Citrus Sinensis ID: 023334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Secondary Structure (PSIPRED)
cccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcEEEEEEEEccHHHHHHHHHHHHcccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccEEEccccccccccccccHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccEEcccccccccccccccEEEEcccccEEcccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccccEEEEccccHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEEEEEc
Coil and Loop (DISEMBL)
mstalpmrlllplssvsttnattpffnsidfpskflkspnpnfnffassshptqhswrarrtkktwlcgnmrkdqdmdglrseeenvigmfgsdedvgtqiptqaqsvvegsgavmvsefkpvpdvDYLQELLAIQQqgpraigffgtrnmgFMHQELIEILSYALVITKnhiytsgasgtNAAVIRGALraerpdlltvilpqslkkqppeSQELLAKVKTVIekphndhlplieasrLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Flexible Loop (DISEMBL)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFassshptqhswrarrtkktwlcgnmrkdqdmdglrSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILpqslkkqppeSQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Low Complexity Region (SEG)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Disordered region (IsUnstruct)
***************************************************************KTWLCG***************************************V*GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL**************LAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYL*
Disordered Region (DISOPRED)
***ALPMRLLLPLSSVSTTNATTPFFNSIDFPSKF*KSPNPNFNFFAS*****************WLCGNM***************************TQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP***************KVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Disordered Region (DISEMBL)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASS***********RTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Disordered Region (DISPRO)
*STALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMR**************VIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224128754	212	predicted protein [Populus trichocarpa]	0.749	1.0	0.896	1e-110
449444096	275	PREDICTED: uncharacterized protein LOC10	0.872	0.898	0.751	1e-109
388516675	288	unknown [Lotus japonicus]	0.858	0.843	0.787	1e-109
359478235	297	PREDICTED: uncharacterized protein LOC10	0.784	0.747	0.855	1e-109
255547516	207	conserved hypothetical protein [Ricinus	0.731	1.0	0.898	1e-107
147771568	213	hypothetical protein VITISV_028411 [Viti	0.752	1.0	0.877	1e-105
225462553	286	PREDICTED: uncharacterized protein LOC10	0.770	0.762	0.830	1e-105
296085265	213	unnamed protein product [Vitis vinifera]	0.752	1.0	0.830	1e-102
255637577	268	unknown [Glycine max]	0.904	0.955	0.690	1e-102
30689549	289	uncharacterized protein [Arabidopsis tha	0.904	0.885	0.713	1e-100

>gi|224128754|ref|XP_002328958.1| predicted protein [Populus trichocarpa] gi|222839192|gb|EEE77543.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/212 (89%), Positives = 204/212 (96%)

Query: 72  RKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQE 131
           R DQ+MD  ++EEEN+  MFGS+ED G+QIPTQAQ++VEGSG V++SEFKPVPDVDYLQE
Sbjct: 1   RNDQEMDSWKAEEENIECMFGSNEDTGSQIPTQAQTIVEGSGTVVLSEFKPVPDVDYLQE 60

Query: 132 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191
           LLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR
Sbjct: 61  LLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 120

Query: 192 AERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQ 251
           AE+P+LLTVILPQSLKKQPPESQELLAKV+ VIEKPHNDHLPLIEASRLCNMDIISHVQQ
Sbjct: 121 AEKPELLTVILPQSLKKQPPESQELLAKVQNVIEKPHNDHLPLIEASRLCNMDIISHVQQ 180

Query: 252 VICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
           VICFAFHDSRLLMETCQEAKNLRKIVTLFYLD
Sbjct: 181 VICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444096|ref|XP_004139811.1| PREDICTED: uncharacterized protein LOC101209189 [Cucumis sativus] gi|449492610|ref|XP_004159047.1| PREDICTED: uncharacterized LOC101209189 [Cucumis sativus]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/266 (75%), Positives = 220/266 (82%), Gaps = 19/266 (7%)

Query: 20  NATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRARRTKKTWLCGNMRKDQDMDG 79
           N + PFF           SP+PNF  F SS        R+      W+ G++R D D D 
Sbjct: 27  NISNPFF-----------SPSPNFPLFVSSRR------RSSLNTSLWIRGHIRGDTDGDS 69

Query: 80  LRSEEENVIGMFG--SDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQ 137
              ++ N + MFG  S+++ GTQIPTQAQS+VEGSG+VMVSEFKPVPDVDYLQELLAIQQ
Sbjct: 70  SVPQKNNTMRMFGFGSNDETGTQIPTQAQSIVEGSGSVMVSEFKPVPDVDYLQELLAIQQ 129

Query: 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDL 197
           QGPRAIGFFGTRNMGF+HQELIEILSYA+VITKNHIYTSGASGTNAAVIRGALRAE+P+L
Sbjct: 130 QGPRAIGFFGTRNMGFLHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPEL 189

Query: 198 LTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAF 257
           LTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASRLCNMDIISHVQQVICFAF
Sbjct: 190 LTVILPQSLKKQPPESQELLSKVRNVIEKPHNDHLSLIEASRLCNMDIISHVQQVICFAF 249

Query: 258 HDSRLLMETCQEAKNLRKIVTLFYLD 283
           HDSRLLMETCQEAKNLRKIVTLFYLD
Sbjct: 250 HDSRLLMETCQEAKNLRKIVTLFYLD 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516675|gb|AFK46399.1| unknown [Lotus japonicus]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/254 (78%), Positives = 215/254 (84%), Gaps = 11/254 (4%)

Query: 40  NPNFNFFASSSHPTQHS-----WRARRTK-----KTWLCGNMRKDQDMDGLRSEEENVIG 89
           NPNFN F S S   QH      W    +K     +TWL G+M++DQD      E EN +G
Sbjct: 36  NPNFNAF-SVSLSQQHRRLGGYWNKTASKPFFPRRTWLYGHMKRDQDRHTPDYELENGLG 94

Query: 90  MFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTR 149
           +FGSDE  GTQIPTQAQS+VEG GA+ V+E+KPVPDVDYLQELLAIQQQGPRAIGFFGTR
Sbjct: 95  LFGSDEQRGTQIPTQAQSLVEGPGAIRVAEYKPVPDVDYLQELLAIQQQGPRAIGFFGTR 154

Query: 150 NMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ 209
           NMGFMHQELIEILSYA+VITKNHIYT GASGTNAAVIRGALRAE+PD LTVILPQSL KQ
Sbjct: 155 NMGFMHQELIEILSYAMVITKNHIYTPGASGTNAAVIRGALRAEKPDFLTVILPQSLSKQ 214

Query: 210 PPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQE 269
           PPESQELL+KVK VIEKP+NDHLPLIEASRLCNMDIIS VQQVICFAFHDSRLLMETCQE
Sbjct: 215 PPESQELLSKVKKVIEKPYNDHLPLIEASRLCNMDIISKVQQVICFAFHDSRLLMETCQE 274

Query: 270 AKNLRKIVTLFYLD 283
           AKNLRKIVTLFYLD
Sbjct: 275 AKNLRKIVTLFYLD 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478235|ref|XP_002275901.2| PREDICTED: uncharacterized protein LOC100242287 [Vitis vinifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/222 (85%), Positives = 207/222 (93%)

Query: 62  TKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFK 121
           ++  W+CG+MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFK
Sbjct: 76  SRHKWICGHMRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFK 135

Query: 122 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGT 181
           PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGT
Sbjct: 136 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGT 195

Query: 182 NAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLC 241
           NAAVIRGALRAE+P+LLTVILPQSLK QPPESQELL+KVK VIEKP+NDHLPLIEASRLC
Sbjct: 196 NAAVIRGALRAEKPELLTVILPQSLKMQPPESQELLSKVKNVIEKPYNDHLPLIEASRLC 255

Query: 242 NMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
           NMDIISHVQQVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 256 NMDIISHVQQVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547516|ref|XP_002514815.1| conserved hypothetical protein [Ricinus communis] gi|223545866|gb|EEF47369.1| conserved hypothetical protein [Ricinus communis]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/207 (89%), Positives = 199/207 (96%)

Query: 77  MDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQ 136
           MD  ++EEEN++ MFG DED GTQIPTQAQS+VEGS  V+V+E+KPVPDVDYLQELLAIQ
Sbjct: 1   MDSWKAEEENLVSMFGPDEDTGTQIPTQAQSLVEGSSTVVVAEYKPVPDVDYLQELLAIQ 60

Query: 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPD 196
           QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI+TSGASGTNAAVIRGALRAE+P+
Sbjct: 61  QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIFTSGASGTNAAVIRGALRAEKPE 120

Query: 197 LLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFA 256
           LLTVILPQSLKKQPPESQELLAKV+ VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFA
Sbjct: 121 LLTVILPQSLKKQPPESQELLAKVQNVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFA 180

Query: 257 FHDSRLLMETCQEAKNLRKIVTLFYLD 283
           FHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 181 FHDSKLLMETCQEAKNLRKIVTLFYLD 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771568|emb|CAN60471.1| hypothetical protein VITISV_028411 [Vitis vinifera] gi|296084366|emb|CBI24754.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/213 (87%), Positives = 200/213 (93%)

Query: 71  MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130
           MRKDQD    R EEEN   +F SDE+V +Q+PTQAQS+VEGSGAV+VSEFKPVPDVDYLQ
Sbjct: 1   MRKDQDGGSWRDEEENPGRIFCSDEEVASQVPTQAQSLVEGSGAVLVSEFKPVPDVDYLQ 60

Query: 131 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 190
           ELLAIQQQGPRAIGFFGTRNMGF HQELIEILSYA+VITKNHI+TSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQQGPRAIGFFGTRNMGFTHQELIEILSYAMVITKNHIFTSGASGTNAAVIRGAL 120

Query: 191 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 250
           RAE+P+LLTVILPQSLK QPPESQELL+KVK VIEKP+NDHLPLIEASRLCNMDIISHVQ
Sbjct: 121 RAEKPELLTVILPQSLKMQPPESQELLSKVKNVIEKPYNDHLPLIEASRLCNMDIISHVQ 180

Query: 251 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
           QVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 181 QVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462553|ref|XP_002267280.1| PREDICTED: uncharacterized protein LOC100261763 [Vitis vinifera]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/218 (83%), Positives = 206/218 (94%)

Query: 66  WLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD 125
           WLCG MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D
Sbjct: 69  WLCGYMRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTD 128

Query: 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAV 185
           +DYLQELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAV
Sbjct: 129 MDYLQELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAV 188

Query: 186 IRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDI 245
           IRGALRAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASRLCN+DI
Sbjct: 189 IRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLHLIEASRLCNLDI 248

Query: 246 ISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
           I+ VQQVICFAFHDS+LLMETCQEA+NLRKIVTLFYLD
Sbjct: 249 ITCVQQVICFAFHDSKLLMETCQEARNLRKIVTLFYLD 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085265|emb|CBI28997.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/213 (83%), Positives = 202/213 (94%)

Query: 71  MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQ 130
           MR+DQDMD  R++E N + MFGSD++V TQ+PTQAQSVVEGSG+++VS ++PV D+DYLQ
Sbjct: 1   MRRDQDMDSSRNDEVNGVHMFGSDDEVFTQVPTQAQSVVEGSGSLLVSGYEPVTDMDYLQ 60

Query: 131 ELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 190
           ELLAIQQ+GPRAIGFFGTRNMGF+HQELIEILSYA+VIT+NHIYTSGASGTNAAVIRGAL
Sbjct: 61  ELLAIQQEGPRAIGFFGTRNMGFLHQELIEILSYAMVITENHIYTSGASGTNAAVIRGAL 120

Query: 191 RAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQ 250
           RAE+P+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHNDHL LIEASRLCN+DII+ VQ
Sbjct: 121 RAEKPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLHLIEASRLCNLDIITCVQ 180

Query: 251 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
           QVICFAFHDS+LLMETCQEA+NLRKIVTLFYLD
Sbjct: 181 QVICFAFHDSKLLMETCQEARNLRKIVTLFYLD 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637577|gb|ACU19114.1| unknown [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/281 (69%), Positives = 220/281 (78%), Gaps = 25/281 (8%)

Query: 1   MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQHSWRAR 60
           MS  + + L L  SS+    A+ P +N           PNPNFN   S S     S   R
Sbjct: 1   MSATVTLTLNLCRSSIV---ASCPHYN---------HKPNPNFNALFSFSLSLSLSHHRR 48

Query: 61  --------RTKKTWLCGNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
                    +++TWL G+M++D+D      E EN + +FGSDE++ TQIPTQAQS+VEGS
Sbjct: 49  IAICKKPFSSRRTWLHGHMKRDRDY-----ELENGLALFGSDEELATQIPTQAQSLVEGS 103

Query: 113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
           G++ V+EFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEI SYA+VITKNH
Sbjct: 104 GSIRVAEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEIFSYAMVITKNH 163

Query: 173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHL 232
           IYT GASGTNAAVIRGALRAE+P+LLTVILPQSL+KQPPESQELL+KVK VIEKPHNDHL
Sbjct: 164 IYTFGASGTNAAVIRGALRAEKPELLTVILPQSLRKQPPESQELLSKVKNVIEKPHNDHL 223

Query: 233 PLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNL 273
           PLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAK +
Sbjct: 224 PLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKKI 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689549|ref|NP_850404.1| uncharacterized protein [Arabidopsis thaliana] gi|330255257|gb|AEC10351.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/265 (71%), Positives = 214/265 (80%), Gaps = 9/265 (3%)

Query: 27  NSIDFPSKFLKSPNPNFN-----FFASSSHPTQHSWRAR---RTKKTWLCGNMRKDQDMD 78
           +S   PS F +S NPNF          SS     S R R   R     L  +MR  ++ +
Sbjct: 26  DSFHAPSSF-RSKNPNFKRRLSSSSCCSSQSQLFSGRCRSYSRCVTMCLPEHMRNQENTE 84

Query: 79  GLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQ 138
            L  +++++  +  SDED G +IPTQAQ++VEGSG+V VSE KP  DVDY+QELLAIQQQ
Sbjct: 85  ILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGSGSVAVSELKPAADVDYIQELLAIQQQ 144

Query: 139 GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLL 198
           GPR+IGFFGTRNMGFMHQELIEILSYA+VITKNHIYTSGASGTNAAVIRGALRAERP+LL
Sbjct: 145 GPRSIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAERPELL 204

Query: 199 TVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH 258
           TVILPQSLKKQPPESQELL+KV+ V+EKPHNDHLPL+EASRLCNMDIIS VQQVICFAFH
Sbjct: 205 TVILPQSLKKQPPESQELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQQVICFAFH 264

Query: 259 DSRLLMETCQEAKNLRKIVTLFYLD 283
           DS+LLMETCQEAKNLRKIVTLFYLD
Sbjct: 265 DSKLLMETCQEAKNLRKIVTLFYLD 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:1005716651	289	AT2G43945 [Arabidopsis thalian	0.992	0.972	0.694	3.2e-97
TAIR|locus:2080452	288	AT3G59870 "AT3G59870" [Arabido	0.982	0.965	0.672	1.3e-93

TAIR|locus:1005716651 AT2G43945 [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 202/291 (69%), Positives = 236/291 (81%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSH--PTQH--- 55
             MS++LP+RLLLPL++ S  +   P  +S   PS F +S NPNF    SSS    +Q    
Sbjct:     1 MSSSLPLRLLLPLTT-SLISPPPPPPDSFHAPSSF-RSKNPNFKRRLSSSSCCSSQSQLF 58

Query:    56 SWRARRTKK-TWLC--GNMRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGS 112
             S R R   +   +C   +MR  ++ + L  +++++  +  SDED G +IPTQAQ++VEGS
Sbjct:    59 SGRCRSYSRCVTMCLPEHMRNQENTEILTDKDDHIECVLESDEDSGLRIPTQAQAIVEGS 118

Query:   113 GAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH 172
             G+V VSE KP  DVDY+QELLAIQQQGPR+IGFFGTRNMGFMHQELIEILSYA+VITKNH
Sbjct:   119 GSVAVSELKPAADVDYIQELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYAMVITKNH 178

Query:   173 IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHL 232
             IYTSGASGTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+ V+EKPHNDHL
Sbjct:   179 IYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQNVVEKPHNDHL 238

Query:   233 PLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
             PL+EASRLCNMDIIS VQQVICFAFHDS+LLMETCQEAKNLRKIVTLFYLD
Sbjct:   239 PLLEASRLCNMDIISQVQQVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 289

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2080452 AT3G59870 "AT3G59870" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 197/293 (67%), Positives = 235/293 (80%)

Query:     1 MSTALPMRLLLPLSSVSTTNATTPFFNSIDFPSKFLKSPNPNFNFFASSSHPTQ-HSWRA 59
             MS+ALP++LLLPL++ S     +PF +  D P+ F +  + +    +S S   Q  S R 
Sbjct:     1 MSSALPLKLLLPLTTTSLL--PSPFRS--DNPN-FYRRRSSSSTSCSSQSQSFQLFSVRR 55

Query:    60 RRTKKTW----LC-GNMRKDQD-MDGLRSEEENVIGMFGSDEDV---GTQIPTQAQSVVE 110
             RR++ +     +C     +DQD +D   ++E+NV   F SDED    G +IPTQAQ++VE
Sbjct:    56 RRSRSSSPSIPMCFPEQTRDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVE 115

Query:   111 GSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170
             G G++ VSE + VPDVDY+QELLAIQQQGPR IGFFGTRNMGFMHQELI+ILSYA+VITK
Sbjct:   116 GPGSLAVSELQRVPDVDYIQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITK 175

Query:   171 NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHND 230
             NHIYTSGA+GTNAAVIRGALRAERP+LLTVILPQSLKKQPPESQELL+KV+ VIEKPHND
Sbjct:   176 NHIYTSGAAGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHND 235

Query:   231 HLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD 283
             HLPL+EASRLCNMDIIS VQQ+ICFAFHDS+LLMETCQEA+NLRKIVTLFYLD
Sbjct:   236 HLPLLEASRLCNMDIISQVQQIICFAFHDSKLLMETCQEARNLRKIVTLFYLD 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       283   0.00084  115 3  11 22  0.49    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  200 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.33u 0.49s 22.82t   Elapsed:  00:00:01
  Total cpu time:  22.33u 0.49s 22.82t   Elapsed:  00:00:01
  Start:  Thu May  9 21:21:42 2013   End:  Thu May  9 21:21:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF02481	212	DNA_processg_A: DNA recombination-mediator protein	99.05
TIGR00732	220	dprA DNA protecting protein DprA. Disruption of th	98.42
TIGR00725	159	conserved hypothetical protein, DprA/Smf-related,	97.6
PRK10736	374	hypothetical protein; Provisional	97.24
COG0758	350	Smf Predicted Rossmann fold nucleotide-binding pro	95.38
PF06908	177	DUF1273: Protein of unknown function (DUF1273); In	95.29
TIGR00730	178	conserved hypothetical protein, DprA/Smf-related,	92.61
PRK13660	182	hypothetical protein; Provisional	91.06
COG1611	205	Predicted Rossmann fold nucleotide-binding protein	85.45

>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins

Probab=99.05  E-value=2.8e-09  Score=91.47  Aligned_cols=139  Identities=22%  Similarity=0.193  Sum_probs=96.1

Q ss_pred             cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHH
Q 023334          138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL  216 (283)
Q Consensus       138 ~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-Qp~ESqel  216 (283)
                      .-.+.|||.|||++.=-..+..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|.|.+++
T Consensus        42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l  119 (212)
T PF02481_consen   42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL  119 (212)
T ss_dssp             GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred             ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence            3478999999999999999999999999999999999999999999999999999 44444 457999987 59999999


Q ss_pred             HHHHh-h----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEE
Q 023334          217 LAKVK-T----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL  279 (283)
Q Consensus       217 Le~V~-h----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTL  279 (283)
                      .+++. +    +=|-|-... +....-.-.|+=|..-++.+|.......---+.|++.|.+++|-|-.
T Consensus       120 ~~~i~~~~glliSe~~p~~~-~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~gr~v~~  186 (212)
T PF02481_consen  120 AERILDEGGLLISEYPPGTK-PSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQGRPVFA  186 (212)
T ss_dssp             HHHHHHTT-EEEE-S-TT-----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHHT--EEE
T ss_pred             HHHHHhcCcEEEeCCCCCCC-cccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHcCCeEEE
Confidence            99998 4    446565544 55666667899999999999999987777778999999999997754

In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.

>TIGR00732 dprA DNA protecting protein DprA

Probab=98.42  E-value=7e-06  Score=71.36  Aligned_cols=136  Identities=20%  Similarity=0.193  Sum_probs=109.4

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHHH
Q 023334          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK  219 (283)
Q Consensus       141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQ-p~ESqelLe~  219 (283)
                      +.|||.|||+..--...+.+-+++.|+..|-.|++-||-|+-+++.|||+.+..  .--.|||..|++- |.|.+++.++
T Consensus        45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~  122 (220)
T TIGR00732        45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK  122 (220)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence            789999999998889999999999999999999999999999999999999832  3335899999886 7889999998


Q ss_pred             Hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEee-CchHHHHHHHHHHhccCeeEEe
Q 023334          220 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTLF  280 (283)
Q Consensus       220 V~h-----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFH-DS~tLLetC~eAe~~~KiVTLf  280 (283)
                      +..     +=|-|...+ |....-..-|+=|..-++-+|-+--= .|-| |.|++.|.+++|-|-.+
T Consensus       123 i~~~gglliSe~p~~~~-~~~~~f~~RNriia~ls~~vivve~~~~sGt-l~ta~~A~~~gr~v~~~  187 (220)
T TIGR00732       123 IAENGGLLLSEYPPDTK-PIKYNFPKRNRIISGLSRAVLVVEAPLKSGA-LITARYALEQGREVFAY  187 (220)
T ss_pred             HHHcCCEEEEecCCCCC-CCcccHHHHHHHHHHhcCEEEEEECCCCCch-HHHHHHHHHhCCcEEEE
Confidence            863     446666443 44444456788888888888877653 4656 57899999999977543

Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.

>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1

Probab=97.60  E-value=0.00081  Score=55.96  Aligned_cols=121  Identities=22%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHH
Q 023334          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKV  220 (283)
Q Consensus       141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V  220 (283)
                      ++||++|||+.+=-+++..+-+.+.|+..|+.|++=|+.|.=.|+-|||+++ ... ..=|||+.+.. +.+   .+   
T Consensus         2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~-viGVlp~~l~~-~~~---~~---   72 (159)
T TIGR00725         2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGL-VVGILPDEDFA-GNP---YL---   72 (159)
T ss_pred             eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCe-EEEECChhhcc-CCC---Cc---
Confidence            7899999999988999999999999999999999988899999999999988 332 23368988741 100   00   


Q ss_pred             hhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEEee
Q 023334          221 KTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFY  281 (283)
Q Consensus       221 ~hlVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTLfY  281 (283)
                       .++..  .+.+    ..|  |+-++..+|=+|.+- -=+=||-|.. +|-.++|-|-+++
T Consensus        73 -~~~i~--~~~~----~~R--k~~m~~~sda~Ivlp-GG~GTL~E~~-~a~~~~kpv~~l~  122 (159)
T TIGR00725        73 -TIKVK--TGMN----FAR--NFILVRSADVVVSVG-GGYGTAIEIL-GAYALGGPVVVLR  122 (159)
T ss_pred             -eEEEE--CCCc----chH--HHHHHHHCCEEEEcC-CchhHHHHHH-HHHHcCCCEEEEE
Confidence             00011  1111    113  888999999999987 4566766655 4555788776653

This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.

>PRK10736 hypothetical protein; Provisional

Probab=97.24  E-value=0.0081  Score=57.25  Aligned_cols=136  Identities=19%  Similarity=0.170  Sum_probs=104.8

Q ss_pred             ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHHHH
Q 023334          141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK  219 (283)
Q Consensus       141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-Qp~ESqelLe~  219 (283)
                      +.|||.|||++.---....+-+++.|+..|-.|+.-+|-|.-+++-+|||.+..+  --.||+-.|++ -|+|.+++.++
T Consensus       108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g~--TIaVlg~Gld~~YP~~n~~L~~~  185 (374)
T PRK10736        108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGGK--TIAVLGNGLENIYPRRHARLAES  185 (374)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCCC--EEEEECCCCCccCCHhHHHHHHH
Confidence            6799999999999999999999999999887666666899999999999998432  34488999987 58899999999


Q ss_pred             Hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEee-CchHHHHHHHHHHhccCeeEEe
Q 023334          220 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTLF  280 (283)
Q Consensus       220 V~h-----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFH-DS~tLLetC~eAe~~~KiVTLf  280 (283)
                      +..     +=|-|-+-+ |...-=-..|+=|-.-++-+|-.--- .|-+ |-|++.|-+++|-|--+
T Consensus       186 I~~~~G~liSEyp~~~~-p~~~~Fp~RNRIIagLS~~viVvEA~~kSGs-liTA~~Al~~gR~Vfav  250 (374)
T PRK10736        186 IIEQGGALVSEFPLDTP-PLAANFPRRNRIISGLSKGVLVVEAALRSGS-LVTARCALEQGRDVFAL  250 (374)
T ss_pred             HHhcCCEEEECCCCCCC-CChhhhhHhhhHHHHhCCeEEEEEeCCCCch-HHHHHHHHHhCCeEEEE
Confidence            833     346665532 22333334688888888888776544 4554 66999999999987543

>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=95.38  E-value=0.41  Score=45.59  Aligned_cols=166  Identities=19%  Similarity=0.195  Sum_probs=118.8

Q ss_pred             cccccCCccccCCCCccchhhhcccceeeecccccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHH
Q 023334           88 IGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALV  167 (283)
Q Consensus        88 ~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALv  167 (283)
                      ..+++.+++   +-|..-..+-..|..+-.+.     ++|++.+         +.+||+|||+++-.-.+..+.++..|+
T Consensus        76 ~~~i~~~d~---~YP~~Lk~i~~pP~vLf~kG-----nl~ll~~---------~~vaIVGsR~~S~~g~~~~~~~a~~L~  138 (350)
T COG0758          76 IKIITLGDE---DYPKLLKEINDPPPVLFYKG-----NLDLLEA---------PSVAIVGSRKPSKYGLDYTRDLAEYLA  138 (350)
T ss_pred             CeEeccCCc---cchHHHHhccCCCeEEEEec-----CHhHhcc---------CceEEEeCCCCCHhHHHHHHHHHHHHH
Confidence            345555555   56776666655554444333     2344432         789999999999999999999999999


Q ss_pred             hhCCeeeecCCCCchHHHHHhhhhhcCCCceeE-eecccccCC-ChhHHHHHHHHhhH----hcCC-----CCCCCChHH
Q 023334          168 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLAKVKTV----IEKP-----HNDHLPLIE  236 (283)
Q Consensus       168 l~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTV-iLPQSL~kQ-p~ESqelLe~V~hl----VE~P-----eND~LpL~e  236 (283)
                      ..|--|++-+|-|.-+++-.+||.+.   -.|| ||.-.+++= |++-+.+.+++..-    =|.|     ..-+.|-  
T Consensus       139 ~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEypp~~~p~~~~Fp~--  213 (350)
T COG0758         139 QNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYPPDTEPNKGNFPR--  213 (350)
T ss_pred             hCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecCCCCCcccccchH--
Confidence            99999999999999999999999994   3465 667777764 66777777776542    1443     3334432  


Q ss_pred             HHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEE
Q 023334          237 ASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL  279 (283)
Q Consensus       237 AS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTL  279 (283)
                          =|+=|-.-++=+++.-.=.--==|-||+.|-+|++.|-.
T Consensus       214 ----RNRiIagLS~gvlVvEA~~kSGSLiTA~~AleqgR~Vfa  252 (350)
T COG0758         214 ----RNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQGRDVFA  252 (350)
T ss_pred             ----HHHHHHHhcCceEEEecCcccccHHHHHHHHHcCCeeEE
Confidence                377777788888887544333335689999999998753

>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain

Probab=95.29  E-value=0.28  Score=42.27  Aligned_cols=140  Identities=18%  Similarity=0.153  Sum_probs=74.0

Q ss_pred             ceEEEeccccc------------chhHHHHHHHHHHHHHhhCCeeeecCCCCchH--HHHHhhhhhcCCCc-eeEeeccc
Q 023334          141 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS  205 (283)
Q Consensus       141 rrIa~lGsRhv------------p~~hq~LIEllsyALvl~gNhi~TSGA~GTNA--AvIRGaLrAe~P~l-LTViLPQS  205 (283)
                      |+|+|-|-|..            .++-..|-+.+..++-.+=-++||+||-|+-.  |-+--.|+.+-|++ |.+++|= 
T Consensus         2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf-   80 (177)
T PF06908_consen    2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPF-   80 (177)
T ss_dssp             -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESS-
T ss_pred             eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcc-
Confidence            56777776644            22445555555555666677999999999864  44555677888865 6677773 


Q ss_pred             ccCC----ChhHHHHHHHHhhHhc---CCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchH-HHHHHHHHHhc----
Q 023334          206 LKKQ----PPESQELLAKVKTVIE---KPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL-LMETCQEAKNL----  273 (283)
Q Consensus       206 L~kQ----p~ESqelLe~V~hlVE---~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~t-LLetC~eAe~~----  273 (283)
                       +.|    +++.|+.+.+++.-..   .-.++.--=+..-+-.|+-+|.++|.+|++=--+.+- ---+++.|+.+    
T Consensus        81 -~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~~~  159 (177)
T PF06908_consen   81 -ENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQEQK  159 (177)
T ss_dssp             -B-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHHHH
T ss_pred             -cchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhhcc
Confidence             334    5688988888864322   1222212235666789999999999999987666531 12233444443    


Q ss_pred             cCeeEEeec
Q 023334          274 RKIVTLFYL  282 (283)
Q Consensus       274 ~KiVTLfYf  282 (283)
                      +..+.++-+
T Consensus       160 ~y~i~~I~~  168 (177)
T PF06908_consen  160 GYPIDLIDP  168 (177)
T ss_dssp             ---EEEE-H
T ss_pred             CCeEEEecH
Confidence            345555444

; PDB: 2NX2_A.

>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2

Probab=92.61  E-value=0.37  Score=41.17  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHhhCCeeeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 023334          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK  207 (283)
Q Consensus       141 rrIa~lGsRhvp~~--hq~LIEllsyALvl~gNhi~TSGA-~GTNAAvIRGaLrAe~P~lLTViLPQSL~  207 (283)
                      |+||++|+-..+.-  +.+..+-+.+.|+..|+.++|-|+ .|.=-||-|||+++. - ...=|+|+.|.
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g-G-~viGi~p~~l~   68 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG-G-TAVGVNPSGLF   68 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC-C-eEEEecchhhh
Confidence            58999988665433  445677789999999999999997 899999999998873 2 23347888774

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

>PRK13660 hypothetical protein; Provisional

Probab=91.06  E-value=10  Score=33.37  Aligned_cols=138  Identities=20%  Similarity=0.181  Sum_probs=87.2

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHhhCCeeeecCCCCch--HHHHHhhhhhcCCCc-eeEeeccc
Q 023334          141 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTN--AAVIRGALRAERPDL-LTVILPQS  205 (283)
Q Consensus       141 rrIa~lGsRhvp~------------~hq~LIEllsyALvl~gNhi~TSGA~GTN--AAvIRGaLrAe~P~l-LTViLPQS  205 (283)
                      ++++|-|-|...+            +-..|-+-|..++-.+=-++||+||-|+-  ||=+--.|+.+-|++ |-+++|=.
T Consensus         2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~   81 (182)
T PRK13660          2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE   81 (182)
T ss_pred             eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence            5788888888877            33333334444444555789999999986  455566678877886 66677732


Q ss_pred             c--cCCChhHHHHHHHHhhHhc---CCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchH---HHHHHHHHHhc----
Q 023334          206 L--KKQPPESQELLAKVKTVIE---KPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL---LMETCQEAKNL----  273 (283)
Q Consensus       206 L--~kQp~ESqelLe~V~hlVE---~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~t---LLetC~eAe~~----  273 (283)
                      =  ++=.++.|+.+.++++-+.   .=....-.=+.--+.=|+-+|.++|-+|+|  -|.+.   .--+.+.|+..    
T Consensus        82 ~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~--YD~e~~Ggt~y~~~~A~k~~~~~  159 (182)
T PRK13660         82 EHGENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLV--YDEENEGSPKYFYEAAKKKQEKE  159 (182)
T ss_pred             chhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEE--EcCCCCCChHHHHHHHHHhhhcc
Confidence            1  2336788888887755321   111111100333455699999999998875  45332   44677888877    


Q ss_pred             cCeeEEe
Q 023334          274 RKIVTLF  280 (283)
Q Consensus       274 ~KiVTLf  280 (283)
                      +.-|.++
T Consensus       160 ~y~i~~I  166 (182)
T PRK13660        160 DYPLDLI  166 (182)
T ss_pred             CceEEEe
Confidence            7766655

>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]

Probab=85.45  E-value=3.4  Score=36.35  Aligned_cols=73  Identities=33%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             HhcCCceEEEe-cccc--cchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 023334          136 QQQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  210 (283)
Q Consensus       136 Qq~G~rrIa~l-GsRh--vp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp  210 (283)
                      -+.|.+.|+++ ||.+  .+--..++-.-+.++++.-|.-|||-|..|+=.|+-|||+++  -...+=|+|.++..|-
T Consensus        10 ~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~e   85 (205)
T COG1611          10 LFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQE   85 (205)
T ss_pred             cccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhhc
Confidence            34567777765 4554  444356777788999999999999999999999999999965  3445557888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 45/355 (12%), Positives = 80/355 (22%), Gaps = 119/355 (33%)

Query: 7   MRLLLPLSSVSTTNATTPFFNSIDFPS-KFL--------KSPNPNFNFFASSSHPTQ--- 54
              L              F   +   + KFL        + P+     +           
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 55  ------HSWRARRTK--KTWLCGNMRKDQDMDGLRSEEENVI--GMFGS----------- 93
                 +  R +     +  L            LR  + NV+  G+ GS           
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE----------LRPAK-NVLIDGVLGSGKTWVALDVCL 172

Query: 94  DEDVGTQIPTQAQSVVEGSGAV----MVSEFKPVPDVDYLQELLA-----------IQQQ 138
              V  ++             +    + +   P   ++ LQ+LL                
Sbjct: 173 SYKVQCKMD----------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 139 GPRAIGFFGTRNMGFMHQE------LI-------EILSY------ALVITKNHIYTSGAS 179
               I          +  +      L+       +  +        L+ T+    T   S
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 180 GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEK--PH--NDHLPL- 234
                 I           LT          P E + LL K      +  P       P  
Sbjct: 283 AATTTHISLD---HHSMTLT----------PDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 235 ---IEASRLCNMDIISHVQQVICFAFHDSRLLMETC---QEAKNLRKIVTLFYLD 283
              I  S    +    + + V C        ++E+     E    RK     +  
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEPAEYRK----MFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	97.85
2iz6_A	176	Molybdenum cofactor carrier protein; metal transpo	97.42
3uqz_A	288	DNA processing protein DPRA; SAM and rossmann fold	97.29
2nx2_A	181	Hypothetical protein YPSA; structural genomics, un	97.28
1rcu_A	195	Conserved hypothetical protein VT76; structural ge	97.19
2a33_A	215	Hypothetical protein; structural genomics, protein	97.09
1weh_A	171	Conserved hypothetical protein TT1887; rossman fol	97.06
1wek_A	217	Hypothetical protein TT1465; rossman fold, structu	97.05
1t35_A	191	Hypothetical protein YVDD, putative lysine decarbo	97.02
3qua_A	199	Putative uncharacterized protein; structural genom	97.0
1ydh_A	216	AT5G11950; structural genomics, protein structure	96.39
3sbx_A	189	Putative uncharacterized protein; structural genom	96.37
3gh1_A	462	Predicted nucleotide-binding protein; structural g	93.15
3bq9_A	460	Predicted rossmann fold nucleotide-binding domain	92.27

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=97.85  E-value=0.00021  Score=66.40  Aligned_cols=133  Identities=21%  Similarity=0.161  Sum_probs=104.6

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHH
Q 023334          140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLA  218 (283)
Q Consensus       140 ~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQ-p~ESqelLe  218 (283)
                      .+.|||.|||++.---.+..+-+++.|+..|-.|++-+|-|+-+|+-||||.+ .   --.||+-.+++- |++.+++.+
T Consensus       127 ~~~vAIVGsR~~s~yG~~~a~~l~~~La~~g~~VVSGlA~GID~~AH~~AL~~-g---TIaVLg~Gld~~YP~~n~~L~~  202 (382)
T 3maj_A          127 RPMIAIVGSRNASGAGLKFAGQLAADLGAAGFVVISGLARGIDQAAHRASLSS-G---TVAVLAGGHDKIYPAEHEDLLL  202 (382)
T ss_dssp             SCEEEEECCSSCCHHHHHHHHHHHHHHHHHTCEEEECCCTTHHHHHHHHHTTT-C---EEEECSSCTTSCSSGGGHHHHH
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCcEEEeCCccCHHHHHHHHHHhC-C---eEEEECCCcCccCCHhhHHHHH
Confidence            57899999999999999999999999999998888888999999999999997 3   445889999985 889999999


Q ss_pred             HHhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEE-EeeCchHHHHHHHHHHhccCeeE
Q 023334          219 KVKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICF-AFHDSRLLMETCQEAKNLRKIVT  278 (283)
Q Consensus       219 ~V~h-----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICF-AFHDS~tLLetC~eAe~~~KiVT  278 (283)
                      ++..     +=|-|-+.. |...---.-|+=|..-++=+|.. |-..|-+ |-|++.|-+++|-|-
T Consensus       203 ~I~~~~G~liSE~ppg~~-p~~~~Fp~RNRiIagLS~~vvVvEA~~kSGs-liTA~~Ale~gR~Vf  266 (382)
T 3maj_A          203 DIIQTRGAAISEMPLGHV-PRGKDFPRRNRLISGASVGVAVIEAAYRSGS-LITARRAADQGREVF  266 (382)
T ss_dssp             HHHHTTCEEEECSCTTCC-CCTTHHHHHHHHHHHHCSCEEECCCCTTCTH-HHHHHHHHHHTCCEE
T ss_pred             HHHHhCCcEEecCCCCCC-CCccccHHHHHHHHHhCCceEEEecCCCCcH-HHHHHHHHHhCCcEE
Confidence            9854     224444332 33322335687777788877765 4556777 568999999998774

>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A

Probab=97.42  E-value=0.00043  Score=57.59  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=81.6

Q ss_pred             CCceEEEecccc--cchhHHHHHHHHHHHHHhhCCeeeecCC-CCchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 023334          139 GPRAIGFFGTRN--MGFMHQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE  215 (283)
Q Consensus       139 G~rrIa~lGsRh--vp~~hq~LIEllsyALvl~gNhi~TSGA-~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqe  215 (283)
                      ..++||++|||+  ..=-..+..+-+.+.|+..|..|+|=|+ .|.=.|+-|||+.+ .-.-+ =|||+. +++.+..- 
T Consensus        12 ~~~~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g~~lVsGGg~~Gim~aa~~gAl~~-gG~ti-gVlP~~-~~~~~~~~-   87 (176)
T 2iz6_A           12 RKPIIGVMGPGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEA-GGTTI-GVLPGP-DTSEISDA-   87 (176)
T ss_dssp             CCCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHT-TCCEE-EEECC------CCTT-
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHhHHHHHHHHHc-CCEEE-EEeCch-hhhhhccC-
Confidence            457899999999  6666788999999999999999999999 99999999999998 43333 357876 33221100 


Q ss_pred             HHHHHhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEEe
Q 023334          216 LLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLF  280 (283)
Q Consensus       216 lLe~V~hlVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTLf  280 (283)
                          +..++   .-++++      -=|+-|+..+|=+|.+-= -+-||-|.. +|-+++|-|-++
T Consensus        88 ----~~~~i---~~~~~~------~Rk~~m~~~sda~IvlpG-g~GTL~E~~-~al~~~kpV~~l  137 (176)
T 2iz6_A           88 ----VDIPI---VTGLGS------ARDNINALSSNVLVAVGM-GPGTAAEVA-LALKAKKPVVLL  137 (176)
T ss_dssp             ----CSEEE---ECCCCS------SSCCCCGGGCSEEEEESC-CHHHHHHHH-HHHHTTCCEEEE
T ss_pred             ----CceeE---EcCCHH------HHHHHHHHhCCEEEEecC-CccHHHHHH-HHHHhCCcEEEE
Confidence                00010   011121      125667777888887753 466765554 555677776554

>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae}

Probab=97.29  E-value=0.0042  Score=55.99  Aligned_cols=133  Identities=21%  Similarity=0.180  Sum_probs=97.2

Q ss_pred             CceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecC-CCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHH
Q 023334          140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELL  217 (283)
Q Consensus       140 ~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSG-A~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-Qp~ESqelL  217 (283)
                      .+.|||.|||++.---.+..+-++..|+ .| ..++|| |-|+-+++-||||.+..+  --.||+..|++ -|++.+++.
T Consensus       106 ~~~vaIVGsR~~s~yg~~~a~~l~~~La-~~-~~VVSGlA~GID~~AH~~aL~~~g~--TIaVl~~Gld~~YP~~n~~L~  181 (288)
T 3uqz_A          106 FPKVAVVGSRACSKQGAKSVEKVIQGLE-NE-LVIVSGLAKGIDTAAHMAALQNGGK--TIAVIGTGLDVFYPKANKRLQ  181 (288)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHHTTT-TC-SEEEECCCTTHHHHHHHHHHHHTCC--EEEECSSCTTCCSSGGGHHHH
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHHHHHh-hh-heEecCcccCHHHHHHHHHHhcCCC--EEEEecccccccCchhhHHHH
Confidence            3689999999999999999999999885 44 667777 689999999999998432  23479999987 477888887


Q ss_pred             HHHhh----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEE-EeeCchHHHHHHHHHHhccCeeE
Q 023334          218 AKVKT----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICF-AFHDSRLLMETCQEAKNLRKIVT  278 (283)
Q Consensus       218 e~V~h----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICF-AFHDS~tLLetC~eAe~~~KiVT  278 (283)
                      +++.+    +=|-|-+.. |...---.=|+=|-.-++=+|-. |=..|-+| -|++.|-+++|-|-
T Consensus       182 ~~i~~~GlliSE~ppg~~-p~~~~Fp~RNRiIagLS~~~vVvEA~~~SGsl-iTA~~Ale~gR~Vf  245 (288)
T 3uqz_A          182 DYIGNDHLVLSEYGPGEQ-PLKFHFPARNRIIAGLCRGVIVAEAKMRSGSL-ITCERAMEEGRDVF  245 (288)
T ss_dssp             HHHHHHSEEEESSCTTCC-CCTTHHHHHHHHHHHHCSEEEEESCCTTCHHH-HHHHHHHHTTCEEE
T ss_pred             HHhcccCcEeeccCCCCC-ccccccHHHHHHHHHcCCeEEEEecCCCChHH-HHHHHHHHcCCeEE
Confidence            77654    335554332 33332333477777777776655 44556665 69999999999764

>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2

Probab=97.28  E-value=0.0045  Score=51.32  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=88.8

Q ss_pred             ceEEEecccccch------------hHHHHHHHHHHHHHhhC-CeeeecCCCCchHHHHHhhhhh--cCC-CceeEeecc
Q 023334          141 RAIGFFGTRNMGF------------MHQELIEILSYALVITK-NHIYTSGASGTNAAVIRGALRA--ERP-DLLTVILPQ  204 (283)
Q Consensus       141 rrIa~lGsRhvp~------------~hq~LIEllsyALvl~g-Nhi~TSGA~GTNAAvIRGaLrA--e~P-~lLTViLPQ  204 (283)
                      ++|||-|-|..++            +-..|-+.|...+ -.| -+++|+||.|+=..+..-|+..  +-| =.|+|++|=
T Consensus         3 ~~i~vTGhR~~~l~if~~~~~~~~~ik~~L~~~l~~l~-~~G~~~~isgga~G~D~~aae~vl~lk~~y~~i~L~~v~Pf   81 (181)
T 2nx2_A            3 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFL-DEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPF   81 (181)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHH-TTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESS
T ss_pred             eEEEEEeCCCccccCccccchHHHHHHHHHHHHHHHHH-hCCCcEEEECCCccHHHHHHHHHHHhccccCCceEEEEecc
Confidence            6999999998873            2333333333333 245 6999999999999998888773  346 468999993


Q ss_pred             ccc--CCChhHHHHHHHHhhHhc----CCCCCCCChHHHHhhhhHHHHhhhceeeEEEe-eCchHHHHHHHHHHhc----
Q 023334          205 SLK--KQPPESQELLAKVKTVIE----KPHNDHLPLIEASRLCNMDIISHVQQVICFAF-HDSRLLMETCQEAKNL----  273 (283)
Q Consensus       205 SL~--kQp~ESqelLe~V~hlVE----~PeND~LpL~eAS~lCN~eIIsrcqQlICFAF-HDS~tLLetC~eAe~~----  273 (283)
                      .=-  +=+++.|+.+..++.-..    -++. +..=+.+-+.=|+-+|.+||-+|+|-- +-.----.+.+.|+++    
T Consensus        82 ~~~~~~w~~~~~~~y~~ll~~aD~v~~l~~~-~y~~~~~~~~rn~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~  160 (181)
T 2nx2_A           82 YEQEKNWKEPNKEQYEAVLAQADYEASLTHR-PYESPLQFKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQD  160 (181)
T ss_dssp             BCTTTTSCHHHHHHHHHHHHHCSEEEESSSS-BCCCHHHHHHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHH
T ss_pred             cchhhCCCHHHHHHHHHHHHhCCeEEecccC-CCCCHHHHHHHHHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhcccc
Confidence            322  226778877776655422    2221 111245666779999999999998853 1111233444555554    


Q ss_pred             cCeeEEeec
Q 023334          274 RKIVTLFYL  282 (283)
Q Consensus       274 ~KiVTLfYf  282 (283)
                      ++-|.++-+
T Consensus       161 ~~pv~~I~~  169 (181)
T 2nx2_A          161 GYPIYFITM  169 (181)
T ss_dssp             CCCEEEECH
T ss_pred             CCeEEEEcH
Confidence            577776644

>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1

Probab=97.19  E-value=0.0026  Score=53.84  Aligned_cols=119  Identities=16%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             CceEEEeccccc-ch----hHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 023334          140 PRAIGFFGTRNM-GF----MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ  214 (283)
Q Consensus       140 ~rrIa~lGsRhv-p~----~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESq  214 (283)
                      .++||++|+|+. .=    -..+..+-+.+.|+..|..|+|-|+.|.=.|+-|||+.+. -. ..-|||.  ++.+    
T Consensus        23 m~~IaV~Gss~~~~~~~~~~~~~~A~~lg~~LA~~G~~vVsGg~~GiM~aa~~gAl~~G-G~-~iGVlP~--e~~~----   94 (195)
T 1rcu_A           23 MKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREAG-GT-VVGILPD--EEAG----   94 (195)
T ss_dssp             CCEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHTT-CC-EEEEEST--TCCC----
T ss_pred             CCeEEEEecCCCCCccccHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHcC-Cc-EEEEeCC--cccC----
Confidence            468999999876 22    5678889999999999999999999999999999999983 33 3445787  2111    


Q ss_pred             HHHHHHhhHhcCCCCCCCChH--HHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEEe
Q 023334          215 ELLAKVKTVIEKPHNDHLPLI--EASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLF  280 (283)
Q Consensus       215 elLe~V~hlVE~PeND~LpL~--eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTLf  280 (283)
                                 ++. .++++.  .--..=|.-|+..+|=+|.+-= -+-||-|.. +|-.++|-|-++
T Consensus        95 -----------~~~-~~~~~~~~~~f~~Rk~~m~~~sda~IvlpG-G~GTL~E~~-eal~~~kPV~ll  148 (195)
T 1rcu_A           95 -----------NPY-LSVAVKTGLDFQMRSFVLLRNADVVVSIGG-EIGTAIEIL-GAYALGKPVILL  148 (195)
T ss_dssp             -----------CTT-CSEEEECCCCHHHHHHHHHTTCSEEEEESC-CHHHHHHHH-HHHHTTCCEEEE
T ss_pred             -----------CCC-cceeeecCCCHHHHHHHHHHhCCEEEEecC-CCcHHHHHH-HHHhcCCCEEEE
Confidence                       111 233322  1111237888999998888853 367766655 455577777666

>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A

Probab=97.09  E-value=0.00089  Score=57.12  Aligned_cols=114  Identities=20%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             cCCceEEEe-cccccch-hHHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 023334          138 QGPRAIGFF-GTRNMGF-MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ  214 (283)
Q Consensus       138 ~G~rrIa~l-GsRhvp~-~hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESq  214 (283)
                      ..-++||++ |||+..= -..+..+-+.+.|+..|..|+|-||. |.=.|+-|||+.+. -.- .=|||..+..  +|. 
T Consensus        11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~~GiM~aa~~gAl~~G-G~t-iGVlP~~~~~--~e~-   85 (215)
T 2a33_A           11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG-RHV-IGIIPKTLMP--REL-   85 (215)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTT-CCE-EEEEESSCC-------
T ss_pred             CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCChhhHhHHHHHHHHHcC-CcE-EEEcchHhcc--hhh-
Confidence            345689999 9999643 35788999999999999999999996 99999999999983 333 3347887754  111 


Q ss_pred             HHHHHHhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHH
Q 023334          215 ELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETC  267 (283)
Q Consensus       215 elLe~V~hlVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC  267 (283)
                        -.+  .+.|.+.-+++      .-=|.-|+..+|=+|++-= -.-||-|-.
T Consensus        86 --~~~--~~~~~~~~~~f------~~Rk~~~~~~sda~VvlpG-G~GTLdElf  127 (215)
T 2a33_A           86 --TGE--TVGEVRAVADM------HQRKAEMAKHSDAFIALPG-GYGTLEELL  127 (215)
T ss_dssp             --------CCEEEEESSH------HHHHHHHHHTCSEEEECSC-CHHHHHHHH
T ss_pred             --ccC--CCCceeecCCH------HHHHHHHHHhCCEEEEeCC-CCchHHHHH
Confidence              000  01122222222      1236667778887777642 244554444

>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.06  E-value=0.00089  Score=54.71  Aligned_cols=62  Identities=13%  Similarity=0.032  Sum_probs=53.3

Q ss_pred             ceEEEecccccch--hHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 023334          141 RAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ  204 (283)
Q Consensus       141 rrIa~lGsRhvp~--~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQ  204 (283)
                      |+||++|+|+.+-  -+.+..+-+.+.|+..|..|+|=|+.|.=.|+-|||+.+.. . ..=|+|.
T Consensus         2 ~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg~GiM~aa~~gAl~~gG-~-tiGV~~~   65 (171)
T 1weh_A            2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAKGG-L-VVGVTAP   65 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHTTC-C-EEECCCG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHcCC-c-EEEEecc
Confidence            5799999999987  67889999999999999999999999999999999999833 2 3334565

>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1

Probab=97.05  E-value=0.0019  Score=55.17  Aligned_cols=117  Identities=19%  Similarity=0.106  Sum_probs=78.4

Q ss_pred             HHhcCCceEEEecccccch--hHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChh
Q 023334          135 IQQQGPRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE  212 (283)
Q Consensus       135 IQq~G~rrIa~lGsRhvp~--~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~E  212 (283)
                      +..-|-+.||++|+|+.+-  -+.+..+-+.+.|+..|..|+|=|+.|.=.||-|||+.+ .-.-+-|+ |+ +   |.|
T Consensus        32 l~~~~~~~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~~lVsGGg~GiM~aa~~gAl~~-gG~~iGV~-~~-~---P~~  105 (217)
T 1wek_A           32 LSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSVGLN-IE-L---PHE  105 (217)
T ss_dssp             HHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEEEEE-EC-C---TTC
T ss_pred             HhhcCCCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChhhHHHHHHHHHHHc-CCCEEEEe-eC-C---cch
Confidence            4555656899999999986  667899999999999999999999999999999999998 43333332 32 1   221


Q ss_pred             HHHHHHHHhhHhcCCCCCCCChH---HHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHH
Q 023334          213 SQELLAKVKTVIEKPHNDHLPLI---EASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAK  271 (283)
Q Consensus       213 SqelLe~V~hlVE~PeND~LpL~---eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe  271 (283)
                                   ...|..++..   .--.-=|.-|+..+|=+|++- =-+-||-|-.+...
T Consensus       106 -------------~~~~~~~t~~~~~~~f~~Rk~~m~~~sda~Ivlp-GG~GTL~El~e~lt  153 (217)
T 1wek_A          106 -------------QKPNPYQTHALSLRYFFVRKVLFVRYAVGFVFLP-GGFGTLDELSEVLV  153 (217)
T ss_dssp             -------------CCCCSCCSEEEEESCHHHHHHHHHHTEEEEEECS-CCHHHHHHHHHHHH
T ss_pred             -------------hhccccCCcCcccCCHHHHHHHHHHhCCEEEEeC-CCCcHHHHHHHHHH
Confidence                         1122222211   001122666778888777765 34566666555443

>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1

Probab=97.02  E-value=0.0018  Score=53.92  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=75.7

Q ss_pred             ceEEEecccccc--hhHHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHH
Q 023334          141 RAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELL  217 (283)
Q Consensus       141 rrIa~lGsRhvp--~~hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelL  217 (283)
                      |+||++|+|+.+  =-+.+..+-+.+.|+..|..|+|-|+. |.=.|+-|||+.+. - ...=|+|..|...     +  
T Consensus         2 ~~V~V~gss~~~~~~~~~~~A~~lg~~La~~g~~lV~GGg~~GiM~aa~~gA~~~g-G-~~iGv~p~~l~~~-----e--   72 (191)
T 1t35_A            2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENG-G-TAIGVMPSGLFSG-----E--   72 (191)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTTT-C-CEEEEEETTCCHH-----H--
T ss_pred             CEEEEEECCCCCCChHHHHHHHHHHHHHHHCCCEEEECCCcccHHHHHHHHHHHcC-C-eEEEEeCchhccc-----c--
Confidence            689999999974  456778999999999999999999997 99999999999983 3 3444678877621     1  


Q ss_pred             HHHhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHH
Q 023334          218 AKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEA  270 (283)
Q Consensus       218 e~V~hlVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eA  270 (283)
                            +.++.-+.+....--..=|.-++..+|=+|++-= -.=||-|-.+..
T Consensus        73 ------~~~~~~~~~~~~~~~~~Rk~~~~~~sda~IvlPG-G~GTl~El~e~l  118 (191)
T 1t35_A           73 ------VVHQNLTELIEVNGMHERKAKMSELADGFISMPG-GFGTYEELFEVL  118 (191)
T ss_dssp             ------HTTCCCSEEEEESHHHHHHHHHHHHCSEEEECSC-CHHHHHHHHHHH
T ss_pred             ------cccCCCCccccCCCHHHHHHHHHHHCCEEEEeCC-CccHHHHHHHHH
Confidence                  0111111111111112236677788887776642 245665555544

>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}

Probab=97.00  E-value=0.0022  Score=54.49  Aligned_cols=68  Identities=13%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             cCCceEEEe-cccccchhHHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 023334          138 QGPRAIGFF-GTRNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (283)
Q Consensus       138 ~G~rrIa~l-GsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~  207 (283)
                      .+.++||++ |+|...--+.+..+-+.+.|+..|..|+|-|+. |.=.||-|||+++.  -...-|+|+.|.
T Consensus        20 ~~~~~v~Vfggs~~~~~~~~~~A~~lg~~La~~g~~lV~GGG~~GlM~a~~~gA~~~G--G~viGv~p~~l~   89 (199)
T 3qua_A           20 DRQWAVCVYCASGPTHPELLELAAEVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKG--GHTVGVIPKALV   89 (199)
T ss_dssp             -CCCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHHTT--CCEEEEEEGGGT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC--CcEEEEeCchhh
Confidence            567899999 578666677788899999999999999999986 99999999999883  244557888874

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=96.39  E-value=0.0087  Score=51.15  Aligned_cols=124  Identities=18%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             CCceEEEe-cccccc-hhHHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 023334          139 GPRAIGFF-GTRNMG-FMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE  215 (283)
Q Consensus       139 G~rrIa~l-GsRhvp-~~hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqe  215 (283)
                      .-++||++ |+|... =-+.+.-+-+.+.|+..|..|+|-|+. |.=.||-|||+.+..  ...=|+|..+..       
T Consensus         8 ~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG--~~iGv~p~~l~~-------   78 (216)
T 1ydh_A            8 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGL--HVLGIIPKALMP-------   78 (216)
T ss_dssp             SCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTC--CEEEEEEGGGHH-------
T ss_pred             CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCC--cEEEEechhcCc-------
Confidence            34689999 678753 456778888999999999999999997 999999999999833  344456765421       


Q ss_pred             HHHHHhhHhcCCCCCC--CChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHH-----HhccCeeEEe
Q 023334          216 LLAKVKTVIEKPHNDH--LPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEA-----KNLRKIVTLF  280 (283)
Q Consensus       216 lLe~V~hlVE~PeND~--LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eA-----e~~~KiVTLf  280 (283)
                              .|.+.|..  +....--..=|.-++.++|=+|++-= -.=||-|-.+..     ...+|-|-|+
T Consensus        79 --------~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~I~lpG-G~GTLdElfE~lt~~qlg~~~kPvvll  141 (216)
T 1ydh_A           79 --------IEISGETVGDVRVVADMHERKAAMAQEAEAFIALPG-GYGTMEELLEMITWSQLGIHKKTVGLL  141 (216)
T ss_dssp             --------HHCCSSCCSEEEEESSHHHHHHHHHHHCSEEEECSC-SHHHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             --------cccccCCCCcccccCCHHHHHHHHHHhCCEEEEeCC-CccHHHHHHHHHHHHHhcccCCCEEEe
Confidence                    12233321  11111112336777888887777642 134444433221     1245555554

>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}

Probab=96.37  E-value=0.013  Score=49.50  Aligned_cols=70  Identities=14%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             HhcCCceEEEecc-cccchhHHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 023334          136 QQQGPRAIGFFGT-RNMGFMHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (283)
Q Consensus       136 Qq~G~rrIa~lGs-Rhvp~~hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~  207 (283)
                      -..|.++||++|+ |...=-+.+.-+-+.+.|+..|+.|+|-|+. |.=.||-|||+.+. - ...=|+|+.|.
T Consensus         9 ~~~~~~~I~Vfg~s~~~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~G-G-~viGv~p~~l~   80 (189)
T 3sbx_A            9 DEPGRWTVAVYCAAAPTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAHG-G-WTVGVIPKMLV   80 (189)
T ss_dssp             ----CCEEEEECCSSCCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTT-C-CEEEEEETTTT
T ss_pred             CCCCCeEEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcC-C-cEEEEcCchhh
Confidence            3467899999985 5344455678888999999999999999987 99999999999883 2 34456788764

>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A

Probab=93.15  E-value=0.3  Score=47.21  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=55.6

Q ss_pred             hcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhc------CCCceeEeecccc
Q 023334          137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE------RPDLLTVILPQSL  206 (283)
Q Consensus       137 q~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe------~P~lLTViLPQSL  206 (283)
                      ...++.+.++||....=-+-+..+-+.++|+..|..|+|-|+.|.=-|+.+||..+.      .-..+-| +|+.|
T Consensus       144 ~r~~~IvV~cGSs~~~p~yye~A~eLGr~LA~~G~~LVtGGG~GLMeAa~aGA~~a~a~qr~aGG~vIGI-iP~~L  218 (462)
T 3gh1_A          144 GATPNLVVCWGGHSINEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGL-TEPSI  218 (462)
T ss_dssp             TCCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCTTCCEEEE-ECTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcHHHHHHHHHHHHHhccccccCCCeEEEE-ccchh
Confidence            356666779999887778888899999999999999999999999999999998874      3334444 56654

>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}

Probab=92.27  E-value=0.51  Score=45.46  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh------cCCCceeEeeccccc
Q 023334          138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA------ERPDLLTVILPQSLK  207 (283)
Q Consensus       138 ~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA------e~P~lLTViLPQSL~  207 (283)
                      ..++.++++|+....=-.-+..+-+.+.|+..|..|+|-|+.|.=-|+++||..+      ..-..+= |+|+.|.
T Consensus       143 ~~~~ivVv~GSs~~~~~~Ye~A~eLGr~LA~~G~~LVtGGG~GlMEaa~aGA~~a~s~qr~~GG~vIG-IiP~~L~  217 (460)
T 3bq9_A          143 EEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLG-LTEPGII  217 (460)
T ss_dssp             CCSCEEEEECCSSCCHHHHHHHHHHHHHHHHTTCEEEECCSSGGGTHHHHHHHHHHHHTTCSSCCEEE-EECTTTT
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHHHHHHHCCCEEEeCCcHHHhhHHHhhHHhhcccccCCCCEEEE-EeChhhh
Confidence            4456788999987654445788889999999999999999999998889999877      2333344 4576643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d2nx2a1	177	Hypothetical protein YpsA {Bacillus subtilis [TaxI	97.07
d1weha_	171	Hypothetical protein TT1887 (TTHA0294) {Thermus th	96.93
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	96.79
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	96.55
d1rcua_	170	Hypothetical protein TM1055 {Thermotoga maritima [	96.36
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	96.31
d1weka_	208	Hypothetical protein TT1465 (TTHA1644) {Thermus th	96.23

>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: YpsA-like
domain: Hypothetical protein YpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.0036  Score=50.37  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             ceEEEecccccc------------hhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhh--hcCCC-ceeEeec--
Q 023334          141 RAIGFFGTRNMG------------FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR--AERPD-LLTVILP--  203 (283)
Q Consensus       141 rrIa~lGsRhvp------------~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLr--Ae~P~-lLTViLP--  203 (283)
                      |+|||-|-|...            ++-..|-+.+...+...=..++|+||-|+---+..-||.  .+-|+ .|.|+||  
T Consensus         2 k~i~vTGhR~~elg~f~~~~p~~~~Ik~~l~~~l~~l~e~G~~~~i~g~alG~D~~aAevvl~lk~~yp~ikL~~~lPf~   81 (177)
T d2nx2a1           2 KVLAITGYKPFELGIFKQDDKALYYIKKAIKNRLIAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPDLKVAVITPFY   81 (177)
T ss_dssp             CEEEEEECCHHHHTCCSSCCHHHHHHHHHHHHHHHHHHTTTCCEEEECCCTTHHHHHHHHHHTTTTTCTTCEEEEEESSB
T ss_pred             cEEEEecCCCcccCCCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHHHHhhhCCCceEEEEeccc
Confidence            688888888432            334455555655556666789999999998766666655  44566 4889999  


Q ss_pred             -ccccCCChhHHHHHHHHhhHh-------cCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCch---HHHHHHHHHHh
Q 023334          204 -QSLKKQPPESQELLAKVKTVI-------EKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSR---LLMETCQEAKN  272 (283)
Q Consensus       204 -QSL~kQp~ESqelLe~V~hlV-------E~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~---tLLetC~eAe~  272 (283)
                       |+ ++-+++.|+.+.+++.-.       +.|..+    +.+-+-=|+-+|.+||-+|.+  -|.+   ---.+.+.|++
T Consensus        82 ~~~-~~w~e~~~~~y~~ll~~aD~v~~vs~~~y~~----~~q~~~rn~~mvd~sd~liav--yD~e~~Ggt~~~v~~A~k  154 (177)
T d2nx2a1          82 EQE-KNWKEPNKEQYEAVLAQADYEASLTHRPYES----PLQFKQKNQFFIDKSDGLLLL--YDPEKEGSPKYMLGTAEK  154 (177)
T ss_dssp             CTT-TTSCHHHHHHHHHHHHHCSEEEESSSSBCCC----HHHHHHHHHHHHHHSSEEEEE--CCTTTCCTTHHHHHHHHH
T ss_pred             ccc-cCCCHHHHHHHHHHHhhCCEEEEeccCCCCC----HHHHHHHHHHHHHhcCeEEEE--EeCCCCCCHHHHHHHHHH
Confidence             87 688999999888876532       333222    334455699999999999863  3322   12334455544


Q ss_pred             ----ccCeeEEe
Q 023334          273 ----LRKIVTLF  280 (283)
Q Consensus       273 ----~~KiVTLf  280 (283)
                          .++-|.++
T Consensus       155 ~~~~~~~~i~~I  166 (177)
T d2nx2a1         155 RREQDGYPIYFI  166 (177)
T ss_dssp             HHHHHCCCEEEE
T ss_pred             HHhccCCcEEEE
Confidence                34555554

>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1887 (TTHA0294)
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.0009  Score=53.23  Aligned_cols=66  Identities=15%  Similarity=0.077  Sum_probs=56.4

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeeccccc
Q 023334          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLK  207 (283)
Q Consensus       141 rrIa~lGsRhvp~~--hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~  207 (283)
                      |.||+||+...+--  ..+..+-+.++|+..|+.++|=|+.|.=.|+-|||.++ .-..+=|+.|+.+.
T Consensus         2 k~V~Vfgss~~~~~~~~~~~a~~lG~~la~~g~~lv~GGg~G~M~a~a~ga~~~-gG~~iGv~~~~~l~   69 (171)
T d1weha_           2 RLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGMEALARGVKAK-GGLVVGVTAPAFFP   69 (171)
T ss_dssp             EEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSSTHHHHHHHHHHHT-TCCEEECCCGGGCT
T ss_pred             CEEEEEecCCCCCCCHHHHHHHHHHHHHHHCCCceeeCcchHHHHHHHHHHHhc-cCceeeeeeccccc
Confidence            67999999987655  34667779999999999999999999999999999999 66677777787764

>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At2g37210/T2N18.3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.79  E-value=0.0018  Score=51.51  Aligned_cols=68  Identities=22%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             cCCceEEEecccccchh--HHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 023334          138 QGPRAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (283)
Q Consensus       138 ~G~rrIa~lGsRhvp~~--hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~  207 (283)
                      .--|+||+||+-..+--  +.+..+-|++.|+..|+.|+|.|+. |.=.|+-+||..+ . .....|.|..+.
T Consensus         4 ~~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~la~~g~~lV~GGG~~GlMga~a~ga~~~-g-g~v~Gi~~~~l~   74 (183)
T d2q4oa1           4 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDG-G-RHVIGIIPKTLM   74 (183)
T ss_dssp             CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-T-CCEEEEEETTCC
T ss_pred             cCCceEEEECcCCCCcCCHHHHHHHHHHHHHHHcCCeEEECCCCcchHHHHHHHHHhc-C-Cccccccccccc
Confidence            34589999986555443  4677788999999999999999986 9999999999987 4 445556666654

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=96.55  E-value=0.0015  Score=51.53  Aligned_cols=65  Identities=14%  Similarity=0.135  Sum_probs=50.9

Q ss_pred             ceEEEecccccchh--HHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeeccccc
Q 023334          141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSLK  207 (283)
Q Consensus       141 rrIa~lGsRhvp~~--hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL~  207 (283)
                      |+||+||+-..+.-  +.+..+-|++.|+..|+.|+|.|+. |.=.|+-|||..+ .-. .+-|.|..|.
T Consensus         2 k~v~VF~~s~~~~~~~~~~~a~~lg~~la~~g~~lv~GGG~~GlMga~a~ga~~~-gg~-v~gv~~~~l~   69 (179)
T d1t35a_           2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMEN-GGT-AIGVMPSGLF   69 (179)
T ss_dssp             CEEEEECCSSCCSSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHTT-TCC-EEEEEETTCC
T ss_pred             CEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHhcchhhc-CCc-eeccccchhh
Confidence            78999986554443  4688889999999999999999975 9999999999987 444 4445666553

>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TM1055
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.0062  Score=47.62  Aligned_cols=114  Identities=19%  Similarity=0.232  Sum_probs=79.7

Q ss_pred             ceEEEecc----cccch-hHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHH
Q 023334          141 RAIGFFGT----RNMGF-MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQE  215 (283)
Q Consensus       141 rrIa~lGs----Rhvp~-~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqe  215 (283)
                      |||+++|+    ..-|. =..++-+-|.+.||..|+.|||-|..|.=.||-|||..+ .-..+- |||..          
T Consensus         2 k~v~v~~~~~~~~~~p~~~~~~~a~~lG~~la~~g~~V~~GG~~GlM~ava~ga~~~-gg~viG-ilP~~----------   69 (170)
T d1rcua_           2 KKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFNGGRDGVMELVSQGVREA-GGTVVG-ILPDE----------   69 (170)
T ss_dssp             CEEEEEECCSCTTSTTTGGGHHHHHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHT-TCCEEE-EESTT----------
T ss_pred             ceEEEEEEecCCCCCcchHHHHHHHHHHHHHHHCCCEEECCCccCHHHHHHHHHHhc-CCcccc-ccchh----------
Confidence            78888876    12333 478888889999999999999999999999999999998 444444 57842          


Q ss_pred             HHHHHhhHhcCCCCCCCC------hHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEEe
Q 023334          216 LLAKVKTVIEKPHNDHLP------LIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLF  280 (283)
Q Consensus       216 lLe~V~hlVE~PeND~Lp------L~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTLf  280 (283)
                                .+.|+++.      ...+.|  +..++..+|=+|++. ==.-||-|-+ +|-.++|-|-++
T Consensus        70 ----------~~~n~~~~~~i~~~~~~~~R--k~~m~~~sda~I~lP-GG~GTl~El~-~a~~l~KPiill  126 (170)
T d1rcua_          70 ----------EAGNPYLSVAVKTGLDFQMR--SFVLLRNADVVVSIG-GEIGTAIEIL-GAYALGKPVILL  126 (170)
T ss_dssp             ----------CCCCTTCSEEEECCCCHHHH--HHHHHTTCSEEEEES-CCHHHHHHHH-HHHHTTCCEEEE
T ss_pred             ----------hccCcccceeEEeccchhhh--HHHHhhcccceeeec-cccchHHHHH-HHHHhCCceEEe
Confidence                      12222221      234445  667788899888765 2356766655 466777777665

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.0034  Score=49.71  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=50.0

Q ss_pred             CceEEEecccccch--hHHHHHHHHHHHHHhhCCeeeecCCC-CchHHHHHhhhhhcCCCceeEeecccc
Q 023334          140 PRAIGFFGTRNMGF--MHQELIEILSYALVITKNHIYTSGAS-GTNAAVIRGALRAERPDLLTVILPQSL  206 (283)
Q Consensus       140 ~rrIa~lGsRhvp~--~hq~LIEllsyALvl~gNhi~TSGA~-GTNAAvIRGaLrAe~P~lLTViLPQSL  206 (283)
                      -|+||+||+-+.+-  -+.+..+-|++.|+..|+.++|.|+. |.=.|+-|||..+ .-..+=| .|+.|
T Consensus         2 ~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~-gg~viGv-~~~~l   69 (181)
T d1ydhb_           2 FRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEG-GLHVLGI-IPKAL   69 (181)
T ss_dssp             CSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHT-TCCEEEE-EEGGG
T ss_pred             CcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhc-CCccccc-chhhh
Confidence            38999998655543  33567778899999999999999876 9999999999998 5444444 44433

>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein TT1465 (TTHA1644)
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.012  Score=47.85  Aligned_cols=76  Identities=24%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             HHHHhcCCceEEEecccccchhH--HHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 023334          133 LAIQQQGPRAIGFFGTRNMGFMH--QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP  210 (283)
Q Consensus       133 aaIQq~G~rrIa~lGsRhvp~~h--q~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp  210 (283)
                      .++-..+.+.||+||+...+--+  .+..+-|.+.|+..|+.|+|=|+.|.=-||-|||+.+ .-... =|.|..+..++
T Consensus        26 ~~~~~~~~~~V~Vfgsa~~~~~~~~y~~A~~LG~~La~~g~~lv~GGg~GlMgava~ga~~~-gG~vi-Gi~~~~~~~~~  103 (208)
T d1weka_          26 ETLSELQVPLVSVFGSARFGEGHPAYEAGYRLGRALAEAGFGVVTGGGPGVMEAVNRGAYEA-GGVSV-GLNIELPHEQK  103 (208)
T ss_dssp             HHHHHCCSCEEEEECCSSCCTTSHHHHHHHHHHHHHHHHTCEEEECSCSHHHHHHHHHHHHT-TCCEE-EEEECCTTCCC
T ss_pred             HHHhhcCCCeEEEECCCCCCCcChHHHHHHHHHHHHHhCcceEEeCCCchHHHHHHhhhhhc-CCcee-ccccccccccc
Confidence            34666678899999999876532  4667789999999999999999999999999999999 44333 35566665554