment and domain information

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)	Back alignment and domain information

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein	Back alignment and domain information

>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)	Back alignment and domain information

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII	Back alignment and domain information

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII	Back alignment and domain information

>PRK09224 threonine dehydratase; Reviewed	Back alignment and domain information

>COG1707 ACT domain-containing protein [General function prediction only]	Back alignment and domain information

>PRK12483 threonine dehydratase; Reviewed	Back alignment and domain information

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed	Back alignment and domain information

>PRK13011 formyltetrahydrofolate deformylase; Reviewed	Back alignment and domain information

>PLN02550 threonine dehydratase	Back alignment and domain information

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)	Back alignment and domain information

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains	Back alignment and domain information

>PRK06349 homoserine dehydrogenase; Provisional	Back alignment and domain information

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins	Back alignment and domain information

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional	Back alignment and domain information

>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional	Back alignment and domain information

>PRK06545 prephenate dehydrogenase; Validated	Back alignment and domain information

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional	Back alignment and domain information

>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane	Back alignment and domain information

>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role	Back alignment and domain information

>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold	Back alignment and domain information

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed	Back alignment and domain information

>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold	Back alignment and domain information

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	Back alignment and domain information

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family	Back alignment and domain information

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase	Back alignment and domain information

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins	Back alignment and domain information

>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold	Back alignment and domain information

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit	Back alignment and domain information

>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily	Back alignment and domain information

>PRK05092 PII uridylyl-transferase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		284
2qmx_B		283	The Crystal Structure Of L-Phe Inhibited Prephenate		1e-51
3mwb_A		313	The Crystal Structure Of Prephenate Dehydratase In		1e-25
2qmw_A		267	The Crystal Structure Of The Prephenate Dehydratase		1e-13
3luy_A		329	Putative Chorismate Mutase From Bifidobacterium Ado		5e-06

>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate Dehydratase From Chlorobium Tepidum Tls Length = 283

Back alignment and structure

Iteration: 1

Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/288 (43%), Positives = 157/288 (54%), Gaps = 33/288 (11%) Query: 3 QGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL 62 QG PG++SE AAL+ E +PC+ F+D F AV AD AV+PIENS GSIH+NYDL Sbjct: 12 QGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDL 68 Query: 63 LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALAS-SDIVLTQLGVARENVD 121 LLR + I+ E + CLL LPG + + SHPQAL + T + E Sbjct: 69 LLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFATHPQIRAEAAY 128 Query: 122 DTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLVLARD------ 175 DTA +A+ VA + + E+YGL+IL + + DE NITRF +A + Sbjct: 129 DTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAHENNPDIS 188 Query: 176 -----PIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVV 230 P + R KTSIVF L G LF+ALA FALR I+LTKIESRP RK Sbjct: 189 HLKVRPDVARQ----KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK------ 238 Query: 231 DDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCY 278 K F+YLFY DF D NAL +L+EFAT ++VLG Y Sbjct: 239 --------KAFEYLFYADFIGHREDQNVHNALENLREFATXVKVLGSY 278

PyMOL of 2qmx

>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex With L-Phe From Arthrobacter Aurescens To 2.0a Length = 313

Back alignment and structure

>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt) From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 267

Back alignment and structure

>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium Adolescentis Length = 329

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		284
2qmx_A		283	Prephenate dehydratase; APC86053, L-Phe inhibition	1e-133
3mwb_A		313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	1e-116
2qmw_A		267	PDT, prephenate dehydratase; APC85812, prephenate	1e-114
3luy_A		329	Probable chorismate mutase; structural genomics, A	1e-110
1phz_A		429	Protein (phenylalanine hydroxylase); aromatic amin	3e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Length = 283	Back alignment and structure

 Score =  376 bits (968), Expect = e-133
 Identities = 127/286 (44%), Positives = 164/286 (57%), Gaps = 25/286 (8%)

Query: 3   QGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL 62
           QG PG++SE AAL+     E +PC+ F+D F AV    AD AV+PIENS  GSIH+NYDL
Sbjct: 12  QGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDL 68

Query: 63  LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALA-SSDIVLTQLGVARENVD 121
           LLR  + I+ E  +    CLL LPG   +   + +SHPQAL    +   T   +  E   
Sbjct: 69  LLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAY 128

Query: 122 DTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRT 181
           DTA +A+ VA +  + A A+AS RA E+YGL+IL + + DE  NITRF  +A +     +
Sbjct: 129 DTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAHENNPDIS 188

Query: 182 DKLF-------KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 234
                      KTSIVF L    G LF+ALA FALR I+LTKIESRP RK+         
Sbjct: 189 HLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA-------- 240

Query: 235 NGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPM 280
                 F+YLFY DF     D    NAL +L+EFAT ++VLG Y +
Sbjct: 241 ------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280

PyMOL of 2qmx

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Length = 313	Back alignment and structure

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Length = 267	Back alignment and structure

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Length = 329	Back alignment and structure

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Length = 429	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		284
2qmx_A		283	Prephenate dehydratase; APC86053, L-Phe inhibition	100.0
3mwb_A		313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	100.0
2qmw_A		267	PDT, prephenate dehydratase; APC85812, prephenate	100.0
3luy_A		329	Probable chorismate mutase; structural genomics, A	100.0
1phz_A		429	Protein (phenylalanine hydroxylase); aromatic amin	99.85
2ko1_A		88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.32
1zpv_A		91	ACT domain protein; structural genomics, PSI, prot	97.13
2f1f_A		164	Acetolactate synthase isozyme III small subunit; f	96.99
2pc6_A		165	Probable acetolactate synthase isozyme III (small;	96.84
2fgc_A		193	Acetolactate synthase, small subunit; regulatory s	96.69
1y7p_A		223	Hypothetical protein AF1403; structural genomics,	94.75
2f06_A		144	Conserved hypothetical protein; structural genomic	94.3
2jhe_A		190	Transcription regulator TYRR; aromatic hydrocarbon	94.3
1wdn_A		226	GLNBP, glutamine binding protein; closed form, com	93.88
1u8s_A		192	Glycine cleavage system transcriptional repressor,	93.71
3h7m_A		234	Sensor protein; histidine kinase sensor domain, ki	93.4
2f06_A		144	Conserved hypothetical protein; structural genomic	93.07
4f3p_A		249	Glutamine-binding periplasmic protein; ssgcid, str	92.91
3mpk_A		267	Virulence sensor protein BVGS; venus flytrap, sens	92.7
3k4u_A		245	Binding component of ABC transporter; structural g	92.5
3kzg_A		237	Arginine 3RD transport system periplasmic binding	92.5
1xt8_A		292	Putative amino-acid transporter periplasmic solut	91.44
3del_B		242	Arginine binding protein; alpha and beta protein (	90.29
2nyi_A		195	Unknown protein; protein structure initiative, PSI	89.97
3lou_A		292	Formyltetrahydrofolate deformylase; structural gen	89.82
3qax_A		268	Probable ABC transporter arginine-binding protein;	88.9
3obi_A		288	Formyltetrahydrofolate deformylase; structural gen	88.44
3o1l_A		302	Formyltetrahydrofolate deformylase; structural gen	88.39
4h5g_A		243	Amino acid ABC superfamily ATP binding cassette tr	88.35
3i6v_A		232	Periplasmic His/Glu/Gln/Arg/opine family-binding;	87.9
3tql_A		227	Arginine-binding protein; transport and binding pr	87.6
3k5p_A		416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	87.57
1u8s_A		192	Glycine cleavage system transcriptional repressor,	87.36
3n0v_A		286	Formyltetrahydrofolate deformylase; formyl transfe	87.31
3nrb_A		287	Formyltetrahydrofolate deformylase; N-terminal ACT	86.6
3kbr_A		239	Cyclohexadienyl dehydratase; pseudomonas aeruginos	86.51
4i62_A		269	Amino acid ABC transporter, periplasmic amino ACI	86.4
2y7i_A		229	STM4351; arginine-binding protein; HET: ARG; 1.90A	85.13
2pyy_A		228	Ionotropic glutamate receptor bacterial homologue;	85.12
4dz1_A		259	DALS D-alanine transporter; D-alanine binding, per	84.95
1sc6_A		404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	84.18
2vha_A		287	Periplasmic binding transport protein; periplasmic	83.37
3hv1_A		268	Polar amino acid ABC uptake transporter substrate	82.92
1ii5_A		233	SLR1257 protein; membrane protein; HET: GLU; 1.60A	82.67
2yjp_A		291	Putative ABC transporter, periplasmic binding Pro	82.66
2nyi_A		195	Unknown protein; protein structure initiative, PSI	81.82
1ygy_A		529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	81.79
2yln_A		283	Putative ABC transporter, periplasmic binding Pro	80.63

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}	Back alignment and structure

Probab=100.00  E-value=9e-93  Score=650.84  Aligned_cols=263  Identities=48%  Similarity=0.730  Sum_probs=252.0

Q ss_pred             CccCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeee
Q 023305            1 MMQGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANF   80 (284)
Q Consensus         1 aylGp~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~   80 (284)
                      |||||+|||||+||+++|   +++||+||++||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.+||+|
T Consensus        10 aylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h   86 (283)
T 2qmx_A           10 AYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFVKVEH   86 (283)
T ss_dssp             EEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEEeeee
Confidence            699999999999999999   89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCCcCCccEEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccc
Q 023305           81 CLLALPGIKADQLKRVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRI  159 (284)
Q Consensus        81 ~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I  159 (284)
                      ||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++|+++++++.|||||+.||++|||+||+++|
T Consensus        87 ~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il~~~I  166 (283)
T 2qmx_A           87 CLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENL  166 (283)
T ss_dssp             EEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEEESSC
T ss_pred             eEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCceecccC
Confidence            999999999999999999999999999999997 8999999999999999999877889999999999999999999999


Q ss_pred             cCCCCCeeEEEEEeeCCCC--------CCCCCCceEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCcccc
Q 023305          160 QDEPDNITRFLVLARDPII--------PRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVD  231 (284)
Q Consensus       160 ~d~~~N~TRF~vl~~~~~~--------~~~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~  231 (284)
                      ||.++|+|||+||++++..        + ..+.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+     
T Consensus       167 ~D~~~N~TRF~vl~~~~~~~~~~~~~~~-~~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-----  240 (283)
T 2qmx_A          167 ADEEWNITRFFCIAHENNPDISHLKVRP-DVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA-----  240 (283)
T ss_dssp             SSCCCCEEEEEEEEETTCCCCTTSSSCC-EEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST-----
T ss_pred             cCCCCCeeeEEEEecCccccccccccCC-CCCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC-----
Confidence            9999999999999998644        2 2235799999999999999999999999999999999999999874     


Q ss_pred             CCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHhcCCceEEEceeeCC
Q 023305          232 DSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD  281 (284)
Q Consensus       232 ~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGsYp~~  281 (284)
                               |+|.||||++||.+|++++++|++|++.+.++|+|||||+.
T Consensus       241 ---------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~  281 (283)
T 2qmx_A          241 ---------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV  281 (283)
T ss_dssp             ---------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred             ---------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence                     99999999999999999999999999999999999999974

PyMOL of 2qmx

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}	Back alignment and structure

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3	Back alignment and structure

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}	Back alignment and structure

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A	Back alignment and structure

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A	Back alignment and structure

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7	Back alignment and structure

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6	Back alignment and structure

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6	Back alignment and structure

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6	Back alignment and structure

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12	Back alignment and structure

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11	Back alignment and structure

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}	Back alignment and structure

>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A	Back alignment and structure

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5	Back alignment and structure

>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0	Back alignment and structure

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11	Back alignment and structure

>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}	Back alignment and structure

>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A	Back alignment and structure

>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0	Back alignment and structure

>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0	Back alignment and structure

>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1	Back alignment and structure

>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0	Back alignment and structure

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}	Back alignment and structure

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}	Back alignment and structure

>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*	Back alignment and structure

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}	Back alignment and structure

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}	Back alignment and structure

>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*	Back alignment and structure

>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0	Back alignment and structure

>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0	Back alignment and structure

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}	Back alignment and structure

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5	Back alignment and structure

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}	Back alignment and structure

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}	Back alignment and structure

>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}	Back alignment and structure

>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}	Back alignment and structure

>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}	Back alignment and structure

>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}	Back alignment and structure

>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A	Back alignment and structure

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*	Back alignment and structure

>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*	Back alignment and structure

>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}	Back alignment and structure

>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A	Back alignment and structure

>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}	Back alignment and structure

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}	Back alignment and structure

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*	Back alignment and structure

>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		284
d2qmwa1		184	c.94.1.1 (A:1-184) Prephenate dehydratase {Staphyl	1e-43
d2qmwa2		80	d.58.18.3 (A:185-264) Prephenate dehydratase C-ter	6e-22
d1phza1		97	d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-t	8e-20

>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 184	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Prephenate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  144 bits (365), Expect = 1e-43
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 3   QGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNY 60
            G  G+FS  A  + + + E    P     +  KAV        V+PIENS  G+I+   
Sbjct: 6   LGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVA 65

Query: 61  DLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENV 120
           D L +  +   GE++L  NF L          +K+V S   A++ +   + Q     + V
Sbjct: 66  DALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYV 125

Query: 121 DDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPR 180
           D T  +   +         A+A   + E YG   +   I+D P N+TRFLV+       +
Sbjct: 126 DSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQFDQ 181

PyMOL of d2qmwa1

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 80	Back information, alignment and structure

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		284
d2qmwa1		184	Prephenate dehydratase {Staphylococcus aureus [Tax	100.0
d2qmwa2		80	Prephenate dehydratase C-terminal domain {Staphylo	99.93
d1phza1		97	Phenylalanine hydroxylase N-terminal domain {Rat (	99.91
d2f1fa1		76	Acetolactate synthase small subunit, IlvH {Escheri	97.76
d2pc6a2		77	Acetolactate synthase small subunit, IlvH {Nitroso	97.65
d2fgca2		78	Acetolactate synthase small subunit, IlvH {Thermot	97.64
d1y7pa2		77	Hypothetical protein AF1403, N-terminal domain {Ar	97.48
d1zpva1		83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	97.2
d1sc6a3		84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.2
d2f06a2		70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.07
d2f06a1		71	Hypothetical protein BT0572 {Bacteroides thetaiota	96.95
d1ygya3		78	Phosphoglycerate dehydrogenase, regulatory (C-term	96.86
d1u8sa1		86	putative transcriptional repressor VC2159 {Vibrio	96.48
d1u8sa2		93	putative transcriptional repressor VC2159 {Vibrio	95.51
d1xt8a1		248	Putative amino-acid transporter CjaA {Campylobacte	93.46
d1wdna_		223	Glutamine-binding protein {Escherichia coli [TaxId	93.14
d1tdja2		88	Allosteric threonine deaminase C-terminal domain {	89.86
d1ii5a_		226	Glutamate receptor ligand binding core {Synechocys	88.41
d2cdqa2		91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.25

>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Prephenate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=7.1e-61  Score=412.74  Aligned_cols=174  Identities=27%  Similarity=0.361  Sum_probs=165.5

Q ss_pred             CccCCCCcHHHHHHHhhCCC--CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEee
Q 023305            1 MMQGLPGSFSEDAALKAYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAA   78 (284)
Q Consensus         1 aylGp~GtfS~~Aa~~~f~~--~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I   78 (284)
                      |||||+|||||+||+++|++  .+++||.||++||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.+||
T Consensus         4 ~yLGp~GtfS~~Aa~~~f~~~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~D~L~~~~~~I~~E~~l~I   83 (184)
T d2qmwa1           4 YYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIRLDI   83 (184)
T ss_dssp             EEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEEEEC
T ss_pred             EEeCCCChHHHHHHHHhcccCCceeeecCCHHHHHHHHHcCCCceeEEEeecccccchHHHHHhhhccCceeEeeecccc
Confidence            69999999999999999985  5789999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEeeecCCCCcCCccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeecc
Q 023305           79 NFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADR  158 (284)
Q Consensus        79 ~~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~  158 (284)
                      +|||+++++.++++|++|||||||++||++||+++.++...+.||++||+.+.    ++.|||||+.||++|||+||+++
T Consensus        84 ~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~~l~~~~~~~~~~~sta~aa~~~~----~~~aAIas~~aa~~ygL~il~~~  159 (184)
T d2qmwa1          84 NFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTH  159 (184)
T ss_dssp             CEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCB----TTEEEEEETTTSGGGTCCEEEEC
T ss_pred             hhhhcccccccccccceEEEecchHHHHHHHHHhhccchhhhhhHHHHHhhhh----hhhhccccHhHHHHcCChhhhhC
Confidence            99999999999999999999999999999999999888889999999998753    45899999999999999999999


Q ss_pred             ccCCCCCeeEEEEEeeCCCC
Q 023305          159 IQDEPDNITRFLVLARDPII  178 (284)
Q Consensus       159 I~d~~~N~TRF~vl~~~~~~  178 (284)
                      |||.++|+|||+||+|++..
T Consensus       160 I~D~~~N~TRF~vi~~~~~~  179 (184)
T d2qmwa1         160 IEDYPHNVTRFLVIKNQQQF  179 (184)
T ss_dssp             CCSCSCCEEEEEEEESCCCC
T ss_pred             CCCCCCCeEeEEEEecCCcC
Confidence            99999999999999998654

PyMOL of d2qmwa1

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}	Back information, alignment and structure

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure