Citrus Sinensis ID: 023321

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHEHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccHHcccccccc
Coil and Loop (DISEMBL)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNtyrskgpvlTFSLLCKFFMLGVLGICLVQIFAITgikyssptlasamgnlIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSlykgppllgfsspsnsniqlpvseysnwALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLgetphlgsliGTVVIAFGFYAVIWAQgkesnmttgnvgsleslnqkipplknt
Flexible Loop (DISEMBL)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNmttgnvgsleslnqkipplknt
Low Complexity Region (SEG)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Disordered region (IsUnstruct)
***VEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS**NSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG**************************
Disordered Region (DISOPRED)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA****************************
Disordered Region (DISEMBL)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Disordered Region (DISPRO)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFS**************SNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.978	0.757	0.397	9e-47
Q9FL08	368	WAT1-related protein At5g	no	no	0.929	0.717	0.368	2e-43
Q945L4	339	WAT1-related protein At5g	no	no	0.936	0.784	0.355	2e-42
Q56X95	355	WAT1-related protein At3g	no	no	0.975	0.780	0.337	9e-39
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.957	0.699	0.304	4e-37
Q9LRS5	353	WAT1-related protein At3g	no	no	0.919	0.739	0.351	4e-37
F4I5D5	375	WAT1-related protein At1g	no	no	0.996	0.754	0.302	9e-37
F4JK59	347	WAT1-related protein At4g	no	no	0.897	0.734	0.382	1e-36
F4KHA8	370	WAT1-related protein At5g	no	no	0.919	0.705	0.340	7e-35
F4IYZ0	358	WAT1-related protein At3g	no	no	0.894	0.709	0.342	8e-35

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  187 bits (474), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 139/350 (39%), Positives = 179/350 (51%), Gaps = 72/350 (20%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLHYFIYNTYRSKG-PVLTF 58
           + ++E   VG+ TL KAA   GMS  V++VY Y      +L   F   ++RS+  P + F
Sbjct: 16  LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFC--SFRSRTLPPMNF 73

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
           S+L K  +LG++G C   I   TGI YSSPTLASA+ NL P  TFLLAV FRME V+ + 
Sbjct: 74  SILYKIVLLGIIG-CCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFKR 132

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLL---- 174
            SS AK+LGTVVSI GAFIV+LY GP ++  S PS S      S   NW LG   L    
Sbjct: 133 TSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS--LRSQSTNPNWILGAGFLAVEY 190

Query: 175 ---------------------TVTCFSS-------------------ATWKIFQAIV--- 191
                                TV CF S                     WKI   I    
Sbjct: 191 FCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAWKIKPNIALVS 250

Query: 192 -------GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTV 244
                  G+ I ++I  W L+ KGP+FVA+FKPL  AIAV M V+FL ++ ++GSLIG  
Sbjct: 251 IVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYIGSLIGAT 310

Query: 245 VIAFGFYAVIWAQGKE---------SNMTTGNVGSLESL--NQKIPPLKN 283
           VI  GFY V+W + KE         +N    N   L+S   +QK P L++
Sbjct: 311 VITIGFYTVMWGKAKEVALVEDDNKANHEEANEADLDSPSGSQKAPLLES 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 165/323 (51%), Gaps = 59/323 (18%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  VE   VG  TL KAA   G+S +V+V Y   + T +LL   +      + P     L
Sbjct: 24  MFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRRLPAAKSPL 83

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             K F+LG++G  + QI    GI YSSPTLASA+ NL P  TF LAV FRME+V +RS +
Sbjct: 84  FFKIFLLGLVGF-MSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLRSSA 142

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-----PSNSNIQLPVSEYSNWALGGLLLT 175
           +QAKI+G ++SI+GA +V LYKGP +L  +S     P+ +  Q   S  S+W +GGLLL 
Sbjct: 143 TQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLLLA 202

Query: 176 VTCFSSATWKIFQAIVGTVI-------------------------RSSIIAWCLQK---- 206
              F  + W I Q  V  V                           S++ +W L+     
Sbjct: 203 SQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWVLKPDISL 262

Query: 207 ------------------------KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIG 242
                                   KGPV+++LF+PL  AIAV M  +FLG+  HLGS+IG
Sbjct: 263 AAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLGDALHLGSVIG 322

Query: 243 TVVIAFGFYAVIWAQGKESNMTT 265
           ++++  GFY VIW + +E  + T
Sbjct: 323 SMILCIGFYTVIWGKAREDTIKT 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 176/338 (52%), Gaps = 72/338 (21%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
           M + E   VG+ TL KAA S G+S FV +VY    G+ +LL    + ++RS+  P LTFS
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLP-LTFFSFRSRSLPPLTFS 75

Query: 60  LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
           +LC   +LG++     QI    GIKYSSPTL+SAM N+ P  TF+LAV FRME +++  +
Sbjct: 76  ILCNMGILGLIASAF-QILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKK 134

Query: 120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLL----- 174
           SS AK+LGT++SI GA +V+LY GP L+              S +S+W +GG LL     
Sbjct: 135 SSVAKVLGTILSIIGALVVTLYHGPMLM--------------SSHSDWIIGGGLLALQYI 180

Query: 175 -----------TVTCFSSA----------------------------TWKI-FQAIVGTV 194
                      T+  + SA                             W I F   + TV
Sbjct: 181 LVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITV 240

Query: 195 IRSSII--------AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 246
           + + I+         W +  KGPV++++FKPL   IA     +FLGE+ +LGS++G ++I
Sbjct: 241 VATGILNSGYYVIHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVMGGILI 300

Query: 247 AFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT 284
           + GFY V+W + KE  +    +G++ES      PL + 
Sbjct: 301 SIGFYMVLWGKAKEDKVDI--IGAIESSPSHNAPLLDN 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  160 bits (405), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 175/341 (51%), Gaps = 64/341 (18%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M   E G V M TL KAA S G++++ +++Y   +G+ +LL   I++      P L+ S+
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRSLPSLSLSI 76

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LCK  +LG+LG   + I    GI+YS+PTLASA+ N+ P ITF+LA+ FRMEK + + +S
Sbjct: 77  LCKIGVLGLLGSTYL-ITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ----LPVSEYSNWALGGLLL-- 174
           S AK++GT+VS+ GA +V LY GP +   SSP    ++       S  S+W +GG LL  
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWIIGGCLLAI 195

Query: 175 -----------------------TVTCFSSATWKIFQAIVGTVIRS-------------- 197
                                  TV+ F      I  +++G V                 
Sbjct: 196 KDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWIIHFDITL 255

Query: 198 --------------SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT 243
                         +I  W ++ KGPV++A+F+PL   IAV M  +FLG++ +LGSL+G 
Sbjct: 256 VCIVVGGIFNPGYYAIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSFYLGSLVGG 315

Query: 244 VVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT 284
           ++I+ GFY V+W + KE            SL+++ P L   
Sbjct: 316 ILISLGFYTVMWGKAKEGKT------QFLSLSEETPLLDEN 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 162/335 (48%), Gaps = 63/335 (18%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  ++ G  G   + +AA++ G+S  V+ VY N +   +LL  F Y   + + P +T + 
Sbjct: 24  MLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLP-FAYFLEKKERPAITLNF 82

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L +FF L ++GI   Q F + G+  +SPT AS+M N +P ITFL+A   R+EKV I  R 
Sbjct: 83  LIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINRRD 142

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP-------SNSNIQLPVSEYS--NWALGG 171
             +KILGT + +AGA +++LYKGP +   +S        +NS +  P+   +  NW LG 
Sbjct: 143 GISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTLGC 202

Query: 172 LLLTVTCFSSATWKIFQA------------------------------------------ 189
           + L   C S + W +FQA                                          
Sbjct: 203 IYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVFHS 262

Query: 190 -----------IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLG 238
                      IV + I  ++  WC+ + GPVFVA+++P+ T +   MA + LGE  +LG
Sbjct: 263 GWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLG 322

Query: 239 SLIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLES 273
            +IG V+I  G Y V++ + +E         +++S
Sbjct: 323 GIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQS 357

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 163/319 (51%), Gaps = 58/319 (18%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M   E G VG+ TL K A S G++ + ++ Y   L + +LL    +       P L+ S+
Sbjct: 18  MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSI 77

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L K  +LG+LG   V I    GI+YSSPTLASA+ N+ P +TF+LA+ FRMEKV+ + RS
Sbjct: 78  LSKIGLLGLLGSMYV-ITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ----LPVSEYSNWALGGLLLTV 176
           S AK++GT++S+ GA +V LY GP +   SSP   N +       S  S+W +GG LLT+
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 177 TCFSSATWKIFQA----------------IVGTVIRSSII-------------------- 200
                +   I QA                IV   I +S+I                    
Sbjct: 197 RDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITL 256

Query: 201 -----------------AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT 243
                            +W ++ KGP+++A+FKPL   IAV M+ +FL ++ +LG LIG 
Sbjct: 257 ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSLYLGCLIGG 316

Query: 244 VVIAFGFYAVIWAQGKESN 262
           ++I  GFYAV+W +  E  
Sbjct: 317 LLITLGFYAVMWGKANEEK 335

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  154 bits (388), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 167/354 (47%), Gaps = 71/354 (20%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILL--HYFIYNTYRSKGPVLTF 58
           MA++E   + +  + K A++ GMS FV+VVY NA G+ +LL   +  +   R++  + ++
Sbjct: 16  MAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQSIFSW 75

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
            LL + F LG  GI + Q  A  G+++SSP +  AMG  IP  +FLL++     K+  R+
Sbjct: 76  PLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSKLDWRN 135

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEY-------SNWALGG 171
            S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +         NW LG 
Sbjct: 136 TSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDNWFLGC 195

Query: 172 LLLTVTCFSSATWKIFQ-----------------AIVGT--------------------- 193
           + L V  FS + + + Q                 +IVGT                     
Sbjct: 196 IFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLSAWKIQP 255

Query: 194 ---------------VIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLG 238
                          VIR+S+   C Q KGP +V LFKP G   A      F   + H G
Sbjct: 256 NFDLYLIIATGTFGSVIRTSVHVKCTQMKGPYYVPLFKPFGIFWATLFGTSFFVNSLHYG 315

Query: 239 SLIGTVVIAFGFYAVIWAQGKE------SNMTTGNVGSLESLNQ---KIPPLKN 283
           S++G  +   G++ V W Q KE      SN    ++ ++   ++   K+P L N
Sbjct: 316 SVLGAAIAGVGYFTVSWGQLKESEEKQSSNEERKSIKTIHHRDEDEYKVPLLIN 369

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/319 (38%), Positives = 170/319 (53%), Gaps = 64/319 (20%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLHYFIYNTYRSKGPVLTFS 59
           M  +E   VG   L KAA   G S +V+V Y Y      +LL   I+   RS  P    S
Sbjct: 21  MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRSL-PTAKSS 79

Query: 60  LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
           L  K F+L +LG+   ++    GI+YSSPTL+SA+ NL P  TF+LA+FFRME+V +RS 
Sbjct: 80  LFFKIFLLALLGLT-SRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSS 138

Query: 120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
           ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +GGLLL +   
Sbjct: 139 ATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIGGLLLGLQFL 190

Query: 180 SSATWKIFQA----------------------IVGTV---IRSSIIAWCLQK-------- 206
             + W I Q                       I GTV   +   + +W L+         
Sbjct: 191 LLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGFSLASVI 250

Query: 207 --------------------KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 246
                               KGPV+++LFKPL  AIAV MA +FLG+T HLGS+IG+V++
Sbjct: 251 YSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSVIGSVIL 310

Query: 247 AFGFYAVIWAQGKESNMTT 265
           +FGFY VIW + +E +  T
Sbjct: 311 SFGFYTVIWGKAREDSTKT 329

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  147 bits (372), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 158/326 (48%), Gaps = 65/326 (19%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  VE   VG  TL KAA   G+S +V+V Y   + T +LL   +      + P     +
Sbjct: 25  MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRLPSAKTPV 84

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
               F+L ++G  +  I    GI+YSSPTLASA+ NL P  TF LAV FRME++ +RS +
Sbjct: 85  FFNIFLLALVGF-MSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSA 143

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFS-----SPSNSNIQLPVSEYSNWALGGLLLT 175
           +QAKI+GT+VSI+GA +V LYKGP +L  +     SP+ S  Q   S  S+W +GGLLL 
Sbjct: 144 TQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLA 203

Query: 176 VTCFSSATWKIFQAIV-----------------GTVIRSSIIAWCLQKKGPVFVALFKP- 217
                 + W I Q  V                  T+I + +   CL  +  +   + KP 
Sbjct: 204 TQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPV---CLFAEKDLNSFILKPG 260

Query: 218 --------------------------------------LGTAIAVFMAVMFLGETPHLGS 239
                                                 L   IAV M VMFLG+  +LGS
Sbjct: 261 VSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDALYLGS 320

Query: 240 LIGTVVIAFGFYAVIWAQGKESNMTT 265
           +IG+++++ GFY VIW + +E ++ T
Sbjct: 321 VIGSLILSLGFYTVIWGKAREDSIKT 346

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score =  147 bits (371), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 163/318 (51%), Gaps = 64/318 (20%)

Query: 5   EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKF 64
           E   VG+ TL K A S G++ + ++ Y   L + +LL    +       P L+ S+L K 
Sbjct: 22  ETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASILSKI 81

Query: 65  FMLGVLGICLVQIFAITG---IKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSS 121
            +LG LG     ++ ITG   I+YS+PTLASA+GN++P +TF+LAV FRMEKV+ + RSS
Sbjct: 82  GLLGFLG----SMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSS 137

Query: 122 QAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQ----LPVSEYSNWALGGLLLTVT 177
            AK++GT++S+ GAF+V  Y GP +   SSP   N +       S  S+W +GG +LT+ 
Sbjct: 138 VAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQ 197

Query: 178 ------------------------------CFSSAT--------------WKI-FQAIVG 192
                                         C S  T              W I F   + 
Sbjct: 198 GIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITLF 257

Query: 193 TVIRSSII--------AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTV 244
           T++ + II        +W ++ K P+++A+FKPL   IAV M  +FL ++ +LG LIG +
Sbjct: 258 TIVTTGIITSVYYVIHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSLYLGCLIGGI 317

Query: 245 VIAFGFYAVIWAQGKESN 262
           +I  GFY V+W +  E  
Sbjct: 318 LITLGFYVVMWGKANEEK 335

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
224135771	355	predicted protein [Populus trichocarpa]	0.989	0.791	0.452	1e-68
357477327	353	Auxin-induced protein 5NG4 [Medicago tru	0.978	0.787	0.450	4e-64
225457103	362	PREDICTED: auxin-induced protein 5NG4-li	0.989	0.776	0.423	2e-60
255552656	358	conserved hypothetical protein [Ricinus	0.915	0.726	0.459	2e-59
224099697	355	predicted protein [Populus trichocarpa]	0.978	0.783	0.409	2e-59
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.978	0.796	0.393	1e-58
296086518	356	unnamed protein product [Vitis vinifera]	0.982	0.783	0.434	4e-58
359473431	348	PREDICTED: auxin-induced protein 5NG4-li	0.968	0.790	0.403	2e-57
359473421	347	PREDICTED: auxin-induced protein 5NG4 [V	0.982	0.804	0.419	5e-57
224057230	355	predicted protein [Populus trichocarpa]	0.985	0.788	0.408	3e-55

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/338 (45%), Positives = 205/338 (60%), Gaps = 57/338 (16%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M +VE  +VG+ TL KAAMS GMS FV+VVY NAL T ILL   I+  YR+K P +T+SL
Sbjct: 16  MVMVECLDVGLTTLSKAAMSKGMSQFVFVVYSNALATLILLPSLIF--YRTKRPPVTYSL 73

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LCKFF+L ++GI L+Q    TG+ YSSPTLASAMG LIP  TFLLAV FRMEK+  RS  
Sbjct: 74  LCKFFLLSLVGITLMQNCVFTGVSYSSPTLASAMGQLIPAFTFLLAVIFRMEKLDWRSSR 133

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-IQLPVSEYSNWALGGLLLTVT-- 177
           S+ KI+GT+VS++GA  ++LYKGP +   ++ SN + I   +S  ++W +GGL L     
Sbjct: 134 SRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWIIGGLFLVTADL 193

Query: 178 CFSSAT-----------------------------------------WK----------I 186
           C S  T                                         WK          I
Sbjct: 194 CVSIFTTLQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPNAWKLRPDIELISII 253

Query: 187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 246
           + A+VG+V+   + AWC++KKGPVFVA+FKP+G A A F+ V+FLG+T H+GS++G ++I
Sbjct: 254 YSAVVGSVVTFGVTAWCIRKKGPVFVAIFKPVGIATAAFLGVIFLGDTLHVGSIVGAIII 313

Query: 247 AFGFYAVIWAQGKESNMTTGNV-GSLESLNQKIPPLKN 283
             GFY VIWAQ KE   +  N   +L+SL+QK P L++
Sbjct: 314 VAGFYGVIWAQSKEDEHSKVNRPRNLQSLSQKTPLLES 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477327|ref|XP_003608949.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355510004|gb|AES91146.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/344 (45%), Positives = 198/344 (57%), Gaps = 66/344 (19%)

Query: 1   MALVEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILL-HYFIYNTYRSKGPVLTF 58
           M +VE  +VG+ TL K AMS+ GM++F++V+Y NAL TFILL  YF+ N  R+  P L+F
Sbjct: 16  MVIVECLDVGLTTLSKEAMSTKGMNHFIFVLYSNALATFILLPSYFLIN--RTTRPPLSF 73

Query: 59  SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
           SLL KFF LG++GI ++Q    TGI YSSPTL SAM NL P ITF+LAV FRMEK+   S
Sbjct: 74  SLLAKFFFLGLVGITIMQNCVFTGISYSSPTLGSAMSNLTPAITFVLAVIFRMEKLDAGS 133

Query: 119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGF-SSPSNSNIQLP----VSEYSNWALGGLL 173
             SQ KI+GTVVSI+GA IV+ YKG P+    + PS S    P    ++E SNW +GGL 
Sbjct: 134 SISQIKIVGTVVSISGALIVTFYKGAPISSIQTQPSTSQ---PFWSLLAETSNWVIGGLF 190

Query: 174 LTVTCFSSATWKIFQ--------------------------------------------- 188
           L     S A W I Q                                             
Sbjct: 191 LATASLSLAIWNIAQAEILRGYPSQLTIVAFYCLFGTIQCALLSLIVVKDPNAWNLSLDI 250

Query: 189 --------AIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSL 240
                   AI G+ +  S++ WC+ +KGPVFV +FKP+G AIA FM+V FLGET H+GS+
Sbjct: 251 ELIAIIYSAIFGSAVTFSVLTWCIDRKGPVFVTMFKPVGIAIAAFMSVAFLGETLHVGSV 310

Query: 241 IGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKNT 284
           IG +VIA GFY V+WAQ KE N+    V  L S +   P L++T
Sbjct: 311 IGALVIAIGFYTVMWAQSKEKNVKGLEVDRLPS-SSSAPLLEST 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457103|ref|XP_002283377.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 187/340 (55%), Gaps = 59/340 (17%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYNTYRSKGPVLTFS 59
           M  VE  +VG+ TL KAAMS GM  FV+VVY NA  + IL    FI+   R+K P L+FS
Sbjct: 16  MVTVECLDVGLTTLSKAAMSRGMDRFVFVVYSNAFASLILFSISFIF--LRTKRPPLSFS 73

Query: 60  LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
           LLCKFF+L + GI ++Q    TG+ Y SPTL SAM NLIP  TFLLAV FR+E + +RS 
Sbjct: 74  LLCKFFLLSLAGITVMQNCVFTGVSYGSPTLGSAMSNLIPAFTFLLAVAFRLENLDLRSS 133

Query: 120 SSQAKILGTVVSIAGAFIVSLYKGPPLLG--FSSPSNSNIQLPVSEYSNWALGGLLLTVT 177
            S  KILGT+VSI+GA IV+LYKGPP+      SPS S+        +NW +GGL   + 
Sbjct: 134 RSLIKILGTLVSISGALIVTLYKGPPIGAGLIKSPSISSNDHLQKTANNWVIGGLFFAMA 193

Query: 178 CFSSATWKIFQ------------------------------------------------- 188
             S + W IFQ                                                 
Sbjct: 194 GLSISVWNIFQAPILRRYPSEITIVSFFTLFGAIQCAAVALIAVKDSNAWKLRPDFELIT 253

Query: 189 ----AIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTV 244
               A+ G V+   +  WC+++KGPVFVA+FKPLG  IA  M V+FLG+T ++GS+IG +
Sbjct: 254 IIYSAVFGGVVSFCVQTWCIKRKGPVFVAIFKPLGIGIAAIMGVIFLGDTLYIGSVIGAI 313

Query: 245 VIAFGFYAVIWAQGKESNM-TTGNVGSLESLNQKIPPLKN 283
           +I  GFY V+WAQ KE        V  L S ++K P L++
Sbjct: 314 IIVTGFYGVMWAQTKEGEKGEAQEVDGLPSTSEKAPLLQS 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552656|ref|XP_002517371.1| conserved hypothetical protein [Ricinus communis] gi|223543382|gb|EEF44913.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/318 (45%), Positives = 190/318 (59%), Gaps = 58/318 (18%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M  VE  +VG+ T+ KAA++ GMS +V VVYYNAL T ILL YFI++  R + PV T SL
Sbjct: 16  MIAVECTDVGVSTISKAALAKGMSKYVSVVYYNALATLILLPYFIFHR-RKQAPV-THSL 73

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L +FF+LG++G    QI  +  +K SSPTL+SA+ NLIP  TFLLAV  RME + IR  S
Sbjct: 74  LFRFFLLGLIG-STGQILFLAAVKLSSPTLSSALANLIPIFTFLLAVITRMETLDIRRSS 132

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--SNIQLPVSEYSNWALGGLLLTVTC 178
           SQAK LG +VS+AGAF+V+LYKGP +L  +  SN   + QL  S+   W  GG LL + C
Sbjct: 133 SQAKSLGAIVSVAGAFVVTLYKGPAVLMTTQTSNFHHHHQLLFSQKPEWIFGGFLLLIVC 192

Query: 179 FSSATWK----------------------------------------------------- 185
             SATW                                                      
Sbjct: 193 LLSATWNVAQGATVKEYQEPMTIVFFFTFFITIQSAVFSLILERNPNAWILKSSIEIIAI 252

Query: 186 IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVV 245
           +F A+ G++ R +I  WCL+KKGPV+VA+FKPLG AIAVFM V+FLG+T +LGS+IG+++
Sbjct: 253 VFTAVFGSIFRIAIHTWCLRKKGPVYVAMFKPLGIAIAVFMTVVFLGDTLYLGSVIGSII 312

Query: 246 IAFGFYAVIWAQGKESNM 263
           IA GFY+V+W Q KE  M
Sbjct: 313 IALGFYSVMWGQMKEKKM 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/344 (40%), Positives = 196/344 (56%), Gaps = 66/344 (19%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILL--HYFIYNTYRSKGPVLTF 58
           M + E  +VG++ L KAAMS GM+NF++V+Y NAL + ILL   +F++   RS+ P LTF
Sbjct: 12  MVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLH---RSERPPLTF 68

Query: 59  SLLCKFFMLGVLGICLVQ----IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKV 114
            +LC FF+LG+ G  ++     IF   GI  SS TL +AM NLIPG+TF+LAV FRMEK+
Sbjct: 69  PILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAVAFRMEKL 128

Query: 115 AIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP-VSEYSNWALGGLL 173
             +S S+  K  GT+VS+AGAFIV  YKGPPLL   +PS SN+    +S+  NW +GGLL
Sbjct: 129 DWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLL--MAPSTSNLPHELLSQQQNWIIGGLL 186

Query: 174 LTVTCFSSATWKIFQAIV------------------------------------------ 191
           L V C  ++ W I QA++                                          
Sbjct: 187 LAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWSLKPTV 246

Query: 192 -----------GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSL 240
                      G+  +  +  WCL K GPVFVA+FKPLG  IA  ++++ L +T +LGSL
Sbjct: 247 RWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFKPLGIVIAAAVSIICLRDTLYLGSL 306

Query: 241 IGTVVIAFGFYAVIWAQGKESNMTTGN-VGSLESLNQKIPPLKN 283
           +G  VI  GFY+V+W + KE  +   + V S ES +QK+P L++
Sbjct: 307 VGATVIVIGFYSVMWGKAKEEKVGVDDGVRSFESSSQKVPLLQS 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/338 (39%), Positives = 198/338 (58%), Gaps = 60/338 (17%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M + E  +VG++ + K AMS GMS+F++V Y NAL + ILL + + +  R++ P LTFS+
Sbjct: 12  MVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHR-RTERPPLTFSI 70

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           +C FF+LG+ G CL Q F   GI  SSPTL +AM NL+PG+TF+LAV FRMEK+  R+ S
Sbjct: 71  VCGFFLLGLFG-CLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEKLDGRTSS 129

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS-NSNIQLPVSEYSNWALGGLLLTVTCF 179
           S AK +GT++S+ GAFI++ YKGP +L   +PS NS+ QL +++ SNW +GGLLL   C 
Sbjct: 130 SLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQL-LTQPSNWIIGGLLLAADCV 186

Query: 180 SSATWKIFQAIV------------------------------------------------ 191
            ++ W I QA++                                                
Sbjct: 187 MTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPNIRLVSVL 246

Query: 192 -----GTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 246
                G+ ++  I  WCL++ GPVFV++FKPLG  IA  + V+ LG+T +LGS+IGTV+ 
Sbjct: 247 YSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICLGDTLYLGSIIGTVIC 306

Query: 247 AFGFYAVIWAQGKES-NMTTGNVGSLESLNQKIPPLKN 283
             G+Y V+W Q +E       +V   ++ ++K+P L++
Sbjct: 307 GMGYYTVMWGQAREDGKQKPHDVERADTSDEKVPLLQD 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086518|emb|CBI32107.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/338 (43%), Positives = 192/338 (56%), Gaps = 59/338 (17%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M + E  +VG++   KAA+SSGM N V+++Y N L + ILL   +   +RS  P LTFSL
Sbjct: 12  MVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLL-FHRSPRPQLTFSL 70

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L  FF+L +L     QIF   GI+YSS TL +AM NL+PG TF+LA+ FRME++  R  S
Sbjct: 71  LSGFFLLALL-GFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRMERLDWRG-S 128

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFS 180
           S AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  GGLLL   C  
Sbjct: 129 SMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGGLLLAADCVM 188

Query: 181 SATWKIFQA--------------------------------------------------- 189
           S+ W I QA                                                   
Sbjct: 189 SSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTRFIAVMY 248

Query: 190 --IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIA 247
             + G V +   I WC+ +KGPVFVA+FKP+G  +AV M V+FLG+T ++GSLIG  VI 
Sbjct: 249 SGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYMGSLIGATVIV 308

Query: 248 FGFYAVIWAQGKESNMTTGNVG--SLESLNQKIPPLKN 283
            GFY+V+W + KE  +   ++G  SLES +QK P L+N
Sbjct: 309 IGFYSVMWGKAKEEKIDE-DIGMRSLESTSQKAPLLQN 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473431|ref|XP_002265468.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 191/342 (55%), Gaps = 67/342 (19%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M ++E  EVG+ TL KAAM  GMS+FV+VVY NAL   ILL   +    R   P LT S+
Sbjct: 10  MLIIECLEVGLSTLSKAAMRRGMSDFVFVVYSNALSVPILLFCCLLFHRRRFPPPLTLSI 69

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           LC+ F+LG +  C  Q+F   GI+YSSPTLASAM +L+P  TF+LA+  RMEK+ +++ S
Sbjct: 70  LCRIFILGFIS-CSTQMFLFVGIRYSSPTLASAMTDLVPAFTFILAIISRMEKLDLKAGS 128

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS----NSNIQLPVSEYSNWALGGLLLTV 176
            +AK +GT+VSI GA IV++YKGP  + F+S +    + N++   S+ SNW +GG LL +
Sbjct: 129 CRAKCIGTIVSIIGALIVTIYKGPQ-IAFASSTFKILDENLR---SQISNWVIGGFLLAI 184

Query: 177 TCFSSA-------------------------------------------TWKI------- 186
           +  S A                                            W++       
Sbjct: 185 SAVSIALFYVVQTSIIRDYPAELMLTFICHIFVTMQSSIVSLIAERDPSAWRLKPDVELI 244

Query: 187 ---FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT 243
              + A++    R +  AW L KKGPVFVA+FKP+   IAV M V FLG+  HLGS+IG 
Sbjct: 245 AVGYSAVLVLAFRGTAHAWVLHKKGPVFVAMFKPVAIVIAVVMGVTFLGDVLHLGSVIGA 304

Query: 244 VVIAFGFYAVIWAQGKE--SNMTTGNVGSLESLNQKIPPLKN 283
            +IAFGFY V+W + KE   +MTT  +   +S + K P L+N
Sbjct: 305 AIIAFGFYTVMWGKAKEEIEDMTTSGI---DSSSHKDPLLQN 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473421|ref|XP_002266928.2| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 141/336 (41%), Positives = 189/336 (56%), Gaps = 57/336 (16%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M + E  +VG++   KAA+SSGM N V+++Y N L + ILL   +   +RS  P LTFSL
Sbjct: 12  MVMAEFAQVGLMIASKAAISSGMPNLVFILYSNTLASLILLPSCLL-FHRSPRPQLTFSL 70

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L  FF+L +L     QIF   GI+YSS TL +AM NL+PG TF+LA+ FRME++  R  S
Sbjct: 71  LSGFFLLALL-GFFAQIFGYAGIQYSSATLGTAMLNLVPGFTFILAIIFRMERLDWRG-S 128

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFS 180
           S AK +GTVVSIAGAFIV+ YKG P+L   SPSN   QL +S+ SNW  GGLLL   C  
Sbjct: 129 SMAKSMGTVVSIAGAFIVTFYKGSPILMTPSPSNFPDQLFLSQQSNWVFGGLLLAADCVM 188

Query: 181 SATWKIFQA--------------------------------------------------- 189
           S+ W I QA                                                   
Sbjct: 189 SSAWLILQASILKKYPAELIINFYYCFFVAIQSAAASLIMERGPGAWSLKPSTRFIAVMY 248

Query: 190 --IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIA 247
             + G V +   I WC+ +KGPVFVA+FKP+G  +AV M V+FLG+T ++GS+IG  +I 
Sbjct: 249 SGVFGYVFQVGAITWCVHQKGPVFVAMFKPVGIVVAVAMGVIFLGDTFYMGSVIGAYIIG 308

Query: 248 FGFYAVIWAQGKESNMTTGNVGSLESLNQKIPPLKN 283
            G+Y ++W Q +E +M  G  G ++S  QK+P L+ 
Sbjct: 309 IGYYTLMWGQIREDDMKAGGEG-IDSSEQKVPLLQE 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/340 (40%), Positives = 185/340 (54%), Gaps = 60/340 (17%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M + E  + G + LGKAAMS+GMS+FV+V+Y NA+   ILL         S+ P LT S+
Sbjct: 13  MVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSSERPPLTLSI 72

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           +  FF+LG+ G CL Q F   GI  SSPTL +AM NL+PG+TF+LA+ FRME V  +S S
Sbjct: 73  VSGFFLLGLFG-CLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIFRMENVDWKSYS 131

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLL-GFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
           + AK +GT+VSI GAFIV+ YKGP LL    S + S+ Q+ + + SNW LGGLL+ V C 
Sbjct: 132 TLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQ-SNWVLGGLLMAVDCA 190

Query: 180 SSATWKIFQA-------------------------------------------------- 189
           ++++W I QA                                                  
Sbjct: 191 TASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSLNSNIRLIAVL 250

Query: 190 ---IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 246
              I+G      + AWC+ K GPVFVA+F PLG  IA   +V+  G+   LG +IG  VI
Sbjct: 251 FSGILGNAFEIGVTAWCVHKTGPVFVAIFAPLGIVIAAAASVICFGDALDLGIVIGAAVI 310

Query: 247 AFGFYAVIWAQGKES---NMTTGNVGSLESLNQKIPPLKN 283
           A GFYAVIW + +E         N GS  S +QK+P L+N
Sbjct: 311 AIGFYAVIWGKAQEEIKKVEDKENCGSASS-SQKVPFLQN 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.728	0.564	0.438	1.8e-54
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.679	0.556	0.404	4.8e-52
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.563	0.471	0.446	6e-48
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.598	0.474	0.451	2.9e-46
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.669	0.488	0.37	1.8e-44
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.676	0.512	0.369	2e-43
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.630	0.467	0.391	7.5e-42
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.5	0.353	0.420	1.5e-41
TAIR|locus:2202745	374	UMAMIT35 "AT1G60050" [Arabidop	0.654	0.497	0.373	1.5e-39
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.658	0.456	0.344	1.7e-39

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 93/212 (43%), Positives = 121/212 (57%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
             + ++E   VG+ TL KAA   GMS  V++VY   L   +LL   ++ ++RS+  P + FS
Sbjct:    16 LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPS-LFCSFRSRTLPPMNFS 74

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +L K  +LG++G C   I   TGI YSSPTLASA+ NL P  TFLLAV FRME V+ +  
Sbjct:    75 ILYKIVLLGIIGCCS-NIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSFKRT 133

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
             SS AK+LGTVVSI GAFIV+LY GP ++  S PS S ++   S   NW LG   L V  F
Sbjct:   134 SSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS-LRSQ-STNPNWILGAGFLAVEYF 191

Query:   180 SSATWKIFQAIVGTVIRSSIIAWCLQKKGPVF 211
                 W I Q  +     +     C    G  F
Sbjct:   192 CVPLWYIVQTQIMREYPAEFTVVCFYSIGVSF 223

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
 Identities = 83/205 (40%), Positives = 118/205 (57%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYNTYRSKGPVLTFS 59
             M  +E   VG   L KAA   G S +V+V Y     T +LL    I+   RS  P    S
Sbjct:    21 MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRSL-PTAKSS 79

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             L  K F+L +LG+   ++    GI+YSSPTL+SA+ NL P  TF+LA+FFRME+V +RS 
Sbjct:    80 LFFKIFLLALLGLTS-RVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSS 138

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCF 179
             ++QAKI+GT+VSI+GA ++ LYKGP LL  +S ++          S+W +GGLLL +   
Sbjct:   139 ATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSFE--------SSWIIGGLLLGLQFL 190

Query:   180 SSATWKIFQAIVGTVIRSSI-IAWC 203
               + W I Q  +  +    I + +C
Sbjct:   191 LLSVWFILQTHIMEIYPEEIAVVFC 215

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 79/177 (44%), Positives = 110/177 (62%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFS 59
             M + E   VG+ TL KAA S G+S FV +VY    G+ +LL    ++ +RS+  P LTFS
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFS-FRSRSLPPLTFS 75

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +LC   +LG++     QI    GIKYSSPTL+SAM N+ P  TF+LAV FRME +++  +
Sbjct:    76 ILCNMGILGLIASAF-QILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKK 134

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTV 176
             SS AK+LGT++SI GA +V+LY GP L+              S +S+W +GG LL +
Sbjct:   135 SSVAKVLGTILSIIGALVVTLYHGPMLM--------------SSHSDWIIGGGLLAL 177

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 80/177 (45%), Positives = 114/177 (64%)

Query:     5 EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-PVLTFSLLCK 63
             E   VG+ TL K A S G++ + ++ Y   L + +LL    + T RS+  P L+ S+L K
Sbjct:    22 ETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLFF-TNRSRSLPPLSASILSK 80

Query:    64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQA 123
               +LG LG   V    I GI+YS+PTLASA+GN++P +TF+LAV FRMEKV+ + RSS A
Sbjct:    81 IGLLGFLGSMYVITGGI-GIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSSVA 139

Query:   124 KILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QL--PVSEY-SNWALGGLLLTV 176
             K++GT++S+ GAF+V  Y GP +   SSP   N  QL  P+S   S+W +GG +LT+
Sbjct:   140 KVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTI 196

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 74/200 (37%), Positives = 113/200 (56%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
             M  ++ G  G   + +AA++ G+S  V+ VY N +   +LL  F Y   + + P +T + 
Sbjct:    24 MLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLP-FAYFLEKKERPAITLNF 82

Query:    61 LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             L +FF L ++GI   Q F + G+  +SPT AS+M N +P ITFL+A   R+EKV I  R 
Sbjct:    83 LIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINRRD 142

Query:   121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSS-------PSNSNIQLPVSEYS--NWALGG 171
               +KILGT + +AGA +++LYKGP +   +S        +NS +  P+   +  NW LG 
Sbjct:   143 GISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTLGC 202

Query:   172 LLLTVTCFSSATWKIFQAIV 191
             + L   C S + W +FQA V
Sbjct:   203 IYLIGHCLSWSGWLVFQAPV 222

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 75/203 (36%), Positives = 121/203 (59%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYN-TYRSKGPVLTF 58
             MA++E   + +  + K A++ GMS FV+VVY NA G+ +LL + F+++   R++  + ++
Sbjct:    16 MAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQSIFSW 75

Query:    59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRS 118
              LL + F LG  GI + Q  A  G+++SSP +  AMG  IP  +FLL++     K+  R+
Sbjct:    76 PLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSKLDWRN 135

Query:   119 RSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSE----YS---NWALGG 171
              S++AK++GT+VS++GAF+  LYKGP +   SS S +     V +    Y+   NW LG 
Sbjct:   136 TSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDNWFLGC 195

Query:   172 LLLTVTCFSSATWKIFQAIVGTV 194
             + L V  FS + + + Q   GTV
Sbjct:   196 IFLAVAVFSVSLFNVVQT--GTV 216

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 72/184 (39%), Positives = 106/184 (57%)

Query:    10 GMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGV 69
             G   + + A++ G+S  VY VY N L   +L+  F Y   + + P LT SLL +FF L +
Sbjct:    48 GFHIVSRVALNIGVSKVVYPVYRNLLA-LLLIGPFAYFFEKKERPPLTISLLAQFFFLAL 106

Query:    70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTV 129
             +GI   Q F + G+ Y++PT ASAM N +P ITF++A   R+E + +  +   AK+LGT+
Sbjct:   107 IGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTL 166

Query:   130 VSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPV-SEYSN-WALGGLLLTVTCFSSATWKIF 187
             VSI GA +++LY+G P+  F    N   +  V S+ S+   LG L L   C S A W + 
Sbjct:   167 VSIGGATVITLYRGFPI--FDQGLNMQKEEVVGSDNSHSLTLGWLYLMGHCLSWAGWMVL 224

Query:   188 QAIV 191
             QA V
Sbjct:   225 QAPV 228

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 61/145 (42%), Positives = 98/145 (67%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHY-FIYNTYRSKGPVLTFS 59
             M  ++ G  GM  + K ++++GMS++V VVY +A+ T ++  + F +   R   P +TFS
Sbjct:    22 MISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFE--RKAQPKITFS 79

Query:    60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSR 119
             +  + F+LG+LG  + Q F   G+KY+SPT + AM N++P +TF+LAV FRME + ++  
Sbjct:    80 IFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKL 139

Query:   120 SSQAKILGTVVSIAGAFIVSLYKGP 144
               QAKI GTVV++AGA ++++YKGP
Sbjct:   140 WCQAKIAGTVVTVAGAMLMTIYKGP 164

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2202745 UMAMIT35 "AT1G60050" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 75/201 (37%), Positives = 109/201 (54%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKG---PVLT 57
             MAL+E   + +  L K A++ GMS FV++VY NALG+ +LL Y  Y  +R +    P LT
Sbjct:    17 MALMEACTIALTILAKTALTGGMSPFVFIVYTNALGSLLLLPYSFY-FHRDESDDEPFLT 75

Query:    58 FSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEK-VAI 116
                L + F+LG  G+ L Q  A  G+ YSSP +  AMG   P  +FLL++    E  +  
Sbjct:    76 KPSLVRIFLLGFTGVFLFQNMAFLGLSYSSPIVVCAMGLQSPAFSFLLSLALGKEGGLGW 135

Query:   117 RSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--SNIQLPVSEY-------SNW 167
              S+ ++ +++GT++   GAF+  +Y GP  +  S PS+  SN    +S Y        NW
Sbjct:   136 ASKRTKGRVIGTLICFTGAFVEVIYLGP-FIRPSPPSSPTSNFLTTISHYLTFFKNSDNW 194

Query:   168 ALGGLLLTVTCFSSATWKIFQ 188
             ALG LLL     S + W I Q
Sbjct:   195 ALGSLLLACATLSISIWNIIQ 215

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 276 (102.2 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
 Identities = 70/203 (34%), Positives = 104/203 (51%)

Query:     1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
             M  ++ G  G   + +AA++ G+S  V+ VY N L   +L+    Y   + + P LT S 
Sbjct:    23 MLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILA-LMLIGPCAYFLEKKERPALTLSF 81

Query:    61 LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
             L +FF+L + GI          I    PT ASA+ N +P ITF++A   R+EKV I  R 
Sbjct:    82 LIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRRD 141

Query:   121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYS------------NWA 168
               AKI+GTV  ++GA I++LYKGPP+     P   N+++  S +             NW 
Sbjct:   142 GLAKIIGTVACVSGATIITLYKGPPITHIWRP---NLEVTASYFKAFQGNDLSAKSENWT 198

Query:   169 LGGLLLTVTCFSSATWKIFQAIV 191
             LG + L   C + + W + QA V
Sbjct:   199 LGCIYLLGNCLAWSGWIVLQAPV 221

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.1426.1 SubName- Full=Putative uncharacterized protein; (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	9e-49

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  165 bits (418), Expect = 9e-49
 Identities = 112/317 (35%), Positives = 162/317 (51%), Gaps = 58/317 (18%)

Query: 1   MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSL 60
           M   E   VG+ TL K A S G++ + ++ Y   L + +LL    +       P L+ S+
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 61  LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRS 120
           L K  +LG LG   V I    GI+YS+PTLASA+ N+ P +TF+LA+ FRMEKV+ + RS
Sbjct: 78  LSKIGLLGFLGSMYV-ITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 121 SQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNI-QLP---VSEYSNWALGGLLLTV 176
           S AK++GT++S+ GA +V  Y GP +   SSP   N  QL     S  S+W +GG LLT+
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 177 ------------------------------TCFSSAT--------------WKI-FQAIV 191
                                          C S  T              W I F   +
Sbjct: 197 QGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL 256

Query: 192 GTVIRSSII--------AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT 243
            T++  +II        +W ++ KGP+++A+FKPL   IAV M  +FL ++ +LG LIG 
Sbjct: 257 ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGG 316

Query: 244 VVIAFGFYAVIWAQGKE 260
           ++I  GFYAV+W +  E
Sbjct: 317 ILITLGFYAVMWGKANE 333

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	99.97
PRK11689	295	aromatic amino acid exporter; Provisional	99.97
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.96
PRK15430	296	putative chloramphenical resistance permease RarD;	99.96
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.96
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.96
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.92
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.92
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.91
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.89
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.89
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.87
COG2962	293	RarD Predicted permeases [General function predict	99.86
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.8
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.79
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.78
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.64
COG2510	140	Predicted membrane protein [Function unknown]	99.63
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.61
KOG2765	416	consensus Predicted membrane protein [Function unk	99.57
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.38
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.33
KOG1580	337	consensus UDP-galactose transporter related protei	99.2
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.19
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.14
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.12
PRK11272	292	putative DMT superfamily transporter inner membran	99.12
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.06
COG2510	140	Predicted membrane protein [Function unknown]	98.99
PRK11689	295	aromatic amino acid exporter; Provisional	98.96
KOG2766	336	consensus Predicted membrane protein [Function unk	98.96
PLN00411	358	nodulin MtN21 family protein; Provisional	98.93
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.86
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.85
KOG1581	327	consensus UDP-galactose transporter related protei	98.83
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.81
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.81
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.74
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.74
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.74
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.72
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.71
PRK15430	296	putative chloramphenical resistance permease RarD;	98.66
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.62
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.58
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.54
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.53
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.52
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.47
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.42
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.41
PRK09541	110	emrE multidrug efflux protein; Reviewed	98.29
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.28
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.27
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.26
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.17
KOG1582	367	consensus UDP-galactose transporter related protei	98.09
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.04
COG2076	106	EmrE Membrane transporters of cations and cationic	97.96
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.93
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.91
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.89
PRK11431	105	multidrug efflux system protein; Provisional	97.85
PRK13499	345	rhamnose-proton symporter; Provisional	97.82
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.81
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.79
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.66
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.66
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.64
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.62
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	97.59
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.47
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.45
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.45
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.41
COG2076	106	EmrE Membrane transporters of cations and cationic	97.36
COG2962	293	RarD Predicted permeases [General function predict	97.35
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.3
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.26
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.19
PRK11431	105	multidrug efflux system protein; Provisional	97.17
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.13
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.86
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.8
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.02
KOG2765	416	consensus Predicted membrane protein [Function unk	95.08
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.65
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.47
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.46
PRK13499	345	rhamnose-proton symporter; Provisional	94.15
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.13
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.83
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.19
KOG1580	337	consensus UDP-galactose transporter related protei	92.82
KOG1581	327	consensus UDP-galactose transporter related protei	92.02
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	91.71
PRK02237	109	hypothetical protein; Provisional	91.68
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.35
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	89.62
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	88.97
KOG4831	125	consensus Unnamed protein [Function unknown]	88.72
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	86.26
KOG3912	372	consensus Predicted integral membrane protein [Gen	84.81
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	82.76
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	81.9
PRK13108	460	prolipoprotein diacylglyceryl transferase; Reviewe	81.65
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	80.81

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=1.3e-33  Score=252.01  Aligned_cols=256  Identities=38%  Similarity=0.616  Sum_probs=188.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC-CCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRS-KGPVLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      |++..++.+...++.|.+++.+++|..+.++|+.++++++++ .+.+  +++ +.++.+++++.++.+.|+++ ..++.+
T Consensus        18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~--~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~   94 (358)
T PLN00411         18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT--NRSRSLPPLSVSILSKIGLLGFLG-SMYVIT   94 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH--HHhcccCcchHHHHHHHHHHHHHH-HHHHHH
Confidence            567889999999999999998999999999999999999998 6554  332 23445577889999999998 788889


Q ss_pred             HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC---------
Q 023321           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF---------  149 (284)
Q Consensus        79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~---------  149 (284)
                      ++.|++++++++++++.+++|+++.+++++++.|+++.++|+++.+++|++++++|+.++...+++.....         
T Consensus        95 ~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~  174 (358)
T PLN00411         95 GYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFR  174 (358)
T ss_pred             HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccc
Confidence            99999999999999999999999999999996444444455555599999999999998864444211000         


Q ss_pred             CC---CCCCC-----CCcc----------c-----------hhh---hhH--HHHHHHH-HHHHhhh-------------
Q 023321          150 SS---PSNSN-----IQLP----------V-----------SEY---SNW--ALGGLLL-TVTCFSS-------------  181 (284)
Q Consensus       150 ~~---~~~~~-----~~~~----------~-----------~~~---~~~--~~g~~~~-~~~~~~~-------------  181 (284)
                      ..   .....     |+..          +           +..   ..|  ..+.... ..+....             
T Consensus       175 ~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  254 (358)
T PLN00411        175 QLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI  254 (358)
T ss_pred             ccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch
Confidence            00   00000     1100          0           000   000  1111111 0011100             


Q ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          182 ATW-KIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       182 ~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      ..+ .++. ++.+.++|.+|++++++.||++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+++++|
T Consensus       255 ~~~~i~y~-~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        255 TLITIVTM-AIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            001 1232 34567899999999999999999999999999999999999999999999999999999999998766544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.97  E-value=5.8e-29  Score=218.01  Aligned_cols=241  Identities=14%  Similarity=0.145  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      ++..++||++++++|...+ ++||.+++++|+.++++++++ ...+   ++ + ..+++++.+....|.++...++.+++
T Consensus        14 ~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~---~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~   87 (292)
T PRK11272         14 FALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR---GH-P-LPTLRQWLNAALIGLLLLAVGNGMVT   87 (292)
T ss_pred             HHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh---CC-C-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999996 899999999999999999888 5433   22 2 22456788888999887778889999


Q ss_pred             HHh-ccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC----
Q 023321           81 TGI-KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS----  155 (284)
Q Consensus        81 ~al-~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~----  155 (284)
                      .+. +++++++++++.+++|+++++++++ +|||++++      +++|+.++++|+.++. .+++...  +..+..    
T Consensus        88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~-~~~~~~~--~~~G~l~~l~  157 (292)
T PRK11272         88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLN-SGGNLSG--NPWGAILILI  157 (292)
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHh-cCccccc--chHHHHHHHH
Confidence            999 9999999999999999999999986 69999999      9999999999998874 2222111  000100    


Q ss_pred             -------------CCCccc---hhhhhHHHHHHHHHHHHhh----------hhH--HHHHHHHHHHHHHHHHHHHHHhhc
Q 023321          156 -------------NIQLPV---SEYSNWALGGLLLTVTCFS----------SAT--WKIFQAIVGTVIRSSIIAWCLQKK  207 (284)
Q Consensus       156 -------------~~~~~~---~~~~~~~~g~~~~~~~~~~----------~~~--~~~~~~~~~~~l~~~~~~~~l~~~  207 (284)
                                   ..+...   ........+...+......          ...  ...+.+++++.++|.+|++++|+.
T Consensus       158 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~  237 (292)
T PRK11272        158 ASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNV  237 (292)
T ss_pred             HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                         000000   0001112222222111110          011  234567888999999999999999


Q ss_pred             CccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          208 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       208 ~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      ++++++.+.+++|+++++++++++||+++..+++|+++++.|+++.+++++
T Consensus       238 ~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        238 RPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999876543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.97  E-value=2.6e-28  Score=214.16  Aligned_cols=240  Identities=15%  Similarity=0.118  Sum_probs=170.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (284)
                      +.+.++||++++..|...+ ++||..+.++|+.++.+++.+. .+  . +   +.++ +.++..+.+.++.+.++.+++.
T Consensus        10 l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~-~~--~-~---~~~~-~~~~~~~~~~l~~~~~~~~~~~   80 (295)
T PRK11689         10 LIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLT-VG--F-P---RLRQ-FPKRYLLAGGLLFVSYEICLAL   80 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHH-cc--c-c---cccc-ccHHHHHHHhHHHHHHHHHHHH
Confidence            5678999999999999996 8999999999999999888762 11  1 1   1111 1223345556666788888888


Q ss_pred             Hhcc----ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC---CC-CC
Q 023321           82 GIKY----SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF---SS-PS  153 (284)
Q Consensus        82 al~~----~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~---~~-~~  153 (284)
                      ++++    .++++++++.+++|+++.+++++++|||++++      +++|+.++++|+.++.. +++..+..   .. ..
T Consensus        81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~~~~~~~~~~  153 (295)
T PRK11689         81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSLAELINNIAS  153 (295)
T ss_pred             HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchhhhhhhcccc
Confidence            7764    57788999999999999999999999999999      99999999999988852 22111000   00 00


Q ss_pred             CCCCCcc--------------------chhhhh--HHHHHHHHHH-HHh--------hhhHH-HHHHHHHHHHHHHHHHH
Q 023321          154 NSNIQLP--------------------VSEYSN--WALGGLLLTV-TCF--------SSATW-KIFQAIVGTVIRSSIIA  201 (284)
Q Consensus       154 ~~~~~~~--------------------~~~~~~--~~~g~~~~~~-~~~--------~~~~~-~~~~~~~~~~l~~~~~~  201 (284)
                      ...|+..                    ......  ...+...+.. ...        ....+ .+...++.+.++|.+|+
T Consensus       154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~  233 (295)
T PRK11689        154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWN  233 (295)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0001100                    000000  1111111111 110        00011 12223467899999999


Q ss_pred             HHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          202 WCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       202 ~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      +++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++...++
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999998886544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=210.45  Aligned_cols=235  Identities=16%  Similarity=0.124  Sum_probs=172.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (284)
                      ++++++||++++++|...+ ++||..+.++|++++++.+++.. +  +++    .++   ......|+.....++.+++.
T Consensus        10 l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~-~--~~~----~~~---~~~~~~g~~~~~~~~~~~~~   78 (299)
T PRK11453         10 LLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV-A--RPK----VPL---NLLLGYGLTISFGQFAFLFC   78 (299)
T ss_pred             HHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh-c--CCC----Cch---HHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999996 79999999999999887666522 2  111    112   23445566555566778889


Q ss_pred             Hhcc-ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCcc
Q 023321           82 GIKY-SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP  160 (284)
Q Consensus        82 al~~-~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~  160 (284)
                      ++++ .++++++++.+++|+++.+++++++|||++++      +++|+.++++|+.++. .++......+.    .|+..
T Consensus        79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~-~~~~~~~~~~~----~G~~l  147 (299)
T PRK11453         79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI-EDSLNGQHVAM----LGFML  147 (299)
T ss_pred             HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc-cccCCCcchhH----HHHHH
Confidence            9998 58899999999999999999999999999999      9999999999998885 22111110000    01100


Q ss_pred             ---------------------chh--hhh---H--HHHHHHHHHHH-hh------------h----hHHHHHHHHHHHHH
Q 023321          161 ---------------------VSE--YSN---W--ALGGLLLTVTC-FS------------S----ATWKIFQAIVGTVI  195 (284)
Q Consensus       161 ---------------------~~~--~~~---~--~~g~~~~~~~~-~~------------~----~~~~~~~~~~~~~l  195 (284)
                                           ...  ...   +  ..+........ ..            +    ....++.+++++.+
T Consensus       148 ~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~  227 (299)
T PRK11453        148 TLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIV  227 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHH
Confidence                                 000  000   0  11111111000 00            0    01235667999999


Q ss_pred             HHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          196 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       196 ~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      +|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+++..+.++
T Consensus       228 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999999999999999999999877654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.96  E-value=9.8e-28  Score=210.60  Aligned_cols=243  Identities=12%  Similarity=0.044  Sum_probs=173.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC--CCc-CHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG--PVL-TFSLLCKFFMLGVLGICLVQI   77 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~g~~~~~~~~~   77 (284)
                      ++++++||.++++.|.. + ++||.++.++|++++.+++++ ...+  ++.+.  .+. +++++ .....+.++.+.++.
T Consensus        14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   88 (296)
T PRK15430         14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC--RQWSYLKTLIQTPQKI-FMLAVSAVLIGGNWL   88 (296)
T ss_pred             HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHcCHHHH-HHHHHHHHHHHHHHH
Confidence            56789999999999985 3 699999999999999988877 5443  11100  011 23333 334467777789999


Q ss_pred             HHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCC------
Q 023321           78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS------  151 (284)
Q Consensus        78 ~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~------  151 (284)
                      ++++|++++++++++++.++.|+++++++++++|||++++      +|.|++++++|+.++....++.. ....      
T Consensus        89 ~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~~~~-~~~l~aa~~~  161 (296)
T PRK15430         89 LFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFGSLP-IIALGLAFSF  161 (296)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcCCcc-HHHHHHHHHH
Confidence            9999999999999999999999999999999999999999      99999999999998852222110 0000      


Q ss_pred             --CCC---CCC-Cccch--hhhhH--HHHHHHHHHHHh------h---hhH-HHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 023321          152 --PSN---SNI-QLPVS--EYSNW--ALGGLLLTVTCF------S---SAT-WKIFQAIVGTVIRSSIIAWCLQKKGPVF  211 (284)
Q Consensus       152 --~~~---~~~-~~~~~--~~~~~--~~g~~~~~~~~~------~---~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~  211 (284)
                        ...   ... +....  ....+  ..+.........      .   +.. ...+..++.+.++|.+|++++|+.++++
T Consensus       162 a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~  241 (296)
T PRK15430        162 AFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLST  241 (296)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence              000   000 00000  00001  111111100000      0   001 1233345578899999999999999999


Q ss_pred             hhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321          212 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       212 ~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      ++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus       242 ~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        242 LGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888777543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.96  E-value=1e-26  Score=203.78  Aligned_cols=243  Identities=15%  Similarity=0.088  Sum_probs=174.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      |++++++|+.+++++|.+.+ ++||.++.++|++++.+++++...+   ++  .+.++|++...+..|+.. +..+.+++
T Consensus        17 ~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~---~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~   89 (293)
T PRK10532         17 LLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP---WR--LRFAKEQRLPLLFYGVSL-GGMNYLFY   89 (293)
T ss_pred             HHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH---Hh--ccCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence            46789999999999999996 7999999999999999888872211   11  134566777888888874 78888999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC--CCC
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS--NIQ  158 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~--~~~  158 (284)
                      ++++++|++.++++.++.|+++.+++    +||++        +..++.++++|+.++. ..+......+..+..  ...
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~~~~~~~~G~ll~l~a  156 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQDVSHVDLTGAALALGA  156 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCCcccCChHHHHHHHHH
Confidence            99999999999999999999998876    24432        3456778899998874 222111111100100  000


Q ss_pred             ------------------ccchhhhhHHHHHHHHHHHHhh--------hhH--HHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 023321          159 ------------------LPVSEYSNWALGGLLLTVTCFS--------SAT--WKIFQAIVGTVIRSSIIAWCLQKKGPV  210 (284)
Q Consensus       159 ------------------~~~~~~~~~~~g~~~~~~~~~~--------~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~  210 (284)
                                        ...........+...+......        ...  +.++.+++++.++|.+|++++|+.+++
T Consensus       157 a~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~  236 (293)
T PRK10532        157 GACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTR  236 (293)
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence                              0000001111222211111110        011  135777999999999999999999999


Q ss_pred             chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccccccc
Q 023321          211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM  263 (284)
Q Consensus       211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~~  263 (284)
                      +++.+.++||+++++++++++||+++..+++|+++++.|++...+..++|.+.
T Consensus       237 ~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~  289 (293)
T PRK10532        237 TFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI  289 (293)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999999999998766554433

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.96  E-value=1.3e-26  Score=199.73  Aligned_cols=226  Identities=19%  Similarity=0.202  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023321            8 EVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSS   87 (284)
Q Consensus         8 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~   87 (284)
                      ||.+++..|..++++.||.+..+.|++.+.+++.+...+   +     .+++++.+....|.++..+++.++++|+++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~   72 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLP   72 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999998767999999999999998888773322   2     23456778889999988999999999999999


Q ss_pred             HhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCC-----------
Q 023321           88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN-----------  156 (284)
Q Consensus        88 ~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~-----------  156 (284)
                      +++++++.+++|+++++++++++|||++++      +++|++++++|+.++. .+++...  ...+...           
T Consensus        73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~~~~~--~~~G~~~~l~a~~~~a~~  143 (260)
T TIGR00950        73 VGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDGNLSI--NPAGLLLGLGSGISFALG  143 (260)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCCcccc--cHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999      9999999999998875 3321111  1001000           


Q ss_pred             ----CCccchhh--------hhHHHHHHHHHHHHhh--------hhH--HHHHHHHHHHHHHHHHHHHHHhhcCccchhh
Q 023321          157 ----IQLPVSEY--------SNWALGGLLLTVTCFS--------SAT--WKIFQAIVGTVIRSSIIAWCLQKKGPVFVAL  214 (284)
Q Consensus       157 ----~~~~~~~~--------~~~~~g~~~~~~~~~~--------~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  214 (284)
                          .......+        .....+.+++......        ...  +..+.+++.+.++|.+|++++|+.++++++.
T Consensus       144 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~  223 (260)
T TIGR00950       144 TVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASI  223 (260)
T ss_pred             HHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence                00000000        0112222222221111        011  2455678889999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 023321          215 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGF  250 (284)
Q Consensus       215 ~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~  250 (284)
                      +.+++|+++++++++++||+++..++.|..+++.|+
T Consensus       224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999886

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.92  E-value=2.6e-23  Score=183.19  Aligned_cols=237  Identities=11%  Similarity=0.140  Sum_probs=169.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Q 023321           11 MITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL   90 (284)
Q Consensus        11 ~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~   90 (284)
                      ..+..|.++++..+|...+++|+..+.+.+.+.+..  ..+++++.+++++.+....|+++ +.++.+.++|+++++++.
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~   93 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS--GLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSF   93 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHH
Confidence            345789999633779999999999998776653211  22334557788999999999996 899999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC---------------
Q 023321           91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS---------------  155 (284)
Q Consensus        91 a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~---------------  155 (284)
                      ++++.++.|+++++++++++|||++++      ++.|++++++|+.+..  .++....  ..|..               
T Consensus        94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~~~~~--~~G~~~~l~a~~~~a~~~v~  163 (302)
T TIGR00817        94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTELSFN--WAGFLSAMISNITFVSRNIF  163 (302)
T ss_pred             HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCccccc--HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999      9999999999997653  1211110  00100               


Q ss_pred             -----C---CCccchhhhhHHHHHHHHHHHHhhhh-----H--H----------HHHH-HHHHHHHHHH----HHHHHHh
Q 023321          156 -----N---IQLPVSEYSNWALGGLLLTVTCFSSA-----T--W----------KIFQ-AIVGTVIRSS----IIAWCLQ  205 (284)
Q Consensus       156 -----~---~~~~~~~~~~~~~g~~~~~~~~~~~~-----~--~----------~~~~-~~~~~~l~~~----~~~~~l~  205 (284)
                           .   .+...........+.+++........     .  +          ..+. .++.+..++.    +++++++
T Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  243 (302)
T TIGR00817       164 SKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLG  243 (302)
T ss_pred             HHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 0   00000111122233333322221100     0  0          0111 1222332343    4557999


Q ss_pred             hcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          206 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       206 ~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      +.+++++++..+++|++++++|++++||+++..+++|.++++.|++++++.|.++
T Consensus       244 ~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~  298 (302)
T TIGR00817       244 RVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK  298 (302)
T ss_pred             cCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999998765433

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.92  E-value=2.4e-23  Score=181.48  Aligned_cols=237  Identities=12%  Similarity=0.112  Sum_probs=168.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      +.++++|+...+.+|...+ .-++  +.++++..+.+++.| ...+. .+++++..++ +++.....+..+...++.+++
T Consensus         7 ~~aa~~~a~~~~~~k~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         7 VFSALMHAGWNLMAKSHAD-KEPD--FLWWALLAHSVLLTPYGLWYL-AQVGWSRLPA-TFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             HHHHHHHHHHHHHHhhcCC-chhH--HHHHHHHHHHHHHHHHHHHhc-ccCCCCCcch-hhHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999997764 3444  347777777777777 44320 1222233333 445555556666789999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCC--C---
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--S---  155 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~--~---  155 (284)
                      +|+++.++++++++.++.|+++.+++++++|||++++      +|+|+.+++.|+.++.. ++...  .+..+.  .   
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~~~--~~~~g~~~~l~a  152 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRFAQ--HRRKAYAWALAA  152 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccccc--cchhHHHHHHHH
Confidence            9999999999999999999999999999999999999      99999999999988752 22111  110010  0   


Q ss_pred             ---------CCC-c---c---chhhhhHHHHHHHH----HHHHh----------hhh-HHHHHHHHHHHHHHHHHHHHHH
Q 023321          156 ---------NIQ-L---P---VSEYSNWALGGLLL----TVTCF----------SSA-TWKIFQAIVGTVIRSSIIAWCL  204 (284)
Q Consensus       156 ---------~~~-~---~---~~~~~~~~~g~~~~----~~~~~----------~~~-~~~~~~~~~~~~l~~~~~~~~l  204 (284)
                               ... .   .   .........+....    .....          ... ....+..++.+.++|.+|++++
T Consensus       153 al~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~al  232 (281)
T TIGR03340       153 ALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAM  232 (281)
T ss_pred             HHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     000 0   0   00000001111110    00000          000 1224566888999999999999


Q ss_pred             hhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 023321          205 QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  252 (284)
Q Consensus       205 ~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l  252 (284)
                      ++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++
T Consensus       233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       233 TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=99.91  E-value=8.2e-23  Score=175.85  Aligned_cols=214  Identities=12%  Similarity=0.076  Sum_probs=149.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCcCHH-HHHHHHHHHHHHHH
Q 023321            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFS-LLCKFFMLGVLGIC   73 (284)
Q Consensus         1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~~~~   73 (284)
                      +++++++||.++++.|. .+ ++||.++.++|++++.+++.+ ...+  ++++     .++.+++ ++......|++ .+
T Consensus         7 ~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~   81 (256)
T TIGR00688         7 SLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF--RQWAALIERLKRIQKRPLILSLLLCGLL-IG   81 (256)
T ss_pred             HHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHhCcccchHHHHHHHHHHH-HH
Confidence            35788999999999998 43 699999999999999988777 4333  2111     1111222 24446667776 58


Q ss_pred             HHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCC
Q 023321           74 LVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS  153 (284)
Q Consensus        74 ~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~  153 (284)
                      .++.++++|++++++++++++.+++|+++++++++++|||++++      +++++.++++|+.++...+++..  .  ..
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~~~~--~--~~  151 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKGSLP--W--EA  151 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcCCch--H--HH
Confidence            99999999999999999999999999999999999999999999      99999999999988753222110  0  00


Q ss_pred             CCC-----------CCccchhhhhHHHHHHHHHHHHh------hh---------hH--HHHHHHHHHHHHHHHHHHHHHh
Q 023321          154 NSN-----------IQLPVSEYSNWALGGLLLTVTCF------SS---------AT--WKIFQAIVGTVIRSSIIAWCLQ  205 (284)
Q Consensus       154 ~~~-----------~~~~~~~~~~~~~g~~~~~~~~~------~~---------~~--~~~~~~~~~~~l~~~~~~~~l~  205 (284)
                      +..           .............+.........      .+         ..  +..+.+ +.+.++|.+|++++|
T Consensus       152 l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~t~i~~~l~~~a~~  230 (256)
T TIGR00688       152 LVLAFSFTAYGLIRKALKNTDLAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAG-LITGTPLLAFVIAAN  230 (256)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            000           00000000111111111111000      00         01  223334 458899999999999


Q ss_pred             hcCccchhhhhchHHHHHHHHHHHH
Q 023321          206 KKGPVFVALFKPLGTAIAVFMAVMF  230 (284)
Q Consensus       206 ~~~~~~~~~~~~l~pv~a~i~~~~~  230 (284)
                      +.++++++.+.|++|+++++++.+.
T Consensus       231 ~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       231 RLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.89  E-value=5.6e-21  Score=167.82  Aligned_cols=238  Identities=16%  Similarity=0.186  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            4 VEIGEVGMITLGKAAMSSGMS-NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (284)
Q Consensus         4 ~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (284)
                      .+++-..+...+....+++.+ |..-.+.-++.-.++..+ ...|+ .+++..+..+++|+++++++++. ...+.+...
T Consensus        21 lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~   98 (334)
T PF06027_consen   21 LSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLALLD-VEANYLVVL   98 (334)
T ss_pred             HHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence            356677788888887765554 555556656555555555 44431 11122223346788899999998 788999999


Q ss_pred             HhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC-CCCCCCCCCcc
Q 023321           82 GIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF-SSPSNSNIQLP  160 (284)
Q Consensus        82 al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~-~~~~~~~~~~~  160 (284)
                      |++|++.+.+.++..+.-+++++++++++|||.++.      |++|++++++|+.++...+....+.. +..+-      
T Consensus        99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~------  166 (334)
T PF06027_consen   99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGSDSSSGSNP------  166 (334)
T ss_pred             HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccccCCCCCcc------
Confidence            999999999999999999999999999999999999      99999999999998865543322211 11111      


Q ss_pred             chhhhhHHHHHHHHHHHHhhhhHHHHH---------------------------------------------------HH
Q 023321          161 VSEYSNWALGGLLLTVTCFSSATWKIF---------------------------------------------------QA  189 (284)
Q Consensus       161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------------------------------------------~~  189 (284)
                             ..|.++.+.++..++..++.                                                   ..
T Consensus       167 -------i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~  239 (334)
T PF06027_consen  167 -------ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY  239 (334)
T ss_pred             -------chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH
Confidence                   22333333333222222211                                                   11


Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccccc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  262 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~  262 (284)
                      .++..+-|.+....++..+|+..++-.....+++++++++++|+++++..++|.++|+.|+++++..++++.+
T Consensus       240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            4455556667778899999999999999999999999999999999999999999999999999876654433

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.89  E-value=9.3e-21  Score=169.81  Aligned_cols=234  Identities=14%  Similarity=0.113  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023321            9 VGMITLGKAAMSSGMS-NFVYVVYYNALGTFILLHYFIYNTYRSKGPVL--TFSLLCKFFMLGVLGICLVQIFAITGIKY   85 (284)
Q Consensus         9 g~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~al~~   85 (284)
                      .......|.+++ .+| |..++++|++++.++....+..  ..+++++.  .++++..++..|+++... +...+.|+++
T Consensus        62 ~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~  137 (350)
T PTZ00343         62 VLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWAT--GFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGL  137 (350)
T ss_pred             HHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence            344667899986 699 9999999999998876553322  12222333  245778899999998554 5557799999


Q ss_pred             ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC----------
Q 023321           86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS----------  155 (284)
Q Consensus        86 ~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~----------  155 (284)
                      ++++.++++.++.|+++++++++++|||++++      ++.+++++++|+.+...  ++....  ..|+.          
T Consensus       138 ~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~~~~~--~~G~~~~l~s~~~~a  207 (350)
T PTZ00343        138 GAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KELHFT--WLAFWCAMLSNLGSS  207 (350)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--ccchhH--HHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999      99999999999998852  221111  00110          


Q ss_pred             ----------CCCc----cchhhhh----HHHHHHHHHHHHhhh------hH-------------HHHHHHHHHHHHHHH
Q 023321          156 ----------NIQL----PVSEYSN----WALGGLLLTVTCFSS------AT-------------WKIFQAIVGTVIRSS  198 (284)
Q Consensus       156 ----------~~~~----~~~~~~~----~~~g~~~~~~~~~~~------~~-------------~~~~~~~~~~~l~~~  198 (284)
                                .+..    .......    ...|.++.+......      ..             ..+...++.+++.|.
T Consensus       208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~  287 (350)
T PTZ00343        208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYY  287 (350)
T ss_pred             HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Confidence                      0000    0000111    123333332221111      00             012224677899999


Q ss_pred             HHHH----HHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321          199 IIAW----CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       199 ~~~~----~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      +|+.    +++++++...++..+++|+++++.+++++||+++..+++|.++++.|++++++-
T Consensus       288 l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        288 LYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            9995    999999999999999999999999999999999999999999999999998754

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.87  E-value=1.2e-19  Score=158.04  Aligned_cols=245  Identities=21%  Similarity=0.210  Sum_probs=173.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (284)
                      ++.++.|+.+....|...+...++....+.|++.+.+...+...+  ++....+..+ ++.+..+.+.++...++.+++.
T Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   89 (292)
T COG0697          13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGLRPALR-PWLLLLLLALLGLALPFLLLFL   89 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hccccccccc-chHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999998633778888888999999885542222  1111112221 2456677777778999999999


Q ss_pred             HhccccHhHHHHHhhhhHHHHHHHHH-HHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC--CCC
Q 023321           82 GIKYSSPTLASAMGNLIPGITFLLAV-FFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS--NIQ  158 (284)
Q Consensus        82 al~~~~~~~a~il~~~~Pi~~~lla~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~--~~~  158 (284)
                      ++++++++.++++.+++|+++.++++ +++|||++++      ++.++.+++.|+.++...+...... ...+..  ...
T Consensus        90 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~~~~-~~~g~~~~l~a  162 (292)
T COG0697          90 ALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGGGIL-SLLGLLLALAA  162 (292)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcchhH-HHHHHHHHHHH
Confidence            99999999999999999999999997 6679999999      9999999999999885322221110 000000  000


Q ss_pred             -c---c--------chhhhhHHHH------HHHHHHHHhh--------h--hHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 023321          159 -L---P--------VSEYSNWALG------GLLLTVTCFS--------S--ATWKIFQAIVGTVIRSSIIAWCLQKKGPV  210 (284)
Q Consensus       159 -~---~--------~~~~~~~~~g------~~~~~~~~~~--------~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~  210 (284)
                       .   .        .........+      ..........        .  .....+.+++.+++++.+|++++++.++.
T Consensus       163 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~  242 (292)
T COG0697         163 ALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGAS  242 (292)
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence             0   0        0000000111      0111101000        0  01223455777779999999999999999


Q ss_pred             chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321          211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      .++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus       243 ~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         243 LVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998865

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.86  E-value=9.9e-20  Score=153.07  Aligned_cols=247  Identities=14%  Similarity=0.041  Sum_probs=184.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-C-CCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-G-PVLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      +.+.++||..+.+.|...  +.|+.++...|...+..+++. ....+ +.++ + ...++|.+..+.+.+.+ ++.+...
T Consensus        13 l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r-~~~~~~~~~~~p~~~~~~~l~a~l-i~~nW~l   88 (293)
T COG2962          13 LLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLR-QWRELKQLLKQPKTLLMLALTALL-IGLNWWL   88 (293)
T ss_pred             HHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCcHHHHHHHHHHHH-HHHHHHH
Confidence            467899999999999875  699999999999999998887 43320 1111 1 12345566777777777 6999999


Q ss_pred             HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC-------CC
Q 023321           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF-------SS  151 (284)
Q Consensus        79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~-------~~  151 (284)
                      |.+|.++..+-++++=.+..|++.++++.+++|||+++.      |++++.++.+||.......|+..-..       ..
T Consensus        89 fiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~  162 (293)
T COG2962          89 FIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGL  162 (293)
T ss_pred             hheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999      99999999999988864444321100       00


Q ss_pred             CCCCCCCccchhhhhHHHHHHHHHHHHhhh----------------h-HHHHHHHHHHHHHHHHHHHHHHhhcCccchhh
Q 023321          152 PSNSNIQLPVSEYSNWALGGLLLTVTCFSS----------------A-TWKIFQAIVGTVIRSSIIAWCLQKKGPVFVAL  214 (284)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  214 (284)
                      ++..+.....+......+-++.+...+..+                . ...+...+..|.++..+|..+-|+++-+..+.
T Consensus       163 Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~  242 (293)
T COG2962         163 YGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGF  242 (293)
T ss_pred             HHHHHHhcCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            000000000011111111122222221111                1 12234558889999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          215 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       215 ~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      ++|++|..-.+++++++||+++..++...++|..|+++...+..
T Consensus       243 lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         243 LQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876544

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.80  E-value=1.4e-17  Score=136.81  Aligned_cols=212  Identities=17%  Similarity=0.161  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Q 023321           11 MITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL   90 (284)
Q Consensus        11 ~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~   90 (284)
                      ...+.|.... ..+|...+.+|..++.+++++.+     |.++.+.+++++..++..|.. .+..|.+||.+++..|.+.
T Consensus        27 Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~-----RPwr~r~~~~~~~~~~~yGvs-Lg~MNl~FY~si~riPlGi   99 (292)
T COG5006          27 GASFAKSLFP-LVGAAGVTALRLAIAALILLALF-----RPWRRRLSKPQRLALLAYGVS-LGGMNLLFYLSIERIPLGI   99 (292)
T ss_pred             hHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHh-----hHHHhccChhhhHHHHHHHHH-HHHHHHHHHHHHHhccchh
Confidence            3456777775 69999999999999999988632     233346777889999999998 4899999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCccchhhhhHHHH
Q 023321           91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG  170 (284)
Q Consensus        91 a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  170 (284)
                      +.-+.++-|+...+++.    +|  .+      ..+.+.+++.|+.++. ..++.....+                 ..|
T Consensus       100 AVAiEF~GPL~vA~~~s----Rr--~~------d~vwvaLAvlGi~lL~-p~~~~~~~lD-----------------p~G  149 (292)
T COG5006         100 AVAIEFTGPLAVALLSS----RR--LR------DFVWVALAVLGIWLLL-PLGQSVWSLD-----------------PVG  149 (292)
T ss_pred             hhhhhhccHHHHHHHhc----cc--hh------hHHHHHHHHHHHHhhe-eccCCcCcCC-----------------HHH
Confidence            99999999999877643    22  23      6777888899998884 3333222111                 122


Q ss_pred             HHHHHHHHhhhhHHH------------------------------------------------HHHHHHHHHHHHHHHHH
Q 023321          171 GLLLTVTCFSSATWK------------------------------------------------IFQAIVGTVIRSSIIAW  202 (284)
Q Consensus       171 ~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~  202 (284)
                      ..+.+.+..+|+.|.                                                +-.+++++.+.|.+-..
T Consensus       150 v~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmi  229 (292)
T COG5006         150 VALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMI  229 (292)
T ss_pred             HHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHH
Confidence            222222222222221                                                22348899999999999


Q ss_pred             HHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccc
Q 023321          203 CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  259 (284)
Q Consensus       203 ~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~  259 (284)
                      +++|.+....+.+..+||.++.+.|++++||+++..||.|.++++.+..-.....+|
T Consensus       230 AL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~  286 (292)
T COG5006         230 ALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK  286 (292)
T ss_pred             HHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence            999999999999999999999999999999999999999999999887766554433

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.79  E-value=7.9e-20  Score=150.92  Aligned_cols=241  Identities=15%  Similarity=0.134  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023321            5 EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI   83 (284)
Q Consensus         5 ~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al   83 (284)
                      +.++....++.+..+  +.+|.+..-.|.+.-++...| ...+   +.. ....+....++++.|++| .....+.|+|+
T Consensus        46 s~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~---~~~-v~gp~g~R~~LiLRg~mG-~tgvmlmyya~  118 (346)
T KOG4510|consen   46 SYFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYY---MQP-VIGPEGKRKWLILRGFMG-FTGVMLMYYAL  118 (346)
T ss_pred             HHHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEE---eee-eecCCCcEEEEEeehhhh-hhHHHHHHHHH
Confidence            355555666666666  489999999998877777777 3332   111 111111224557788887 67788899999


Q ss_pred             ccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCccchh
Q 023321           84 KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSE  163 (284)
Q Consensus        84 ~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~  163 (284)
                      +|++.++|+++.+++|.|+.+++|+++|||.++.      +.++..+.+.||.+++-  .+...+....+....+..+..
T Consensus       119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR--PpFlFG~~t~g~~~s~~~~~~  190 (346)
T KOG4510|consen  119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR--PPFLFGDTTEGEDSSQVEYDI  190 (346)
T ss_pred             hhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec--CCcccCCCccccccccccccC
Confidence            9999999999999999999999999999999999      99999999999999862  222111111111000000000


Q ss_pred             -hh-----------------------------hH---HHHHHHHHHHHhhhhHH----------HHHHHHHHHHHHHHHH
Q 023321          164 -YS-----------------------------NW---ALGGLLLTVTCFSSATW----------KIFQAIVGTVIRSSII  200 (284)
Q Consensus       164 -~~-----------------------------~~---~~g~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~  200 (284)
                       ..                             .+   .++.+...+.+...+.+          ....-++.+.+++++.
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIll  270 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILL  270 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHH
Confidence             00                             00   00111111100000000          0011177789999999


Q ss_pred             HHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          201 AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       201 ~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      +.++|+-.+..+++..+...+++.++.++++||.|+++.|.|+++++.+.+....+|...
T Consensus       271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~  330 (346)
T KOG4510|consen  271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG  330 (346)
T ss_pred             HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999887666544

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.78  E-value=5e-17  Score=142.13  Aligned_cols=237  Identities=16%  Similarity=0.169  Sum_probs=164.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcC-HHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLT-FSLLCKFFMLGVLGICLVQIFA   79 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~   79 (284)
                      ++++++||++++..|...  +.++.++.  |..++.+++.. ....  + +  ++.+ ++.+..-.+.|++ .+..+.++
T Consensus         7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~--~-~--~~~~~~~~~~~g~l~G~~-w~ig~~~~   76 (290)
T TIGR00776         7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF--V-L--PEFWALSIFLVGLLSGAF-WALGQINQ   76 (290)
T ss_pred             HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH--h-C--CcccccHHHHHHHHHHHH-HHhhhhhH
Confidence            467899999999999865  68888776  78888777765 3333  2 1  1122 2233333444444 68889999


Q ss_pred             HHHhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchh----hHHHHHHhhhhhhhhcccCCCCCC---CC-
Q 023321           80 ITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLG---FS-  150 (284)
Q Consensus        80 ~~al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~---~~-  150 (284)
                      +.++++++.+.+..+.+ +.++++.+.+.+++|||.+++      +    ++|+++.++|+.++...+++....   .+ 
T Consensus        77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~  150 (290)
T TIGR00776        77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF  150 (290)
T ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence            99999999999999888 999999999999999999998      8    999999999998875332221110   00 


Q ss_pred             CCCCCCC---Ccc------------chhh-hh--HHH----HHHHHHHHH---hhh---hHH-HHHHHHHHHHHHHHHHH
Q 023321          151 SPSNSNI---QLP------------VSEY-SN--WAL----GGLLLTVTC---FSS---ATW-KIFQAIVGTVIRSSIIA  201 (284)
Q Consensus       151 ~~~~~~~---~~~------------~~~~-~~--~~~----g~~~~~~~~---~~~---~~~-~~~~~~~~~~l~~~~~~  201 (284)
                      ..++..+   ...            ++.. ..  ...    +........   -.+   ..+ .+..+++ ..+++.+|.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~y~  229 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFFYL  229 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            0011000   000            0000 00  011    111111110   000   111 2233344 799999999


Q ss_pred             HHHh-hcCccchhhhhchHHHHHHHHHHHHhCCCCchhhH----HHHHHHHHHHHHhhc
Q 023321          202 WCLQ-KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVIW  255 (284)
Q Consensus       202 ~~l~-~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~----~G~~li~~g~~l~~~  255 (284)
                      .+.+ +.+++.++.+.+.+|+.+.+++++++||+.+..++    +|.++++.|+.+...
T Consensus       230 ~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       230 FSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            9999 99999999999999999999999999999999999    999999999988754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.64  E-value=1.5e-15  Score=115.78  Aligned_cols=124  Identities=22%  Similarity=0.302  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023321            6 IGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIK   84 (284)
Q Consensus         6 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~   84 (284)
                      ++||...++.|...+ +.||....++|+..+.+ +++ ....  ++++....+++++......|.++...++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLIL--GRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhh--ccccccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            479999999999996 69999999999999997 555 4443  333235666778888899999977999999999999


Q ss_pred             cccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           85 YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        85 ~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +.+++.++.+.+++|+++.+++++++|||++++      +++|+.+.+.|+.++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999998763

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.63  E-value=1.6e-15  Score=112.01  Aligned_cols=128  Identities=15%  Similarity=0.167  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-CCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-PVLTFSLLCKFFMLGVLGICLVQIFA   79 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~   79 (284)
                      ++++++||...++.|...+ ++||...++.|.....+++.. ....  .+.+. -..++|.|..+.+-|+.+ ++...+|
T Consensus         9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~--g~~~~~~~~~~k~~lflilSGla~-glswl~Y   84 (140)
T COG2510           9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT--GNWQAGGEIGPKSWLFLILSGLAG-GLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc--CceecccccCcceehhhhHHHHHH-HHHHHHH
Confidence            4688999999999999995 899999999999999988887 5443  22221 124667788888888665 9999999


Q ss_pred             HHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        80 ~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      |.|++..+++....+..++|+++++++++++|||++.+      +|+|+.+..+|++++.
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999      9999999999998764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.61  E-value=2.5e-13  Score=119.69  Aligned_cols=224  Identities=15%  Similarity=0.178  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHH
Q 023321           25 NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITF  103 (284)
Q Consensus        25 p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~  103 (284)
                      |..+++..+....+.-.+ ....   +  .++.++..+.++...+++. .+...+.+.|++|.|.+.-.+.-++.|++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm  105 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLF---K--FPKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVM  105 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhc---c--ccCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence            889999999998887766 3332   2  1222233456677888875 8889999999999999999999999999999


Q ss_pred             HHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCC--CCCCc------------------c---
Q 023321          104 LLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--SNIQL------------------P---  160 (284)
Q Consensus       104 lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~--~~~~~------------------~---  160 (284)
                      +++.+++|+|.+++      ++.++++..+|+.+....+............  ..|..                  .   
T Consensus       106 i~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~  179 (303)
T PF08449_consen  106 ILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKK  179 (303)
T ss_pred             HHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999      9999999999999987554333222111100  00110                  0   


Q ss_pred             chh------hhhHHHHHHHHHHHHhh--hh---------------HHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhc
Q 023321          161 VSE------YSNWALGGLLLTVTCFS--SA---------------TWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKP  217 (284)
Q Consensus       161 ~~~------~~~~~~g~~~~~~~~~~--~~---------------~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~  217 (284)
                      +..      ......+..+.......  ..               ...+....+...++....++..++.++...+++..
T Consensus       180 ~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t  259 (303)
T PF08449_consen  180 YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTT  259 (303)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHH
Confidence            000      01112222222221111  00               01122225666777788888999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          218 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       218 l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      +.-+++++++++++|+++++.+|+|.+++..|..+....|+|+
T Consensus       260 ~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  260 LRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999998776554

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.57  E-value=1.2e-13  Score=119.79  Aligned_cols=187  Identities=22%  Similarity=0.277  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCC
Q 023321           65 FMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGP  144 (284)
Q Consensus        65 ~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~  144 (284)
                      +....+ ....+.++..|+.+++++..+++.+++.+|+..++.++..||+++.      |.+++.+.+.|++++...+..
T Consensus       163 l~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  163 LFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence            333444 5888999999999999999999999999999999999999999999      999999999999988654332


Q ss_pred             CCCCCCCCCCCCCCc-------cc----------------hhhhhHHHHHHHHHHHHhhhhHHHH---------------
Q 023321          145 PLLGFSSPSNSNIQL-------PV----------------SEYSNWALGGLLLTVTCFSSATWKI---------------  186 (284)
Q Consensus       145 ~~~~~~~~~~~~~~~-------~~----------------~~~~~~~~g~~~~~~~~~~~~~~~~---------------  186 (284)
                      ..+.........|+.       .|                ..+.+..+|.+-++--...|+...+               
T Consensus       236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~  315 (416)
T KOG2765|consen  236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSST  315 (416)
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCc
Confidence            211111000011110       00                0011223333333322233322221               


Q ss_pred             ------HHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          187 ------FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       187 ------~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                            +.+.+.+.++=++|.++.-..++..+++-+.++.+++++.+.++-|.++++.+++|.+.|.+|.+.++...+
T Consensus       316 q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~  393 (416)
T KOG2765|consen  316 QFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE  393 (416)
T ss_pred             eeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence                  122889999999999999999999999999999999999999988999999999999999999999987654

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.38  E-value=1.8e-12  Score=97.36  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHH-HHHHhhhcC--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHH
Q 023321           30 VYYNALGTFILLH-YFIYNTYRS--KGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLA  106 (284)
Q Consensus        30 ~~R~~~a~l~l~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla  106 (284)
                      .+|+..+.+++.. ...+  ++.  ..+..+++.+.+.+..|.++...++.++++|.++.+ +.++.+.+++|+++++++
T Consensus         2 a~r~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~   78 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIR--GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLS   78 (113)
T ss_pred             HHHHHHHHHHHHHHHHHH--ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHH
Confidence            5799999998888 5554  221  112334455677777788886799999999999999 588899999999999999


Q ss_pred             HHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321          107 VFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus       107 ~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      ++++|||++++      ++.++.++++|+.++..
T Consensus        79 ~~~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   79 WLFFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            99999999999      99999999999999863

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.33  E-value=4e-11  Score=103.18  Aligned_cols=124  Identities=19%  Similarity=0.241  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSN--FVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      ++++++|+...+..|...+ +.+|  .....+|+.++.+++.+ .+..  ++.  +..+.+++......|.++....+.+
T Consensus       134 l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  208 (260)
T TIGR00950       134 LGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFL--GPN--PQALSLQWGALLYLGLIGTALAYFL  208 (260)
T ss_pred             HHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhc--CCC--CCcchHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999985 5664  45555789999999888 5543  222  2335667778888999888899999


Q ss_pred             HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhh
Q 023321           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (284)
Q Consensus        79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  136 (284)
                      +++++++.+++.++.+.+++|+++++++++++||+++.+      ++.|..+.+.|++
T Consensus       209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~~  260 (260)
T TIGR00950       209 WNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999      9999999999873

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=8.3e-10  Score=90.40  Aligned_cols=183  Identities=13%  Similarity=0.161  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccC
Q 023321           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKG  143 (284)
Q Consensus        64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~  143 (284)
                      +..+++- +-+..+..+.|+++.|=....+--++-|+=+++++.++.+++-+|+      +..+++..+.|++++. ++.
T Consensus        88 YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~  159 (337)
T KOG1580|consen   88 YAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKE  159 (337)
T ss_pred             HHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccc
Confidence            3444444 5777888999999999888888899999999999999999999998      9999999999999985 554


Q ss_pred             CCCCCCCCCCCCCCCc---------------------cch-hh-----hhHHHHHHHHHHHHh---------------hh
Q 023321          144 PPLLGFSSPSNSNIQL---------------------PVS-EY-----SNWALGGLLLTVTCF---------------SS  181 (284)
Q Consensus       144 ~~~~~~~~~~~~~~~~---------------------~~~-~~-----~~~~~g~~~~~~~~~---------------~~  181 (284)
                      +...+........|..                     .+. ..     ....-..+++..+.+               .+
T Consensus       160 ~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~  239 (337)
T KOG1580|consen  160 NKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPY  239 (337)
T ss_pred             cccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccH
Confidence            3222111111111110                     010 00     111111121111111               11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321          182 ATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  254 (284)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~  254 (284)
                      ..|.+..-.+++.+|+++....+...+|-.-+++....-.++++.++++++.++++.||+|..++..+...=.
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            2344555589999999999999999999999999999999999999999999999999999999999887744

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.7e-08  Score=86.73  Aligned_cols=252  Identities=10%  Similarity=0.092  Sum_probs=166.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-HHHHhhh--cCCCC------CcCHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSG---MSNFVYVVYYNALGTFILLH-YFIYNTY--RSKGP------VLTFSLLCKFFMLGV   69 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~-~~~~~~~--~~~~~------~~~~~~~~~~~~~g~   69 (284)
                      +...+.++......|..-..+   ..|....+.-=.+-.++... .+...++  ++...      ...+++..++.+=++
T Consensus        21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~  100 (345)
T KOG2234|consen   21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPAL  100 (345)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHH
Confidence            445667888888888876545   56777777766666655555 4433101  11111      123456778788788


Q ss_pred             HHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC
Q 023321           70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF  149 (284)
Q Consensus        70 ~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~  149 (284)
                      + +++.+-+.|.++.+.+++...+..++-.+-++++..+++++|.+++      ||.+..+.++|+.++-....+..+..
T Consensus       101 i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~~a~  173 (345)
T KOG2234|consen  101 I-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPTGAK  173 (345)
T ss_pred             H-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            7 4888889999999999999999999999999999999999999999      99999999999988842222211111


Q ss_pred             C---CCCCCCCCc-------------cc-------hhhhhH-------HHHHHHHHHHHhhh------------h-HHHH
Q 023321          150 S---SPSNSNIQL-------------PV-------SEYSNW-------ALGGLLLTVTCFSS------------A-TWKI  186 (284)
Q Consensus       150 ~---~~~~~~~~~-------------~~-------~~~~~~-------~~g~~~~~~~~~~~------------~-~~~~  186 (284)
                      +   ......|-.             .|       +..+.|       ..|.++.++.....            + .+..
T Consensus       174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v  253 (345)
T KOG2234|consen  174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV  253 (345)
T ss_pred             CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence            0   000000000             00       011111       23333333322110            0 0111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      +.-++..+++=.+-..-+|+.|-..=+....+..+++.+.++.++|-+++....+|..+++.++.++...+.++
T Consensus       254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            22245555555666677788887777777888899999999999999999999999999999999998554443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.14  E-value=1.9e-10  Score=100.32  Aligned_cols=236  Identities=14%  Similarity=0.189  Sum_probs=157.4

Q ss_pred             HHHHHHh--cCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Q 023321           14 LGKAAMS--SGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL   90 (284)
Q Consensus        14 ~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~   90 (284)
                      ..|..++  ..--|..++..++..+.+.++. -..+  ..+..+..++..+..++.+|++. ++...+-+.|+++.+++.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~--~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF  111 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK--LVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF  111 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc--CCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence            4577775  3344888888888888877766 3332  22222222445678889999995 999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC---------------
Q 023321           91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS---------------  155 (284)
Q Consensus        91 a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~---------------  155 (284)
                      ...+-.++|+++.++++++.+|+.+.+      .+..++....|+.+-...  +.....  .|+.               
T Consensus       112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--e~~fn~--~G~i~a~~s~~~~al~~I~  181 (316)
T KOG1441|consen  112 YQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--ELSFNL--FGFISAMISNLAFALRNIL  181 (316)
T ss_pred             HHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--cccccH--HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999      888888888888776532  211111  0100               


Q ss_pred             -------CCCccchhhhhH---HHHHHHHHHHH--------h---hhhHH--HHHHHHHHHHHHH---HHHHHHHhhcCc
Q 023321          156 -------NIQLPVSEYSNW---ALGGLLLTVTC--------F---SSATW--KIFQAIVGTVIRS---SIIAWCLQKKGP  209 (284)
Q Consensus       156 -------~~~~~~~~~~~~---~~g~~~~~~~~--------~---~~~~~--~~~~~~~~~~l~~---~~~~~~l~~~~~  209 (284)
                             .+....+....+   .....+++...        .   ....|  .....++.+.+++   ..-+..+.+++|
T Consensus       182 ~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSa  261 (316)
T KOG1441|consen  182 SKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSA  261 (316)
T ss_pred             HHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCc
Confidence                   000000000000   00011111000        0   00000  0111122233333   444567899999


Q ss_pred             cchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccccc
Q 023321          210 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN  262 (284)
Q Consensus       210 ~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~  262 (284)
                      ..-++.+...-.+.+..++++++|+.++.+..|.++.+.|++++++.|.++++
T Consensus       262 lT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  262 LTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             hhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999987665543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.12  E-value=2.4e-09  Score=93.97  Aligned_cols=128  Identities=12%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      ++++++|+...+..|...+ +.+|...... .+++.+++.+ ....  ..  ....+...+...+..|+++..+.+.+++
T Consensus       154 l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        154 LGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQ--AG--EALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHc--cC--cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999874 6888777544 4566666666 4432  21  1223444455567889998899999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcc
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY  141 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~  141 (284)
                      +++++.+++.++++.+++|+++.++++++++|+++..      +++|..+.+.|++....+
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999      999999999999888543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.12  E-value=1.9e-09  Score=94.63  Aligned_cols=128  Identities=13%  Similarity=0.028  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      ++++++|+...+..|....  -++.....+++..+.+.+.+ ....  ........+.+.+..+...|+++..+.+.+++
T Consensus       156 l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~  231 (292)
T PRK11272        156 LIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLS--GERLTALPTLSGFLALGYLAVFGSIIAISAYM  231 (292)
T ss_pred             HHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHc--CCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999998652  34556778888888888877 5443  22111123456788888999998889999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +++++.++++++++.+++|+++++++++++||+++..      +++|..+.+.|+.+..
T Consensus       232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999      9999999999998874

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.06  E-value=1.8e-08  Score=85.82  Aligned_cols=179  Identities=18%  Similarity=0.275  Sum_probs=126.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhh
Q 023321           57 TFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (284)
Q Consensus        57 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  136 (284)
                      ++|+..++.+=+++ +...+.+.+.++++++++.-.++.++-.+++++++++++|+|++++      ||.++.+.++|+.
T Consensus        13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            35677888888888 4999999999999999999999999999999999999999999999      9999999999998


Q ss_pred             hhhcccCCCCCCCCCCCCCCCCccchhhhhHHHHHHHHHHHHhhhh----------------------------------
Q 023321          137 IVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSA----------------------------------  182 (284)
Q Consensus       137 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------------------------  182 (284)
                      ++-..+.......+..... ++   ........|....+.+++.-+                                  
T Consensus        86 lv~~~~~~~~~~~~~~~~~-~~---~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~  161 (244)
T PF04142_consen   86 LVQLSSSQSSDNSSSSSVH-HD---ASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL  161 (244)
T ss_pred             eeecCCccccccccccccc-cc---cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence            8743222221111100000 00   001111222222221111100                                  


Q ss_pred             -----------------H--HHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHH
Q 023321          183 -----------------T--WKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT  243 (284)
Q Consensus       183 -----------------~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~  243 (284)
                                       .  +..+.-++...++=.+....+|+.|...=+......-+++.+.+++++|.+++....+|.
T Consensus       162 ~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~  241 (244)
T PF04142_consen  162 ALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA  241 (244)
T ss_pred             HHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence                             0  011112555566667777889999999999999999999999999999999999999997


Q ss_pred             HHH
Q 023321          244 VVI  246 (284)
Q Consensus       244 ~li  246 (284)
                      .++
T Consensus       242 ~~V  244 (244)
T PF04142_consen  242 ALV  244 (244)
T ss_pred             ecC
Confidence            653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.99  E-value=2.4e-09  Score=79.51  Aligned_cols=70  Identities=23%  Similarity=0.302  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321          186 IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  255 (284)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~  255 (284)
                      +...++.++++..+|++++|...++++.++.-+.|+++++++++++||+++..+++|+.+|..|++++.+
T Consensus        70 lilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          70 LILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            3445789999999999999999999999999999999999999999999999999999999999988764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.96  E-value=1.4e-08  Score=89.24  Aligned_cols=124  Identities=14%  Similarity=0.159  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      ++++++|+...+..|...+ +.+|....+   ..+.+.+.+ ....  . ......+.+.+..+...|+ ...+.+.+++
T Consensus       162 l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~  233 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS--P-QPAMVFSLPAIIKLLLAAA-AMGFGYAAWN  233 (295)
T ss_pred             HHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh--c-CccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            5789999999999999874 678766532   333344443 3322  2 1112345556777776665 4588999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +++++.+++.++.+.++.|++++++++++++|+++..      +++|..+.+.|+.+..
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            9999999999999999999999999999999999999      9999999999997774

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.96  E-value=8.2e-09  Score=85.62  Aligned_cols=233  Identities=12%  Similarity=0.092  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023321           10 GMITLGKAAMSSGMS-NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSS   87 (284)
Q Consensus        10 ~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~   87 (284)
                      ..........+++++ |..-+|.-+..-+++-.| ..+|   +   +.+ +..|++++++++.. .=.+.+...|.||++
T Consensus        32 ~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR---~---~~~-~~~~~hYilla~~D-VEaNy~vV~AyQyTs  103 (336)
T KOG2766|consen   32 STAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFR---R---KYI-KAKWRHYILLAFVD-VEANYFVVKAYQYTS  103 (336)
T ss_pred             cchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhh---h---HHH-HHHHHHhhheeEEe-ecccEEEeeehhhcc
Confidence            333444444434443 777788888888888888 6554   2   122 33577789999987 556677889999999


Q ss_pred             HhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCc-------c
Q 023321           88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL-------P  160 (284)
Q Consensus        88 ~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~-------~  160 (284)
                      ...+.++..-....+.+++|+++|-|-++.      |+.|+.+|+.|+..+++.+-...+..+..+-..||.       .
T Consensus       104 mtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATl  177 (336)
T KOG2766|consen  104 MTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATL  177 (336)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEeccee
Confidence            999999999999999999999999999999      999999999999988765433322111111112222       1


Q ss_pred             c------------hhhhhHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 023321          161 V------------SEYSNWALGGLLLTVTCFSS-----------------ATWKIFQAIVGTVIRSSIIAWCLQKKGPVF  211 (284)
Q Consensus       161 ~------------~~~~~~~~g~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  211 (284)
                      |            ..+..-..|.+-+..+..+.                 .....+...++.++-|.+.-..+|..+++.
T Consensus       178 YaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~  257 (336)
T KOG2766|consen  178 YAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATM  257 (336)
T ss_pred             eeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceE
Confidence            1            11112233333333222211                 111112224444444455556678889999


Q ss_pred             hhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          212 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       212 ~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      .++-....-.++++.  ..||-+.++...+..+.+..|.+++..+++
T Consensus       258 ~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  258 FNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             EEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence            999888889999888  668989999999999999999999865443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.93  E-value=2.7e-08  Score=89.41  Aligned_cols=127  Identities=11%  Similarity=0.162  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH-HHHHhhhcCC-C---CCcCHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSN-FVYVVYYNALGTFILLH-YFIYNTYRSK-G---PVLTFSLLCKFFMLGVLGICLV   75 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~-~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~~~~~   75 (284)
                      +.++++|+...+..|.... ..|| ...+++....+.+.+.+ ....  ++.. .   ...... ...++..|+. ..+.
T Consensus       195 l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~i~y~~i~-t~la  269 (358)
T PLN00411        195 TIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVV--EKNNPSVWIIHFDIT-LITIVTMAII-TSVY  269 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHH--ccCCcccceeccchH-HHHHHHHHHH-HHHH
Confidence            4678999999999999875 4654 46677777776666655 3332  2211 1   112222 2234444554 4678


Q ss_pred             HHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        76 ~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +.++++++++.+++.+++..++.|++++++++++++|+++..      +++|.++.+.|+.+..
T Consensus       270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999      9999999999998875

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.86  E-value=6.6e-08  Score=82.34  Aligned_cols=221  Identities=15%  Similarity=0.135  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhhhcC---CCCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhH
Q 023321           25 NFVYVVYYNALGTFILLH-YFIYNTYRS---KGPVLTFSL-LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIP   99 (284)
Q Consensus        25 p~~~~~~R~~~a~l~l~~-~~~~~~~~~---~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~P   99 (284)
                      |..++.+..+.-.++-.. -...  +++   .+.+.++++ .+++..+|+.+ ++...+.+++++|++.+.-++.-++.+
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~--~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi  121 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLY--QCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSI  121 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH--hccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHH
Confidence            777777776665555443 1111  111   123445544 34566788775 899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCC---------CCCC--------CCCcc--
Q 023321          100 GITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS---------PSNS--------NIQLP--  160 (284)
Q Consensus       100 i~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~---------~~~~--------~~~~~--  160 (284)
                      +|+.+++.++.-||.++.      -..-+.+...|+.+++ ++....+....         .|+.        +++..  
T Consensus       122 ~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~  194 (349)
T KOG1443|consen  122 LFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAK  194 (349)
T ss_pred             HHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcccc
Confidence            999999999988999988      7777777777887775 44433221110         0110        00000  


Q ss_pred             ---c---hhhhhHHHHHHHHHHHHh-------hh----------hHHHHHHHHHHHHHHHHH---HHHHHhhcCccchhh
Q 023321          161 ---V---SEYSNWALGGLLLTVTCF-------SS----------ATWKIFQAIVGTVIRSSI---IAWCLQKKGPVFVAL  214 (284)
Q Consensus       161 ---~---~~~~~~~~g~~~~~~~~~-------~~----------~~~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~~  214 (284)
                         .   .....|..-.++.....+       .-          ..+.+-.-.++..+++.+   -..-+.+++....++
T Consensus       195 ~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSI  274 (349)
T KOG1443|consen  195 RNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSI  274 (349)
T ss_pred             CCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeH
Confidence               0   011122211111111111       00          011111123334444432   334568889999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321          215 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  255 (284)
Q Consensus       215 ~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~  255 (284)
                      .....-+-+.+++..+.+|+++...|.|..+...|+.+...
T Consensus       275 aGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  275 AGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999843

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.86  E-value=1e-07  Score=83.87  Aligned_cols=129  Identities=15%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCcCHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMS---NFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFSLLCKFFMLGVLGI   72 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~---p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~   72 (284)
                      ++++++|+...+..|...+ ..+   ......+-.+.+.+.+.. ....  +...     ....+.+.+..++.+|+++.
T Consensus       149 l~aal~~a~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~i~~t  225 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMS-HSTRPAVMSLVVWSALIPIIPFFVASLIL--DGSATMIHSLVTIDMTTILSLMYLAFVAT  225 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhc-ccCccchhHHHHHHHHHHHHHHHHHHHHh--cCchhhhhhhccCCHHHHHHHHHHHHHHH
Confidence            5788999999999999763 232   233344444444443333 2222  1111     12345677888999999999


Q ss_pred             HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      .+.+.++++++++.+++.++.+.+++|+++.++++++++|+++..      +++|..+.++|+.+..
T Consensus       226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999      9999999999998764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.85  E-value=6.8e-07  Score=76.29  Aligned_cols=188  Identities=20%  Similarity=0.168  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhh
Q 023321           59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (284)
Q Consensus        59 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  137 (284)
                      +.+..-++.|++ ....+...+.|.++...+.+..+.. .+-+.+.+.+.++++|.-+.+++  ..-..++++.++|+.+
T Consensus        43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence            677777888888 5999999999999999999998885 77778999999999998887621  1123477888888877


Q ss_pred             hhcccCCCCCCCCCCCCCCCC----------ccchhhh------------hHHHHHHHHHHHHhhhh-----------HH
Q 023321          138 VSLYKGPPLLGFSSPSNSNIQ----------LPVSEYS------------NWALGGLLLTVTCFSSA-----------TW  184 (284)
Q Consensus       138 i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~------------~~~~g~~~~~~~~~~~~-----------~~  184 (284)
                      ....+.+.....+..+...+-          ..|...+            ...+|.+.   +++.+.           .|
T Consensus       120 ts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i---~a~i~~~~~~~~~~~k~~~  196 (269)
T PF06800_consen  120 TSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLI---GAFIFNLFSKKPFFEKKSW  196 (269)
T ss_pred             hccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH---HHHHHhhcccccccccchH
Confidence            764333322211101111000          0010000            00111111   111110           11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchh----hHHHHHHHHHHHHH
Q 023321          185 KIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLG----SLIGTVVIAFGFYA  252 (284)
Q Consensus       185 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~----~~~G~~li~~g~~l  252 (284)
                      .-...++.-.++-.+|..+.++.|.+..-.+..+.++++.+.|.+++||+=+..    .++|.++++.|.++
T Consensus       197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            112236666778899999999999999999999999999999999999987754    45688888887664

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.8e-07  Score=78.51  Aligned_cols=224  Identities=13%  Similarity=0.128  Sum_probs=151.5

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHH
Q 023321           24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGIT  102 (284)
Q Consensus        24 ~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~  102 (284)
                      +|....+...+.+.++-.. +..+   +++  ...++.|+++...++.+ .+...+-+.|++|.+=..-.+--++=-+-+
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~---k~~--~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPV  123 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWW---KKE--LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPV  123 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcc---ccc--CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHH
Confidence            5778888888888777655 3222   121  22234578888888886 888899999999998776666666666667


Q ss_pred             HHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC-CC----------Ccc-----------
Q 023321          103 FLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS-NI----------QLP-----------  160 (284)
Q Consensus       103 ~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~-~~----------~~~-----------  160 (284)
                      ++...++.|.|.+..      +.....+.-.|+.++.+.+.+.+..-...... .|          |..           
T Consensus       124 mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~  197 (327)
T KOG1581|consen  124 MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKK  197 (327)
T ss_pred             HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc
Confidence            888899988888888      99999999999988876543331111000010 00          000           


Q ss_pred             -chhhhhHHHHH-----HHHHHHHhh-----hh----------HHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchH
Q 023321          161 -VSEYSNWALGG-----LLLTVTCFS-----SA----------TWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLG  219 (284)
Q Consensus       161 -~~~~~~~~~g~-----~~~~~~~~~-----~~----------~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~  219 (284)
                       .........|.     ++-......     .+          .+-+..--.+..+|+.+.++-+++.|+...+.++...
T Consensus       198 ~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttR  277 (327)
T KOG1581|consen  198 YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTR  277 (327)
T ss_pred             CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHH
Confidence             00011111111     111111000     00          0112222566788999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccc
Q 023321          220 TAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  259 (284)
Q Consensus       220 pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~  259 (284)
                      -.++..++.+.+|.+++..||.|..++..|+.+-...+.+
T Consensus       278 k~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  278 KMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987655544

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.81  E-value=3.2e-08  Score=75.64  Aligned_cols=77  Identities=16%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHH--HhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          182 ATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM--FLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~--~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      +...++.++++.++++.+|.+++++.+.+.+..+....++...+.++.  ++||+++..+++|.++|+.|+++..++++
T Consensus        47 p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         47 ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            334677889999999999999999999999999999999888888885  89999999999999999999999876443

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.81  E-value=1.2e-08  Score=88.95  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFV----YVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQ   76 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~----~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   76 (284)
                      ++++++|+...+..|...+ +.+|..    ...+.+....+.+.+ ...+  + ..........+......+.+...+.+
T Consensus       150 l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~s~l~~  225 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR--H-GRSMFPYARQILPSATLGGLMIGGAY  225 (281)
T ss_pred             HHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH--h-ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999987642 444432    223333333222222 1111  1 11111122234455666666668899


Q ss_pred             HHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhh
Q 023321           77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (284)
Q Consensus        77 ~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  137 (284)
                      .++++++++.+++.++.+.+++|+++.+++++++||+++..      +++|..+.++|+.+
T Consensus       226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999      99999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.74  E-value=2.6e-08  Score=75.44  Aligned_cols=69  Identities=23%  Similarity=0.493  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321          186 IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  254 (284)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~  254 (284)
                      .+.+++.+.+++.++++++++.++++++.+.+++|+++.+++++++||+++..+++|.++++.|+++.+
T Consensus        57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            334466678999999999999999999999999999999999999999999999999999999998875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.74  E-value=3.8e-08  Score=82.59  Aligned_cols=219  Identities=12%  Similarity=0.142  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHhHHHHHhhhhHHHHHH
Q 023321           26 FVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYS-SPTLASAMGNLIPGITFL  104 (284)
Q Consensus        26 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~a~il~~~~Pi~~~l  104 (284)
                      ..+++.+|++-+.-=++..-+  ....+++...|++.  ....++  ...+.+.++++++- +...=.++-+..++-++.
T Consensus        34 NLITFaqFlFia~eGlif~sk--f~~~k~kiplk~Y~--i~V~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~  107 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSK--FFTVKPKIPLKDYA--ITVAMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI  107 (330)
T ss_pred             eehHHHHHHHHHHhceeeecc--ccccCCCCchhhhh--eehhee--eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence            456666666554433331001  11112455554443  333333  56678888999884 555556677889999999


Q ss_pred             HHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCccchhhhhHHHHHHHHHHHHhhhhHH
Q 023321          105 LAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW  184 (284)
Q Consensus       105 la~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  184 (284)
                      ++|++.|+|-+.+      |..++.+.-+|+++.++.+...... ...+...++ -......|.+|...+..+.+..+..
T Consensus       108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~-~~~~l~~~~-~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS-KLSGLDSGS-AQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh-hhcccccCc-ccccchHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888      9999999999998887544332221 001111111 1234567778776655444332221


Q ss_pred             HHHH-----H-------------------------------------------------------HHHHHHHHHHHHHHH
Q 023321          185 KIFQ-----A-------------------------------------------------------IVGTVIRSSIIAWCL  204 (284)
Q Consensus       185 ~~~~-----~-------------------------------------------------------~~~~~l~~~~~~~~l  204 (284)
                      .+++     +                                                       ++...+.++...++.
T Consensus       180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgV  259 (330)
T KOG1583|consen  180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGV  259 (330)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhh
Confidence            1111     1                                                       566666666666554


Q ss_pred             ----hhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          205 ----QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       205 ----~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                          .+.++-.++++..+.-.++++++...++.++++..|+|.+++..|.++......
T Consensus       260 y~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~  317 (330)
T KOG1583|consen  260 YILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN  317 (330)
T ss_pred             hhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence                456777889999999999999999999999999999999999999999864433

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=5.5e-06  Score=71.48  Aligned_cols=240  Identities=14%  Similarity=0.077  Sum_probs=152.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHH--HHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Q 023321           11 MITLGKAAMSSGMSNFVYVV--YYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSP   88 (284)
Q Consensus        11 ~~~~~k~~~~~~~~p~~~~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~   88 (284)
                      +-+..|.++.+.=-|..+..  ++.+...+.+...-+.  +--+.++++++..++.+...++. .++...-..+++|.+.
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~--~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnV  103 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL--GLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNV  103 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh--ceeecCCcChHHHHHHccHHHHH-HHHHHHccccccccCc
Confidence            45667888764222444444  8888887776652111  11224667777788888888884 7888888999999999


Q ss_pred             hHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCC-CCC----------------
Q 023321           89 TLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLG-FSS----------------  151 (284)
Q Consensus        89 ~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~-~~~----------------  151 (284)
                      ..-+++-...|+++++....++|.|++++      .|.++...++|.......+-..... -.+                
T Consensus       104 pm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~k  177 (314)
T KOG1444|consen  104 PMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVK  177 (314)
T ss_pred             hHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988777777      9999998888887665322222111 000                


Q ss_pred             ---CCCCCCC---ccchhhhhHHHHHHHHH-HH---Hhh-----hh-----HHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 023321          152 ---PSNSNIQ---LPVSEYSNWALGGLLLT-VT---CFS-----SA-----TWKIFQAIVGTVIRSSIIAWCLQKKGPVF  211 (284)
Q Consensus       152 ---~~~~~~~---~~~~~~~~~~~g~~~~~-~~---~~~-----~~-----~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  211 (284)
                         .....++   ..++.......+..+.. ..   +..     +.     ....+.++.+-++ -++-..+.+..++..
T Consensus       178 k~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~i-sy~s~~ct~~~SAtT  256 (314)
T KOG1444|consen  178 KSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGI-SYTSFLCTRVNSATT  256 (314)
T ss_pred             HhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHH-HHHHHHHHhhccccc
Confidence               0000000   00111111111111100 00   000     00     1112222333233 244456778889999


Q ss_pred             hhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          212 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       212 ~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      .++.+...-..+.+.+.++.|++.++...+|..+-.+|-+++++.+.++
T Consensus       257 ~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~  305 (314)
T KOG1444|consen  257 TTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK  305 (314)
T ss_pred             eeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence            9999988888888888888899999999999999998888887765443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.72  E-value=7.9e-08  Score=84.69  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=98.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC---------cCHHHHHH-HHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV---------LTFSLLCK-FFMLGV   69 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~---------~~~~~~~~-~~~~g~   69 (284)
                      ++++++|+...+..|...++ +.+|..+.++....+.+.++| ....  +......         ........ .+..+.
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT--EGPPFLPHGFMQAISGVNVTKIYTVSLVAAM  228 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence            56889999999999998731 589999999999999999998 5543  2111000         01001111 223333


Q ss_pred             HHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        70 ~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ......+.+++.+++++++..+++.....|++++++++++++|+++..      +++|..+.+.|+.+..
T Consensus       229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence            233444567788999999999999999999999999999999999999      9999999999998875

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.71  E-value=3.1e-07  Score=68.48  Aligned_cols=70  Identities=21%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ....++.+++..+.++..+++..|.+.+..+.++.++++.+++++++|||++.+      +++|+.+.++|+.++.
T Consensus        39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            344455777889999999999999999999999999999999999999999999      9999999999998874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.66  E-value=6.5e-07  Score=78.69  Aligned_cols=128  Identities=13%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSG-MSNFVYVVYYNALGTFILLHYFIYNTYRSK-GPVLTFSLLCKFFMLGVLGICLVQIFA   79 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~   79 (284)
                      +.++++|+...+..|....++ .+......+-...+.+...+.. .  .... ........+..+...|+. ....+.++
T Consensus       155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~~  230 (296)
T PRK15430        155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA-D--SSTSHMGQNPMSLNLLLIAAGIV-TTVPLLCF  230 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc-c--CCcccccCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence            467899999999999874311 2223333333333333322211 1  0000 011112223444445554 47899999


Q ss_pred             HHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        80 ~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ++++++.+++.++++.+..|++..++++++++|+++..      +++|..+.++|+.++.
T Consensus       231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999      9999999999988874

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.62  E-value=9.6e-07  Score=77.46  Aligned_cols=188  Identities=19%  Similarity=0.282  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhccc
Q 023321           63 KFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYK  142 (284)
Q Consensus        63 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~  142 (284)
                      ..+..|+..+.....+.+.|+.+.|++..+.+....-++..+++..++|||++++      .+.|+.+++.|..++....
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeC
Confidence            3456677767888899999999999999999999999999999999999999999      9999999999998875433


Q ss_pred             CCCCCCCCC---------CCCC-------------------C-CC--c-cchhhhhHHHHHHH---------HHHHHh--
Q 023321          143 GPPLLGFSS---------PSNS-------------------N-IQ--L-PVSEYSNWALGGLL---------LTVTCF--  179 (284)
Q Consensus       143 ~~~~~~~~~---------~~~~-------------------~-~~--~-~~~~~~~~~~g~~~---------~~~~~~--  179 (284)
                      .......+.         ..+.                   . +.  . .+..... ..|...         .+-..+  
T Consensus       125 ~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~~i~vyi~i~s-l~Gs~tvl~~K~i~~~i~~~~~g  203 (300)
T PF05653_consen  125 PKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKPRYGRRNILVYISICS-LIGSFTVLSAKAISILIKLTFSG  203 (300)
T ss_pred             CCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcchhcccceEEEEEEec-cccchhhhHHHHHHHHHHHHhcC
Confidence            222111110         0000                   0 00  0 0000000 011100         000000  


Q ss_pred             -----hhhHHHHHHHHHHHHHHH-HHHHHHHhhcCccchhhhhchH-HHHHHHHHHHHhCCC--Cch----hhHHHHHHH
Q 023321          180 -----SSATWKIFQAIVGTVIRS-SIIAWCLQKKGPVFVALFKPLG-TAIAVFMAVMFLGET--PHL----GSLIGTVVI  246 (284)
Q Consensus       180 -----~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~~~l~-pv~a~i~~~~~~gE~--~~~----~~~~G~~li  246 (284)
                           .+..|.+....+.+.+.+ ...++++++.+++.+.++.+.. ...+.+-|.++++|.  .+.    ....|..++
T Consensus       204 ~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~i  283 (300)
T PF05653_consen  204 DNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLII  283 (300)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence                 011233333344444444 6667899999999888877654 445666677788875  334    335678888


Q ss_pred             HHHHHHhhccc
Q 023321          247 AFGFYAVIWAQ  257 (284)
Q Consensus       247 ~~g~~l~~~~~  257 (284)
                      +.|+++.+..|
T Consensus       284 i~GV~lL~~~~  294 (300)
T PF05653_consen  284 IIGVFLLSSSK  294 (300)
T ss_pred             HHhhheeeccC
Confidence            89999987544

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.58  E-value=2.1e-06  Score=74.44  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=99.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVV-YYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      ++++++|+...+..|...  ..++..... +.+........+....   ... .....+.+......|+++....+.+++
T Consensus       160 l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~  233 (292)
T COG0697         160 LAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS---GFG-APILSRAWLLLLYLGVFSTGLAYLLWY  233 (292)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc---ccc-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999876  467777666 4444233332222111   111 344556788899999998778999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ++++..+++.++.+.++.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999      9999999999998774

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.54  E-value=3.2e-06  Score=76.03  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-----------CCcCHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-----------PVLTFSLLCK   63 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~-----------~~~~~~~~~~   63 (284)
                      ++++++|+...++.|..+++      +.++.....+-...++++++| ....  +....           ..........
T Consensus       200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~l~  277 (350)
T PTZ00343        200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF--EGKKWVPVWTNYTANMTNYTKGIIIF  277 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHhhhcccccchHHHHH
Confidence            46789999999999998852      256777777778899999888 5433  21100           0101111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ..+.+.+...+.+...|++++++++...++..+..|+++.++++++++|+++..      +++|..+.+.|+.+..
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence            222333333444455557999999999999999999999999999999999999      9999999999997764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.53  E-value=5.1e-07  Score=67.34  Aligned_cols=65  Identities=14%  Similarity=0.009  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  254 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~  254 (284)
                      .+..++++.++.+++|+.+.+.+..+..+.++.+.+.|++++||+++..+++|.++++.|+++..
T Consensus        44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            35567799999999999999999999999999999999999999999999999999999998875

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.52  E-value=4.9e-06  Score=65.52  Aligned_cols=128  Identities=21%  Similarity=0.283  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC----C-----Cc--CHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG----P-----VL--TFSLLCK   63 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~----~-----~~--~~~~~~~   63 (284)
                      +.+.++-+...+..|...++      +.+|.+...+-...+.+++.| ....  ++.+.    .     ..  ..+.+..
T Consensus         6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T PF03151_consen    6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL--EGPQLSSFFSEIFGEELSSDPNFIFL   83 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHhhhhhhcchHHHHHH
Confidence            45778889999999998765      689999999999999999999 5554  32220    0     01  2244566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      +...|+++ ...+...+..++++++...++....-.+.+.++++++++|+++.+      ++.|+.+++.|+.+-
T Consensus        84 ~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   84 LILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhee
Confidence            66667775 789999999999999999999999999999999999999999999      999999999999653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.47  E-value=1.4e-06  Score=65.21  Aligned_cols=69  Identities=14%  Similarity=0.295  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          189 AIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      +.+....++.+|.+++++.+ ..++.+..+.|+++.++++++++|+++..++.|.+++..|+++..+.+.
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            34555588999999999999 5888999999999999999999999999999999999999999987543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.42  E-value=3.5e-06  Score=73.81  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNA---LGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      ++++++++...+..|..   +.||.+..+....   ++..++.+.. +  +.  ++. ..+..+...+.|++ ....+.+
T Consensus       158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~--~~~-~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-I--LA--KPL-KKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-h--cc--cch-HHHHHHHHHHHHHH-HHHHHHH
Confidence            45788899999999964   4889888555444   3433333311 1  11  222 33344555668888 5999999


Q ss_pred             HHHHhc-cccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhh----HHHHHHhhhhhhhh
Q 023321           79 AITGIK-YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKI----LGTVVSIAGAFIVS  139 (284)
Q Consensus        79 ~~~al~-~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~----~g~~l~~~Gv~li~  139 (284)
                      |+.+.+ +.+++.+.++.+..|+.+.+.+++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            999999 999999999999999999999999999999999      89    99999999998774

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.41  E-value=8.8e-06  Score=61.18  Aligned_cols=69  Identities=12%  Similarity=0.211  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          189 AIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      .+...+++++++.+++|+++.+.+-.+ .-+.-+.+.+.+++++||+++..+++|..+++.|++......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            366778899999999999999988777 468899999999999999999999999999999999986544

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=98.29  E-value=2.2e-05  Score=58.20  Aligned_cols=69  Identities=16%  Similarity=0.218  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          189 AIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      .++...++++++..++|+++.+.+-.+ .-+.-+.+.+.+++++||+++..+++|..+++.|+++.+..+
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            367778899999999999999988766 568889999999999999999999999999999999986543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.28  E-value=2.6e-05  Score=66.05  Aligned_cols=234  Identities=14%  Similarity=0.104  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHHHHHH-HHHHhhhcC---------------CCCCcCHHHHHHHH
Q 023321            9 VGMITLGKAAMS---SGM----SNFVYVVYYNALGTFILLH-YFIYNTYRS---------------KGPVLTFSLLCKFF   65 (284)
Q Consensus         9 g~~~~~~k~~~~---~~~----~p~~~~~~R~~~a~l~l~~-~~~~~~~~~---------------~~~~~~~~~~~~~~   65 (284)
                      +.+-+.+|++-+   .+-    +|+..+...|+.=++++.. .++|  .+.               +++++++....   
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir--~~sn~~g~~s~~~~ilsq~~~pf~p~lfl---   90 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR--LRSNGQGVSSDLDSILSQDSSPFNPVLFL---   90 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCcccccccccccccCCCCcceec---
Confidence            455667777632   122    3777777777777777777 4444  111               11233332222   


Q ss_pred             HHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCC
Q 023321           66 MLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPP  145 (284)
Q Consensus        66 ~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~  145 (284)
                      .=+++. .....++|.|+.+++++.-.++-...-+|+.+++.-+++.++..+      +|+|+....+|+..+...+-..
T Consensus        91 ~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~  163 (372)
T KOG3912|consen   91 PPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL  163 (372)
T ss_pred             ChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc
Confidence            233443 455688999999999999999999999999999999999999999      9999999999998885332111


Q ss_pred             CCCC--CCCCCCCCCcc---------------------chhhh------hHHHHHHHHHHHHhh--h------------h
Q 023321          146 LLGF--SSPSNSNIQLP---------------------VSEYS------NWALGGLLLTVTCFS--S------------A  182 (284)
Q Consensus       146 ~~~~--~~~~~~~~~~~---------------------~~~~~------~~~~g~~~~~~~~~~--~------------~  182 (284)
                      ....  .......|+..                     +...+      .-.+|...+-.....  +            +
T Consensus       164 ~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g  243 (372)
T KOG3912|consen  164 VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRG  243 (372)
T ss_pred             ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCc
Confidence            1110  01112223220                     00111      113332221111110  0            0


Q ss_pred             -------HHH-------HHHHHHHHHHHHHHHHHH----HhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHH
Q 023321          183 -------TWK-------IFQAIVGTVIRSSIIAWC----LQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTV  244 (284)
Q Consensus       183 -------~~~-------~~~~~~~~~l~~~~~~~~----l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~  244 (284)
                             .+.       +........++-.+|+.+    -|..+++.=.++..+...+-=+++.....|.++..|+.|.+
T Consensus       244 ~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFl  323 (372)
T KOG3912|consen  244 VLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFL  323 (372)
T ss_pred             chhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence                   000       111233334444444432    36667777778888888888888888889999999999999


Q ss_pred             HHHHHHHHhh
Q 023321          245 VIAFGFYAVI  254 (284)
Q Consensus       245 li~~g~~l~~  254 (284)
                      +.+.|+++++
T Consensus       324 iLi~Gi~lY~  333 (372)
T KOG3912|consen  324 ILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.27  E-value=1.4e-05  Score=66.69  Aligned_cols=124  Identities=17%  Similarity=0.090  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      +.+..||+...+..|..-. ..+-..-+..-+.+++++.+| -...    ......+++....-+..|+++..+.|.+-.
T Consensus       154 l~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~----ag~~l~~p~ll~laLgvavlSSalPYsLEm  228 (292)
T COG5006         154 LGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ----AGPALFSPSLLPLALGVAVLSSALPYSLEM  228 (292)
T ss_pred             HHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh----cchhhcChHHHHHHHHHHHHhcccchHHHH
Confidence            3578899999999999874 455556666778999999998 4322    112334556677778889999999999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhh
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF  136 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  136 (284)
                      .+++..|...-+++.++.|.+.++.++++++|+++..      ||.++...+++.+
T Consensus       229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa  278 (292)
T COG5006         229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA  278 (292)
T ss_pred             HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999      9999998887775

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.26  E-value=4.4e-06  Score=67.07  Aligned_cols=177  Identities=17%  Similarity=0.212  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCC
Q 023321           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP  152 (284)
Q Consensus        73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  152 (284)
                      .+.+..|..+++..++++++-+..+...|+.+++++.+|+|+..-      ++++.++++.|+..+...++.-.+.+  .
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN~~a~e~--i  135 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADNEHADEI--I  135 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccchhhhhh--h
Confidence            677889999999999999999999999999999999999999998      99999999999988864333322221  1


Q ss_pred             CC--CCCCc----cch-------------hhhhH--HHHHHHHHHHHh----------------hhhHHHHHHHHHHHHH
Q 023321          153 SN--SNIQL----PVS-------------EYSNW--ALGGLLLTVTCF----------------SSATWKIFQAIVGTVI  195 (284)
Q Consensus       153 ~~--~~~~~----~~~-------------~~~~~--~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~l  195 (284)
                      |+  ..++.    .|.             +...+  .+|..=+....+                .+..|-...+.-.-.+
T Consensus       136 Gi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~l  215 (290)
T KOG4314|consen  136 GIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSL  215 (290)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHH
Confidence            11  01110    000             00000  011100000000                0001111111111122


Q ss_pred             HH-HHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          196 RS-SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       196 ~~-~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      ++ .+.+.++....|-..++-+....+.....+.++-+-..+...+.|..+++.|.++.....
T Consensus       216 AFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  216 AFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             HHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            22 455677888888888888888888888999776565677788899999999999887543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.17  E-value=1.1e-05  Score=61.68  Aligned_cols=70  Identities=20%  Similarity=0.408  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHH--HhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVF--FRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ....|+.++.+.+.++.++++..|++.+..+.+..+.++.+.++.  ++||+++.+      +++|+.+.++|+.++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            467888888999999999999999999999999999888888885  799999999      9999999999998875

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.00011  Score=62.11  Aligned_cols=191  Identities=8%  Similarity=0.150  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           61 LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        61 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      |+.+.+++.+. ...+.+..-++.|.+=..-.+.-.+--+=+++.+.++.+.|-++.      ..++..+..+|.+++++
T Consensus       106 ~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTL  178 (367)
T KOG1582|consen  106 WRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTL  178 (367)
T ss_pred             hhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhh
Confidence            45556666664 667778888888887555555555555556677888888888888      99999999999999987


Q ss_pred             ccCCCCCCCCCCCCC--C---------CCc------------cchhhhhHHHHHHHHHHHHhh----hhHHH--------
Q 023321          141 YKGPPLLGFSSPSNS--N---------IQL------------PVSEYSNWALGGLLLTVTCFS----SATWK--------  185 (284)
Q Consensus       141 ~~~~~~~~~~~~~~~--~---------~~~------------~~~~~~~~~~g~~~~~~~~~~----~~~~~--------  185 (284)
                      .+...+-.++..|..  .         |+.            ......++.+|..+++...+.    +..|.        
T Consensus       179 ADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~  258 (367)
T KOG1582|consen  179 ADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVR  258 (367)
T ss_pred             cccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHh
Confidence            665544333322210  0         110            001123445555555443321    11111        


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          186 ----IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       186 ----~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                          .+.--..+.+|...-..-++..|+..++.+....-.+++++++++|..+++.....|..++..|+++-.+.++
T Consensus       259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence                1111334455555556667888999999999999999999999999999999999999999999999877663

>TIGR00803 nst UDP-galactose transporter

Probab=98.04  E-value=1.7e-05  Score=66.62  Aligned_cols=63  Identities=8%  Similarity=0.082  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  252 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l  252 (284)
                      ++...++..+..+.+|+.++...+.....+++++.+++++++||+++..+++|..+++.|+++
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            566777888899999999999999999999999999999999999999999999999988765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.96  E-value=0.00021  Score=52.06  Aligned_cols=67  Identities=21%  Similarity=0.328  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCccch-hhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~-~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      ++...++|.+...++|+++.+.+ ++..-+..+.+.+.|+++|||+++..+++|..+++.|++..+..
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            67778899999999999998865 56677888999999999999999999999999999999988754

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.00011  Score=63.49  Aligned_cols=187  Identities=19%  Similarity=0.289  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccC
Q 023321           64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKG  143 (284)
Q Consensus        64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~  143 (284)
                      .+..|++.+.......|.|+.+.|++..+.+..++-+..++++..++|||++..      ..+|+.++++|-.+++. ..
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-ha  138 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HA  138 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ec
Confidence            345788888999999999999999999999999999999999999999999999      99999999999988863 33


Q ss_pred             CCCCCCCCC-CC--CCCCc---cc---------------h--hhhhH--HHHHHHHHHHHh-------------------
Q 023321          144 PPLLGFSSP-SN--SNIQL---PV---------------S--EYSNW--ALGGLLLTVTCF-------------------  179 (284)
Q Consensus       144 ~~~~~~~~~-~~--~~~~~---~~---------------~--~~~~~--~~g~~~~~~~~~-------------------  179 (284)
                      +........ ..  ...+.   .|               .  .....  ..-.++.+.+.+                   
T Consensus       139 P~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~  218 (335)
T KOG2922|consen  139 PKEQEIESVEEVWELATEPGFLVYVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN  218 (335)
T ss_pred             CcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence            332211100 00  00000   00               0  00000  000000011000                   


Q ss_pred             ---hhh-HHHHHHHHHHHHHHHH--HHHHHHhhcCccchhhhhchH-HHHHHHHHHHHhCCC--Cch----hhHHHHHHH
Q 023321          180 ---SSA-TWKIFQAIVGTVIRSS--IIAWCLQKKGPVFVALFKPLG-TAIAVFMAVMFLGET--PHL----GSLIGTVVI  246 (284)
Q Consensus       180 ---~~~-~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~~~~~l~-pv~a~i~~~~~~gE~--~~~----~~~~G~~li  246 (284)
                         .++ .|.... .+.+...+.  -.+++++..+++.++++.|.. ..++++.+.+++.|-  .+.    ....|...+
T Consensus       219 ~ql~~~~ty~~~l-~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti  297 (335)
T KOG2922|consen  219 NQLFYPLTWIFLL-VVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTI  297 (335)
T ss_pred             cccccHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHh
Confidence               011 122222 333333333  346899999999888887754 566777788888874  333    345688889


Q ss_pred             HHHHHHhhcccc
Q 023321          247 AFGFYAVIWAQG  258 (284)
Q Consensus       247 ~~g~~l~~~~~~  258 (284)
                      +.|+.++...|.
T Consensus       298 ~~G~flL~~~kd  309 (335)
T KOG2922|consen  298 FLGIFLLHRTKD  309 (335)
T ss_pred             hheeeEeeeecc
Confidence            999999865443

>TIGR00688 rarD rarD protein

Probab=97.91  E-value=3.6e-05  Score=66.12  Aligned_cols=62  Identities=16%  Similarity=0.235  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321          193 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  254 (284)
Q Consensus       193 ~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~  254 (284)
                      ....+.+|++++++.+++.++.+.+..|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.89  E-value=6.8e-05  Score=55.51  Aligned_cols=111  Identities=18%  Similarity=0.061  Sum_probs=79.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      |++++++||...++.|.+.. +.++..-.. |..-....++    +             .+.+  ...+.-.-.....|+
T Consensus         1 ~l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~Ll----~-------------n~~y--~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    1 LLLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFLL----L-------------NPKY--IIPFLLNQSGSVLFF   59 (113)
T ss_pred             CeeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHHH----H-------------hHHH--HHHHHHHHHHHHHHH
Confidence            57789999999999999985 555444331 3222221111    1             1121  223333466778899


Q ss_pred             HHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           81 TGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        81 ~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      +.+...+.+.+..+. ++.=+++++.++++.+|..+++      .++|+.+.++|+.+.
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            999999999999885 7888889999988877777777      899999999999764

Many members are annotated as potential transmembrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.85  E-value=0.0004  Score=50.99  Aligned_cols=66  Identities=15%  Similarity=0.365  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchh-hhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVA-LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  255 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~-~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~  255 (284)
                      ++...++|++...++|+++.+.+- +..-+.-+.+.+.|++++||++++.+++|..+++.|++..+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            666788999999999999988764 455588899999999999999999999999999999998754

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.82  E-value=0.0052  Score=54.78  Aligned_cols=248  Identities=15%  Similarity=0.061  Sum_probs=140.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHH--HHHH-hhhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLH--YFIY-NTYRSKGPVLTFSLLCKFFMLGVLGICLVQI   77 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~l~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   77 (284)
                      ++++++||+.++-.|. . ++.+=..+ +. -..++.++.-.  .... +.......+.+.+.+..-++.|++ .+..+.
T Consensus        13 ~i~~~~~GS~~~p~K~-~-k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~-W~iG~i   88 (345)
T PRK13499         13 LIGGASSGSFYAPFKK-V-KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL-WGIGGI   88 (345)
T ss_pred             HHHHHHhhcccccccc-c-CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH-HHhhhh
Confidence            5688999999999999 3 34552222 11 11111111110  0110 000011123456677777888888 499999


Q ss_pred             HHHHHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcc---cccccccchhhHHHHHHhhhhhhhhc----ccCCCCCC-
Q 023321           78 FAITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKV---AIRSRSSQAKILGTVVSIAGAFIVSL----YKGPPLLG-  148 (284)
Q Consensus        78 ~~~~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~---~~~~~~~~~~~~g~~l~~~Gv~li~~----~~~~~~~~-  148 (284)
                      .++.++++...+.+..+. .++-+...++..++++|-.   +..  -...-.+|+++.++|+.+...    .+.+.... 
T Consensus        89 ~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~  166 (345)
T PRK13499         89 TYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKK  166 (345)
T ss_pred             hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            999999999999998665 5999999999999988765   221  112267888999999988864    22111100 


Q ss_pred             CCCCCCCC---------------------CCc------------cchhhhhHH---HHHHHHHH-HHh-------h----
Q 023321          149 FSSPSNSN---------------------IQL------------PVSEYSNWA---LGGLLLTV-TCF-------S----  180 (284)
Q Consensus       149 ~~~~~~~~---------------------~~~------------~~~~~~~~~---~g~~~~~~-~~~-------~----  180 (284)
                      ....+...                     +..            .+...+.+.   .|.+..-. -+.       .    
T Consensus       167 ~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~  246 (345)
T PRK13499        167 AEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK  246 (345)
T ss_pred             ccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence            00000000                     000            011111221   22221110 000       0    


Q ss_pred             -h-hH-----HHH----HHHHHHHHHHHHHHHHHHhhcCccchhh---hh-chHHHHHHHHHHHHhCCCCc------hhh
Q 023321          181 -S-AT-----WKI----FQAIVGTVIRSSIIAWCLQKKGPVFVAL---FK-PLGTAIAVFMAVMFLGETPH------LGS  239 (284)
Q Consensus       181 -~-~~-----~~~----~~~~~~~~l~~~~~~~~l~~~~~~~~~~---~~-~l~pv~a~i~~~~~~gE~~~------~~~  239 (284)
                       . ..     +.-    ...++.-.+++..|..+-++.+......   +. .+..+++.++|. ++||.=+      ...
T Consensus       247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l  325 (345)
T PRK13499        247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVL  325 (345)
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHH
Confidence             0 00     111    1123444556677778778886654444   44 777799999998 5999755      566


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 023321          240 LIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       240 ~~G~~li~~g~~l~~~~  256 (284)
                      ++|.++++.|..+....
T Consensus       326 ~~G~vliI~g~~lig~~  342 (345)
T PRK13499        326 SLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            88999999999887654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.81  E-value=0.00058  Score=50.47  Aligned_cols=65  Identities=14%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchh-hhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVA-LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI  254 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~-~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~  254 (284)
                      +....++|++...++|+++.+.+- +..-+.-+.+.+.+++++||+++..+++|..+++.|++..+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            666778999999999999988764 44558888999999999999999999999999999999864

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.79  E-value=0.00034  Score=62.14  Aligned_cols=129  Identities=17%  Similarity=0.057  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC--CcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP--VLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      +++++++|...+.-+.... +.|+.++..+--+++.++..+ ....  +++...  +.+.+... +.+...++....+.+
T Consensus       174 l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~il--e~~~i~~~~w~~~~~~-~~v~~~~~lf~~y~l  249 (334)
T PF06027_consen  174 LLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAIL--ERSGIESIHWTSQVIG-LLVGYALCLFLFYSL  249 (334)
T ss_pred             HHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHhe--ehhhhhccCCChhhHH-HHHHHHHHHHHHHHH
Confidence            6789999999999999985 789999998888899998888 5554  444332  23333333 333344455777778


Q ss_pred             HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      .-..++++++....+=.-+..+++++++.+++|+++++.      .++|.++.++|..+...
T Consensus       250 ~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  250 VPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            888889998887777778899999999999999999999      99999999999988753

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.66  E-value=5.9e-05  Score=63.52  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      ++-...|..+.+|++++.+-+.+.++....|+++.+++|.+++|+.+....+|..+.+.|+++..+..
T Consensus       104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            56667788889999999999999999999999999999999999999999999999999999998543

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=4.4e-05  Score=64.44  Aligned_cols=233  Identities=16%  Similarity=0.067  Sum_probs=138.1

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHH-H-hhhcCCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhh
Q 023321           24 SNFVYVVYYNALGTFILLH-YFI-Y-NTYRSKGP--VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLI   98 (284)
Q Consensus        24 ~p~~~~~~R~~~a~l~l~~-~~~-~-~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~   98 (284)
                      .|..+++++-+....+-.. ... + .+.+...|  +++.+..+.+.-+.+.. .+...+..+.++|.+++---+--++.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence            3788888887777555444 222 1 00111112  23333444445555542 55566778888888888777777888


Q ss_pred             HHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCc----------------cch
Q 023321           99 PGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL----------------PVS  162 (284)
Q Consensus        99 Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~----------------~~~  162 (284)
                      -+|++++.++++|+|-+..      -..++.+.+.|..+-+ ..++..+..+..|...|-.                ...
T Consensus       139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv-dqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v  211 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV-DQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV  211 (347)
T ss_pred             hhHHHHhHHhhcccccccc------cceeehhheehheecc-ccccccCccchhhhHHHHHHHHHHHHHHHhhheecccc
Confidence            9999999999999998887      7777777777765443 2222222233223221100                001


Q ss_pred             hhhhHHH-------HHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHH---HHHhhcCccchhhhhchH
Q 023321          163 EYSNWAL-------GGLLLTVTCFS-------------SATWKIFQAIVGTVIRSSIIA---WCLQKKGPVFVALFKPLG  219 (284)
Q Consensus       163 ~~~~~~~-------g~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~~~~~~l~  219 (284)
                      .+..|.+       ..++.+.....             ++.+.-..-.+++..+|.+-+   +=+|-.+|..-.+-....
T Consensus       212 ~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAk  291 (347)
T KOG1442|consen  212 GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAK  291 (347)
T ss_pred             cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHH
Confidence            1111211       11111111100             011111111333344443332   225778888888888888


Q ss_pred             HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccccccc
Q 023321          220 TAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT  264 (284)
Q Consensus       220 pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~~~  264 (284)
                      -..-.++++.+++|.-+..-|.|-++++.|-.++++.|+.|++++
T Consensus       292 a~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  292 AAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            888999999999999999999999999999999998777665554

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.64  E-value=0.00052  Score=49.37  Aligned_cols=57  Identities=23%  Similarity=0.327  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVI  246 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li  246 (284)
                      +..-.+++.++.+++|+++.+.+-.+ .-+..+...+.|.+++||++|..++.|..+|
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            55778899999999999999998554 5689999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.62  E-value=4.5e-06  Score=69.23  Aligned_cols=242  Identities=17%  Similarity=0.167  Sum_probs=148.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT   81 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   81 (284)
                      ++.++.||+...+.-..   +=.|.+-...-.+.+.++-+..++.     ..|..+.+.+..-++-|++ ....+..-+.
T Consensus         8 L~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-----~~p~~T~~~~iv~~isG~~-Ws~GQ~~Qfk   78 (288)
T COG4975           8 LLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-----VSPELTLTIFIVGFISGAF-WSFGQANQFK   78 (288)
T ss_pred             HHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-----ecCccchhhHHHHHHhhhH-hhhhhhhhhh
Confidence            35678999988776553   4556665555444444444433321     1345565566666666766 5889999999


Q ss_pred             HhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCC-CCCC--
Q 023321           82 GIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS-NSNI--  157 (284)
Q Consensus        82 al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~-~~~~--  157 (284)
                      |+++.+++.+..+.. ++-+-+.+++++.++|..+..|.  -...+++++.++|+.+-. .+.+.+...+... ...+  
T Consensus        79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs-~~~~~nk~~~~~~n~kkgi~  155 (288)
T COG4975          79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTS-KQDRNNKEEENPSNLKKGIV  155 (288)
T ss_pred             heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEee-eeccccccccChHhhhhhee
Confidence            999999999998775 88888899999999998776620  001234556666765553 2222211111111 1111  


Q ss_pred             -----Cc---cchhh------------hhHHHHHHHHHHHH-hhh-------hHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 023321          158 -----QL---PVSEY------------SNWALGGLLLTVTC-FSS-------ATWKIFQAIVGTVIRSSIIAWCLQKKGP  209 (284)
Q Consensus       158 -----~~---~~~~~------------~~~~~g~~~~~~~~-~~~-------~~~~~~~~~~~~~l~~~~~~~~l~~~~~  209 (284)
                           +.   .|...            -....|.+.-.+.. ..-       -.|.-...++.-..+-..+..+.++.|.
T Consensus       156 ~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~Gv  235 (288)
T COG4975         156 ILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGV  235 (288)
T ss_pred             eeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhce
Confidence                 00   11100            11122322111110 000       0122222355567788888999999999


Q ss_pred             cchhhhhchHHHHHHHHHHHHhCCCCchhh----HHHHHHHHHHHHHhhc
Q 023321          210 VFVALFKPLGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVIW  255 (284)
Q Consensus       210 ~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~----~~G~~li~~g~~l~~~  255 (284)
                      +..=.++-+..+.+.+-|.++++|+=+..+    ++|.++++.|..+...
T Consensus       236 At~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         236 ATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             eeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            988888889999999999999999988655    5688888888777654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.59  E-value=0.00013  Score=59.87  Aligned_cols=178  Identities=12%  Similarity=0.093  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCC
Q 023321           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP  152 (284)
Q Consensus        73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~  152 (284)
                      ......--.+++|.+...-++.-++..+..+.....++|.|++..      +..+.++.+..-..-...+..... ....
T Consensus        79 v~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~~~-~~~~  151 (309)
T COG5070          79 VVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQASA-FKAQ  151 (309)
T ss_pred             HHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhHHH-HHhc
Confidence            344455668899999999999999999999999999999999988      888888777776554322211100 0000


Q ss_pred             CCCCCCc---------------------c------chhhhhHHHHHHHHHHHHhhhhH----------------HHHHHH
Q 023321          153 SNSNIQL---------------------P------VSEYSNWALGGLLLTVTCFSSAT----------------WKIFQA  189 (284)
Q Consensus       153 ~~~~~~~---------------------~------~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~  189 (284)
                      .+..|..                     .      .....+..+..-.++...+...-                +..+. 
T Consensus       152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~IS-  230 (309)
T COG5070         152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFIS-  230 (309)
T ss_pred             ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHH-
Confidence            0111100                     0      00011222222222222222111                12222 


Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      .+++.--.+|-.+.++-.+.+.-+.++.++-.-..+.|.+++||+.+...+....+=..+-.++...+.
T Consensus       231 gl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks  299 (309)
T COG5070         231 GLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKS  299 (309)
T ss_pred             HHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222333335666788999999999999999999999999999999999888887776665555554443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.47  E-value=0.00061  Score=51.27  Aligned_cols=68  Identities=24%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           66 MLGVLGICLVQIFAITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        66 ~~g~~~~~~~~~~~~~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +..+.+++..+.++..++++.|.+.+-.+- ..--+.+++.+++++||+++..      +++|+.+.++|++.+-
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            344555688999999999999999988664 6889999999999999999999      9999999999998874

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.45  E-value=0.00082  Score=49.85  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           67 LGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        67 ~g~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ..+.++.+.+.++..+++..|.+.+--+ ...--+.+.+.+++++||++++.      +++|+.+.++|++.+-
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            4455678889999999999999988866 55888899999999999999999      9999999999998884

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.45  E-value=0.00049  Score=60.49  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      .+...++..+...++...+++.++++..+.-+++.+++..++||+++..++.|..+++.|..+...-.
T Consensus        57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            55567788888899999999999999999999999999999999999999999999999998876433

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.41  E-value=0.0043  Score=45.83  Aligned_cols=64  Identities=14%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHhccccHhHHHH-HhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           69 VLGICLVQIFAITGIKYSSPTLASA-MGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        69 ~~~~~~~~~~~~~al~~~~~~~a~i-l~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      +.++...+.+...++++.|.+.+-- -...--+.+.+.+++++||++++.      |++|+.+.+.|+..+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            4446788999999999999998875 445888899999999999999999      999999999999775

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.0011  Score=48.33  Aligned_cols=67  Identities=21%  Similarity=0.195  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccccHhHHH-HHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           66 MLGVLGICLVQIFAITGIKYSSPTLAS-AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        66 ~~g~~~~~~~~~~~~~al~~~~~~~a~-il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      +..+.++...+.+.-.++++.|.+.+- +-...-.+.+.+.+++++||+.+..      +++|+.+.++|++.+
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L  101 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence            334445688899999999999998886 5556888999999999999999999      999999999999876

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.35  E-value=0.011  Score=50.85  Aligned_cols=125  Identities=14%  Similarity=0.038  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC--CCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321            3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK--GPVLTFSLLCKFFMLGVLGICLVQIFA   79 (284)
Q Consensus         3 ~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~   79 (284)
                      ..++.||..+..=|..   ++|+.+=.+.-.+.-.+.-+. .+..  ....  ..+-+.+.+..+...|... +.+-.+|
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l--~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf  228 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFL--ADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF  228 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHH--hcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence            3466777777766653   477776666665555554444 3322  2221  1113456778888899986 9999999


Q ss_pred             HHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        80 ~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ..|-+++|.+...+++|..|....+++.++++|+++..      +..+.+..-+|+++..
T Consensus       229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999      9999999888988775

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.30  E-value=0.0013  Score=51.54  Aligned_cols=63  Identities=14%  Similarity=0.289  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321          193 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  255 (284)
Q Consensus       193 ~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~  255 (284)
                      ..+-....+..+++.+|...++...+..+...+.+++++||+++..++.|.++.+.|.+++++
T Consensus        91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            334456667789999999999999999999999999999999999999999999999988753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.26  E-value=0.0062  Score=53.68  Aligned_cols=130  Identities=21%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH-HHH--HhhhcCCC---CCcCHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMS-SGMSNFVYVVYYNALGTFILLH-YFI--YNTYRSKG---PVLTFSLLCKFFMLGVLGICL   74 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~-~~~--~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~   74 (284)
                      +++.++=|...+..+...+ .+.++.+..++-.+++.++..+ ...  . ++-.+.   ....+..+..++...+.+ ..
T Consensus       160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~-~~~~~~~~f~~~~p~~~~~l~~~s~~~-~~  237 (303)
T PF08449_consen  160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPT-GEFRSAIRFISAHPSVLLYLLLFSLTG-AL  237 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhHHHHHHHHhHHHHHHHHHHHHHH-HH
Confidence            4556677888888888774 4789999999999999998887 544  2 011110   111223345555555554 66


Q ss_pred             HHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           75 VQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        75 ~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ...+.+.-.+..++-..+++..+--+++.+++.++++++++..      +|.|+.+.+.|..+-.
T Consensus       238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            6677777889999999999999999999999999999999999      9999999999997764

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.19  E-value=0.0017  Score=55.40  Aligned_cols=67  Identities=10%  Similarity=0.149  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccc
Q 023321          193 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK  259 (284)
Q Consensus       193 ~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~  259 (284)
                      -.+...+.+.++++.+|+.-.++.....+++++++++++|.+++..||++..+...|+.+.......
T Consensus        27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            3445577889999999999999999999999999999999999999999999999999988765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.17  E-value=0.0028  Score=46.55  Aligned_cols=64  Identities=13%  Similarity=0.066  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           69 VLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        69 ~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      +.++...+.+...+++..|.+.+--+ ...--+.+.+.+++++||++++.      +++|+.+.++|+..+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            44568889999999999999888754 45888999999999999999999      999999999999876

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.13  E-value=0.014  Score=45.21  Aligned_cols=121  Identities=18%  Similarity=0.169  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023321            6 IGEVGMITLGKAAMSSGM-SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI   83 (284)
Q Consensus         6 ~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al   83 (284)
                      .+-+....+.-..-+ .. +|...++.-+..+.+.+.. ....  +++.....++ .-++...-|++| .....+..+..
T Consensus        11 ~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~--~~~~~~~~~~-~p~w~~lGG~lG-~~~V~~~~~~v   85 (138)
T PF04657_consen   11 ALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLIT--GRPSLASLSS-VPWWAYLGGLLG-VFFVLSNIILV   85 (138)
T ss_pred             HHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHh--cccccchhcc-CChHHhccHHHH-HHHHHHHHHHh
Confidence            333444444444443 34 4999999999999999887 5554  3322222222 224445578887 88888999999


Q ss_pred             ccccHhHHHHH-hhhhHHHHHHHHHH----HhhhcccccccccchhhHHHHHHhhhhhh
Q 023321           84 KYSSPTLASAM-GNLIPGITFLLAVF----FRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (284)
Q Consensus        84 ~~~~~~~a~il-~~~~Pi~~~lla~~----~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  137 (284)
                      +..+++.+..+ ..-+-+...++..+    .-|++++.+      |.+|+.+.++|+.+
T Consensus        86 p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   86 PRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            99988877754 45777777787775    345667777      99999999999853

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.86  E-value=0.0049  Score=44.31  Aligned_cols=57  Identities=28%  Similarity=0.250  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHH
Q 023321           68 GVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVV  130 (284)
Q Consensus        68 g~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l  130 (284)
                      .+.+++..+.++..++++.|.+.+-.+ ...-.+.+.+.+..++||+++..      |+.|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            344568889999999999999999654 56999999999999999999999      9999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.80  E-value=0.011  Score=50.89  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI   80 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   80 (284)
                      ++..+.+....++.|..   +++|.+..+=. .++.++-.. ....  .  +++ ...|..++-.+.|++ ....+.+++
T Consensus       144 l~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~--~--~~~-~~~k~~~~nil~G~~-w~ignl~~~  213 (269)
T PF06800_consen  144 LISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF--S--KKP-FFEKKSWKNILTGLI-WGIGNLFYL  213 (269)
T ss_pred             HHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc--c--ccc-ccccchHHhhHHHHH-HHHHHHHHH
Confidence            45566666666776652   57887776644 333333222 2111  1  112 222334555777887 489999999


Q ss_pred             HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhh
Q 023321           81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGA  135 (284)
Q Consensus        81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv  135 (284)
                      .|.+....+.+-.+.++..+.+.+.+.+++||+=++|  .-...++|+++.++|.
T Consensus       214 is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k--e~~~~~~G~~Liv~G~  266 (269)
T PF06800_consen  214 ISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK--EMIYTLIGLILIVIGA  266 (269)
T ss_pred             HhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh--hHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999996655  2222334444444444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.02  E-value=0.021  Score=42.41  Aligned_cols=64  Identities=11%  Similarity=0.063  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccchhhhh-chHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 023321          189 AIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA  252 (284)
Q Consensus       189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~-~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l  252 (284)
                      .......|...|++.+.+.+.+.+.++. .+.=+++++.++++.+|..+...++|+++++.|+.+
T Consensus        47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            3555677889999999999999999995 888899999997766666778889999999999865

Many members are annotated as potential transmembrane proteins.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=95.08  E-value=0.15  Score=45.49  Aligned_cols=133  Identities=11%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-CCCcCHHHHHHHHHHHHHHHHHHH
Q 023321            2 ALVEIGEVGMITLGKAAMSS---GMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-GPVLTFSLLCKFFMLGVLGICLVQ   76 (284)
Q Consensus         2 ~~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~   76 (284)
                      ++.++++|...++.|.=.++   .++-..+-.+--++..++++| .++.+..+.+ ..-.+..+...+++.++++.....
T Consensus       253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD  332 (416)
T KOG2765|consen  253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD  332 (416)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence            35678899999999887653   255555555557777888887 5544111111 122233456677888999999999


Q ss_pred             HHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        77 ~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      .+|.+|.-.+++-.+++=+..+....++...++.+.++++.      .++|.+..++|..++..
T Consensus       333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence            99999999999999999888777778888888855556655      99999999999988753

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.65  E-value=0.074  Score=46.93  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH-H-HHHHhhhcCCC-----CCcCHHHHHHHHHHHHHHHH
Q 023321            4 VEIGEVGMITLGKAAMS---SGMSNFVYVVYYNALGTFILL-H-YFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGIC   73 (284)
Q Consensus         4 ~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~l~l~-~-~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~   73 (284)
                      +.+..+.-.++.|..+.   ..+++.....+..-.+.++++ | ....  ++...     ...+.+ ........++. .
T Consensus       171 s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~sv~~-f  246 (316)
T KOG1441|consen  171 SNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV--EGNKFVGFLTAPWFVT-FLILLLNSVLA-F  246 (316)
T ss_pred             HHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh--cccceeeeeccccchh-hHHHHHHHHHH-H
Confidence            44556677788888873   358999999999999999999 7 4433  22211     012222 23333344443 6


Q ss_pred             HHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           74 LVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        74 ~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      ..+...|..+.++++-+-.+....==.++.+.++++++|+++..      +..|..++++|+.+-.
T Consensus       247 ~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  247 LLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            77888899999999988888887777777888989999999999      9999999999998764

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.47  E-value=0.034  Score=45.12  Aligned_cols=64  Identities=13%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321          195 IRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG  258 (284)
Q Consensus       195 l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~  258 (284)
                      .+.+.|..++++++++.++.+..-.-.+..+++++.+|+++....++..++.+.|+++..+.++
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            3467899999999999999999999999999999999999999999999999999998876543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.46  E-value=0.15  Score=45.09  Aligned_cols=63  Identities=11%  Similarity=0.032  Sum_probs=57.0

Q ss_pred             HHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          198 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       198 ~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      -+++.++.+.+++...+...+....++++.+++++++++..||...++...|+.+......++
T Consensus       107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~  169 (345)
T KOG2234|consen  107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP  169 (345)
T ss_pred             hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence            378889999999999999999999999999999999999999999999999999988444433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.15  E-value=1.7  Score=38.99  Aligned_cols=74  Identities=23%  Similarity=0.161  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccHhHHHH---Hh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           65 FMLGVLGICLVQIFAITGIKYSSPTLASA---MG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        65 ~~~g~~~~~~~~~~~~~al~~~~~~~a~i---l~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      .+.|++ ....+.++..|-+..+.+.+.+   +. .+.-++..+-+. ++||+=+..||+.+.-++|+++.++|..++.+
T Consensus       264 ~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~  341 (345)
T PRK13499        264 ALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL  341 (345)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence            444444 5777888888888876554444   55 555566666666 59999776678888899999999999988753

>TIGR00803 nst UDP-galactose transporter

Probab=94.13  E-value=0.3  Score=40.80  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhh
Q 023321           73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI  137 (284)
Q Consensus        73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  137 (284)
                      +....+..+.+++.++..-++...+.++++.+++.++++|+++..      ++.|..+.+.|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence            666778999999999999999999999999999999999999999      99999999988743

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.83  E-value=1.7  Score=33.92  Aligned_cols=109  Identities=17%  Similarity=0.115  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHH-HHhhhhHHH
Q 023321           24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLAS-AMGNLIPGI  101 (284)
Q Consensus        24 ~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~-il~~~~Pi~  101 (284)
                      +|....+.-+..+.+++.. .+.+  +++.......+.-++.++-|++| ..+-...........++... ++..-+-+.
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~--~~~~~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~  109 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIK--QGHPGLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIM  109 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHh--cCCCchhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence            5999999999999888887 5554  33332222233345667777776 66666667777777665544 455677777


Q ss_pred             HHHHHHHH-hhhcccccccccchhhHHHHHHhhhhhhh
Q 023321          102 TFLLAVFF-RMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus       102 ~~lla~~~-~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      .+++..+= +++   .+|+++..+++|+++.++|+.++
T Consensus       110 glliD~fG~~g~---~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         110 GLLIDHFGWFGV---PKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHHHHhhcccCC---CcCCCCHHHHHHHHHHHHHHHHh
Confidence            77776542 222   12344555999999999995554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.19  E-value=0.026  Score=49.14  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321          187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE  260 (284)
Q Consensus       187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~  260 (284)
                      +.+.+...+|-...+-+....+++.+++++.+..+.+++++..+++|+++....+|+++.++|-.+...-.+++
T Consensus        68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            34456667777777777888899999999999999999999999999999999999999999888876544443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.82  E-value=0.2  Score=41.88  Aligned_cols=108  Identities=18%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhH
Q 023321           24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKG---PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIP   99 (284)
Q Consensus        24 ~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~P   99 (284)
                      +-..+.+.-.+.+.+.+.. ..+. ++-.+.   ....+..++.+..+++.+ ++.+.+.|.-+.+-++-.-+++..+--
T Consensus       201 ~g~~MM~~~NlwStL~Lg~g~lfT-GElweF~yF~~RhP~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRK  278 (337)
T KOG1580|consen  201 TGTSMMFYTNLWSTLYLGAGLLFT-GELWEFFYFVQRHPYVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRK  278 (337)
T ss_pred             CchhhHHHHHHHHHHHhhhhheeh-hhHHHHHHHHHhccHHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHH
Confidence            3455666667777777665 4432 011000   111234567777788776 888999999999999988999999999


Q ss_pred             HHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321          100 GITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus       100 i~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +|+++.+.++++.+++.|      ||+|..+.|.|...=.
T Consensus       279 fFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  279 FFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            999999999999999999      9999999999886543

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.02  E-value=0.78  Score=39.90  Aligned_cols=109  Identities=12%  Similarity=0.133  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhh
Q 023321           22 GMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN   96 (284)
Q Consensus        22 ~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~   96 (284)
                      .+++.++.+.-.+...+.-....+.  .+...     -...++-++.+++....+ +..+.+.|+-++.-++-.-+.++-
T Consensus       199 k~s~~~mM~~vNLf~~i~~~~~li~--qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  199 KVSSLHMMFGVNLFSAILNGTYLIL--QGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             CccHhHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHH
Confidence            5889999998888888776652222  11111     122344456666666666 777899999999988888889999


Q ss_pred             hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        97 ~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      +-=++++.++.+.++.++++.      +|.|+.+.|.|..+=.
T Consensus       276 tRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence            999999999999999999999      9999999998886543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=91.71  E-value=13  Score=35.60  Aligned_cols=43  Identities=7%  Similarity=-0.056  Sum_probs=21.9

Q ss_pred             chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh
Q 023321          211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV  253 (284)
Q Consensus       211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~  253 (284)
                      .........|+-+.++|.+.-.-..+....++++.++.+..+.
T Consensus       348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            3344555677777777766433333333344444444444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK02237 hypothetical protein; Provisional

Probab=91.68  E-value=1.6  Score=31.86  Aligned_cols=68  Identities=15%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHhhcC---cc-chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          190 IVGTVIRSSIIAWCLQKKG---PV-FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~---~~-~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      ++...++-.+|.......+   .. .-+...-.-.+.++++++..-|++|+..+++|..+.+.|+.+..+..
T Consensus        36 ~~pg~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         36 LLPGALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            4445555555555555444   22 23566777888999999999999999999999999999998775543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.35  E-value=0.23  Score=41.90  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        59 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      |..+.-.+-|++- +..+.+++.|.+....+++=-+..+..+.+.+-+.+++|||=+++  .=...++|+++.+.|..++
T Consensus       207 K~t~~nii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkk--Em~~v~iGiilivvgai~l  283 (288)
T COG4975         207 KYTWLNIIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKK--EMVYVIIGIILIVVGAILL  283 (288)
T ss_pred             HHHHHHHhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchh--hhhhhhhhHHHHHHHhhhh
Confidence            3456667888884 899999999999888888888888999999999999999997777  1122344555555555544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=89.62  E-value=6.7  Score=32.84  Aligned_cols=110  Identities=20%  Similarity=0.229  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhh
Q 023321           22 GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG----PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN   96 (284)
Q Consensus        22 ~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~   96 (284)
                      +...++..++..+++..+++. ....  +....    ..++.....+..+-|+.. .+...+--|.++-++...-+++..
T Consensus       182 Nf~d~dtmfYnNllslPiL~~~s~~~--edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGA  258 (309)
T COG5070         182 NFKDFDTMFYNNLLSLPILLSFSFLF--EDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGA  258 (309)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHh--ccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHH
Confidence            577899999999999999887 4433  22211    234554556777777776 555566778888888888999998


Q ss_pred             hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        97 ~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      +.-.-..+-+.++++|+.++.      ++.++.+++...++-..
T Consensus       259 LNKlp~alaGlvffdap~nf~------si~sillGflsg~iYav  296 (309)
T COG5070         259 LNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV  296 (309)
T ss_pred             hhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence            888888889999999999999      99999999988877653

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=88.97  E-value=2.8  Score=30.57  Aligned_cols=68  Identities=13%  Similarity=0.272  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCcc---chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPV---FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~---~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      ++...++..+|..-....++.   .-+...-.-.+.++++++.+-|++|+..+++|..+.+.|+.+..+..
T Consensus        35 ~~~G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P  105 (107)
T PF02694_consen   35 LLPGALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP  105 (107)
T ss_pred             HhhHHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence            444455555555444433322   23566777888999999999999999999999999999998876543

; GO: 0016020 membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.72  E-value=2.7  Score=30.56  Aligned_cols=113  Identities=14%  Similarity=0.047  Sum_probs=68.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            1 MALVEIGEVGMITLGKAAMSSGMSNFVYV--VYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      |+.+.++||...++.|.... +++...-.  -+|.+.          +  +.+ ...++   |.+.+-. +++ -....+
T Consensus         8 lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~l----------q--e~~-tl~l~---w~Y~iPF-llN-qcgSal   68 (125)
T KOG4831|consen    8 LVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIAL----------Q--EMK-TLFLN---WEYLIPF-LLN-QCGSAL   68 (125)
T ss_pred             HHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHH----------H--HHH-HHHHh---HHHHHHH-HHH-HhhHHH
Confidence            46788999999999999863 44322111  111110          0  100 01111   1222222 222 334577


Q ss_pred             HHHHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321           79 AITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV  138 (284)
Q Consensus        79 ~~~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li  138 (284)
                      ||.-++.++-+.+..+. ++.-.|+++++..+ +|+...++     .+.|..+.++|+.+.
T Consensus        69 y~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhe
Confidence            88889999998888655 56777888888776 55544442     899999999998765

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.26  E-value=4.5  Score=35.50  Aligned_cols=124  Identities=19%  Similarity=0.232  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC-----CCC-CcCHHHHHHHHHHHHHHHHHHHHH
Q 023321            7 GEVGMITLGKAAMS-SGMSNFVYVVYYNALGTFILLH-YFIYNTYRS-----KGP-VLTFSLLCKFFMLGVLGICLVQIF   78 (284)
Q Consensus         7 ~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~-----~~~-~~~~~~~~~~~~~g~~~~~~~~~~   78 (284)
                      .=+...+..|+-.+ .+.+.+++.++..+.+.+.+.. ....  ...     ..+ ......+..+.+-++++ .+-..+
T Consensus       168 ~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~--ge~~~l~~~~~~~~~~~~~~~~~lScv~g-f~isy~  244 (314)
T KOG1444|consen  168 TTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFIT--GELDALSLNFDNWSDSSVLVVMLLSCVMG-FGISYT  244 (314)
T ss_pred             HHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHh--cchHHHHhhcccccchhHHHHHHHHHHHH-HHHHHH
Confidence            33455566777664 3678888999999998887776 4333  110     011 11223455666667776 555666


Q ss_pred             HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321           79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS  139 (284)
Q Consensus        79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~  139 (284)
                      -++..+..++..-++.....-..+.+...++.+++.++.      ..+|+.++++|-.+-.
T Consensus       245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            778888888877777776666667777777888999999      9999999999997764

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=84.81  E-value=2.9  Score=36.17  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321          190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      .++-..|..+.+.++....++....+.-...+++-+++.-+++.+++..||+|+..+..|++.+-..
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3444556667777888888888888888889999999999999999999999999999998887543

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=82.76  E-value=1.6  Score=31.66  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=25.9

Q ss_pred             HHHHHHHhCCCCchhhHHHHHHHHHHHHHh
Q 023321          224 VFMAVMFLGETPHLGSLIGTVVIAFGFYAV  253 (284)
Q Consensus       224 ~i~~~~~~gE~~~~~~~~G~~li~~g~~l~  253 (284)
                      +.++++++||++++.+..|.++++.+++..
T Consensus        77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            456778999999999999999999887754

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=81.90  E-value=6.4  Score=30.34  Aligned_cols=66  Identities=8%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchhhhh-chHHHHHHHHHHH-H---hCCCCchhhHHHHHHHHHHHHH
Q 023321          187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVM-F---LGETPHLGSLIGTVVIAFGFYA  252 (284)
Q Consensus       187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-~l~pv~a~i~~~~-~---~gE~~~~~~~~G~~li~~g~~l  252 (284)
                      +.+++....-..+..+..+++|++.+.... .-+-+.+.+++.+ +   -.++++..+++|.++++.|+++
T Consensus        68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            334555566667777888888888766554 4466777888875 2   3467889999999999999864

>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed

Probab=81.65  E-value=47  Score=31.19  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=18.8

Q ss_pred             CchhhHHHHHHHHHHHHHhhcc
Q 023321          235 PHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       235 ~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      ++..|++.+.++++|++++.+.
T Consensus       254 l~~~Q~lSl~~il~gl~~~~~~  275 (460)
T PRK13108        254 IRINSFTSTFVFIGAVVYIILA  275 (460)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh
Confidence            7889999999999998887653

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.81  E-value=4.9  Score=28.79  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321          223 AVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW  255 (284)
Q Consensus       223 a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~  255 (284)
                      -+.++.++++|++.+.++.|..+++.+++...+
T Consensus        83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            345788999999999999999999999987753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.25
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.91
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.56
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.54

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.25  E-value=2.6e-11  Score=92.57  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321          187 FQAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ  257 (284)
Q Consensus       187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~  257 (284)
                      ...+++++++|++|.+++|+++++.+..+ ..+.|+++++++++++||+++..+++|+++|+.|+++....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45578899999999999999999999999 899999999999999999999999999999999999997644

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.91  E-value=2.2e-08  Score=73.61  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321          187 FQAIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA  256 (284)
Q Consensus       187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~  256 (284)
                      ...++...++|.++.+++|+.+.+.+..+ ..+.|+++.+.+++++||+++..+++|..+++.|+++....
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            44577788999999999999999999998 89999999999999999999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.56  E-value=2.6e-07  Score=67.82  Aligned_cols=69  Identities=19%  Similarity=0.273  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           66 MLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        66 ~~g~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      +.+.+++..++.++..++++.|.+.+..+ ..+.|+++++++++++||+++..      +++|+.+.++|+.++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            56777789999999999999999999988 79999999999999999999999      99999999999988853

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.54  E-value=1.4e-07  Score=71.87  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321           65 FMLGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL  140 (284)
Q Consensus        65 ~~~g~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~  140 (284)
                      .+.+++++++++.++.+++++.+++.+..+ .++.|++++++++++++|+++..      +++|+.+.++|+.++..
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            367777789999999999999999999988 89999999999999999999999      99999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00