Citrus Sinensis ID: 023323
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 284 | ||||||
| 359486373 | 419 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.677 | 0.838 | 1e-145 | |
| 357461395 | 433 | hypothetical protein MTR_3g071650 [Medic | 1.0 | 0.655 | 0.841 | 1e-145 | |
| 255559543 | 421 | conserved hypothetical protein [Ricinus | 1.0 | 0.674 | 0.838 | 1e-143 | |
| 356569284 | 436 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.651 | 0.820 | 1e-142 | |
| 449460876 | 429 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.662 | 0.823 | 1e-142 | |
| 449530089 | 366 | PREDICTED: uncharacterized LOC101220068, | 1.0 | 0.775 | 0.823 | 1e-142 | |
| 224098734 | 425 | predicted protein [Populus trichocarpa] | 1.0 | 0.668 | 0.809 | 1e-139 | |
| 356540007 | 442 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.642 | 0.809 | 1e-139 | |
| 357492809 | 488 | CCP [Medicago truncatula] gi|355518028|g | 1.0 | 0.581 | 0.813 | 1e-139 | |
| 224112437 | 354 | predicted protein [Populus trichocarpa] | 1.0 | 0.802 | 0.785 | 1e-137 |
| >gi|359486373|ref|XP_002277384.2| PREDICTED: uncharacterized protein LOC100262072 [Vitis vinifera] gi|297736550|emb|CBI25421.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 238/284 (83%), Positives = 266/284 (93%)
Query: 1 MLETLRGKRMMFVGDSLNRGQYISMVCLLHRLVPENAKSMETFDSLTVFTAKDYNTTIEF 60
MLETLRGKRMMFVGDSLNRGQY+SMVCLLH L+PE+AKSMETFDSLT+FTAK+YN TIEF
Sbjct: 136 MLETLRGKRMMFVGDSLNRGQYVSMVCLLHSLIPEDAKSMETFDSLTIFTAKEYNATIEF 195
Query: 61 YWAPFLLKSNADNAVIHRITDRIVRKGSIDNHGQHWKGADILVFNTYLWWMTGQKMKILK 120
YWAPFLL+SN+D+AVIHR++DRIVRKGSI+ HG++WKG DILVFNTYLWWMTG KMKIL+
Sbjct: 196 YWAPFLLESNSDDAVIHRVSDRIVRKGSINKHGKYWKGVDILVFNTYLWWMTGLKMKILR 255
Query: 121 GSFDDEKKEIVEMPTENAYRMVMKSMLRWVKLNMDPKKTRVFFTSMSPTHAKSIEWGGEP 180
GSFDDE K+IVE+ TE+A+RM MKSML+WV+ NMDPKKTRVFFTSMSP+HAKSI+WGGE
Sbjct: 256 GSFDDEVKDIVEITTEDAFRMAMKSMLKWVEKNMDPKKTRVFFTSMSPSHAKSIDWGGEA 315
Query: 181 GKNCYNETTPIEDPNYWGSDCDKRIMQVIGEVFGNSKFPITFLNITQLSSYRKDAHTSIY 240
GKNCYNETT IEDP YWGSDC K +M+VIGEVF SK PITFLNITQLSSYR+DAHTSIY
Sbjct: 316 GKNCYNETTMIEDPTYWGSDCRKSVMEVIGEVFSKSKVPITFLNITQLSSYRRDAHTSIY 375
Query: 241 KKQWNPLSPEQVANPVSYADCTHWCLPGLQDTWNELLFTKLFYP 284
KKQW+PL+PEQ+ANPVSYADC HWCLPGLQDTWNELLFTKLFYP
Sbjct: 376 KKQWSPLTPEQLANPVSYADCVHWCLPGLQDTWNELLFTKLFYP 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461395|ref|XP_003600979.1| hypothetical protein MTR_3g071650 [Medicago truncatula] gi|355490027|gb|AES71230.1| hypothetical protein MTR_3g071650 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|255559543|ref|XP_002520791.1| conserved hypothetical protein [Ricinus communis] gi|223539922|gb|EEF41500.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356569284|ref|XP_003552833.1| PREDICTED: uncharacterized protein LOC100782397 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449460876|ref|XP_004148170.1| PREDICTED: uncharacterized protein LOC101220068 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449530089|ref|XP_004172029.1| PREDICTED: uncharacterized LOC101220068, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224098734|ref|XP_002311248.1| predicted protein [Populus trichocarpa] gi|222851068|gb|EEE88615.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356540007|ref|XP_003538483.1| PREDICTED: uncharacterized protein LOC100807879 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357492809|ref|XP_003616693.1| CCP [Medicago truncatula] gi|355518028|gb|AES99651.1| CCP [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224112437|ref|XP_002316189.1| predicted protein [Populus trichocarpa] gi|222865229|gb|EEF02360.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 284 | ||||||
| TAIR|locus:2063125 | 425 | TBL33 "AT2G40320" [Arabidopsis | 0.996 | 0.665 | 0.784 | 5.2e-129 | |
| TAIR|locus:2082078 | 487 | ESK1 "ESKIMO 1" [Arabidopsis t | 0.982 | 0.572 | 0.529 | 3e-78 | |
| TAIR|locus:2179172 | 434 | TBL3 "TRICHOME BIREFRINGENCE-L | 0.985 | 0.645 | 0.498 | 7.1e-77 | |
| TAIR|locus:2065069 | 424 | TBL28 "TRICHOME BIREFRINGENCE- | 0.989 | 0.662 | 0.508 | 1.9e-74 | |
| TAIR|locus:2057145 | 410 | TBL34 "AT2G38320" [Arabidopsis | 0.971 | 0.673 | 0.450 | 1e-68 | |
| TAIR|locus:2088659 | 556 | TBL1 "AT3G12060" [Arabidopsis | 0.961 | 0.491 | 0.375 | 5.2e-49 | |
| TAIR|locus:2170184 | 608 | TBR [Arabidopsis thaliana (tax | 0.957 | 0.447 | 0.373 | 3.3e-47 | |
| TAIR|locus:2096094 | 475 | TBL6 "AT3G62390" [Arabidopsis | 0.947 | 0.566 | 0.362 | 1.2e-42 | |
| TAIR|locus:2178813 | 402 | PMR5 "AT5G58600" [Arabidopsis | 0.929 | 0.656 | 0.372 | 1.5e-42 | |
| TAIR|locus:2080280 | 379 | TBL36 "AT3G54260" [Arabidopsis | 0.901 | 0.675 | 0.339 | 9.6e-41 |
| TAIR|locus:2063125 TBL33 "AT2G40320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
Identities = 222/283 (78%), Positives = 257/283 (90%)
Query: 1 MLETLRGKRMMFVGDSLNRGQYISMVCLLHRLVPENAKSMETFDSLTVFTAKDYNTTIEF 60
MLETLRGKRMM+VGDSLNRG ++SM+CLLHRL+PE+ KS++T SLTVFTAK+YN TIEF
Sbjct: 142 MLETLRGKRMMYVGDSLNRGMFVSMICLLHRLIPEDQKSIKTNGSLTVFTAKEYNATIEF 201
Query: 61 YWAPFLLKSNADNAVIHRITDRIVRKGSIDNHGQHWKGADILVFNTYLWWMTGQKMKILK 120
YWAPFLL+SN+D+A++HRI+DR+VRKGSI+ HG+HWKG DI++FNTYLWWMTG KM IL+
Sbjct: 202 YWAPFLLESNSDDAIVHRISDRVVRKGSINKHGRHWKGVDIIIFNTYLWWMTGLKMNILQ 261
Query: 121 GSFDDEKKEIVEMPTENAYRMVMKSMLRWVKLNMDPKKTRVFFTSMSPTHAKSIEWGGEP 180
GSFDD++K IVE+ TE+AYRM MKSMLRWVK NMD KKTRVFFTSMSPTHAK I+WGGEP
Sbjct: 262 GSFDDKEKNIVEVSTEDAYRMGMKSMLRWVKNNMDRKKTRVFFTSMSPTHAKGIDWGGEP 321
Query: 181 GKNCYNETTPIEDPNYWGSDCDKRIMQVIGEVFGNSKFPITFLNITQLSSYRKDAHTSIY 240
G+NCYN+TT IEDP+YWGSDC K IM+VIGEVFG SK PIT LNITQ+S+YRKDAHTSIY
Sbjct: 322 GQNCYNQTTLIEDPSYWGSDCRKSIMKVIGEVFGRSKTPITLLNITQMSNYRKDAHTSIY 381
Query: 241 KKQWNPLSPEQVANPVSYADCTHWCLPGLQDTWNELLFTKLFY 283
KKQW+PL+ EQ+ NP SYADC HWCLPGLQDTWNELLF KLFY
Sbjct: 382 KKQWSPLTAEQLENPTSYADCVHWCLPGLQDTWNELLFAKLFY 424
|
|
| TAIR|locus:2082078 ESK1 "ESKIMO 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2179172 TBL3 "TRICHOME BIREFRINGENCE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2065069 TBL28 "TRICHOME BIREFRINGENCE-LIKE 28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2057145 TBL34 "AT2G38320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00029364001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (339 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 284 | |||
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 1e-100 | |
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 8e-69 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
Score = 293 bits (753), Expect = e-100
Identities = 116/284 (40%), Positives = 158/284 (55%), Gaps = 25/284 (8%)
Query: 1 MLETLRGKRMMFVGDSLNRGQYISMVCLLHRLVPENAKSMETFDSLTVFTAKDYNTTIEF 60
LE LRGKR++FVGDSL+R Q+ S+VCLL ++ P K++E L F KDYN TIEF
Sbjct: 9 FLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFKDYNVTIEF 68
Query: 61 YWAPFLLKSNADNAVIHRITDRIVRKGSIDN-HGQHWKGADILVFNTYLWWMTGQKMKIL 119
YW+PFL++S+ R+++ SID + W GAD+LVFN+ WW+ K+
Sbjct: 69 YWSPFLVESD-----NAEEGKRVLKLDSIDEKWSKLWPGADVLVFNSGHWWLHR---KVY 120
Query: 120 KGSFDDEKKEIVEMPTENAYRMVMKSMLRWVKLNMDPKKTRVFFTSMSPTHAKSIEWGGE 179
G +K EM +AYR +++ +WV +N+ P KTRVFF + SP H + EW
Sbjct: 121 IGWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFSPVHFEGGEWN-- 178
Query: 180 PGKNCYNETTPIEDPNYWGSDCDKRIMQVIGEVF--GNSKFPITFLNITQLSSYRKDAHT 237
G +CY ET P+ ++ ++ EV K P+ L+IT LS YRKD H
Sbjct: 179 TGGSCY-ETEPLL--GSEYKGLTPEMIDIVNEVLSRAAMKTPVKLLDITLLSQYRKDGHP 235
Query: 238 SIYKKQWNPLSPEQVANPVSYADCTHWCLPGLQDTWNELLFTKL 281
S+Y+K P DC HWCLPG+ DTWNELL L
Sbjct: 236 SVYRKPGPPK---------KEQDCLHWCLPGVPDTWNELLLALL 270
|
The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 284 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 98.06 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-96 Score=694.78 Aligned_cols=271 Identities=41% Similarity=0.734 Sum_probs=235.9
Q ss_pred CcccccCCceEEEeccccchhHHHHhhhhhccccCCcceeeeeCceEEEEEeccceEEEEEeccccccccCCCccccccc
Q 023323 1 MLETLRGKRMMFVGDSLNRGQYISMVCLLHRLVPENAKSMETFDSLTVFTAKDYNTTIEFYWAPFLLKSNADNAVIHRIT 80 (284)
Q Consensus 1 fL~~~RgK~i~FVGDSl~RNq~eSLlClL~~~~p~~~~~~~~~~~~~~~~f~~~n~tv~~~wspfLV~~~~~~~~~~~~~ 80 (284)
|||+|||||||||||||+|||||||+|||++++|...+.....++..+|+|++||+||+||||||||+.++++ .
T Consensus 114 fLe~~RgKrl~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~------~ 187 (387)
T PLN02629 114 FLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ------G 187 (387)
T ss_pred HHHHhcCCeEEEeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCC------C
Confidence 8999999999999999999999999999999998766555555678899999999999999999999987543 2
Q ss_pred ceeeecCcccccccCCCCccEEEEecccccccCcccccccccccccccccccCChHHHHHHHHHHHHHHHHhhCCCCcce
Q 023323 81 DRIVRKGSIDNHGQHWKGADILVFNTYLWWMTGQKMKILKGSFDDEKKEIVEMPTENAYRMVMKSMLRWVKLNMDPKKTR 160 (284)
Q Consensus 81 ~~~l~ld~~~~~~~~w~~~DvlV~ntGhWw~~~~~~~~~~g~~~~~~~~~~~~~~~~Ay~~al~t~~~~v~~~~~~~~~~ 160 (284)
.++|++|.+|++++.|.++|||||||||||+++.. ...++++++++.++++|++.+||++||+||++||++++++.+++
T Consensus 188 ~~~l~LD~id~~a~~w~~~DvlVfntghWw~~~~~-~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~ 266 (387)
T PLN02629 188 KRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGS-LQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTR 266 (387)
T ss_pred ceeEEecCcchhhhhhccCCEEEEeCccccCCCCe-eEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 34799999998899999999999999999998863 34467788888899999999999999999999999999988999
Q ss_pred EEEEecCCCCCCCCCCCCC---CCCCCCCCCccCCCCCCCCCCCcHHHHHHHHHHhcCCCcceEEeeccccccccccCCC
Q 023323 161 VFFTSMSPTHAKSIEWGGE---PGKNCYNETTPIEDPNYWGSDCDKRIMQVIGEVFGNSKFPITFLNITQLSSYRKDAHT 237 (284)
Q Consensus 161 vf~Rt~sP~Hf~~g~W~~~---~gg~C~~~t~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lLdiT~ls~~R~DgHp 237 (284)
|||||+||+|||||+||++ .+|+|+++|+|+.++++.+ .....+++++++.++++.+|+|||||+||++||||||
T Consensus 267 vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~~~--~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHP 344 (387)
T PLN02629 267 VFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTYPG--AYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHP 344 (387)
T ss_pred EEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccccC--cchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCc
Confidence 9999999999999999982 2357989999998766542 2344566888999888999999999999999999999
Q ss_pred ccccCcCCCCCccccCCCCCCCCcccccCCCchHHHHHHHHHhhcC
Q 023323 238 SIYKKQWNPLSPEQVANPVSYADCTHWCLPGLQDTWNELLFTKLFY 283 (284)
Q Consensus 238 ~~y~~~~~~~~~~~~~~~~~~~DC~HWCLPGv~D~WNelL~~~L~~ 283 (284)
|+|+. +.++++++++..++||+||||||||||||||||++|++
T Consensus 345 s~Y~~---~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~~ 387 (387)
T PLN02629 345 SIYSG---DLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALFF 387 (387)
T ss_pred ccccC---CCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHhC
Confidence 99973 23344556666789999999999999999999999974
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 284 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 5e-04
Identities = 44/291 (15%), Positives = 88/291 (30%), Gaps = 81/291 (27%)
Query: 1 MLETLRGKRMMFVGDSLN--RGQYISMVCLLHRLVPENAKS-------METFD------- 44
+L T R K+ V D L+ +IS+ L P+ KS D
Sbjct: 268 ILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 45 ----SLTVFTA--KDYNTTIEFYWAPFLLKSNADNAVIHRITDRIVRKGSIDNHGQHWKG 98
L++ +D T + + N D + I + + + + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNW-----KHVNCDK--LTTIIESSLNVLEPAEYRKMFD- 376
Query: 99 ADILVF--NTYLWWMTGQKMKILKGSFDDEKKEIVEMPTENAYRMVMKSML-RWVK---- 151
+ VF + + + ++ + D K V + ++ S++ + K
Sbjct: 377 -RLSVFPPSA---HIPTILLSLI---WFDVIKSDVMVVVN---KLHKYSLVEKQPKESTI 426
Query: 152 ----LNMDPKKTRVFFTSMSPTHAKSIEWGGEPGKNCYNETTPIEDPNYWGSDCDKRIMQ 207
+ ++ K ++ H ++ P ++ P Y+
Sbjct: 427 SIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYF--------YS 475
Query: 208 VIG---------EVFGNSKFPITFLNITQLSSYRKDAHTSIYKKQWNPLSP 249
IG E + F + FL+ L +K H S WN
Sbjct: 476 HIGHHLKNIEHPERM--TLFRMVFLDFRFLE--QKIRHDST---AWNASGS 519
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 284 | |||
| 3hp4_A | 185 | GDSL-esterase; psychrotrophic, monoethylphosphonat | 80.95 |
| >3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0 | Back alignment and structure |
|---|
Probab=80.95 E-value=0.64 Score=37.29 Aligned_cols=49 Identities=6% Similarity=0.035 Sum_probs=30.6
Q ss_pred CccEEEEecccccccCcccccccccccccccccccCChHHHHHHHHHHHHHHHHhhCCCCcceEEEEec-CCC
Q 023323 98 GADILVFNTYLWWMTGQKMKILKGSFDDEKKEIVEMPTENAYRMVMKSMLRWVKLNMDPKKTRVFFTSM-SPT 169 (284)
Q Consensus 98 ~~DvlV~ntGhWw~~~~~~~~~~g~~~~~~~~~~~~~~~~Ay~~al~t~~~~v~~~~~~~~~~vf~Rt~-sP~ 169 (284)
..|++||..|.-=. ..+ ...+.|+..++.+++.+.+. ...|++-++ .|.
T Consensus 66 ~pd~vvi~~G~ND~-------~~~------------~~~~~~~~~~~~~i~~~~~~----~~~vvl~~~~~p~ 115 (185)
T 3hp4_A 66 EPTHVLIELGANDG-------LRG------------FPVKKMQTNLTALVKKSQAA----NAMTALMEIYIPP 115 (185)
T ss_dssp CCSEEEEECCHHHH-------HTT------------CCHHHHHHHHHHHHHHHHHT----TCEEEEECCCCCS
T ss_pred CCCEEEEEeecccC-------CCC------------cCHHHHHHHHHHHHHHHHHc----CCeEEEEeCCCCC
Confidence 67999999885210 000 12577899999999888663 345555443 444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 284 | |||
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 96.62 | |
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 91.48 | |
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 89.62 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 87.52 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 84.63 |
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=96.62 E-value=0.0034 Score=50.61 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.5
Q ss_pred ccCCceEEEeccccc
Q 023323 5 LRGKRMMFVGDSLNR 19 (284)
Q Consensus 5 ~RgK~i~FVGDSl~R 19 (284)
++||+|.++|||++-
T Consensus 1 ~~~~ti~~~GDS~~~ 15 (208)
T d2o14a2 1 VTNRTIYVGGDSTVC 15 (208)
T ss_dssp CCCCEEEEEECTTTS
T ss_pred CCCCEEEEEEccccc
Confidence 589999999999884
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| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
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| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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