Citrus Sinensis ID: 023346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccEEcccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHcccccccccccEEccccccccccEEEEEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEcccEEEcccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHEEcccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEccccccHHHHccHEEccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHccccccccEccccEEEcc
Coil and Loop (DISEMBL)
MGFVCAIVEALLVVVVIILFGLISAIIFEAYrrrdnhahieapaifedpsslkqvpcpsvtdpaEKYISLIIpafneehrlpgalDETLNYLQQRAAKDKSFTYEVLIIddgssdgtkrVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLdadgatkvtdlEKLESQIHAVgrkeynhgdsvtvdstfrisdipiaafgsraHLEEKALATvqycdcprcfiCIFLFLCFSFTFHCLVEILHLISeevvpqffdegfpsccyldcwswns
Flexible Loop (DISEMBL)
MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEapaifedpsslkQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIiddgssdgtkrVAFDfvrkytvdnvriillgrnhgkgeaiRKGMLHSRGELLLMLDADGATKVTDLEKLESQIhavgrkeynhgdsvtvdstfRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Low Complexity Region (SEG)
MGFvcaiveallvvvviilfgliSAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRcficiflflcfsftfhclVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Disordered region (IsUnstruct)
**FVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFE*******VPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSW**
Disordered Region (DISOPRED)
MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHI************************EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Disordered Region (DISEMBL)
MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Disordered Region (DISPRO)
MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR*****************SDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Transmembrane Helix (TMHMM)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVPQFFDEGFPSCCYLDCWSWNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9Y673	324	Dolichyl-phosphate beta-g	yes	no	0.664	0.580	0.423	1e-36
Q9DB25	324	Dolichyl-phosphate beta-g	yes	no	0.600	0.524	0.431	8e-36
Q54J42	327	Dolichyl-phosphate beta-g	yes	no	0.660	0.571	0.328	1e-27
P40350	334	Dolichyl-phosphate beta-g	yes	no	0.593	0.502	0.331	1e-19
O60061	322	Dolichyl-phosphate beta-g	yes	no	0.650	0.571	0.321	1e-17
B5XTK8	327	Undecaprenyl-phosphate 4-	yes	no	0.459	0.397	0.335	7e-11
A6TF99	327	Undecaprenyl-phosphate 4-	yes	no	0.459	0.397	0.328	1e-10
B4ETL6	326	Undecaprenyl-phosphate 4-	yes	no	0.427	0.371	0.312	3e-10
B7N5L9	322	Undecaprenyl-phosphate 4-	yes	no	0.427	0.375	0.340	4e-10
Q57M56	327	Undecaprenyl-phosphate 4-	yes	no	0.508	0.440	0.298	4e-10

>sp|Q9Y673|ALG5_HUMAN Dolichyl-phosphate beta-glucosyltransferase OS=Homo sapiens GN=ALG5 PE=1 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 20/208 (9%)

Query: 37  HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
           H H E    F +    K+   PS+ D   K +S+++P++NEE RLP  +DE L+YL++R 
Sbjct: 38  HRH-EEEKFFLNAKGQKET-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALSYLEKRQ 95

Query: 97  AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
            +D +FTYEV+++DDGS D T +VAF + +KY  D VR+I L +N GKG AIR G+  SR
Sbjct: 96  KRDPAFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGIFSSR 155

Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
           GE +LM DADGATK  D+EKLE  ++               D     + + IA  GSRAH
Sbjct: 156 GEKILMADADGATKFPDVEKLEKGLN---------------DLQPWPNQMAIAC-GSRAH 199

Query: 217 LEEKALATVQYCDCPRCFICIFL--FLC 242
           LE++++A   Y      +   FL  FLC
Sbjct: 200 LEKESIAQRSYFRTLLMYGFHFLVWFLC 227

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 1EC: 7

>sp|Q9DB25|ALG5_MOUSE Dolichyl-phosphate beta-glucosyltransferase OS=Mus musculus GN=Alg5 PE=2 SV=1

 Score =  150 bits (380), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 115/197 (58%), Gaps = 27/197 (13%)

Query: 58  PSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT 117
           PS+ D   K +S+++P++NEE RLP  +DE LNYL++R   D +FTYEV+++DDGS D T
Sbjct: 57  PSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALNYLEKRQKHDCTFTYEVIVVDDGSEDQT 116

Query: 118 KRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
            +VA  + +KY  D VR+I L RN GKG A+R G+  SRGE +LM DADGATK  D+EKL
Sbjct: 117 SKVALKYCQKYGSDKVRVITLVRNRGKGGAVRMGVFSSRGEKILMADADGATKFPDVEKL 176

Query: 178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICI 237
           E  +                D       + IA  GSRAHLE++++A        R +   
Sbjct: 177 EKGLS---------------DLQPWPEQMAIAC-GSRAHLEKESIAQ-------RSYFRT 213

Query: 238 FLFLCFSFTFHCLVEIL 254
           FL     + FH LV  L
Sbjct: 214 FLM----YGFHFLVWFL 226

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 7

>sp|Q54J42|ALG5_DICDI Dolichyl-phosphate beta-glucosyltransferase OS=Dictyostelium discoideum GN=alg5 PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 32/219 (14%)

Query: 40  IEAPAIFEDPSSLKQVPCPSVT---DPAEK-YISLIIPAFNEEHRLPGALDETLNYLQQR 95
           +E   ++ D    +Q   PS+    +P +  Y+S+I+PA+NE+ RLP  LD+ + +L ++
Sbjct: 44  LEKENVYIDVKEGEQHQFPSLVENKNPIDNIYLSVIVPAYNEQIRLPSMLDDAIKFLNEK 103

Query: 96  AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155
           + KD  F+YE++IIDDGS D T ++   ++ K    N+R++ L +N GKG A+++G+L S
Sbjct: 104 SKKDLKFSYEIIIIDDGSKDSTAKLVTSYIEKQPSSNIRLLKLKQNRGKGGAVKRGILCS 163

Query: 156 RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRA 215
           RG+  LM+DADGAT+  D  ++E  +H + +                 +D+ I   GSR+
Sbjct: 164 RGKYCLMVDADGATEFKDFNRVEDIMHKIEK-----------------NDLGIVC-GSRS 205

Query: 216 HLEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEIL 254
           HL +  L         R F+   L     + FH  V+ L
Sbjct: 206 HLVDSDLV------AKRSFLRNILM----YGFHIFVQTL 234

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 7

>sp|P40350|ALG5_YEAST Dolichyl-phosphate beta-glucosyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALG5 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 19/187 (10%)

Query: 62  DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVA 121
           D  E ++S++IP++NE  R+   L + +++L+++        +E++I+DDGS+D T +  
Sbjct: 69  DDEEIFLSVVIPSYNETGRILLMLTDAISFLKEKYGS----RWEIVIVDDGSTDNTTQYC 124

Query: 122 FDFVR---KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLE 178
               +   K   +  RII   +N GKG A+R+G LH RG+  L  DADGA+K +D+EKL 
Sbjct: 125 LKICKEQFKLNYEQFRIIKFSQNRGKGGAVRQGFLHIRGKYGLFADADGASKFSDVEKL- 183

Query: 179 SQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIF 238
             I A+ + E +  D  T          P  A GSRAH+     A ++      C +  F
Sbjct: 184 --IDAISKIETSSTDLKTTK--------PAVAIGSRAHMVNTE-AVIKRSMIRNCLMYGF 232

Query: 239 LFLCFSF 245
             L F F
Sbjct: 233 HTLVFIF 239

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 7

>sp|O60061|ALG5_SCHPO Dolichyl-phosphate beta-glucosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alg5 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 34/218 (15%)

Query: 41  EAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK 100
           E   +F +    K +     +      I++I+PA+NE  R+   L ET+++L++      
Sbjct: 37  EETCVFIENGQKKSLTLEKWSTSDNIQITVIVPAYNESKRIGNMLQETVDHLEKYYRSSS 96

Query: 101 SF---TYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGRNHGKGEAIRKGMLHSR 156
           S     +E+LI+DD S D T     +F  K  + D++R+  L RN GKG A+  GML++R
Sbjct: 97  SAGQRRWEILIVDDESKDTTVNAVLEFSNKLDLRDHLRVCSLKRNRGKGGAVTWGMLYAR 156

Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
           G+  +  DADGA++ +DLE L   +    R     G  V                GSRAH
Sbjct: 157 GQYAIFADADGASQFSDLELLFKNMPPGPR-----GGVVV---------------GSRAH 196

Query: 217 LEEKALATVQYCDCPRCFICIFLFLCFSFTFHCLVEIL 254
           +   A A V+     R FI  FL  C    FH L++IL
Sbjct: 197 MVNTA-AVVK-----RSFIRNFLMHC----FHKLLQIL 224

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 7

>sp|B5XTK8|ARNC_KLEP3 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Klebsiella pneumoniae (strain 342) GN=arnC PE=3 SV=1

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 60  VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
           +T P  K +S++IP +NE+  LP  L  T       A       YE+L+IDDGSSD + R
Sbjct: 2   LTYPPVKKVSVVIPVYNEQDSLPELLRRT-----DTACATLGRQYEILLIDDGSSDDSAR 56

Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDL----E 175
           +  +        +V  +LL RN+G+  AI  G  H  G+L++ LDAD      ++    E
Sbjct: 57  MLTEAAEAEG-SHVVAVLLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVE 115

Query: 176 KLESQIHAVGRKEYNHGDSV 195
           K +     VG    N  DS+
Sbjct: 116 KADEGYDVVGTVRQNRQDSI 135

Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 2

EC: .

EC: 7

EC: .

EC: 8

EC: .

EC: 3

EC: 0

>sp|A6TF99|ARNC_KLEP7 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnC PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 60  VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
           +T P  K +S++IP +NE+  LP  L  T       A       YE+L+IDDGSSD + R
Sbjct: 2   LTYPPVKKVSVVIPVYNEQDSLPELLRRT-----DAACATLGRQYEILLIDDGSSDDSAR 56

Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179
           +  +        +V  +LL RN+G+  AI  G  H  G+L++ LDAD      ++ +L +
Sbjct: 57  MLTEAAEAEG-SHVVAVLLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVA 115

Query: 180 QI----HAVGRKEYNHGDSV 195
           +       VG    N  DS+
Sbjct: 116 KADEGYDVVGTVRQNRQDSI 135

Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 2

EC: .

EC: 7

EC: .

EC: 8

EC: .

EC: 3

EC: 0

>sp|B4ETL6|ARNC_PROMH Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Proteus mirabilis (strain HI4320) GN=arnC PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S++IP +NEE  LP  L+ T+     ++ K     YE++++DDGSSD + ++  +    
Sbjct: 10  VSVVIPVYNEEESLPQLLERTI-----KSCKQLEQEYELILVDDGSSDNSAKM-LEEAAN 63

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL----ESQIHA 183
              ++V  I+L RN+G+  AI  G   + G+L++ LDAD      ++ +L    E     
Sbjct: 64  IEDNHVIAIILNRNYGQHSAIMAGFNQADGDLVITLDADLQNPPEEIPRLVATAEEGYDV 123

Query: 184 VGRKEYNHGDS 194
           VG +  N  DS
Sbjct: 124 VGTRRRNRQDS 134

Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Proteus mirabilis (strain HI4320) (taxid: 529507)

EC: 2

EC: .

EC: 7

EC: .

EC: 8

EC: .

EC: 3

EC: 0

>sp|B7N5L9|ARNC_ECOLU Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=arnC PE=3 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 66  KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV 125
           K +S++IP +NE+  LP  +  T      +A +     YE+L+IDDGSSD +   A   V
Sbjct: 8   KKVSVVIPVYNEQESLPELIRRT-----TKACESLGKEYEILLIDDGSSDNS---AHMLV 59

Query: 126 RKYTVDNVRI--ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ--- 180
                +N  I  ILL RN+G+  AI  G  H  G+L++ LDAD      ++ +L ++   
Sbjct: 60  EASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE 119

Query: 181 -IHAVGRKEYNHGDS 194
               VG    N  DS
Sbjct: 120 GYDVVGTVRQNRQDS 134

Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) (taxid: 585056)

EC: 2

EC: .

EC: 7

EC: .

EC: 8

EC: .

EC: 3

EC: 0

>sp|Q57M56|ARNC_SALCH Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Salmonella choleraesuis (strain SC-B67) GN=arnC PE=3 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 66  KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV 125
           K +S++IP +NE+  LP  +  T       A +  S  +E+L+IDDGSSD +  +     
Sbjct: 8   KKVSVVIPVYNEQESLPELIRRTTT-----ACESLSKAWEILLIDDGSSDSSAELMVKAS 62

Query: 126 RKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ----I 181
           ++    ++  ILL RN+G+  AI  G  H  G+L++ LDAD      ++ +L ++     
Sbjct: 63  QEAD-SHIISILLNRNYGQHAAIMAGFSHVSGDLIITLDADLQNPPEEIPRLVAKADEGF 121

Query: 182 HAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRA 215
             VG    N  DS+   S  +I ++ I     +A
Sbjct: 122 DVVGTVRQNRQDSLFRKSASKIINLLIQRTTGKA 155

Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Salmonella choleraesuis (strain SC-B67) (taxid: 321314)

EC: 2

EC: .

EC: 7

EC: .

EC: 8

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224100983	335	predicted protein [Populus trichocarpa]	0.802	0.677	0.775	1e-101
224109522	335	predicted protein [Populus trichocarpa]	0.802	0.677	0.766	4e-99
225449525	336	PREDICTED: dolichyl-phosphate beta-gluco	0.802	0.675	0.754	3e-97
356499640	333	PREDICTED: dolichyl-phosphate beta-gluco	0.787	0.669	0.748	7e-96
255580047	335	Dolichyl-phosphate beta-glucosyltransfer	0.802	0.677	0.740	7e-96
356569014	333	PREDICTED: dolichyl-phosphate beta-gluco	0.787	0.669	0.740	6e-95
449450171	329	PREDICTED: dolichyl-phosphate beta-gluco	0.710	0.610	0.753	9e-88
357503471	330	Dolichyl-phosphate beta-glucosyltransfer	0.777	0.666	0.713	2e-86
357503469	328	Dolichyl-phosphate beta-glucosyltransfer	0.759	0.655	0.720	5e-85
15225508	336	dolichyl-phosphate beta-glucosyltransfer	0.802	0.675	0.629	3e-84

>gi|224100983|ref|XP_002312095.1| predicted protein [Populus trichocarpa] gi|222851915|gb|EEE89462.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/227 (77%), Positives = 204/227 (89%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           MGF+  I E L+ +V II   L++A++ EAYRRR N+ H++A A FEDP+SLKQVPCP +
Sbjct: 1   MGFLWTIAELLVALVFIIASFLLTAVVSEAYRRRHNNTHVDASAFFEDPNSLKQVPCPHI 60

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPAEKYISL+IPAFNEEHRLPGALDET+NYLQ+RAAKDKSFTYEV+I+DDGS+D TKRV
Sbjct: 61  HDPAEKYISLVIPAFNEEHRLPGALDETINYLQERAAKDKSFTYEVVIVDDGSADATKRV 120

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AFDFV+KYTVDNVR+ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLE+Q
Sbjct: 121 AFDFVKKYTVDNVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLENQ 180

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           IHAV RKE+  G+S + DS+FRISDIP+AAFGSRAHLEEKALAT ++
Sbjct: 181 IHAVARKEFRLGESTSSDSSFRISDIPLAAFGSRAHLEEKALATRKW 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109522|ref|XP_002315224.1| predicted protein [Populus trichocarpa] gi|222864264|gb|EEF01395.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/227 (76%), Positives = 203/227 (89%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           MG +  I E L+ +++II   L++AI+ EAYRRR N+ H++A AIFEDP+SLKQVPCP +
Sbjct: 1   MGLLWTIAEVLVALILIIASFLLTAIVSEAYRRRHNNTHVDAHAIFEDPNSLKQVPCPHI 60

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPAEKY+SL+IPAFNEE+RLPGALDET+NYLQQRAAKDKSFTYEV+I+DDGS+D TKRV
Sbjct: 61  HDPAEKYLSLVIPAFNEEYRLPGALDETINYLQQRAAKDKSFTYEVVIVDDGSADATKRV 120

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AFDFV+KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKV DLEKLE+Q
Sbjct: 121 AFDFVKKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVADLEKLENQ 180

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           IHAV RKE+  G+S   DS+FRISD+P+AAFGSRAHLEEKALAT ++
Sbjct: 181 IHAVARKEFCLGESAASDSSFRISDMPLAAFGSRAHLEEKALATRKW 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449525|ref|XP_002283615.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Vitis vinifera] gi|296086237|emb|CBI31678.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/228 (75%), Positives = 201/228 (88%), Gaps = 1/228 (0%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAP-AIFEDPSSLKQVPCPS 59
           MG++  I E L++ V     GL  AIIFE++RRR N+AH+E+  A+FEDP+SLKQVPCP+
Sbjct: 1   MGWLWIITELLVIAVTFAALGLGFAIIFESFRRRHNNAHVESGNAVFEDPNSLKQVPCPN 60

Query: 60  VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
           ++DPAEKYISLIIPAFNEE RLPGALDET+NYLQQRAAKDKSF+YEV+I+DDGS+DGT R
Sbjct: 61  ISDPAEKYISLIIPAFNEELRLPGALDETMNYLQQRAAKDKSFSYEVVIVDDGSADGTNR 120

Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179
           VAFDFV+KYT+DNVR+ILLGRN+GKGEAIR+GMLHSRGELLLMLDADGATKVTDLEKLE+
Sbjct: 121 VAFDFVKKYTIDNVRVILLGRNYGKGEAIRQGMLHSRGELLLMLDADGATKVTDLEKLEN 180

Query: 180 QIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           QIH V  KE   GDS T DS+ RISDIP+AAFGSRAHLEEKALAT ++
Sbjct: 181 QIHVVAMKEIQFGDSATGDSSLRISDIPLAAFGSRAHLEEKALATRKW 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499640|ref|XP_003518645.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Glycine max]

 Score =  356 bits (913), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 190/227 (83%), Gaps = 4/227 (1%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           M ++C  V        I L G +S + FEAY+RR+NH HIE PAIFEDPSSLKQVPCP +
Sbjct: 1   MDYICFFV----TFTAIALLGFVSVVFFEAYKRRNNHQHIEVPAIFEDPSSLKQVPCPHI 56

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPA KYISLIIPAFNEEHRLPGAL+ET+NYL QR  KD SFTYEV+IIDDGS+D TKRV
Sbjct: 57  VDPATKYISLIIPAFNEEHRLPGALEETMNYLHQRTLKDSSFTYEVVIIDDGSADETKRV 116

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGM+HSRGELLLMLDADGATKVTDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMMHSRGELLLMLDADGATKVTDLEKLENQ 176

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           I AV ++EY+HGDS   D  FRISDIP A FGSRAHLEEKALAT ++
Sbjct: 177 IQAVAKREYHHGDSSDSDPRFRISDIPAAVFGSRAHLEEKALATRKW 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580047|ref|XP_002530857.1| Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis] gi|223529581|gb|EEF31531.1| Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]

 Score =  356 bits (913), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 197/227 (86%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           MGF+  + E  + ++V+I   L++AIIFE+Y+RR N+ H+++  IFEDP+SL QVPCP +
Sbjct: 1   MGFLWTVAEVFVALIVVIASLLLTAIIFESYKRRHNNKHVDSHVIFEDPNSLNQVPCPYI 60

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPAEKYISLIIPAFNEE+RLPGALDET+NYLQQRAA DKSFTYEV+I+DDGSSD TKRV
Sbjct: 61  HDPAEKYISLIIPAFNEEYRLPGALDETMNYLQQRAANDKSFTYEVVIVDDGSSDATKRV 120

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AF FV+KY+VDNVR+ILLG+NHGKGEAIRKGMLHSRGELLLMLDADGATKV DLEKLE+Q
Sbjct: 121 AFGFVKKYSVDNVRVILLGKNHGKGEAIRKGMLHSRGELLLMLDADGATKVNDLEKLENQ 180

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           IHAV  KE + GDS   DS  RISD+PIAAFGSRAHLEEKALAT ++
Sbjct: 181 IHAVANKEIHLGDSAATDSIHRISDVPIAAFGSRAHLEEKALATRKW 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569014|ref|XP_003552702.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Glycine max]

 Score =  353 bits (905), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 189/227 (83%), Gaps = 4/227 (1%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           M ++C  V        I L G +  + FEAY+RR+NH HIE PAIFEDPSSLKQVPCP +
Sbjct: 1   MDYICLFV----TFTAIALLGFVFVVFFEAYKRRNNHQHIEVPAIFEDPSSLKQVPCPHI 56

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPA KYISLIIPAFNEEHRLPGAL+ET+NYL QR  KD SFTYEV+IIDDGS+D TKRV
Sbjct: 57  VDPATKYISLIIPAFNEEHRLPGALEETMNYLHQRTLKDSSFTYEVVIIDDGSADETKRV 116

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGM+HSRGELLLMLDADGATKVTDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMMHSRGELLLMLDADGATKVTDLEKLENQ 176

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           I AV ++EY+HGDS   D  FRISD+P A FGSRAHLEEKALAT ++
Sbjct: 177 IQAVAKREYHHGDSSDSDPRFRISDVPAAVFGSRAHLEEKALATRKW 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450171|ref|XP_004142837.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Cucumis sativus] gi|449483934|ref|XP_004156737.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Cucumis sativus]

 Score =  329 bits (843), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 156/207 (75%), Positives = 185/207 (89%), Gaps = 6/207 (2%)

Query: 21  GLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHR 80
            L+S +I EAY+RR N  H+ APAIFEDP+SLK+VPCPS+ DPAEKY+SLI+PAFNEE+R
Sbjct: 21  ALLSTLIIEAYKRRFNREHLGAPAIFEDPNSLKRVPCPSIFDPAEKYMSLIVPAFNEEYR 80

Query: 81  LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140
           L GAL+ET+NYLQQRAAKDKSF+YEV+IIDDGS+DGTK +AF+FVRKY+V+NVR+ILLGR
Sbjct: 81  LQGALEETINYLQQRAAKDKSFSYEVIIIDDGSADGTKGIAFNFVRKYSVENVRVILLGR 140

Query: 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST 200
           NHGKGEAIRKGMLHSRGE+LLMLDADGATK+TDLEKLE+QIHAV +KE       + DS+
Sbjct: 141 NHGKGEAIRKGMLHSRGEILLMLDADGATKITDLEKLENQIHAVVKKE------TSRDSS 194

Query: 201 FRISDIPIAAFGSRAHLEEKALATVQY 227
            R+SDIPI AFGSRAHLEEKALAT ++
Sbjct: 195 VRVSDIPITAFGSRAHLEEKALATRKW 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503471|ref|XP_003622024.1| Dolichyl-phosphate beta-glucosyltransferase [Medicago truncatula] gi|355497039|gb|AES78242.1| Dolichyl-phosphate beta-glucosyltransferase [Medicago truncatula]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 162/227 (71%), Positives = 186/227 (81%), Gaps = 7/227 (3%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           M F+C IV       V ++ G    I  EAYRRR+NH HIE PAIFEDP+SL QVPCP V
Sbjct: 1   MEFLCLIV----TFAVTLMLGFFLVIFVEAYRRRNNHQHIEVPAIFEDPNSLTQVPCPHV 56

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPA KYISLIIPA+NEEHRLPGAL+ET+ YLQ RA+KD SF+YEV+I+DDGS DGTKRV
Sbjct: 57  VDPASKYISLIIPAYNEEHRLPGALEETMIYLQHRASKDPSFSYEVVIVDDGSVDGTKRV 116

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK+TDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKITDLEKLENQ 176

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           I AV +K+ +   S   DS+FR+SD P+  FGSRAHLEEKALAT ++
Sbjct: 177 IRAVAKKDGD---SSGSDSSFRMSDTPVVVFGSRAHLEEKALATRKW 220

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503469|ref|XP_003622023.1| Dolichyl-phosphate beta-glucosyltransferase [Medicago truncatula] gi|355497038|gb|AES78241.1| Dolichyl-phosphate beta-glucosyltransferase [Medicago truncatula]

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 160/222 (72%), Positives = 182/222 (81%), Gaps = 7/222 (3%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           M F+C IV       V ++ G    I  EAYRRR+NH HIE PAIFEDP+SL QVPCP V
Sbjct: 1   MEFLCLIV----TFAVTLMLGFFLVIFVEAYRRRNNHQHIEVPAIFEDPNSLTQVPCPHV 56

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
            DPA KYISLIIPA+NEEHRLPGAL+ET+ YLQ RA+KD SF+YEV+I+DDGS DGTKRV
Sbjct: 57  VDPASKYISLIIPAYNEEHRLPGALEETMIYLQHRASKDPSFSYEVVIVDDGSVDGTKRV 116

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK+TDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKITDLEKLENQ 176

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222
           I AV +K+ +   S   DS+FR+SD P+  FGSRAHLEEKAL
Sbjct: 177 IRAVAKKDGD---SSGSDSSFRMSDTPVVVFGSRAHLEEKAL 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225508|ref|NP_181493.1| dolichyl-phosphate beta-glucosyltransferase [Arabidopsis thaliana] gi|15810211|gb|AAL07006.1| At2g39630/F12L6.29 [Arabidopsis thaliana] gi|18700244|gb|AAL77732.1| At2g39630/F12L6.29 [Arabidopsis thaliana] gi|20197112|gb|AAM14922.1| putative dolichyl-phosphate beta-glucosyltransferase [Arabidopsis thaliana] gi|330254605|gb|AEC09699.1| dolichyl-phosphate beta-glucosyltransferase [Arabidopsis thaliana]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 143/227 (62%), Positives = 190/227 (83%)

Query: 1   MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
           M F+  + E  L +++I+LFG +S ++FEA+RRR ++  +E     +DP S+K +PCP +
Sbjct: 1   MEFLVTVAEFSLWLLLIVLFGFLSVVVFEAWRRRHSNVSVETVTTLDDPKSIKPIPCPHI 60

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
           TDPAEKY+SLI+PA+NEE RLP AL+ET++YLQ RA++DKSF++EV+I+DDGS DGTKRV
Sbjct: 61  TDPAEKYLSLIVPAYNEELRLPAALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRV 120

Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
           AFDF+RKYT+DN+R+I LG+N GKGEAIRKGMLHSRG+LLLMLDADGATKVTDLEKLE+Q
Sbjct: 121 AFDFIRKYTIDNIRVIPLGKNQGKGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQ 180

Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
           I+AV R+EY+  +  + D  F+I D+ ++AFGSRAHLEEKALAT ++
Sbjct: 181 INAVAREEYSIRNPASKDMDFKIGDVQVSAFGSRAHLEEKALATRKW 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2039707	336	AT2G39630 [Arabidopsis thalian	0.710	0.598	0.671	1.4e-73
UNIPROTKB|F1RS38	194	ALG5 "Uncharacterized protein"	0.512	0.747	0.496	8.3e-35
UNIPROTKB|E1BUU9	287	ALG5 "Uncharacterized protein"	0.579	0.571	0.436	4.6e-34
UNIPROTKB|Q9Y673	324	ALG5 "Dolichyl-phosphate beta-	0.611	0.533	0.434	9.5e-34
UNIPROTKB|B4DR67	230	ALG5 "Dolichyl-phosphate beta-	0.597	0.734	0.438	2e-33
RGD|1308900	324	Alg5 "ALG5, dolichyl-phosphate	0.611	0.533	0.429	4.1e-33
UNIPROTKB|F1N540	324	ALG5 "Uncharacterized protein"	0.611	0.533	0.424	5.2e-33
UNIPROTKB|E2R422	324	ALG5 "Uncharacterized protein"	0.611	0.533	0.429	6.7e-33
UNIPROTKB|J9P6U5	291	ALG5 "Uncharacterized protein"	0.611	0.594	0.429	6.7e-33
MGI|MGI:1913498	324	Alg5 "asparagine-linked glycos	0.544	0.475	0.458	1.8e-32

TAIR|locus:2039707 AT2G39630 [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 135/201 (67%), Positives = 173/201 (86%)

Query:    24 SAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPG 83
             S ++FEA+RRR ++  +E     +DP S+K +PCP +TDPAEKY+SLI+PA+NEE RLP 
Sbjct:    24 SVVVFEAWRRRHSNVSVETVTTLDDPKSIKPIPCPHITDPAEKYLSLIVPAYNEELRLPA 83

Query:    84 ALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143
             AL+ET++YLQ RA++DKSF++EV+I+DDGS DGTKRVAFDF+RKYT+DN+R+I LG+N G
Sbjct:    84 ALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRVAFDFIRKYTIDNIRVIPLGKNQG 143

Query:   144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRI 203
             KGEAIRKGMLHSRG+LLLMLDADGATKVTDLEKLE+QI+AV R+EY+  +  + D  F+I
Sbjct:   144 KGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQINAVAREEYSIRNPASKDMDFKI 203

Query:   204 SDIPIAAFGSRAHLEEKALAT 224
              D+ ++AFGSRAHLEEKALAT
Sbjct:   204 GDVQVSAFGSRAHLEEKALAT 224

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=ISS

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

UNIPROTKB|F1RS38 ALG5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 73/147 (49%), Positives = 101/147 (68%)

Query:    36 NHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQR 95
             +H H E    F   +  K+   PS+ DP  K +S+++P++NEE+RLP  LDE L YL++R
Sbjct:    36 HHRH-EEEKFFLSATGRKEA-LPSIRDPPTKQLSVVVPSYNEENRLPVMLDEALGYLEER 93

Query:    96 AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155
               +D +FTYEV+++DDGS D T +VAF + +KY  D VR+I L +N GKG AIR G+  S
Sbjct:    94 QKRDPTFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLLKNRGKGGAIRMGIFSS 153

Query:   156 RGELLLMLDADGATKVTDLEKLESQIH 182
             RGE +LM DADGATK  D+EKLE  ++
Sbjct:   154 RGEKILMADADGATKFPDIEKLEKGLN 180

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|E1BUU9 ALG5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 75/172 (43%), Positives = 109/172 (63%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F      K+ P PS+ DP  K +S+++P++NEE RLP  +DE L+YL++R 
Sbjct:     5 HRHAEEK-FFVSAEGRKE-PVPSIHDPPTKELSVVVPSYNEEDRLPLMMDEALDYLEKRQ 62

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
              +D SFTYEV+++DDGS D T  V  + +R+   D VR++ L +N GKG A+R G+L SR
Sbjct:    63 KRDPSFTYEVIVVDDGSKDQTTEVMVELLRENGSDKVRVLSLVKNRGKGGAVRMGVLSSR 122

Query:   157 GELLLMLDADGATKVTDLEKLESQIH------AVGRKEYNHGDSVTVDSTFR 202
             G+ +LM DADGATK  D+EK+E ++H      + G + +   DS+   S FR
Sbjct:   123 GKKILMADADGATKFADIEKVEEEVHLNQMAISCGSRAHLEKDSIAKRSYFR 174

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|Q9Y673 ALG5 "Dolichyl-phosphate beta-glucosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 83/191 (43%), Positives = 116/191 (60%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F +    K+   PS+ D   K +S+++P++NEE RLP  +DE L+YL++R 
Sbjct:    38 HRH-EEEKFFLNAKGQKET-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALSYLEKRQ 95

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
              +D +FTYEV+++DDGS D T +VAF + +KY  D VR+I L +N GKG AIR G+  SR
Sbjct:    96 KRDPAFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGIFSSR 155

Query:   157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
             GE +LM DADGATK  D+EKLE  ++          D     +   I      A GSRAH
Sbjct:   156 GEKILMADADGATKFPDVEKLEKGLN----------DLQPWPNQMAI------ACGSRAH 199

Query:   217 LEEKALATVQY 227
             LE++++A   Y
Sbjct:   200 LEKESIAQRSY 210

GO:0016021 "integral to membrane" evidence=IEA

GO:0004581 "dolichyl-phosphate beta-glucosyltransferase activity" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0004576 "oligosaccharyl transferase activity" evidence=TAS

GO:0006486 "protein glycosylation" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|B4DR67 ALG5 "Dolichyl-phosphate beta-glucosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 82/187 (43%), Positives = 115/187 (61%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F +    K+   PS+ D   K +S+++P++NEE RLP  +DE L+YL++R 
Sbjct:    38 HRH-EEEKFFLNAKGQKET-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALSYLEKRQ 95

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
              +D +FTYEV+++DDGS D T +VAF + +KY  D VR+I L +N GKG AIR G+  SR
Sbjct:    96 KRDPAFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGIFSSR 155

Query:   157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
             GE +LM DADGATK  D+EKLE  ++          D     +   I      A GSRAH
Sbjct:   156 GEKILMADADGATKFPDVEKLEKGLN----------DLQPWPNQMAI------ACGSRAH 199

Query:   217 LEEKALA 223
             LE++++A
Sbjct:   200 LEKESIA 206

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

RGD|1308900 Alg5 "ALG5, dolichyl-phosphate beta-glucosyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 82/191 (42%), Positives = 113/191 (59%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F +    K+   PS+ D   K +S+++P++NEE RLP  +DE LNYL++R 
Sbjct:    38 HRH-EEEKFFLNARGQKEA-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALNYLEKRQ 95

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
               D++FTYEV+++DDGS D T +VA  + +KY  D VR+I L +N GKG A+R G+  SR
Sbjct:    96 KHDRTFTYEVIVVDDGSEDQTSKVALKYCQKYGSDKVRVITLVQNRGKGGAVRMGVFSSR 155

Query:   157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
             GE +LM DADGATK  D+EKLE  +           D         I      A GSRAH
Sbjct:   156 GEKILMADADGATKFPDVEKLEKGL----------SDLQPWPEQMAI------ACGSRAH 199

Query:   217 LEEKALATVQY 227
             LE++++A   Y
Sbjct:   200 LEKESIAQRSY 210

GO:0007368 "determination of left/right symmetry" evidence=IEA;ISO

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|F1N540 ALG5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 81/191 (42%), Positives = 117/191 (61%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F +    ++   PS+ D   K +S+++P++NEE RLP  +DE L YL+ R 
Sbjct:    38 HRH-EEEKFFLNVRGQREA-LPSIQDSPTKQLSVVVPSYNEEKRLPVMMDEALGYLEDRQ 95

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
              +D +FTYEV+I+DDGS D T +VAF + +KY  D VR+I L +N GKG AIR G+  SR
Sbjct:    96 KQDPTFTYEVIIVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGVFSSR 155

Query:   157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
             G+ +LM DADGATK  D+EKLE  ++ +  + +   D + +            A GSRAH
Sbjct:   156 GKKILMADADGATKFPDIEKLEKGLNDL--QPWP--DQMAI------------ACGSRAH 199

Query:   217 LEEKALATVQY 227
             LE++++A   Y
Sbjct:   200 LEKESIAQRSY 210

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|E2R422 ALG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 82/191 (42%), Positives = 114/191 (59%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F +    K+   PSV D   K +S+++P++NEE RLP  +DE L YL++R 
Sbjct:    38 HQH-EEEKFFLNAKGQKET-LPSVWDSPTKQLSVVVPSYNEEKRLPVMMDEALGYLEKRQ 95

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
              +D +FTYEV+++DDGS D T +VAF + +KY  D VR+I L +N GKG AI+ G+  SR
Sbjct:    96 KQDPTFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIKMGIFSSR 155

Query:   157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
             GE +LM DADGAT+  D+EKLE  ++          D         I      A GSRAH
Sbjct:   156 GEKILMADADGATQFPDIEKLEKGLN----------DLQPWPEQMAI------ACGSRAH 199

Query:   217 LEEKALATVQY 227
             LE++++A   Y
Sbjct:   200 LEKESIAQRSY 210

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|J9P6U5 ALG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 82/191 (42%), Positives = 114/191 (59%)

Query:    37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
             H H E    F +    K+   PSV D   K +S+++P++NEE RLP  +DE L YL++R 
Sbjct:     5 HQH-EEEKFFLNAKGQKET-LPSVWDSPTKQLSVVVPSYNEEKRLPVMMDEALGYLEKRQ 62

Query:    97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
              +D +FTYEV+++DDGS D T +VAF + +KY  D VR+I L +N GKG AI+ G+  SR
Sbjct:    63 KQDPTFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIKMGIFSSR 122

Query:   157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
             GE +LM DADGAT+  D+EKLE  ++          D         I      A GSRAH
Sbjct:   123 GEKILMADADGATQFPDIEKLEKGLN----------DLQPWPEQMAI------ACGSRAH 166

Query:   217 LEEKALATVQY 227
             LE++++A   Y
Sbjct:   167 LEKESIAQRSY 177

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

MGI|MGI:1913498 Alg5 "asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)" [Mus musculus (taxid:10090)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 78/170 (45%), Positives = 105/170 (61%)

Query:    58 PSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT 117
             PS+ D   K +S+++P++NEE RLP  +DE LNYL++R   D +FTYEV+++DDGS D T
Sbjct:    57 PSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALNYLEKRQKHDCTFTYEVIVVDDGSEDQT 116

Query:   118 KRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
              +VA  + +KY  D VR+I L RN GKG A+R G+  SRGE +LM DADGATK  D+EKL
Sbjct:   117 SKVALKYCQKYGSDKVRVITLVRNRGKGGAVRMGVFSSRGEKILMADADGATKFPDVEKL 176

Query:   178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQY 227
             E  +           D         I      A GSRAHLE++++A   Y
Sbjct:   177 EKGL----------SDLQPWPEQMAI------ACGSRAHLEKESIAQRSY 210

GO:0004581 "dolichyl-phosphate beta-glucosyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.4.1.80	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
cd04188	211	cd04188, DPG_synthase, DPG_synthase is involved in	4e-47
PTZ00260	333	PTZ00260, PTZ00260, dolichyl-phosphate beta-glucos	2e-42
cd04179	185	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_l	3e-28
pfam00535	168	pfam00535, Glycos_transf_2, Glycosyl transferase f	4e-20
cd04187	181	cd04187, DPM1_like_bac, Bacterial DPM1_like enzyme	2e-17
COG0463	291	COG0463, WcaA, Glycosyltransferases involved in ce	1e-15
cd00761	156	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase	2e-15
cd06423	180	cd06423, CESA_like, CESA_like is the cellulose syn	3e-15
cd06439	251	cd06439, CESA_like_1, CESA_like_1 is a member of t	6e-15
PRK11204	420	PRK11204, PRK11204, N-glycosyltransferase; Provisi	1e-14
TIGR03937	407	TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glu	7e-14
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	8e-14
cd06442	224	cd06442, DPM1_like, DPM1_like represents putative	4e-13
PRK10714	325	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy	2e-12
cd02525	249	cd02525, Succinoglycan_BP_ExoA, ExoA is involved i	5e-12
PLN02726	243	PLN02726, PLN02726, dolichyl-phosphate beta-D-mann	2e-11
cd04192	229	cd04192, GT_2_like_e, Subfamily of Glycosyltransfe	7e-10
cd02522	221	cd02522, GT_2_like_a, GT_2_like_a represents a gly	1e-08
TIGR04283	220	TIGR04283, glyco_like_mftF, transferase 2, rSAM/se	1e-08
PRK13915	306	PRK13915, PRK13915, putative glucosyl-3-phosphogly	1e-08
PRK14583	444	PRK14583, hmsR, N-glycosyltransferase; Provisional	1e-07
cd02511	229	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS	3e-06
TIGR04242	395	TIGR04242, nodulat_NodC, chitooligosaccharide synt	2e-05
cd04186	166	cd04186, GT_2_like_c, Subfamily of Glycosyltransfe	2e-05
pfam13641	229	pfam13641, Glyco_tranf_2_3, Glycosyltransferase li	3e-05
PRK10073	328	PRK10073, PRK10073, putative glycosyl transferase;	3e-04
cd06436	191	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosam	4e-04
PRK10063	248	PRK10063, PRK10063, putative glycosyl transferase;	4e-04
cd06433	202	cd06433, GT_2_WfgS_like, WfgS and WfeV are involve	6e-04
TIGR03111	439	TIGR03111, glyc2_xrt_Gpos1, putative glycosyltrans	0.001
TIGR04182	293	TIGR04182, glyco_TIGR04182, glycosyltransferase, T	0.001
cd04196	214	cd04196, GT_2_like_d, Subfamily of Glycosyltransfe	0.001
cd04195	201	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved	0.001

>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation

 Score =  156 bits (396), Expect = 4e-47
 Identities = 69/185 (37%), Positives = 96/185 (51%), Gaps = 37/185 (20%)

Query: 70  LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
           ++IPA+NEE RLP  L+E + YL++R     SF+YE++++DDGS DGT  VA    RK  
Sbjct: 1   VVIPAYNEEKRLPPTLEEAVEYLEER----PSFSYEIIVVDDGSKDGTAEVARKLARKNP 56

Query: 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189
              +R++ L +N GKG A+R GML +RG+ +L  DAD AT   +LEKLE  +   G    
Sbjct: 57  -ALIRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSG---- 111

Query: 190 NHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTFHC 249
                          DI   A GSRAHL   A+    +    R  +           F+ 
Sbjct: 112 --------------YDI---AIGSRAHLASAAVVKRSW---LRNLL--------GRGFNF 143

Query: 250 LVEIL 254
           LV +L
Sbjct: 144 LVRLL 148

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. Length = 211

>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase; Provisional

 Score =  147 bits (374), Expect = 2e-42
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 7   IVEALLVVVVIILFGLISAIIFEAY------RRRDNHAHIEAPAIFEDPS-SLKQVPCPS 59
           I + +    ++I+ GL+  +    Y              +++  I E      K+    +
Sbjct: 4   IWKVIFKHRMLIVLGLVVGLALLFYPYISWPDDDKVIRQVKSSVIHEKSKEVDKENYINN 63

Query: 60  VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
           +   ++  +S++IPA+NEE RLP  L ET+ YL+ R+ KD  F YE++I++DGS D T +
Sbjct: 64  ILKDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLK 123

Query: 120 VAFDFVRKYTVDNV--RIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
           VA DF R+    N+  R++ L RN GKG A+R GML SRG+ +LM+DADGAT + D +KL
Sbjct: 124 VAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKL 183

Query: 178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219
           E  +  + +                        FGSR HL +
Sbjct: 184 EDIMLKIEQNGLG------------------IVFGSRNHLVD 207

Length = 333

>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

 Score =  106 bits (268), Expect = 3e-28
 Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 8/114 (7%)

Query: 70  LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
           ++IPA+NEE  +P  ++  L  L      ++ + YE++++DDGS+DGT  +A +   +  
Sbjct: 1   VVIPAYNEEENIPELVERLLAVL------EEGYDYEIIVVDDGSTDGTAEIARELAAR-- 52

Query: 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183
           V  VR+I L RN GKG A+R G   +RG++++ +DAD      D+ KL  ++  
Sbjct: 53  VPRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLE 106

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 185

>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 69  SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY 128
           S+IIP +NEE  L   L+  LN   +         +E++++DDGS+DGT  +A ++ +  
Sbjct: 1   SVIIPTYNEEKYLEETLESLLNQTYKN--------FEIIVVDDGSTDGTVEIAEEYAKND 52

Query: 129 TVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
               VR+I L  N GK  A   G+  + G+ +  LDAD       LEKL
Sbjct: 53  --PRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKL 99

Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168

>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1

 Score = 77.5 bits (192), Expect = 2e-17
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 13/100 (13%)

Query: 70  LIIPAFNEEHRLPGALDETLNYLQQR---AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR 126
           +++P +NEE        E L  L +R     +   + YE++ +DDGS+D T  +  +   
Sbjct: 1   IVVPVYNEE--------ENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA 52

Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           +     V++I L RN G+  A+  G+ H+RG+ ++ +DAD
Sbjct: 53  RD--PRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDAD 90

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181

>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 75.1 bits (183), Expect = 1e-15
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 14/119 (11%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S++IP +NEE  LP AL+  LN   +         +E++++DDGS+DGT  +A     +
Sbjct: 5   VSVVIPTYNEEEYLPEALESLLNQTYKD--------FEIIVVDDGSTDGTTEIA----IE 52

Query: 128 YTVDNVRIILLG--RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184
           Y   +VR+I L   RN G G A   G+ ++RG+ ++ LDAD       +  + +     
Sbjct: 53  YGAKDVRVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQHPPELIPLVAAGGDGD 111

Length = 291

>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 10/113 (8%)

Query: 71  IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV 130
           IIPA+NEE  L   L+   + L Q         +EV+++DDGS+DGT  +  ++ +K   
Sbjct: 2   IIPAYNEEPYLERCLE---SLLAQTYPN-----FEVIVVDDGSTDGTLEILEEYAKKD-- 51

Query: 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183
             V  ++   N G   A   G+  +RGE +L LDAD       LE+L +++ A
Sbjct: 52  PRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLA 104

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156

>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 13/99 (13%)

Query: 70  LIIPAFNEEHRLPGALD--ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +I+PA+NEE  +   ++    L+Y +           EV+++DDGS+D T  +  +    
Sbjct: 1   IIVPAYNEEAVIERTIESLLALDYPK----------LEVIVVDDGSTDDTLEILEELAAL 50

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y    V ++    N GK  A+  G+ H++G+++++LDAD
Sbjct: 51  YI-RRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDAD 88

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan. Length = 180

>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

 Score = 72.2 bits (178), Expect = 6e-15
 Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +++IIPA+NEE  +   L+   N L     +D+    E++++ DGS+DGT     +  R+
Sbjct: 31  VTIIIPAYNEEAVIEAKLE---NLLALDYPRDR---LEIIVVSDGSTDGTA----EIARE 80

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y    V+++      GK  A+ + +  + GE+++  DA+
Sbjct: 81  YADKGVKLLRFPERRGKAAALNRALALATGEIVVFTDAN 119

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Length = 251

>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 12/100 (12%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNY-LQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR 126
           +S+++P +NE   +    +ET+++ L  R        YEV+ I+DGSSD T  +      
Sbjct: 56  VSILVPCYNEGENV----EETISHLLALRYPN-----YEVIAINDGSSDNTGEILDRLAA 106

Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           +     +R+I L  N GK  A+  G   +R E L+ +D D
Sbjct: 107 QI--PRLRVIHLAENQGKANALNTGAAAARSEYLVCIDGD 144

Length = 420

>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine synthase

 Score = 70.7 bits (174), Expect = 7e-14
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 12/100 (12%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNY-LQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR 126
           +S+++P +NE   +    +ET+++ L  R        +E++ I+DGS D T  +      
Sbjct: 47  VSILVPCYNEGANV----EETISHLLALRYPN-----FEIIAINDGSKDNTAEILDRLAA 97

Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           +     +R+I L  N GK  A+  G+L ++ E L+ +D D
Sbjct: 98  QD--PRLRVIHLAENQGKANALNTGLLAAKYEYLVCIDGD 135

Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages. Length = 407

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 70.7 bits (173), Expect = 8e-14
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 16  VIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAF 75
           +I++  LI +II            +    +   P S  +   P   D     +S+IIPA+
Sbjct: 14  LILILLLILSIIT----------LLLGYLLLVLPLSRPRKKLPKDADKLLPKVSVIIPAY 63

Query: 76  NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI 135
           NEE   P  L+ETL  L  +        YEV+++DDGS+D T  +  +   +Y  +   I
Sbjct: 64  NEE---PEVLEETLESLLSQDYPR----YEVIVVDDGSTDETYEILEELGAEYGPNFRVI 116

Query: 136 ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
               +N GK  A+  G+  ++G+++++LDAD   +   L +L
Sbjct: 117 YPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158

Length = 439

>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1

 Score = 66.8 bits (164), Expect = 4e-13
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 70  LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
           +IIP +NE   +P  ++     L       K   YE++++DD S DGT  +  +  ++Y 
Sbjct: 1   IIIPTYNERENIPELIERLDAAL-------KGIDYEIIVVDDNSPDGTAEIVRELAKEY- 52

Query: 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADG 167
              VR+I+     G G A  +G   +RG++++++DAD 
Sbjct: 53  -PRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADL 89

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 224

>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 10/108 (9%)

Query: 61  TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
                K +S++IP +NE+  LP  +  T    +    +     YE+L+IDDGSSD +  +
Sbjct: 1   EIHPIKKVSVVIPVYNEQESLPELIRRTTAACESLGKE-----YEILLIDDGSSDNSAEM 55

Query: 121 AFDFVRKYTVDNVRII--LLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
               V      +  I+  LL RN+G+  AI  G  H  G+L++ LDAD
Sbjct: 56  ---LVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTGDLIITLDAD 100

Length = 325

>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan

 Score = 63.8 bits (156), Expect = 5e-12
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 15/103 (14%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+IIP  NEE  +   L+  LN   Q   KD     E++++D GS+DGT+    + V++
Sbjct: 2   VSIIIPVRNEEKYIEELLESLLN---QSYPKDL---IEIIVVDGGSTDGTR----EIVQE 51

Query: 128 YTVDNVRIILL---GRNHGKGEAIRKGMLHSRGELLLMLDADG 167
           Y   + RI L+    R    G  I  G+ +SRG++++ +DA  
Sbjct: 52  YAAKDPRIRLIDNPKRIQSAGLNI--GIRNSRGDIIIRVDAHA 92

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. Length = 249

>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 69  SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY 128
           S+I+P +NE   +       + YL  +A +D    +E++++DDGS DGT+ V     + Y
Sbjct: 12  SIIVPTYNERLNIA-----LIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVY 65

Query: 129 TVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
             D + +       G G A   G+ H+ G+ ++++DAD
Sbjct: 66  GEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDAD 103

Length = 243

>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 70  LIIPAFNEEHRLPGALD--ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           ++I A NE   LP  L     L+Y      K+K   +EV+++DD S+DGT ++  +F   
Sbjct: 1   VVIAARNEAENLPRLLQSLSALDY-----PKEK---FEVILVDDHSTDGTVQIL-EFAAA 51

Query: 128 YTVDNVRIILLGRNH--GKGEAIRKGMLHSRGELLLMLDAD 166
                ++I+   R    GK  A+   +  ++G+ ++  DAD
Sbjct: 52  KPNFQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDAD 92

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 229

>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 17/99 (17%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+IIP  NE   LP      L  L++          E++++D GS+DGT  +A      
Sbjct: 1   LSIIIPTLNEAENLPR----LLASLRRLNPLPL----EIIVVDGGSTDGTVAIARSA--- 49

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
                V +I   +  G+   +  G   +RG+ LL L AD
Sbjct: 50  ----GVVVISSPK--GRARQMNAGAAAARGDWLLFLHAD 82

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 221

>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2, rSAM/selenodomain-associated

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 18/99 (18%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+IIP  NE   LP    E L  LQ           EV+++D GS+DGT  +A      
Sbjct: 1   LSIIIPVLNEAATLP----ELLADLQALPG-----DAEVIVVDGGSTDGTVEIARSL--- 48

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
                 ++I   +  G+   +  G   ++G++LL L AD
Sbjct: 49  ----GAKVIHSPK--GRARQMNAGAALAKGDILLFLHAD 81

This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine [Unknown function, Enzymes of unknown specificity]. Length = 220

>gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 14/103 (13%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+++PA NEE    G + +++  L      D     E+++ID GS+D T   A      
Sbjct: 33  VSVVLPALNEE-ETVGKVVDSIRPLLMEPLVD-----ELIVIDSGSTDATAERA----AA 82

Query: 128 Y--TVDNVRIIL--LGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
               V +   IL  L    GKGEA+ + +  + G++++ +DAD
Sbjct: 83  AGARVVSREEILPELPPRPGKGEALWRSLAATTGDIVVFVDAD 125

Length = 306

>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 16/114 (14%)

Query: 55  VPCPSVTDPAEKYISLIIPAFNEEHRLPGA-LDETLNYLQQRAAKDKSFT-YEVLIIDDG 112
           VP P +       +S+++P FNE     G    ET+      AA  +++T  EV+ I+DG
Sbjct: 66  VPAPELK--GHPLVSILVPCFNE-----GLNARETI-----HAALAQTYTNIEVIAINDG 113

Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           SSD T +V    + +     +R+I L  N GK  A+R G   +R E L+ +D D
Sbjct: 114 SSDDTAQVLDALLAEDP--RLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGD 165

Length = 444

>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S++I   NEE  +   L+         + K      E++++D GS+D T  +A    ++
Sbjct: 2   LSVVIITKNEERNIERCLE---------SVKW--AVDEIIVVDSGSTDRTVEIA----KE 46

Query: 128 YTVDNVRIILL-GRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y     ++        G        +  +  + +L LDAD
Sbjct: 47  Y---GAKVYQRWWDGFGA--QRNFALELATNDWVLSLDAD 81

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. Length = 229

>gnl|CDD|211965 TIGR04242, nodulat_NodC, chitooligosaccharide synthase NodC

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 13/148 (8%)

Query: 42  APAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKS 101
           A   +  P+++      ++       + +I+P FNE+   P  L E L  +   AA+D +
Sbjct: 24  AQVFYARPTTVPATSSDALPSDPLPSVDVIVPCFNED---PRTLSECLASI---AAQDYA 77

Query: 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVR--IILLGRNHGKGEAIRKGMLHSRGEL 159
               V ++DDGS   T R A   V      + R   ILL +N GK +A    +  S G+L
Sbjct: 78  GKLRVYVVDDGS---TNRDALVPVHDAYASDPRFNFILLPKNVGKRKAQIAAIRRSSGDL 134

Query: 160 LLMLDADGATKVTDLEKLESQIH--AVG 185
           +L +D+D       + KL  ++   AVG
Sbjct: 135 VLNVDSDTTIAPDVVTKLALKMRDPAVG 162

Members of this family are NodC, an N-acetylglucosaminyltransferase involved in the production of nodulation factors through which rhizobia establish symbioses with leguminous plants. Length = 395

>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 71  IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV 130
           II  +N       +L+     L           +EV+++D+ S+DG+     + +R+   
Sbjct: 2   IIVNYN-------SLEYLKACLDS-LLAQTYPDFEVIVVDNASTDGS----VELLREL-F 48

Query: 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
             VR+I  G N G G    +G+  ++G+ +L+L+ D
Sbjct: 49  PEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPD 84

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166

>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +++++P +NE+  L   L   L     R         EV+++ DGS D T  VA +    
Sbjct: 3   VAVVVPTWNEDKVLGRTLRSILAQDYPR--------LEVIVVVDGSDDETLDVARELAAA 54

Query: 128 YTVDNVRIILLGRNHG---KGEAIRKGMLHSRGELLLMLDAD 166
           Y    V ++   R  G   K  A+ + +   + +L+++LDAD
Sbjct: 55  YPDVRVHVVRRPRPPGPTGKARALNEALRAIKSDLVVLLDAD 96

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 229

>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+IIP +N        ++   + + Q          E++I++DGS+D +  +A  +   
Sbjct: 8   LSIIIPLYNAGKDFRAFME---SLIAQTWT-----ALEIIIVNDGSTDNSVEIAKHYAEN 59

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y   +VR++    N G   A   G+  + G+ +   DAD
Sbjct: 60  YP--HVRLL-HQANAGVSVARNTGLAVATGKYVAFPDAD 95

Length = 328

>gnl|CDD|133058 cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 70  LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
           +++P  NEE      +  TL        ++K   + VL+IDD S D T  +    +    
Sbjct: 1   VLVPCLNEE----AVIQRTL----ASLLRNKP-NFLVLVIDDASDDDTAGIVRLAITDSR 51

Query: 130 VDNVRIILLGRNHGKGEAIRKG------MLHSRG-----ELLLMLDADG 167
           V  +R  L     GKG+A+         +L   G      ++ ++DADG
Sbjct: 52  VHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADG 100

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase. Length = 191

>gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+I  AF     L G + +T   L+   A+D   ++E +++D GS+DGT+    +F+  
Sbjct: 3   LSVITVAFRN---LEG-IVKTHASLRH-LAQDPGISFEWIVVDGGSNDGTR----EFLEN 53

Query: 128 YTVD-NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186
                N+R +    ++G  +A+ KG+  ++G   L L++       D      Q+     
Sbjct: 54  LNGIFNLRFV-SEPDNGIYDAMNKGIAMAQGRFALFLNSGDIFHQ-DAANFVRQLKMQKD 111

Query: 187 KEYNHGDSV 195
                GD++
Sbjct: 112 NAMIIGDAL 120

Length = 248

>gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 19/101 (18%)

Query: 69  SLIIPAFNEEHRLPGALDETLN-YLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           S+I P +N+   L     ET++  L Q          E ++ID GS+DGT     D ++K
Sbjct: 1   SIITPTYNQAETLE----ETIDSVLSQTYPN-----IEYIVIDGGSTDGT----VDIIKK 47

Query: 128 YTVDNVRIILLGRNHGKG--EAIRKGMLHSRGELLLMLDAD 166
           Y       I       KG  +A+ KG+  + G+++  L++D
Sbjct: 48  YEDKITYWI---SEPDKGIYDAMNKGIALATGDIIGFLNSD 85

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 202

>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase, exosortase G-associated

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 22/127 (17%)

Query: 67  YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYE---VLIIDDGSSDGTKRVAFD 123
            I++IIP +N E  L   +          +  ++++  E   +++ ++ S+D + +V   
Sbjct: 50  DITIIIPVYNSEDTLFNCI---------ESIYNQTYPIELIDIILANNQSTDDSFQVFCR 100

Query: 124 FVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADG-----ATK--VTDLEK 176
              ++    + +  +  + GK +A+   + +S G+ ++ +D+DG     A K  VT  E 
Sbjct: 101 AQNEF--PGLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFEN 158

Query: 177 LESQIHA 183
               IHA
Sbjct: 159 -NPDIHA 164

Members of this protein family are probable glycosyltransferases of family 2, whose genes are near those for the exosortase homolog XrtG (TIGR03110), which is restricted to Gram-positive bacteria. Other genes in the conserved gene neighborhood include a 6-pyruvoyl tetrahydropterin synthase homolog (TIGR03112) and an uncharacterized intergral membrane protein (TIGR03766). Length = 439

>gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLML 163
            ++L+ID  S+DGT+ +A             +I  G+  GKG+A+R+         +LML
Sbjct: 28  SDILVIDGNSTDGTQEIA------KEAGARVVIQSGK--GKGQAVREAFELIDAPYVLML 79

Query: 164 DADGATKVTDLEKL 177
           D DG     D + L
Sbjct: 80  DGDGTYLPADADAL 93

Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers. Length = 293

>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 105 EVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143
           E++I DDGS+DGT  +  +++ K     + +I  G+N G
Sbjct: 29  ELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLG 66

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 214

>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 105 EVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLML 163
           EV+++ DG  +     V  +F RK     ++++ L +N G G+A+ +G+ H   + +  +
Sbjct: 31  EVVLVKDGPVTQSLNEVLEEFKRKL---PLKVVPLEKNRGLGKALNEGLKHCTYDWVARM 87

Query: 164 DADGATKVTDLEK 176
           D D  +     EK
Sbjct: 88  DTDDISLPDRFEK 100

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PRK11204	420	N-glycosyltransferase; Provisional	99.96
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.95
PRK14583	444	hmsR N-glycosyltransferase; Provisional	99.95
PRK10018	279	putative glycosyl transferase; Provisional	99.95
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	99.95
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.94
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	99.94
PRK10063	248	putative glycosyl transferase; Provisional	99.94
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	99.94
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.93
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.93
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.93
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	99.93
PRK10073	328	putative glycosyl transferase; Provisional	99.93
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.93
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	99.93
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	99.92
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	99.92
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.92
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	99.91
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.91
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	99.91
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	99.9
KOG2977	323	consensus Glycosyltransferase [General function pr	99.9
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	99.9
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.9
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.9
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.89
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.89
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	99.88
cd06438	183	EpsO_like EpsO protein participates in the methano	99.88
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	99.88
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	99.88
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.87
COG1215	439	Glycosyltransferases, probably involved in cell wa	99.87
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	99.87
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.87
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	99.86
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.86
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	99.86
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	99.86
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.86
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	99.85
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	99.85
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	99.85
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	99.84
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.83
COG1216	305	Predicted glycosyltransferases [General function p	99.82
KOG2978	238	consensus Dolichol-phosphate mannosyltransferase [	99.82
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	99.81
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	99.78
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	99.78
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.77
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	99.77
PRK05454	691	glucosyltransferase MdoH; Provisional	99.75
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.74
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	99.68
PRK15489	703	nfrB bacteriophage N4 adsorption protein B; Provis	99.68
KOG2547	431	consensus Ceramide glucosyltransferase [Lipid tran	99.46
KOG3738	559	consensus Predicted polypeptide N-acetylgalactosam	99.39
KOG3736	578	consensus Polypeptide N-acetylgalactosaminyltransf	99.38
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	99.36
KOG3737	603	consensus Predicted polypeptide N-acetylgalactosam	99.2
COG2943	736	MdoH Membrane glycosyltransferase [Cell envelope b	98.77
COG4092	346	Predicted glycosyltransferase involved in capsule	98.65
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	98.46
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	98.45
PF13712	217	Glyco_tranf_2_5: Glycosyltransferase like family;	98.15
PF03142	527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	98.1
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	98.02
KOG3588	494	consensus Chondroitin synthase 1 [Carbohydrate tra	97.9
PF03071	434	GNT-I: GNT-I family; InterPro: IPR004139 The biosy	97.79
PLN02893	734	Cellulose synthase-like protein	97.76
PF03452	269	Anp1: Anp1; InterPro: IPR005109 The members of thi	97.65
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	97.64
PF09488	381	Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthas	97.53
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	97.36
PF06306	347	CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (	97.33
PF11316	234	Rhamno_transf: Putative rhamnosyl transferase ; In	97.27
PLN02195	977	cellulose synthase A	97.02
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	96.93
TIGR02460	381	osmo_MPGsynth mannosyl-3-phosphoglycerate synthase	96.93
PRK14503	393	mannosyl-3-phosphoglycerate synthase; Provisional	96.92
PLN02190	756	cellulose synthase-like protein	96.84
PF03214	348	RGP: Reversibly glycosylated polypeptide; InterPro	96.75
PF11735	241	CAP59_mtransfer: Cryptococcal mannosyltransferase	96.64
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	96.35
PF13733	136	Glyco_transf_7N: N-terminal region of glycosyl tra	96.33
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	96.32
cd00218	223	GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I)	96.29
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	96.16
KOG2571	862	consensus Chitin synthase/hyaluronan synthase (gly	96.12
KOG1476	330	consensus Beta-1,3-glucuronyltransferase B3GAT1/SQ	96.11
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	96.11
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	96.08
PLN02458	346	transferase, transferring glycosyl groups	96.08
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	96.03
PLN02436	1094	cellulose synthase A	95.94
PLN02400	1085	cellulose synthase	95.91
PLN02189	1040	cellulose synthase	95.88
KOG3916	372	consensus UDP-Gal:glucosylceramide beta-1,4-galact	95.61
PF01697	285	Glyco_transf_92: Glycosyltransferase family 92; In	95.6
PF04666	297	Glyco_transf_54: N-Acetylglucosaminyltransferase-I	95.55
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	95.34
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	95.15
COG2068	199	Uncharacterized MobA-related protein [General func	94.84
PF09258	247	Glyco_transf_64: Glycosyl transferase family 64 do	94.76
PLN03180	346	reversibly glycosylated polypeptide; Provisional	94.54
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	94.51
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	94.5
PLN02917	293	CMP-KDO synthetase	94.42
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	94.24
KOG1413	411	consensus N-acetylglucosaminyltransferase I [Carbo	94.13
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	93.63
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	93.38
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	93.37
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	93.29
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	93.27
PLN02248	1135	cellulose synthase-like protein	93.13
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	93.0
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	92.94
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	92.87
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	92.86
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	92.77
PF11397	343	GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP	92.75
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	92.63
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	92.62
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	92.53
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	92.52
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	92.41
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	92.35
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	92.34
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	92.32
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	92.18
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	91.88
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	91.68
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	91.66
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	91.39
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	91.19
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	91.17
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	91.16
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	91.15
PLN03183	421	acetylglucosaminyltransferase family protein; Prov	91.15
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	90.98
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	90.7
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	90.67
PF03552	720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	90.43
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	89.96
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	89.87
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	89.81
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	89.29
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	89.27
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	89.12
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	88.91
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	88.44
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	88.33
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	88.3
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	88.15
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	87.79
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	87.56
KOG3917	310	consensus Beta-1,4-galactosyltransferase B4GALT7/S	87.5
cd06431	280	GT8_LARGE_C LARGE catalytic domain has closest hom	87.47
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	87.45
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	87.31
PF03360	207	Glyco_transf_43: Glycosyltransferase family 43; In	87.18
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	86.92
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	86.9
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	86.53
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	86.44
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	86.21
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	85.32
PF07507	311	WavE: WavE lipopolysaccharide synthesis; InterPro:	84.67
PF11051	271	Mannosyl_trans3: Mannosyltransferase putative; Int	84.41
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	84.27
PF13896	317	Glyco_transf_49: Glycosyl-transferase for dystrogl	84.17
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	84.05
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	83.63
PF02485	244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	83.26
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	81.39
PLN02915	1044	cellulose synthase A [UDP-forming], catalytic subu	80.95
PF01644	163	Chitin_synth_1: Chitin synthase; InterPro: IPR0048	80.48
PRK10122	297	GalU regulator GalF; Provisional	80.15

>PRK11204 N-glycosyltransferase; Provisional

Probab=99.96  E-value=1.2e-27  Score=217.25  Aligned_cols=124  Identities=24%  Similarity=0.368  Sum_probs=113.5

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH  142 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~  142 (283)
                      ...|.|||+||+|||++.++++++|+++        |+++++||+||||||+|+|.+.++++.++++  ++++++.++|.
T Consensus        51 ~~~p~vsViIp~yne~~~i~~~l~sl~~--------q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~--~v~~i~~~~n~  120 (420)
T PRK11204         51 KEYPGVSILVPCYNEGENVEETISHLLA--------LRYPNYEVIAINDGSSDNTGEILDRLAAQIP--RLRVIHLAENQ  120 (420)
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--cEEEEEcCCCC
Confidence            4567899999999999999999999988        6788999999999999999999999988887  89999988899


Q ss_pred             CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346          143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT  196 (283)
Q Consensus       143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  196 (283)
                      ||+.|+|.|++++++|+++++|+|+.++|++|+++++.++++++.+++.|....
T Consensus       121 Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~  174 (420)
T PRK11204        121 GKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI  174 (420)
T ss_pred             CHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee
Confidence            999999999999999999999999999999999999999888887776665443

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=99.95  E-value=1.1e-27  Score=217.93  Aligned_cols=124  Identities=16%  Similarity=0.299  Sum_probs=108.4

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH  142 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~  142 (283)
                      ...|.|||+||+|||++.+.+||+|+.+|      +++...+||+||||||+|+|.+++++++++++  +++++..+++.
T Consensus        46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q------~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~~~~~  117 (439)
T TIGR03111        46 GKLPDITIIIPVYNSEDTLFNCIESIYNQ------TYPIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYMNSDQ  117 (439)
T ss_pred             CCCCCEEEEEEeCCChHHHHHHHHHHHhc------CCCCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence            35688999999999999999999999982      12333479999999999999999999988887  78887777789


Q ss_pred             CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      ||+.|+|.|++.++||+++++|+|+.++|++|+++++.+.++++.+++.|..
T Consensus       118 Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~  169 (439)
T TIGR03111       118 GKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVI  169 (439)
T ss_pred             CHHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEE
Confidence            9999999999999999999999999999999999999999888766555544

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=99.95  E-value=4.6e-27  Score=214.38  Aligned_cols=122  Identities=28%  Similarity=0.409  Sum_probs=112.4

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..|.|||+||+|||+..++++|+++++        |+++++||+||||||+|+|.++++++.++++  ++++++.++|.|
T Consensus        73 ~~p~vsViIP~yNE~~~i~~~l~sll~--------q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~n~G  142 (444)
T PRK14583         73 GHPLVSILVPCFNEGLNARETIHAALA--------QTYTNIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAHNQG  142 (444)
T ss_pred             CCCcEEEEEEeCCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence            467899999999999999999999988        6788999999999999999999999988887  899999888999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccce
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSV  195 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  195 (283)
                      |+.|+|.|++++++|+++++|+|+.++|++++++++.+.++++.+++.+...
T Consensus       143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~  194 (444)
T PRK14583        143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPR  194 (444)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccce
Confidence            9999999999999999999999999999999999999988888777666543

>PRK10018 putative glycosyl transferase; Provisional

Probab=99.95  E-value=9.1e-27  Score=199.00  Aligned_cols=120  Identities=17%  Similarity=0.254  Sum_probs=104.4

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..|.||||||+||+++.+.++|+|+++        |+++++|||||||||+|  .+.++++..+...++++++.++.|.|
T Consensus         3 ~~p~VSVIip~yN~~~~l~~~l~Svl~--------Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G   72 (279)
T PRK10018          3 DNPLISIYMPTWNRQQLAIRAIKSVLR--------QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSG   72 (279)
T ss_pred             CCCEEEEEEEeCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCC
Confidence            357899999999999999999999998        78889999999999984  55666666654445899999999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD  193 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~  193 (283)
                      .+.|+|.|++.|+||||+|+|+|+.+.|+.|+++++.+.+.+....+++.
T Consensus        73 ~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~  122 (279)
T PRK10018         73 ACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAN  122 (279)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEcc
Confidence            99999999999999999999999999999999999999876655544443

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=99.95  E-value=1.7e-26  Score=206.27  Aligned_cols=120  Identities=16%  Similarity=0.189  Sum_probs=105.4

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..|.||||||+|||++.|++||+|+++        |+|+++||||+||+|+|+|.++++++++++|..+++++..+++.|
T Consensus        39 ~~p~VSViiP~~nee~~l~~~L~Sl~~--------q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G  110 (373)
T TIGR03472        39 AWPPVSVLKPLHGDEPELYENLASFCR--------QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHG  110 (373)
T ss_pred             CCCCeEEEEECCCCChhHHHHHHHHHh--------cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCC
Confidence            467899999999999999999999998        778889999999999999999999999998866688887665544


Q ss_pred             ---HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          144 ---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       144 ---k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                         |..+++.++++++||+++|+|+|+.++|++|+++++.++ +++.+++.+
T Consensus       111 ~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~  161 (373)
T TIGR03472       111 PNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTC  161 (373)
T ss_pred             CChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEec
Confidence               788888899999999999999999999999999999995 455544444

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=99.94  E-value=3.1e-26  Score=187.24  Aligned_cols=119  Identities=20%  Similarity=0.326  Sum_probs=104.0

Q ss_pred             ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        66 p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      |++|||||+||++ +.+++||+|+++        |+++++|||||||||+|++. ++++.+..+.+  +++++..+++.|
T Consensus         1 p~vsiii~~~n~~~~~l~~~l~sl~~--------q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~g   70 (202)
T cd04184           1 PLISIVMPVYNTPEKYLREAIESVRA--------QTYPNWELCIADDASTDPEVKRVLKKYAAQDP--RIKVVFREENGG   70 (202)
T ss_pred             CeEEEEEecccCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCC--CEEEEEcccCCC
Confidence            5699999999999 999999999998        67778999999999999755 55666665555  788888888999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      ++.|+|.|++.+++||++++|+|+.++|++|+++++.+.++++.+++++..
T Consensus        71 ~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~  121 (202)
T cd04184          71 ISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDE  121 (202)
T ss_pred             HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccH
Confidence            999999999999999999999999999999999999997777766655443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=99.94  E-value=1.8e-26  Score=188.24  Aligned_cols=109  Identities=20%  Similarity=0.306  Sum_probs=97.3

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG--  143 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g--  143 (283)
                      |.||||||+|||++.|.++|+|+++        |+++++|||||||+|+|+|.++++++..+++..+++++..+.+.|  
T Consensus         1 p~vsviip~~n~~~~l~~~L~sl~~--------q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~   72 (196)
T cd02520           1 PGVSILKPLCGVDPNLYENLESFFQ--------QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN   72 (196)
T ss_pred             CCeEEEEecCCCCccHHHHHHHHHh--------ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC
Confidence            5699999999999999999999998        677789999999999999999999998888744577777665544  


Q ss_pred             -HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       144 -k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                       ++.++|.|+++++|||++++|+|+.++|++|+++++.+.
T Consensus        73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~  112 (196)
T cd02520          73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLM  112 (196)
T ss_pred             HhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhh
Confidence             677899999999999999999999999999999999984

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>PRK10063 putative glycosyl transferase; Provisional

Probab=99.94  E-value=2.8e-26  Score=193.50  Aligned_cols=118  Identities=21%  Similarity=0.342  Sum_probs=96.0

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG  145 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~  145 (283)
                      |.||||||+||+++.|+++|+|+.++..     |++.++|||||||||+|+|.++++++..+.   +++++..+ +.|.+
T Consensus         1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~-----~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~~-~~G~~   71 (248)
T PRK10063          1 MLLSVITVAFRNLEGIVKTHASLRHLAQ-----DPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSEP-DNGIY   71 (248)
T ss_pred             CeEEEEEEeCCCHHHHHHHHHHHHHHHh-----CCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEECC-CCCHH
Confidence            5799999999999999999999986433     456789999999999999999998875432   58888765 77999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD  193 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~  193 (283)
                      .|+|.|++.|+||||+++|+|+.+.|+.++.+ ..+...+...+++|.
T Consensus        72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~-~~~~~~~~~~~v~g~  118 (248)
T PRK10063         72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANFV-RQLKMQKDNAMIIGD  118 (248)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCcccCcCHHHHH-HHHHhCCCCeEEEee
Confidence            99999999999999999999999999886644 444444333344444

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=99.94  E-value=5.5e-26  Score=203.61  Aligned_cols=116  Identities=28%  Similarity=0.351  Sum_probs=102.1

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEeCCCCcchHHHHHHHHHHcCC-CcEEEEEcC-
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLG-  139 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~-  139 (283)
                      +..|+||||||+|||++.|++||+|+++        |+++ ++|||||||+|+|+|.++++++.++++. .++++++.+ 
T Consensus        37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~--------q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~  108 (384)
T TIGR03469        37 EAWPAVVAVVPARNEADVIGECVTSLLE--------QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP  108 (384)
T ss_pred             CCCCCEEEEEecCCcHhHHHHHHHHHHh--------CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC
Confidence            4578899999999999999999999998        5665 6999999999999999999999877653 268888753 


Q ss_pred             ---CCCCHHHHHHHHHHHcC-----CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          140 ---RNHGKGEAIRKGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       140 ---~~~gk~~a~n~g~~~a~-----~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                         .+.||+.|+|.|+++++     +|+++++|+|+.++|++++++++.+++.+.
T Consensus       109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~  163 (384)
T TIGR03469       109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGL  163 (384)
T ss_pred             CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence               23689999999999999     999999999999999999999999987543

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=99.93  E-value=9.5e-26  Score=184.34  Aligned_cols=120  Identities=24%  Similarity=0.382  Sum_probs=106.4

Q ss_pred             EEEEeecCCC--CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346           69 SLIIPAFNEE--HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG  145 (283)
Q Consensus        69 sviip~~ne~--~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~  145 (283)
                      ||+||+||++  +.|++||+|+++        |++.+.||||||||| +|+|.++++++.++++   ++++..++|.|++
T Consensus         1 sviip~~n~~~~~~l~~~l~Sl~~--------q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~   69 (201)
T cd04195           1 SVLMSVYIKEKPEFLREALESILK--------QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLG   69 (201)
T ss_pred             CEEEEccccchHHHHHHHHHHHHh--------cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHH
Confidence            6999999998  489999999998        677789999999998 7889999988877654   8899988899999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecC
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS  199 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  199 (283)
                      .|+|.|+++++|||++++|+|+.++|++|+++++.++++++..++.+.....+.
T Consensus        70 ~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  123 (201)
T cd04195          70 KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDS  123 (201)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECC
Confidence            999999999999999999999999999999999999988888777776655443

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=99.93  E-value=2e-25  Score=193.78  Aligned_cols=111  Identities=23%  Similarity=0.285  Sum_probs=97.1

Q ss_pred             EEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCC--ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346           69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG  145 (283)
Q Consensus        69 sviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~  145 (283)
                      |||||+||++ +.|.+||+|+++        |++.  .+|||||||||+|+|.+.+.+.......+++++++.+.|.|++
T Consensus         1 SIIIp~~N~~~~~l~~~l~Sl~~--------~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~   72 (299)
T cd02510           1 SVIIIFHNEALSTLLRTVHSVIN--------RTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLI   72 (299)
T ss_pred             CEEEEEecCcHHHHHHHHHHHHh--------cCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHH
Confidence            7999999999 999999999998        3333  4699999999999999988763222212389999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      .|+|.|+++|+||||+|+|+|+.++|+||+++++.+.+++..
T Consensus        73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~  114 (299)
T cd02510          73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT  114 (299)
T ss_pred             HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence            999999999999999999999999999999999999987765

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=99.93  E-value=4.4e-26  Score=191.93  Aligned_cols=115  Identities=16%  Similarity=0.228  Sum_probs=97.3

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC--ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      |.||||||+|||++.|.++|+|+.+        |+++  .+|||||||+|+|+|.++++++... +..++.++.+..+.|
T Consensus         1 p~vsIiIp~~Ne~~~l~~~l~sl~~--------~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G   71 (241)
T cd06427           1 PVYTILVPLYKEAEVLPQLIASLSA--------LDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRT   71 (241)
T ss_pred             CeEEEEEecCCcHHHHHHHHHHHHh--------CcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCc
Confidence            5799999999999999999999988        4443  5999999999999999999887532 112455666666789


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc-CCccc
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV-GRKEY  189 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~-~~~~~  189 (283)
                      ++.|+|.|+++++||||+++|+|+.++|+++.++++.+.+. ++.++
T Consensus        72 ~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~  118 (241)
T cd06427          72 KPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLAC  118 (241)
T ss_pred             hHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999999999999999999999865 44333

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=99.93  E-value=3.1e-24  Score=188.24  Aligned_cols=132  Identities=45%  Similarity=0.739  Sum_probs=111.8

Q ss_pred             CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcC
Q 023346           62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLG  139 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~  139 (283)
                      ....|.+|||||+|||++.|+++|+++.+++.+...+++..++|||||||||+|+|.++++++.+++  +..+++++..+
T Consensus        66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~  145 (333)
T PTZ00260         66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL  145 (333)
T ss_pred             CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence            5578899999999999999999999999877643223345589999999999999999999988764  33369999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHH--cCCccccccc
Q 023346          140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA--VGRKEYNHGD  193 (283)
Q Consensus       140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~--~~~~~~~~~~  193 (283)
                      .|.|++.|+|.|+++++||+|+++|+|+..+|+.+.++++.+.+  .++.+++.|.
T Consensus       146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs  201 (333)
T PTZ00260        146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS  201 (333)
T ss_pred             CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence            99999999999999999999999999999999999999999976  3344444443

>PRK10073 putative glycosyl transferase; Provisional

Probab=99.93  E-value=2.6e-25  Score=194.87  Aligned_cols=112  Identities=23%  Similarity=0.377  Sum_probs=103.6

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      .|.||||||+||+++.|++||+|+++        |++.++|||||||||+|+|.++++++.++++  ++++++.+ |.|.
T Consensus         5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~--------Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~--~i~vi~~~-n~G~   73 (328)
T PRK10073          5 TPKLSIIIPLYNAGKDFRAFMESLIA--------QTWTALEIIIVNDGSTDNSVEIAKHYAENYP--HVRLLHQA-NAGV   73 (328)
T ss_pred             CCeEEEEEeccCCHHHHHHHHHHHHh--------CCCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEECC-CCCh
Confidence            57899999999999999999999998        7788999999999999999999999988887  89999864 9999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      +.|+|.|++.|+||||+|+|+|+.+.|++++++++.+.+.+.+
T Consensus        74 ~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~d  116 (328)
T PRK10073         74 SVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLD  116 (328)
T ss_pred             HHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999988765433

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=99.93  E-value=2.7e-25  Score=185.95  Aligned_cols=121  Identities=23%  Similarity=0.327  Sum_probs=97.5

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCC
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHG  143 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~g  143 (283)
                      |+||||||+|||++.|.++|+|+++|      +++...+||||+|| |+|+|.++++++..++.  ..+++.+...++.|
T Consensus         1 p~vSViIp~yNe~~~l~~~L~sl~~q------~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G   73 (232)
T cd06437           1 PMVTVQLPVFNEKYVVERLIEAACAL------DYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTG   73 (232)
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHhc------CCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCC
Confidence            46999999999999999999999982      12334589999998 99999999998766542  23677777666666


Q ss_pred             -HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       144 -k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                       |+.|+|.|+++++||||+++|+|+.++|++|+++...+ .+++.+++.+..
T Consensus        74 ~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~~~  124 (232)
T cd06437          74 YKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRW  124 (232)
T ss_pred             CchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCCeEEEecce
Confidence             89999999999999999999999999999999977655 455655555543

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=99.93  E-value=1.3e-25  Score=186.21  Aligned_cols=110  Identities=21%  Similarity=0.285  Sum_probs=96.8

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc----CCCCCH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL----GRNHGK  144 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~----~~~~gk  144 (283)
                      ||||+||+++.|++||+|+++        |+++ ++|||||||||+|+|.++++++..+.+..+++++..    +.+.|.
T Consensus         1 ViIp~yn~~~~l~~~l~sl~~--------q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~   72 (219)
T cd06913           1 IILPVHNGEQWLDECLESVLQ--------QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGV   72 (219)
T ss_pred             CEEeecCcHHHHHHHHHHHHh--------CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccH
Confidence            699999999999999999998        5555 699999999999999999999888766456777653    345799


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      +.|+|.|++.++|||++|+|+|+.++|+++++++..+.+++..
T Consensus        73 ~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~  115 (219)
T cd06913          73 GYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNS  115 (219)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999988876653

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=99.92  E-value=5.5e-25  Score=185.49  Aligned_cols=122  Identities=23%  Similarity=0.385  Sum_probs=105.7

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..|+||||||+|||++.|+.+++++.+++      ++..++|||||||||+|+|.++++++..+++...++++..++|.|
T Consensus         7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~------~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G   80 (243)
T PLN02726          7 GAMKYSIIVPTYNERLNIALIVYLIFKAL------QDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLG   80 (243)
T ss_pred             CCceEEEEEccCCchhhHHHHHHHHHHHh------ccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCC
Confidence            46789999999999999999998887643      234489999999999999999999998877655788888888999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      ++.|+|.|+++++|||++++|+|+.++|++|+++++.+.++ +..++.|
T Consensus        81 ~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~g  128 (243)
T PLN02726         81 LGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRET-GADIVTG  128 (243)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhc-CCcEEEE
Confidence            99999999999999999999999999999999999998764 3334444

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=99.92  E-value=2.1e-24  Score=205.90  Aligned_cols=117  Identities=16%  Similarity=0.254  Sum_probs=100.8

Q ss_pred             CCCceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 023346           63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN  141 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~  141 (283)
                      ...|+|||+||+|||+. .+++++.++++      ++|+..++||+|+||||+|+|.++++++       +++++++++|
T Consensus       257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~------~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n  323 (852)
T PRK11498        257 SLWPTVDIFVPTYNEDLNVVKNTIYASLG------IDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTH  323 (852)
T ss_pred             CCCCcEEEEEecCCCcHHHHHHHHHHHHh------ccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCC
Confidence            45689999999999985 56788888877      2345557999999999999999888765       6888887755


Q ss_pred             -CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          142 -HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       142 -~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                       .||++|+|.|+++++||||+++|+|+.+++++|++++..|.++|+.+++.+
T Consensus       324 ~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQt  375 (852)
T PRK11498        324 EHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQT  375 (852)
T ss_pred             CcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEc
Confidence             569999999999999999999999999999999999999988888776654

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.92  E-value=2.1e-24  Score=177.72  Aligned_cols=121  Identities=24%  Similarity=0.318  Sum_probs=107.7

Q ss_pred             EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346           69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      |||||+||+++.|+++|+|+++        |+++++|||||||||+|+|.++++++..+++ ..++++..+.+.|++.++
T Consensus         1 sIvIp~yn~~~~l~~~l~sl~~--------q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~   71 (214)
T cd04196           1 AVLMATYNGEKYLREQLDSILA--------QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNF   71 (214)
T ss_pred             CEEEEecCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHH
Confidence            6999999999999999999998        6677899999999999999999999988875 467888888899999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeec
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD  198 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  198 (283)
                      |.|++.++|||++++|+|+.+.|++|.++++.+...+...++.+.....+
T Consensus        72 n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  121 (214)
T cd04196          72 ESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVD  121 (214)
T ss_pred             HHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEEC
Confidence            99999999999999999999999999999999777777666666554433

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=99.91  E-value=1.3e-24  Score=174.78  Aligned_cols=108  Identities=27%  Similarity=0.518  Sum_probs=98.8

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      ||||+||+++.|.++|+++.+++.     |++.++|||||||||+|+|.++++.+..+.+  +++++...+|.|++.|+|
T Consensus         1 viIp~~n~~~~l~~~l~sl~~~~~-----~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~i~~i~~~~n~G~~~a~n   73 (181)
T cd04187           1 IVVPVYNEEENLPELYERLKAVLE-----SLGYDYEIIFVDDGSTDRTLEILRELAARDP--RVKVIRLSRNFGQQAALL   73 (181)
T ss_pred             CEEeecCchhhHHHHHHHHHHHHH-----hcCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEecCCCCcHHHHH
Confidence            689999999999999999988665     4566899999999999999999999988776  899999888999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      .|++++++|+++++|+|+.++|++|+++++.+...
T Consensus        74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~  108 (181)
T cd04187          74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEG  108 (181)
T ss_pred             HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999986543

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=99.91  E-value=2.5e-24  Score=175.19  Aligned_cols=116  Identities=23%  Similarity=0.376  Sum_probs=100.5

Q ss_pred             EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346           69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      |||||+||+++.++++|+|+.+        |+++++|||||||+|+|+|.++++++..+     +.++...++.|++.++
T Consensus         1 sivi~~~n~~~~l~~~l~sl~~--------q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~   67 (202)
T cd06433           1 SIITPTYNQAETLEETIDSVLS--------QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAM   67 (202)
T ss_pred             CEEEeccchHHHHHHHHHHHHh--------CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHH
Confidence            6999999999999999999998        67778999999999999999999887553     3344455689999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceee
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV  197 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (283)
                      |.|++++++||++++|+|+.+.++++.+++..+...++..+++|.....
T Consensus        68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~  116 (202)
T cd06433          68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLV  116 (202)
T ss_pred             HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEE
Confidence            9999999999999999999999999999998887777777666665443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=99.91  E-value=4.4e-24  Score=178.37  Aligned_cols=117  Identities=19%  Similarity=0.282  Sum_probs=100.7

Q ss_pred             ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346           66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH  142 (283)
Q Consensus        66 p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~  142 (283)
                      |.||||||+||++ ..++++|+|++.        |++++  +|||||||||+|+|.++++++..++   +++++..+.+.
T Consensus         1 p~vsviip~~n~~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~   69 (234)
T cd06421           1 PTVDVFIPTYNEPLEIVRKTLRAALA--------IDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNR   69 (234)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHh--------cCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCC
Confidence            5699999999986 578999999998        66777  9999999999999999999887654   35666666554


Q ss_pred             -CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346          143 -GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD  193 (283)
Q Consensus       143 -gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~  193 (283)
                       ++++++|.|+++++|||++++|+|+.++|++|+++++.+.++++.+++.+.
T Consensus        70 ~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~  121 (234)
T cd06421          70 HAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP  121 (234)
T ss_pred             CCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence             478899999999999999999999999999999999999887776665554

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=99.90  E-value=4.2e-23  Score=197.45  Aligned_cols=121  Identities=25%  Similarity=0.351  Sum_probs=99.8

Q ss_pred             CCCceEEEEEeecCCCCCh-HHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch--------------HHHHHHHHHH
Q 023346           63 PAEKYISLIIPAFNEEHRL-PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT--------------KRVAFDFVRK  127 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l-~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t--------------~~~~~~~~~~  127 (283)
                      +..|.|||+||+|||+..+ +++++++++      ++|+..++||+|+||||||+|              .+.++++.++
T Consensus       128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~------~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~  201 (713)
T TIGR03030       128 EEWPTVDVFIPTYNEDLEIVATTVLAAKN------MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRK  201 (713)
T ss_pred             ccCCeeEEEEcCCCCCHHHHHHHHHHHHh------CCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence            4568899999999998755 678988877      223444799999999999987              3455566555


Q ss_pred             cCCCcEEEEEcCCC-CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          128 YTVDNVRIILLGRN-HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       128 ~~~~~~~~~~~~~~-~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      .   +++++.+++| .+|++|+|.|+++++||+++++|+|+.++|++|++++..|.++++.+.+.+
T Consensus       202 ~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqt  264 (713)
T TIGR03030       202 L---GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQT  264 (713)
T ss_pred             c---CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeC
Confidence            4   5889988776 469999999999999999999999999999999999999988887765543

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>KOG2977 consensus Glycosyltransferase [General function prediction only]

Probab=99.90  E-value=5.7e-23  Score=168.03  Aligned_cols=202  Identities=44%  Similarity=0.690  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeccCCCCCCCCCCCCCCCCC-CceEEEEEeecCCCCChHHHHHHHHH
Q 023346           12 LVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPA-EKYISLIIPAFNEEHRLPGALDETLN   90 (283)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~vsviip~~ne~~~l~~~l~s~~~   90 (283)
                      +.+...+++.++..++...+..+..-.+.+....+.++.+......|...+.+ ...+|||||+|||+..|+..++....
T Consensus        12 ~~l~a~v~~~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~   91 (323)
T KOG2977|consen   12 TILVAKVLLKFLSVYLFESHLPRPALENEETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVD   91 (323)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCccccccceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHH
Confidence            33444444444444444466666555566666677777777767777766553 34899999999999999999999999


Q ss_pred             HHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCC
Q 023346           91 YLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK  170 (283)
Q Consensus        91 ~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~  170 (283)
                      .++......+..++||+||||||+|.|.+++-++..++...+++|+...+|.||++|...|+-+++|++++|.|||..-.
T Consensus        92 ~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTk  171 (323)
T KOG2977|consen   92 YLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATK  171 (323)
T ss_pred             HHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCcc
Confidence            88876555556799999999999999999999999787777999999999999999999999999999999999998876


Q ss_pred             hhhHHHHHHHHHHcCCcccccccceeecCccccCCCceeeecccccccc-hhhhhccccc
Q 023346          171 VTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-KALATVQYCD  229 (283)
Q Consensus       171 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~  229 (283)
                      -..++++-+.+.+....                .....+.+|++.+++. +....+++.+
T Consensus       172 f~d~ekLe~al~~~~~p----------------~~r~~va~GsrahLe~~~a~a~rs~~r  215 (323)
T KOG2977|consen  172 FADLEKLEKALNDKAGP----------------GPRDDVACGSRAHLENTEAVAKRSVIR  215 (323)
T ss_pred             CCCHHHHHHHHHhhcCC----------------CCCCceeecCHHHhhccHHHHHHhHhh
Confidence            66677777776543210                0112488999999887 7777777666

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=99.90  E-value=1.6e-23  Score=175.57  Aligned_cols=114  Identities=18%  Similarity=0.281  Sum_probs=95.9

Q ss_pred             EEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC-HH
Q 023346           69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG-KG  145 (283)
Q Consensus        69 sviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~~g-k~  145 (283)
                      |||||+|||+ +.++++|+|+.+        |+++++|||||||+|+|+|. +.++++.++.+ .+++++...++.| ++
T Consensus         1 siiip~~ne~~~~l~~~l~sl~~--------q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~   71 (236)
T cd06435           1 SIHVPCYEEPPEMVKETLDSLAA--------LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKA   71 (236)
T ss_pred             CeeEeeCCCcHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCch
Confidence            7999999998 689999999987        77888999999999999985 66777765544 3688888776667 79


Q ss_pred             HHHHHHHHHcC--CCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          146 EAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       146 ~a~n~g~~~a~--~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      .|+|.|++++.  +|+++++|+|+.++|++|.++++.++ .++.+++.+
T Consensus        72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~  119 (236)
T cd06435          72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQA  119 (236)
T ss_pred             HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEec
Confidence            99999999975  79999999999999999999999986 455554443

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.90  E-value=1e-23  Score=175.43  Aligned_cols=109  Identities=24%  Similarity=0.291  Sum_probs=95.1

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKG  145 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~  145 (283)
                      ||||+||+++.|++||+|+++        |++++  +|||||||||+|+|.++++ +....+..+++++..+  .+.|++
T Consensus         1 viip~~n~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~   71 (229)
T cd04192           1 VVIAARNEAENLPRLLQSLSA--------LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKK   71 (229)
T ss_pred             CEEEecCcHHHHHHHHHHHHh--------CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhH
Confidence            699999999999999999988        66666  9999999999999999987 4444443478888776  478999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      .++|.|++++++||++++|+|+.++|++|+++++.+.+++..
T Consensus        72 ~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~  113 (229)
T cd04192          72 NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIG  113 (229)
T ss_pred             HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence            999999999999999999999999999999999988765544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=99.90  E-value=5.9e-23  Score=172.96  Aligned_cols=108  Identities=26%  Similarity=0.467  Sum_probs=97.3

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCC--CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKS--FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      ++|||||+||+++.+.++|+++.+        |.+  .++|||||||+|+|+|.+.++++.++.+  .++++..+ +.|+
T Consensus         1 ~~sIiip~~n~~~~l~~~l~sl~~--------q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~--~v~~i~~~-~~~~   69 (249)
T cd02525           1 FVSIIIPVRNEEKYIEELLESLLN--------QSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDP--RIRLIDNP-KRIQ   69 (249)
T ss_pred             CEEEEEEcCCchhhHHHHHHHHHh--------ccCCCCccEEEEEeCCCCccHHHHHHHHHhcCC--eEEEEeCC-CCCc
Confidence            389999999999999999999987        444  5899999999999999999999987766  78999876 6689


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +.|+|.|++.+++|+++++|+|+.++|++|+++++.+.+.+
T Consensus        70 ~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~  110 (249)
T cd02525          70 SAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTG  110 (249)
T ss_pred             hHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999886643

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=99.89  E-value=1.2e-22  Score=163.38  Aligned_cols=104  Identities=23%  Similarity=0.371  Sum_probs=90.4

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      ||||+||+++.++++|+|+.+        |++.++||||+||+|+|+|.++++++....+.....+...+.+.|++.++|
T Consensus         1 ivip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n   72 (182)
T cd06420           1 LIITTYNRPEALELVLKSVLN--------QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRN   72 (182)
T ss_pred             CEEeecCChHHHHHHHHHHHh--------ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHH
Confidence            689999999999999999998        667789999999999999999999887654422344444444568999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQI  181 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~  181 (283)
                      .|++.++|||++++|+|+.++|++|+++++.+
T Consensus        73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~  104 (182)
T cd06420          73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELA  104 (182)
T ss_pred             HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence            99999999999999999999999999999887

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=99.89  E-value=1.8e-24  Score=180.30  Aligned_cols=120  Identities=31%  Similarity=0.442  Sum_probs=90.0

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG--  143 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g--  143 (283)
                      |+|+||||+||+.+.+.++|+|+++        |+++++||+|+||+++|++.+.++++.+.++..+++++..+.+.|  
T Consensus         1 P~v~Vvip~~~~~~~l~~~l~sl~~--------~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~   72 (228)
T PF13641_consen    1 PRVSVVIPAYNEDDVLRRCLESLLA--------QDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPG   72 (228)
T ss_dssp             --EEEE--BSS-HHHHHHHHHHHTT--------SHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHH
T ss_pred             CEEEEEEEecCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcc
Confidence            5699999999999999999999998        445689999999999999999999988888744679988876544  


Q ss_pred             -HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       144 -k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                       |+.++|.|++++++|+++++|+|+.++|++|+++++.+ ..++.+++.+..
T Consensus        73 ~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~  123 (228)
T PF13641_consen   73 GKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPV  123 (228)
T ss_dssp             HHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEE
T ss_pred             hHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeE
Confidence             89999999999999999999999999999999999999 667776666554

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.88  E-value=4e-22  Score=157.06  Aligned_cols=111  Identities=29%  Similarity=0.472  Sum_probs=97.6

Q ss_pred             EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346           69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      |||||+||+++.|.++|+|+.+        |+..++|||||||||+|+|.++++++.+..  .+++++..+++.|++.++
T Consensus         1 Svvip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~~~~~~~~~~~~~--~~i~~i~~~~n~g~~~~~   70 (169)
T PF00535_consen    1 SVVIPTYNEAEYLERTLESLLK--------QTDPDFEIIVVDDGSTDETEEILEEYAESD--PNIRYIRNPENLGFSAAR   70 (169)
T ss_dssp             EEEEEESS-TTTHHHHHHHHHH--------HSGCEEEEEEEECS-SSSHHHHHHHHHCCS--TTEEEEEHCCCSHHHHHH
T ss_pred             CEEEEeeCCHHHHHHHHHHHhh--------ccCCCEEEEEeccccccccccccccccccc--cccccccccccccccccc
Confidence            7999999999999999999999        467799999999999999999999987733  389999999999999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccc
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY  189 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~  189 (283)
                      |.|+++++++|++++|+|+.+.|++|+++++.+.+.+...+
T Consensus        71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~  111 (169)
T PF00535_consen   71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVV  111 (169)
T ss_dssp             HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEE
T ss_pred             cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEE
Confidence            99999999999999999999999999999999999766543

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=99.88  E-value=7.5e-23  Score=165.05  Aligned_cols=104  Identities=26%  Similarity=0.340  Sum_probs=88.2

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCC--CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKS--FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ||||+|||++.|.++|+++.+        |.+  ..+|||||||||+|+|.++++++..     .+.+...+.+.||+.|
T Consensus         1 VvIp~~ne~~~i~~~l~sl~~--------~~~p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~a   67 (183)
T cd06438           1 ILIPAHNEEAVIGNTVRSLKA--------QDYPRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYA   67 (183)
T ss_pred             CEEeccchHHHHHHHHHHHHh--------cCCCCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHH
Confidence            699999999999999999987        344  5799999999999999998876521     3334344568899999


Q ss_pred             HHHHHHHc-----CCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          148 IRKGMLHS-----RGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       148 ~n~g~~~a-----~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      +|.|++++     ++|+++++|+|+.++|++|.++++.+.++++
T Consensus        68 ln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~  111 (183)
T cd06438          68 LDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGAR  111 (183)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCC
Confidence            99999876     4999999999999999999999999986544

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.88  E-value=2.1e-22  Score=164.75  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=95.3

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      ||||+||+++.|+++|+|+.+        |++++.||||+||||+|+|.++++++....   +++++..++|.|.+.++|
T Consensus         1 viI~~~n~~~~l~~~l~sl~~--------q~~~~~eiiivD~~s~d~t~~~~~~~~~~~---~i~~~~~~~n~g~~~~~n   69 (202)
T cd04185           1 AVVVTYNRLDLLKECLDALLA--------QTRPPDHIIVIDNASTDGTAEWLTSLGDLD---NIVYLRLPENLGGAGGFY   69 (202)
T ss_pred             CEEEeeCCHHHHHHHHHHHHh--------ccCCCceEEEEECCCCcchHHHHHHhcCCC---ceEEEECccccchhhHHH
Confidence            689999999999999999998        677789999999999999999999886554   388999999999999999


Q ss_pred             HHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346          150 KGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       150 ~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  188 (283)
                      .|++.+   ++|+++|+|+|+.++|++++++++.+. .+..+
T Consensus        70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~  110 (202)
T cd04185          70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQ  110 (202)
T ss_pred             HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCce
Confidence            999875   699999999999999999999999987 44443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=99.88  E-value=4.4e-22  Score=157.68  Aligned_cols=121  Identities=26%  Similarity=0.427  Sum_probs=104.8

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      ||||+||+++.|.++|+|+++        |.+.++||+||||+|+|+|.+.++++....+ ..+.++..+++.|++.++|
T Consensus         1 Viip~~n~~~~l~~~l~sl~~--------q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n   71 (180)
T cd06423           1 IIVPAYNEEAVIERTIESLLA--------LDYPKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALN   71 (180)
T ss_pred             CeecccChHHHHHHHHHHHHh--------CCCCceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHH
Confidence            689999999999999999998        6667899999999999999999988766543 2467777778999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecC
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS  199 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  199 (283)
                      .|++++++++++++|+|+.+.|++|++++..+...++..++.+.......
T Consensus        72 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~  121 (180)
T cd06423          72 AGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNG  121 (180)
T ss_pred             HHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecC
Confidence            99999999999999999999999999998888877777666666554433

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=99.87  E-value=1.8e-21  Score=164.55  Aligned_cols=123  Identities=24%  Similarity=0.406  Sum_probs=105.9

Q ss_pred             CCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346           61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL  138 (283)
Q Consensus        61 ~~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~  138 (283)
                      .....|++|||||+||++..+.++|+|+.+        |++++  +|||||||+|+|+|.++++++...    +++++..
T Consensus        24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~   91 (251)
T cd06439          24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLA--------LDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRF   91 (251)
T ss_pred             CCCCCCEEEEEEecCCcHHHHHHHHHHHHh--------CcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEc
Confidence            345678899999999999999999999988        44544  899999999999999999887654    5888888


Q ss_pred             CCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346          139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT  196 (283)
Q Consensus       139 ~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  196 (283)
                      +++.|++.|+|.|++++++||++++|+|+.++|++|+++++.+. .+..+++++....
T Consensus        92 ~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~  148 (251)
T cd06439          92 PERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFA-DPSVGAVSGELVI  148 (251)
T ss_pred             CCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhc-CCCccEEEeEEEe
Confidence            88999999999999999999999999999999999999999996 3455555554443

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=5.3e-21  Score=174.54  Aligned_cols=114  Identities=32%  Similarity=0.517  Sum_probs=104.1

Q ss_pred             CceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCC
Q 023346           65 EKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNH  142 (283)
Q Consensus        65 ~p~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~~~  142 (283)
                      .|+++|+||+|||++ .++++++++.+        |+|+.+||+||||+|+|+|.+++++...+++ ++++++.. .++.
T Consensus        53 ~p~vsviiP~ynE~~~~~~~~l~s~~~--------~dyp~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~  123 (439)
T COG1215          53 LPKVSVIIPAYNEEPEVLEETLESLLS--------QDYPRYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNG  123 (439)
T ss_pred             CCceEEEEecCCCchhhHHHHHHHHHh--------CCCCCceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCc
Confidence            589999999999998 99999999998        8899999999999999999999999998874 26777643 4689


Q ss_pred             CHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       143 gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      ||+.|+|.|++.+++|+|+++|+|..++||+|.+++..|.+.+..
T Consensus       124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~  168 (439)
T COG1215         124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG  168 (439)
T ss_pred             cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence            999999999999999999999999999999999999999877665

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=99.87  E-value=3.8e-21  Score=168.28  Aligned_cols=116  Identities=31%  Similarity=0.484  Sum_probs=100.6

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..+++|||||+|||++.|+++++++.+.+.     |...++|||||||||+|+|.++++++.++.. .++..+...+|.|
T Consensus         4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~-----~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G   77 (325)
T PRK10714          4 PIKKVSVVIPVYNEQESLPELIRRTTAACE-----SLGKEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYG   77 (325)
T ss_pred             CCCeEEEEEcccCchhhHHHHHHHHHHHHH-----hCCCCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCC
Confidence            345699999999999999999999877544     3455799999999999999999998866532 3677777778999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      ++.|+|.|+++|+||+++++|+|...+|+.+.++++.++++.
T Consensus        78 ~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~  119 (325)
T PRK10714         78 QHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY  119 (325)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999997543

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=99.87  E-value=1.7e-21  Score=161.47  Aligned_cols=101  Identities=30%  Similarity=0.464  Sum_probs=89.1

Q ss_pred             EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 023346           68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ||||||+||+++.+.++|+|+++        |++.++||+||||+|+|+|.+++++     .  +++++..  +.|++.+
T Consensus         1 vsvii~~~n~~~~l~~~l~sl~~--------q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~~--~~g~~~a   63 (221)
T cd02522           1 LSIIIPTLNEAENLPRLLASLRR--------LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVISS--PKGRARQ   63 (221)
T ss_pred             CEEEEEccCcHHHHHHHHHHHHh--------ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEeC--CcCHHHH
Confidence            69999999999999999999998        5567899999999999999998866     2  5666654  5789999


Q ss_pred             HHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       148 ~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +|.|++.+++++++++|+|+.++|+++++++..+...+
T Consensus        64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~  101 (221)
T cd02522          64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG  101 (221)
T ss_pred             HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence            99999999999999999999999999999977775543

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=99.86  E-value=8.4e-22  Score=158.68  Aligned_cols=108  Identities=37%  Similarity=0.713  Sum_probs=98.0

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      |+||+||+++.+.++|+|+.++.+      ++..+|||||||+|+|+|.++++++..+.+  .++++..+++.|++.|+|
T Consensus         1 iii~~~n~~~~l~~~l~sl~~~~~------~~~~~eiivvd~~s~d~~~~~~~~~~~~~~--~~~~~~~~~n~G~~~a~n   72 (185)
T cd04179           1 VVIPAYNEEENIPELVERLLAVLE------EGYDYEIIVVDDGSTDGTAEIARELAARVP--RVRVIRLSRNFGKGAAVR   72 (185)
T ss_pred             CeecccChHhhHHHHHHHHHHHhc------cCCCEEEEEEcCCCCCChHHHHHHHHHhCC--CeEEEEccCCCCccHHHH
Confidence            689999999999999999998433      145899999999999999999999988887  778999999999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      .|++.++|||++++|+|+.+.|++|++++..+.+.+
T Consensus        73 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~  108 (185)
T cd04179          73 AGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGG  108 (185)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999865543

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=99.86  E-value=4.3e-22  Score=166.59  Aligned_cols=115  Identities=20%  Similarity=0.349  Sum_probs=97.5

Q ss_pred             eEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346           67 YISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG  145 (283)
Q Consensus        67 ~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~  145 (283)
                      .||||||+|||+ +.+.+||+++.+        |+  ++|||||||+|+|+|.+.+.+.. ..+  .++++. .++.||+
T Consensus         1 ~isVvIp~~ne~~~~l~~~l~sl~~--------q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~~-~~~~g~~   66 (235)
T cd06434           1 DVTVIIPVYDEDPDVFRECLRSILR--------QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVIT-VPHPGKR   66 (235)
T ss_pred             CeEEEEeecCCChHHHHHHHHHHHh--------CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEEe-cCCCChH
Confidence            389999999999 999999999998        55  78999999999999998875432 223  566665 4589999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT  196 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  196 (283)
                      .|+|.|++.+++|+|+++|+|+.++|++|+++++.+. +++.+++.+....
T Consensus        67 ~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~  116 (235)
T cd06434          67 RALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRI  116 (235)
T ss_pred             HHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEe
Confidence            9999999999999999999999999999999999998 6666666555433

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=99.86  E-value=5e-21  Score=158.89  Aligned_cols=107  Identities=27%  Similarity=0.523  Sum_probs=97.6

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCC-CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKS-FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~-~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      ||||+||+++.|+++|+++.+|        .+ ..+|||||||||+|+|.++++++.++.+  .++++..+.+.|++.|+
T Consensus         1 ViIp~yn~~~~l~~~l~sl~~q--------~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i~~~~~~~n~G~~~a~   70 (224)
T cd06442           1 IIIPTYNERENIPELIERLDAA--------LKGIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAY   70 (224)
T ss_pred             CeEeccchhhhHHHHHHHHHHh--------hcCCCeEEEEEeCCCCCChHHHHHHHHHhCC--ceEEEecCCCCChHHHH
Confidence            6999999999999999999983        33 5799999999999999999999988877  78999988899999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      |.|+++|+||+++++|+|+.++|++|+++++.+...+.
T Consensus        71 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~  108 (224)
T cd06442          71 IEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGA  108 (224)
T ss_pred             HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999755433

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=99.86  E-value=4.3e-21  Score=158.23  Aligned_cols=112  Identities=47%  Similarity=0.828  Sum_probs=100.3

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      ||||+||+++.|+++|+++.+++..    |+...+|||||||||+|+|.++++++.++++. .++++..+.|.|++.|+|
T Consensus         1 iiip~yN~~~~l~~~l~~l~~~~~~----~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~~   75 (211)
T cd04188           1 VVIPAYNEEKRLPPTLEEAVEYLEE----RPSFSYEIIVVDDGSKDGTAEVARKLARKNPA-LIRVLTLPKNRGKGGAVR   75 (211)
T ss_pred             CEEcccChHHHHHHHHHHHHHHHhc----cCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC-cEEEEEcccCCCcHHHHH
Confidence            6999999999999999999997653    35568999999999999999999999887762 358999888999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      .|++.|+||||+++|+|+.++|+++.++++.+.+.+.
T Consensus        76 ~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~  112 (211)
T cd04188          76 AGMLAARGDYILFADADLATPFEELEKLEEALKTSGY  112 (211)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999765443

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.86  E-value=2.1e-21  Score=153.16  Aligned_cols=106  Identities=25%  Similarity=0.418  Sum_probs=95.6

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      |+||+||+.+.+.++++|+.+        |.++++||+|+||||+|++.+.+++..   +  +++++..+++.|++.|+|
T Consensus         1 vii~~~~~~~~l~~~l~sl~~--------~~~~~~~iiivdd~s~~~~~~~~~~~~---~--~~~~~~~~~~~g~~~a~n   67 (166)
T cd04186           1 IIIVNYNSLEYLKACLDSLLA--------QTYPDFEVIVVDNASTDGSVELLRELF---P--EVRLIRNGENLGFGAGNN   67 (166)
T ss_pred             CEEEecCCHHHHHHHHHHHHh--------ccCCCeEEEEEECCCCchHHHHHHHhC---C--CeEEEecCCCcChHHHhh
Confidence            689999999999999999998        555789999999999999999887653   2  588888888999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  188 (283)
                      .|++.+++++++++|+|+.++|++++++++.+.+.++..
T Consensus        68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  106 (166)
T cd04186          68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVG  106 (166)
T ss_pred             HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCce
Confidence            999999999999999999999999999999988876654

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=99.85  E-value=6.6e-21  Score=173.95  Aligned_cols=111  Identities=17%  Similarity=0.278  Sum_probs=94.0

Q ss_pred             CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--
Q 023346           62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--  139 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--  139 (283)
                      ..+.|.++|+||+|||++.|+++|++++.+       ++|+++||+|++|+|+|+|.+.++++.+++|  +++++..+  
T Consensus        62 ~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~-------ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p--~v~~vv~~~~  132 (504)
T PRK14716         62 SVPEKRIAIFVPAWREADVIGRMLEHNLAT-------LDYENYRIFVGTYPNDPATLREVDRLAARYP--RVHLVIVPHD  132 (504)
T ss_pred             cCCCCceEEEEeccCchhHHHHHHHHHHHc-------CCCCCeEEEEEECCCChhHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            345788999999999999999999998752       4678999999999999999999999999998  67655443  


Q ss_pred             CCCCHHHHHHHHHHHc------CC---CEEEEEeCCCCCChhhHHHHHHHH
Q 023346          140 RNHGKGEAIRKGMLHS------RG---ELLLMLDADGATKVTDLEKLESQI  181 (283)
Q Consensus       140 ~~~gk~~a~n~g~~~a------~~---d~i~~~D~D~~~~~~~l~~~~~~~  181 (283)
                      ...||+.|+|.|++.+      +|   |+++++|||+.++|++|+.+...+
T Consensus       133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~  183 (504)
T PRK14716        133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL  183 (504)
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc
Confidence            2356999999998754      45   999999999999999999876554

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=99.85  E-value=1.1e-20  Score=162.43  Aligned_cols=118  Identities=28%  Similarity=0.343  Sum_probs=94.6

Q ss_pred             EEEEeecCCCCC--hHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---CC
Q 023346           69 SLIIPAFNEEHR--LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---HG  143 (283)
Q Consensus        69 sviip~~ne~~~--l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~---~g  143 (283)
                      |||||++++...  |.+.|.+++.++...   +....+|||||||||++.+.+.++++.++..  ..+++..+.+   .|
T Consensus         1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~---~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~f~   75 (281)
T PF10111_consen    1 SIIIPVRNRSERPDILERLRNCLESLSQF---QSDPDFEIIVVDDGSSDEFDEELKKLCEKNG--FIRYIRHEDNGEPFS   75 (281)
T ss_pred             CEEEEecCCccchHHHHHHHHHHHHHHhc---CCCCCEEEEEEECCCchhHHHHHHHHHhccC--ceEEEEcCCCCCCcC
Confidence            799999999864  556666666655542   4577999999999999999888888877765  4446665533   59


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHH---HHHHcCCccccc
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES---QIHAVGRKEYNH  191 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~---~~~~~~~~~~~~  191 (283)
                      ++.|+|.|+++|++|+|+|+|+|+.++|++++++++   .+.+++....++
T Consensus        76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~  126 (281)
T PF10111_consen   76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVY  126 (281)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEE
Confidence            999999999999999999999999999999999999   666665544433

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=99.85  E-value=6.8e-21  Score=165.07  Aligned_cols=124  Identities=23%  Similarity=0.314  Sum_probs=100.3

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEE-EcCCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-LLGRN  141 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~-~~~~~  141 (283)
                      +..|++|||||+|||++.|.++|+++.+++.     + ....|||||||||+|+|.++++++..+... ...++ ..+.|
T Consensus        28 ~~~~~vSVVIPayNee~~I~~~l~sl~~~~~-----~-~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~~~~~~n  100 (306)
T PRK13915         28 KAGRTVSVVLPALNEEETVGKVVDSIRPLLM-----E-PLVDELIVIDSGSTDATAERAAAAGARVVS-REEILPELPPR  100 (306)
T ss_pred             cCCCCEEEEEecCCcHHHHHHHHHHHHHHhc-----c-CCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhhhccccC
Confidence            3567899999999999999999999988443     1 336799999999999999999887433210 11222 23568


Q ss_pred             CCHHHHHHHHHHHcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCccccccc
Q 023346          142 HGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGD  193 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~~~~~~~  193 (283)
                      .||+.|+|.|++.++||+++++|+|+. ++|+++.++++.+..+++..++.|.
T Consensus       101 ~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~  153 (306)
T PRK13915        101 PGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF  153 (306)
T ss_pred             CCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence            999999999999999999999999997 8999999999999877776665553

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=99.84  E-value=5.8e-21  Score=159.94  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=88.1

Q ss_pred             EEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 023346           70 LIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        70 viip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      +|||+||++ +.+.+||+|+.+        |   ..|||||||+|+|.+....+.   ..  .+++++..++|.|++.|+
T Consensus         1 ~vI~~yn~~~~~l~~~l~sl~~--------q---~~~iivvDn~s~~~~~~~~~~---~~--~~i~~i~~~~n~G~~~a~   64 (237)
T cd02526           1 AVVVTYNPDLSKLKELLAALAE--------Q---VDKVVVVDNSSGNDIELRLRL---NS--EKIELIHLGENLGIAKAL   64 (237)
T ss_pred             CEEEEecCCHHHHHHHHHHHhc--------c---CCEEEEEeCCCCccHHHHhhc---cC--CcEEEEECCCceehHHhh
Confidence            589999999 999999999998        4   579999999998887765433   22  379999999999999999


Q ss_pred             HHHHHHcCC---CEEEEEeCCCCCChhhHHHHH---HHHHHcCCcccc
Q 023346          149 RKGMLHSRG---ELLLMLDADGATKVTDLEKLE---SQIHAVGRKEYN  190 (283)
Q Consensus       149 n~g~~~a~~---d~i~~~D~D~~~~~~~l~~~~---~~~~~~~~~~~~  190 (283)
                      |.|++.+++   ||++++|+|+.++|++|++++   ..+..++..+++
T Consensus        65 N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~  112 (237)
T cd02526          65 NIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAV  112 (237)
T ss_pred             hHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEE
Confidence            999999987   999999999999999999995   444445554443

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=99.83  E-value=3.4e-20  Score=150.59  Aligned_cols=110  Identities=25%  Similarity=0.382  Sum_probs=91.2

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC---CCCCHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG---RNHGKGE  146 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~---~~~gk~~  146 (283)
                      ||||+|||++.|+++|+|+.+        |. +++|||||||+|+|+|.++++ +....+  ++++++..   .+.||+.
T Consensus         1 ViIp~~Ne~~~l~~~l~sl~~--------~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~--~v~~i~~~~~~~~~Gk~~   68 (191)
T cd06436           1 VLVPCLNEEAVIQRTLASLLR--------NK-PNFLVLVIDDASDDDTAGIVR-LAITDS--RVHLLRRHLPNARTGKGD   68 (191)
T ss_pred             CEEeccccHHHHHHHHHHHHh--------CC-CCeEEEEEECCCCcCHHHHHh-heecCC--cEEEEeccCCcCCCCHHH
Confidence            699999999999999999998        55 689999999999999999997 433334  78888753   4689999


Q ss_pred             HHHHHHHHcC-----------CCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          147 AIRKGMLHSR-----------GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       147 a~n~g~~~a~-----------~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      |+|.|++.++           +|+|+++|+|+.++|++|+++...+. .+....+.+
T Consensus        69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~  124 (191)
T cd06436          69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQS  124 (191)
T ss_pred             HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEee
Confidence            9999999875           37999999999999999999887775 455443333

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=99.82  E-value=7.9e-20  Score=159.07  Aligned_cols=124  Identities=22%  Similarity=0.254  Sum_probs=109.0

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      .|.+++||++||..+.+.+||+++.+        |++...++++|||+|+|++.+.++...  .+  +++++.+++|.|.
T Consensus         2 ~~~i~~iiv~yn~~~~l~~~l~~l~~--------~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~   69 (305)
T COG1216           2 MPKISIIIVTYNRGEDLVECLASLAA--------QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGF   69 (305)
T ss_pred             CcceEEEEEecCCHHHHHHHHHHHhc--------CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccc
Confidence            46799999999999999999999998        777788888999999999999886543  44  8999999999999


Q ss_pred             HHHHHHHHHHcCCC---EEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCc
Q 023346          145 GEAIRKGMLHSRGE---LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST  200 (283)
Q Consensus       145 ~~a~n~g~~~a~~d---~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (283)
                      +++.|.|++.|.++   |++++|.|..++|++|+++++.++..+...++.+.....+..
T Consensus        70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~  128 (305)
T COG1216          70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDES  128 (305)
T ss_pred             hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCC
Confidence            99999999998654   999999999999999999999999998887766666655543

>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]

Probab=99.82  E-value=1.1e-19  Score=140.00  Aligned_cols=115  Identities=27%  Similarity=0.447  Sum_probs=101.3

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG  145 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~  145 (283)
                      ++.||++|+|||.+.|+-++.-+.....     +...++|||||||+|.|+|.+++++++..+..+++.+..+....|.+
T Consensus         3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~-----e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLg   77 (238)
T KOG2978|consen    3 IKYSVILPTYNEKENLPIITRLIAKYMS-----EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLG   77 (238)
T ss_pred             cceeEEeccccCCCCCeeeHHHHHhhhh-----hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccch
Confidence            4689999999999999854444444332     45778999999999999999999999988888899999999899999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      .|.-.|+++|+|+|++++|||-..+|.++.++++...++.
T Consensus        78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~  117 (238)
T KOG2978|consen   78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGN  117 (238)
T ss_pred             HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccC
Confidence            9999999999999999999999999999999999776654

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=99.81  E-value=2.2e-19  Score=149.96  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=92.1

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE  146 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~  146 (283)
                      +|||+||+|||++.|++||+|+..        |.   .|||||||||+|+|.++++++       +++++.. .+.|.+.
T Consensus         1 ~isvii~~~Ne~~~l~~~l~sl~~--------~~---~eiivvD~gStD~t~~i~~~~-------~~~v~~~-~~~g~~~   61 (229)
T cd02511           1 TLSVVIITKNEERNIERCLESVKW--------AV---DEIIVVDSGSTDRTVEIAKEY-------GAKVYQR-WWDGFGA   61 (229)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHhc--------cc---CEEEEEeCCCCccHHHHHHHc-------CCEEEEC-CCCChHH
Confidence            389999999999999999999976        32   399999999999999998754       6788887 6899999


Q ss_pred             HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       147 a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      ++|.|++.+++|||+++|+|..++|++++++.+.+.+++..
T Consensus        62 ~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~  102 (229)
T cd02511          62 QRNFALELATNDWVLSLDADERLTPELADEILALLATDDYD  102 (229)
T ss_pred             HHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999887653

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.78  E-value=1.3e-17  Score=158.25  Aligned_cols=115  Identities=15%  Similarity=0.202  Sum_probs=96.8

Q ss_pred             CCCCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346           59 SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL  138 (283)
Q Consensus        59 ~~~~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~  138 (283)
                      ....+..|.|||+||+|||+.++.+++++++..       ++|+++||++++|++|+.|.++++++++++|  +++++..
T Consensus        56 ~l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~-------ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~  126 (727)
T PRK11234         56 ELYKPDEKPLAIMVPAWNETGVIGNMAELAATT-------LDYENYHIFVGTYPNDPATQADVDAVCARFP--NVHKVVC  126 (727)
T ss_pred             hcccCCCCCEEEEEecCcchhhHHHHHHHHHHh-------CCCCCeEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEe
Confidence            344556788999999999999999999998751       5788899999999999999999999999998  6665554


Q ss_pred             CC--CCCHHHHHHHHHHHc---------CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          139 GR--NHGKGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       139 ~~--~~gk~~a~n~g~~~a---------~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                      ++  +.||+.|+|.|++.+         +.+++++.|||+.++|++|+ +++.+.+
T Consensus       127 ~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~  181 (727)
T PRK11234        127 ARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE  181 (727)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC
Confidence            43  789999999999987         34678889999999999998 5666654

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=3.2e-18  Score=139.39  Aligned_cols=107  Identities=35%  Similarity=0.561  Sum_probs=94.5

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      .|++|||||+||+++.|.++|+|+++        |++..+|||||||||+|+|.++++++....+  .+.......+.|+
T Consensus         2 ~~~~siiip~~n~~~~l~~~l~s~~~--------q~~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~   71 (291)
T COG0463           2 MPKVSVVIPTYNEEEYLPEALESLLN--------QTYKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGL   71 (291)
T ss_pred             CccEEEEEeccchhhhHHHHHHHHHh--------hhhcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCCh
Confidence            57799999999999999999999999        5555689999999999999999999987653  5667777789999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                      +.|+|.|+..+.+++++++|+|+. .++.+..+.....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~  108 (291)
T COG0463          72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG  108 (291)
T ss_pred             HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence            999999999999999999999999 9999888555443

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=99.77  E-value=5.5e-19  Score=149.02  Aligned_cols=103  Identities=20%  Similarity=0.242  Sum_probs=81.4

Q ss_pred             EEEeecCCC-CChHHHHHHHHHHHHHh--hhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346           70 LIIPAFNEE-HRLPGALDETLNYLQQR--AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE  146 (283)
Q Consensus        70 viip~~ne~-~~l~~~l~s~~~~~~~~--~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~  146 (283)
                      ||||+|||+ .+|+++|+|+++|.+..  .-.....++||+||||||+|                        .|.||..
T Consensus         1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~   56 (244)
T cd04190           1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD   56 (244)
T ss_pred             CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence            799999997 79999999999943310  00000238999999999999                        2455554


Q ss_pred             -------HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346          147 -------AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT  196 (283)
Q Consensus       147 -------a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  196 (283)
                             ++|.++..+++|+++++|+|+.++|++|+++++.|..+|+.+.+.|....
T Consensus        57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~  113 (244)
T cd04190          57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHP  113 (244)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEE
Confidence                   67888888999999999999999999999999999888887666666544

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=99.77  E-value=1.8e-18  Score=148.81  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             ecCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Q 023346           74 AFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGM  152 (283)
Q Consensus        74 ~~ne-~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~  152 (283)
                      +||. .+.|+++|+|+.+        |   ..|||||||||+|+  +.++++....+  ++++++.++|.|.+.|+|.|+
T Consensus         2 tyn~~~~~l~~~l~sl~~--------q---~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~Gi   66 (281)
T TIGR01556         2 TFNPDLEHLGELITSLPK--------Q---VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQGL   66 (281)
T ss_pred             ccCccHHHHHHHHHHHHh--------c---CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHHH
Confidence            7997 4788999999887        3   35999999998765  22233333444  899999999999999999999


Q ss_pred             HHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          153 LHS---RGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       153 ~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +.|   .+|||+++|+|+.+++++|+++++.+++.+
T Consensus        67 ~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~  102 (281)
T TIGR01556        67 DASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN  102 (281)
T ss_pred             HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence            998   689999999999999999999999998765

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=99.75  E-value=2.5e-16  Score=148.92  Aligned_cols=124  Identities=17%  Similarity=0.209  Sum_probs=97.7

Q ss_pred             CCCCceEEEEEeecCCCC-----ChHHHHHHHHHHHHHhhhcCCC-CceEEEEEeCCCCcchHHH----HHHHHHHcC-C
Q 023346           62 DPAEKYISLIIPAFNEEH-----RLPGALDETLNYLQQRAAKDKS-FTYEVLIIDDGSSDGTKRV----AFDFVRKYT-V  130 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~-----~l~~~l~s~~~~~~~~~~~~~~-~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~  130 (283)
                      .+..|+|+|+||+|||+.     .++.+++|+.+        +.+ +++|++|+||+++|++...    +.++.++++ .
T Consensus       120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~--------~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~  191 (691)
T PRK05454        120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAA--------TGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGE  191 (691)
T ss_pred             CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh--------cCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCC
Confidence            355788999999999985     36666666665        333 5799999999999987643    345555553 2


Q ss_pred             CcEEEEEcCCCCC-HHHHHHHHHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346          131 DNVRIILLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD  193 (283)
Q Consensus       131 ~~~~~~~~~~~~g-k~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~  193 (283)
                      .++.+.++..|.| |++++|.+++.  +++||++++|||..+++|++.+++..|+.+|+.+++.+.
T Consensus       192 ~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~  257 (691)
T PRK05454        192 GRIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTL  257 (691)
T ss_pred             CcEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCC
Confidence            4788887776765 99999999998  567999999999999999999999999988887766543

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=99.74  E-value=7.5e-17  Score=136.20  Aligned_cols=124  Identities=17%  Similarity=0.225  Sum_probs=97.4

Q ss_pred             EEEEEeecCCCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHH----HHHHHHHHcC-CCcEEEEEcCCC
Q 023346           68 ISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR----VAFDFVRKYT-VDNVRIILLGRN  141 (283)
Q Consensus        68 vsviip~~ne~~~-l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~~~~~~~~~~  141 (283)
                      |||+||+|||+.. +.++|+++.+.+..+   +.++++||+|+||++++....    .+.++.++++ ..++++++.+++
T Consensus         1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~---~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~   77 (254)
T cd04191           1 TAIVMPVYNEDPARVFAGLRAMYESLAKT---GLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRREN   77 (254)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHhc---CCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence            6999999999987 888888888765432   234789999999987765432    2233444443 247889998888


Q ss_pred             CC-HHHHHHHHHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          142 HG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       142 ~g-k~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      .| |++++|.++..  +++|+|+++|+|..++|++|.+++..|..+|+.+++.+..
T Consensus        78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~  133 (254)
T cd04191          78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAP  133 (254)
T ss_pred             CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            76 88999999987  7899999999999999999999999999888877665443

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=99.68  E-value=3.2e-16  Score=120.93  Aligned_cols=109  Identities=34%  Similarity=0.509  Sum_probs=94.2

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 023346           70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        70 viip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      |+||++|+.+.+.++++++.+        +.+.+.|++|+||++++.+.+.+.+......  ....+..+.+.|++.++|
T Consensus         1 iii~~~~~~~~l~~~l~s~~~--------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~   70 (156)
T cd00761           1 VIIPAYNEEPYLERCLESLLA--------QTYPNFEVIVVDDGSTDGTLEILEEYAKKDP--RVIRVINEENQGLAAARN   70 (156)
T ss_pred             CEEeecCcHHHHHHHHHHHHh--------CCccceEEEEEeCCCCccHHHHHHHHHhcCC--CeEEEEecCCCChHHHHH
Confidence            689999999999999999988        5557899999999999999999988865422  567777777999999999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  188 (283)
                      .+++.+.+|+++++|+|..+.|+++..++..+...++..
T Consensus        71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~  109 (156)
T cd00761          71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEAD  109 (156)
T ss_pred             HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCce
Confidence            999999999999999999999999999866666655543

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.68  E-value=1.8e-15  Score=142.31  Aligned_cols=114  Identities=11%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 023346           62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN  141 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~  141 (283)
                      ....|.+||+||+|||+++|++++++++++       .+|+++||+|+.+..+.+|.+.++++...+|  +++++..+.+
T Consensus        67 ~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~-------ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~  137 (703)
T PRK15489         67 ERDEQPLAIMVPAWKEYDVIAKMIENMLAT-------LDYRRYVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHD  137 (703)
T ss_pred             ccCCCceEEEEeCCCcHHHHHHHHHHHHhc-------CCCCCeEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCC
Confidence            445678999999999999999999998752       5688999999755555589999999888887  7887776544


Q ss_pred             --CCHHHHHHHHHHHc-------CCCE--EEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          142 --HGKGEAIRKGMLHS-------RGEL--LLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       142 --~gk~~a~n~g~~~a-------~~d~--i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                        .||+.|+|.|+..+       ++++  +++.|||+.++|+.|..+ +.+...+
T Consensus       138 gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~  191 (703)
T PRK15489        138 GPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK  191 (703)
T ss_pred             CCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc
Confidence              78999999999875       3344  899999999999999876 5554333

>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.46  E-value=2.7e-12  Score=109.35  Aligned_cols=130  Identities=18%  Similarity=0.236  Sum_probs=113.5

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH  142 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~  142 (283)
                      +..|.||||.|..+-.+.+-..+++...        ..|+++|++++-+.++|+..++++++.++||....+++-..+..
T Consensus        82 ~~LPgVSiikPl~G~d~nl~~Nlesfft--------s~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~v  153 (431)
T KOG2547|consen   82 PKLPGVSIIKPLKGVDPNLYHNLESFFT--------SQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKV  153 (431)
T ss_pred             CCCCCceEEeecccCCchhHHhHHHHHh--------hccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEccccc
Confidence            3688899999999999999999999988        34669999999999999999999999999997788888887777


Q ss_pred             C---HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCc
Q 023346          143 G---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST  200 (283)
Q Consensus       143 g---k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (283)
                      |   |-.++--|.+.++.|+|++.|+|..+.||.+-.|...+.++...+.+.+.....|..
T Consensus       154 g~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~  214 (431)
T KOG2547|consen  154 GLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQ  214 (431)
T ss_pred             ccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccc
Confidence            7   555555588999999999999999999999999999999988888777766655543

>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.2e-12  Score=112.41  Aligned_cols=113  Identities=20%  Similarity=0.210  Sum_probs=93.9

Q ss_pred             CCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCC
Q 023346           64 AEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRN  141 (283)
Q Consensus        64 ~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~  141 (283)
                      ..|.-||||..|||+ ..+-+++.|+++.....      .-.|||+|||+|.|.+. ..+.++    +  +++++++.++
T Consensus       122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~------li~EiILVDD~S~Dped~~~L~ri----~--kvr~LRN~~R  189 (559)
T KOG3738|consen  122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSPEH------LIHEIILVDDFSQDPEDGKLLKRI----P--KVRVLRNNER  189 (559)
T ss_pred             CCCCceEEEEeccHHHHHHHHHHHHHHcCChHH------hhheeEEecCCCCChHHHHHHhhh----h--eeeeecccch
Confidence            467789999999996 56778888888743322      24699999999998764 333333    3  8999999999


Q ss_pred             CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346          142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  188 (283)
                      .|.-..+++|...|++.++.|+|+.+.+..+||+-+++.++.+...+
T Consensus       190 eGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trv  236 (559)
T KOG3738|consen  190 EGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRV  236 (559)
T ss_pred             hhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccce
Confidence            99999999999999999999999999999999999999998876653

>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=8.4e-13  Score=120.73  Aligned_cols=127  Identities=24%  Similarity=0.251  Sum_probs=105.1

Q ss_pred             CCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 023346           63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR  140 (283)
Q Consensus        63 ~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~  140 (283)
                      ...|..||||+.|||+ ..+.+++.|+++....      ..--|||+|||+|+..- ...++++.+.+.  .+++++.++
T Consensus       139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~------~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~--~v~i~r~~~  210 (578)
T KOG3736|consen  139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPP------YLLKEIILVDDFSDRDHLKDKLEEYVKRFS--KVRILRTKK  210 (578)
T ss_pred             cccCCCceEEEEecCCCcchhheEEeehccCCh------hHeEEEEEeecCcchhhhhhhhHHHHhhhc--ceeEEeecc
Confidence            4578899999999996 5677788888874432      23569999999998765 566888888877  499999999


Q ss_pred             CCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeec
Q 023346          141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD  198 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  198 (283)
                      +.|.-.|+..|.+.|+||+++|+|+.+....+||+-+++.+...... ++++.....+
T Consensus       211 R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~t-vv~PvID~Id  267 (578)
T KOG3736|consen  211 REGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKT-VVCPVIDVID  267 (578)
T ss_pred             hhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCce-eecceEEeec
Confidence            99999999999999999999999999999999999999999887665 4455444444

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=99.36  E-value=8e-12  Score=108.44  Aligned_cols=110  Identities=18%  Similarity=0.163  Sum_probs=84.6

Q ss_pred             EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC----CCC
Q 023346           68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR----NHG  143 (283)
Q Consensus        68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~----~~g  143 (283)
                      +.|+|.+||+.+.++++|++++++-      ....+.+|+|.+||+++++.+.++.+.     ..++++..+.    +.|
T Consensus         2 ~PVlv~ayNRp~~l~r~LesLl~~~------p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~   70 (334)
T cd02514           2 IPVLVIACNRPDYLRRMLDSLLSYR------PSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVN   70 (334)
T ss_pred             cCEEEEecCCHHHHHHHHHHHHhcc------ccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccC
Confidence            4799999999999999999999821      156689999999999998888887763     1466665532    211


Q ss_pred             ----------HH----HHHHHHHHHcCCCEEEEEeCCCCCChhhH---HHHHHHHHHcCCcc
Q 023346          144 ----------KG----EAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQIHAVGRKE  188 (283)
Q Consensus       144 ----------k~----~a~n~g~~~a~~d~i~~~D~D~~~~~~~l---~~~~~~~~~~~~~~  188 (283)
                                -+    .|+|.++...+++.++++++|+.+.|+++   ++++..+++++...
T Consensus        71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~  132 (334)
T cd02514          71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW  132 (334)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE
Confidence                      12    38999998889999999999999999955   66666666665544

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.2e-11  Score=103.50  Aligned_cols=118  Identities=21%  Similarity=0.245  Sum_probs=98.7

Q ss_pred             CCCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEcC
Q 023346           62 DPAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLG  139 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~~  139 (283)
                      +...|..||||..+||. ..|-+++.|++.....      .---|||+|||-|+.+ ..+.+.++...+. .-++|++++
T Consensus       151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~------~~l~eivlvDDfSdKehLkekLDeYv~~fn-GlVkV~Rne  223 (603)
T KOG3737|consen  151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPR------KYLAEIVLVDDFSDKEHLKEKLDEYVKLFN-GLVKVFRNE  223 (603)
T ss_pred             cccCCcceEEEEEecCccHHHHHHHHHHHhcCcH------HhhheEEEeccCCccHHHHHHHHHHHHHhc-CEEEEEecc
Confidence            34678899999999996 6788889998873222      1246999999998866 5577888877765 468999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      ++.|.-.|+..|.++|.|++++|+||.|.+..+||.-+++.+.++..
T Consensus       224 ~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRt  270 (603)
T KOG3737|consen  224 RREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRT  270 (603)
T ss_pred             hhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCce
Confidence            99999999999999999999999999999999999999999977543

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=98.77  E-value=7e-07  Score=80.09  Aligned_cols=130  Identities=20%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             eEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHH-----HHHH-cCCCcEEEEEcC
Q 023346           67 YISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-----FVRK-YTVDNVRIILLG  139 (283)
Q Consensus        67 ~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-----~~~~-~~~~~~~~~~~~  139 (283)
                      +-.|++|+|||.. .+-.-|+...+++..   .-....+++.|+.| |.|+.....++     +.++ ....++-+-++.
T Consensus       145 rTAilmPiynEd~~rVfAgLrA~~eSla~---Tg~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr  220 (736)
T COG2943         145 RTAILMPIYNEDVNRVFAGLRATYESLAA---TGHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYRRRR  220 (736)
T ss_pred             ceeEEeeccccCHHHHHHHHHHHHHHHHh---hCCcccceEEEEcC-CCCchhhhhHHHHHHHHHHHhCCCCceeeehHh
Confidence            3689999999963 222333443333332   12456899999988 44544433332     2222 223467676666


Q ss_pred             CCCC-HHHHHHHHHHH--cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCc
Q 023346          140 RNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST  200 (283)
Q Consensus       140 ~~~g-k~~a~n~g~~~--a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (283)
                      +|.| |++++..=.+.  ..+++.+++|+|..+.++.+.++++.++.+|+++.....+....+.
T Consensus       221 ~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~  284 (736)
T COG2943         221 RNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGD  284 (736)
T ss_pred             hhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcc
Confidence            6755 77777665555  4679999999999999999999999999999998776655554433

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=98.65  E-value=1.7e-07  Score=76.91  Aligned_cols=111  Identities=17%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---C
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---H  142 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~---~  142 (283)
                      +.++++||.--. +..+.|-..++..+.....=++....++|+++..+.-.  ..++.+....+  ++.++.....   .
T Consensus         2 ~~~~~iiPv~~S-~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d--~~i~~~i~~~~--~~~yl~~~s~~~F~   76 (346)
T COG4092           2 QPNGEIIPVAES-EELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD--RLIRSYIDPMP--RVLYLDFGSPEPFA   76 (346)
T ss_pred             CCcceEeecchh-hccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH--HHHHHHhcccc--ceEEEecCCCcccc
Confidence            457899998543 33334444444422211122567789999998876322  44556665555  6666665432   2


Q ss_pred             CHHHHHHHHHHHcC----CCEEEEEeCCCCCChhhHHHHHHHH
Q 023346          143 GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQI  181 (283)
Q Consensus       143 gk~~a~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~~~~~~  181 (283)
                      ..+...|.|+..+.    +++|+|+|.||....+-.++++.-+
T Consensus        77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~  119 (346)
T COG4092          77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIA  119 (346)
T ss_pred             chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHH
Confidence            24667788887765    8999999999999988888777443

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=98.46  E-value=1.2e-07  Score=75.72  Aligned_cols=59  Identities=17%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             EEEEcCCCC---CHHHHHHHHHHH-cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccc
Q 023346          134 RIILLGRNH---GKGEAIRKGMLH-SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD  193 (283)
Q Consensus       134 ~~~~~~~~~---gk~~a~n~g~~~-a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~  193 (283)
                      +++..+...   +|..++..++++ +++|+++++|+|..++|++|++++..+++ |+.+++.+.
T Consensus         5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglVt~~   67 (175)
T PF13506_consen    5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLVTGL   67 (175)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEEEec
Confidence            355554443   499999999998 99999999999999999999999999987 555554443

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=98.45  E-value=8.9e-07  Score=63.43  Aligned_cols=82  Identities=27%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC---H-HHHHHH
Q 023346           75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG---K-GEAIRK  150 (283)
Q Consensus        75 ~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g---k-~~a~n~  150 (283)
                      +||+..|++.|+..++          -.--+++|+||||+|+|.++++++    +  .+.++.......   . ...++.
T Consensus         1 rne~~~L~~wl~~~~~----------lG~d~i~i~d~~s~D~t~~~l~~~----~--~v~i~~~~~~~~~~~~~~~~~~~   64 (97)
T PF13704_consen    1 RNEADYLPEWLAHHLA----------LGVDHIYIYDDGSTDGTREILRAL----P--GVGIIRWVDPYRDERRQRAWRNA   64 (97)
T ss_pred             CChHHHHHHHHHHHHH----------cCCCEEEEEECCCCccHHHHHHhC----C--CcEEEEeCCCccchHHHHHHHHH
Confidence            5888888888877755          223479999999999999998776    2  566666543221   2 233344


Q ss_pred             HHHH-cCCCEEEEEeCCCCCChh
Q 023346          151 GMLH-SRGELLLMLDADGATKVT  172 (283)
Q Consensus       151 g~~~-a~~d~i~~~D~D~~~~~~  172 (283)
                      ..+. ..++|++++|+|-.+.+.
T Consensus        65 ~~~~~~~~dWvl~~D~DEfl~~~   87 (97)
T PF13704_consen   65 LIERAFDADWVLFLDADEFLVPP   87 (97)
T ss_pred             HHHhCCCCCEEEEEeeeEEEecC
Confidence            4444 478999999999887543

>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B

Probab=98.15  E-value=4e-06  Score=69.26  Aligned_cols=87  Identities=20%  Similarity=0.167  Sum_probs=60.7

Q ss_pred             EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 023346           68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ||||+++ |.+....+|++++.+        +..++.|.|-+++                          .....+.+.+
T Consensus         1 isiI~c~-n~~~~~~~~~~~i~~--------~~~~~~~~i~i~~--------------------------~~~~~s~~~~   45 (217)
T PF13712_consen    1 ISIIICV-NDEELYEECLRSIKR--------LIGPPGELIEIDN--------------------------VRNAKSMAAA   45 (217)
T ss_dssp             EEEEEEE-S-HHHHHHHHHHHHH--------TT--TEEEEEEE---------------------------SSS-S-TTTH
T ss_pred             CEEEEEE-CCHHHHHHHHHHHHh--------hCCCCceEEEEec--------------------------cCCCcCHHHH
Confidence            4666654 666667788888776        4455667665543                          3334788899


Q ss_pred             HHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCccc
Q 023346          148 IRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGRKEY  189 (283)
Q Consensus       148 ~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~~~  189 (283)
                      .|.|+++|+++|++|++.|..+ .++++..+++.|+++++.++
T Consensus        46 yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~   88 (217)
T PF13712_consen   46 YNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGM   88 (217)
T ss_dssp             HHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEE
T ss_pred             HHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccE
Confidence            9999999999999999999998 68999999999988877644

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2

Probab=98.10  E-value=6.8e-05  Score=69.17  Aligned_cols=127  Identities=19%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             CceEEEEEeecCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC------CCcchHHHHHHHHHHc------C--
Q 023346           65 EKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG------SSDGTKRVAFDFVRKY------T--  129 (283)
Q Consensus        65 ~p~vsviip~~ne-~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~~------~--  129 (283)
                      .+.+-.+||+||| ++.|+++|+|+..+      +++..+-=|+||.||      .+-.|.+++.++....      +  
T Consensus        24 ~~~~i~~v~cy~E~~~~l~~tldsl~~~------~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~   97 (527)
T PF03142_consen   24 DKFVICLVPCYSEGEEELRTTLDSLATT------DYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEP   97 (527)
T ss_pred             CceEEEEEccccCChHHHHHHHHHHHhc------CCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCC
Confidence            3446679999999 57888899998762      233334445555553      3445888887765510      0  


Q ss_pred             --------------------------C------------CcEEEEE----------cCCCCCHHHHHHHHHH--------
Q 023346          130 --------------------------V------------DNVRIIL----------LGRNHGKGEAIRKGML--------  153 (283)
Q Consensus       130 --------------------------~------------~~~~~~~----------~~~~~gk~~a~n~g~~--------  153 (283)
                                                .            +-+.++.          .++|+||.-..-..+.        
T Consensus        98 ~~~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~  177 (527)
T PF03142_consen   98 LSYVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFN  177 (527)
T ss_pred             cceEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcC
Confidence                                      0            1123333          3668887754322111        


Q ss_pred             ---------------H------cCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceee
Q 023346          154 ---------------H------SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV  197 (283)
Q Consensus       154 ---------------~------a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (283)
                                     .      ...|+++.+|||+.+.|+.+.++++.+.+++..+.++|.....
T Consensus       178 ~~~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~  242 (527)
T PF03142_consen  178 NPMTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRID  242 (527)
T ss_pred             CCCchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEc
Confidence                           1      1359999999999999999999999999999988888864443

4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=98.02  E-value=0.00018  Score=66.73  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             CCCceEEEEEeecCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-Ccc-----hHHHHHHHHHHcCCCcEEE
Q 023346           63 PAEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDG-----TKRVAFDFVRKYTVDNVRI  135 (283)
Q Consensus        63 ~~~p~vsviip~~ne-~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~~~~  135 (283)
                      .....|.||||..+. .+.+.+-|+...+.+.     ++..+..++||..++ .|.     ..+.++++..+++..++.+
T Consensus       244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l-----~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~  318 (499)
T PF05679_consen  244 TESTRVHIIVPLSGREADWFRRFLENFEKVCL-----ETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKW  318 (499)
T ss_pred             cCCCEEEEEEEecCccHHHHHHHHHHHHHHhc-----ccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEE
Confidence            445789999999999 7777777777555332     245577777777665 322     2357778888887778999


Q ss_pred             EEcC-CCCCHHHHHHHHHHHcC-CCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          136 ILLG-RNHGKGEAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       136 ~~~~-~~~gk~~a~n~g~~~a~-~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      +... ++...+.++..|++... .++++++|.|..+++++|.++-..-..+
T Consensus       319 i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g  369 (499)
T PF05679_consen  319 ISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG  369 (499)
T ss_pred             EEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC
Confidence            9987 77889999999998654 5788899999999999999987665443

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]

Probab=97.90  E-value=9.1e-05  Score=63.94  Aligned_cols=109  Identities=12%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CcchH--HHHHHHHHHcCCCcEEEEEc
Q 023346           62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTK--RVAFDFVRKYTVDNVRIILL  138 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~--~~~~~~~~~~~~~~~~~~~~  138 (283)
                      .-..|.|.+++|..++.....+...++..        -...+++++|+-=|+ .|+-.  +....+..+++  ++..+..
T Consensus       225 ~i~~pgih~i~pl~gr~~~f~rf~q~~c~--------~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~--~~q~l~l  294 (494)
T KOG3588|consen  225 LIEDPGIHMIMPLRGRAAIFARFAQSICA--------RGDDRLALSVVYFGYSEDEMAKRETITSLRASFI--PVQFLGL  294 (494)
T ss_pred             cccCCCceEEEeccchHHHhhhhhHHHhc--------cCCCceEEEEEEecCCChHHHhhhHHHHHhhcCC--ceEEecc
Confidence            34566799999999999888888886665        356678888876665 33322  44556777777  7777776


Q ss_pred             CCCCCHHHHHHHHHHHcCCCE-EEEEeCCCCCChhhHHHHHHH
Q 023346          139 GRNHGKGEAIRKGMLHSRGEL-LLMLDADGATKVTDLEKLESQ  180 (283)
Q Consensus       139 ~~~~gk~~a~n~g~~~a~~d~-i~~~D~D~~~~~~~l~~~~~~  180 (283)
                      .+....+.|+-.|.+.-+.+. +.|+|-|..+..++|.+.-..
T Consensus       295 ngeFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~N  337 (494)
T KOG3588|consen  295 NGEFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLN  337 (494)
T ss_pred             cchhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhc
Confidence            666778899999999986655 556899999999999887543

>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=97.79  E-value=0.00021  Score=64.14  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=64.7

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC---
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG---  139 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~---  139 (283)
                      ...+.+-|+|-+||+...+.+||+++++.-      -..+.+.|+|..||++..+.+.++.+...     ++.++.+   
T Consensus        90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~r------p~~~~fpIiVSQDg~~~~~~~vi~~y~~~-----v~~i~~~~~~  158 (434)
T PF03071_consen   90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYR------PSAEKFPIIVSQDGDDEEVAEVIKSYGDQ-----VTYIQHPDFS  158 (434)
T ss_dssp             -------EEEEESS-TT-HHHHHHHHHHH-------S-TTTS-EEEEE-TT-HHHHHHHHGGGGG-----SEEEE-S--S
T ss_pred             cCCCcceEEEEecCCcHHHHHHHHHHHHcC------CCCCCccEEEEecCCcHHHHHHHHHhhhh-----heeeecCCcC
Confidence            345668899999999999999999999821      12356889999999999999888877432     3333322   


Q ss_pred             ------CC-CC---------HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          140 ------RN-HG---------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       140 ------~~-~g---------k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                            .. ..         ...|++..+..-+.+.++++..|..+.||+++-+.+...
T Consensus       159 ~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~  217 (434)
T PF03071_consen  159 PITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLP  217 (434)
T ss_dssp             -----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred             CceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHH
Confidence                  11 00         123344444444678999999999999999776655543

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.

>PLN02893 Cellulose synthase-like protein

Probab=97.76  E-value=0.0004  Score=66.13  Aligned_cols=41  Identities=15%  Similarity=0.078  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346          143 GKGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA  183 (283)
Q Consensus       143 gk~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~  183 (283)
                      -|++|+|.+++.    ++|++|+.+|+|..+ .|+.+++.+-.|.+
T Consensus       281 ~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~D  326 (734)
T PLN02893        281 FKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLD  326 (734)
T ss_pred             cccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcC
Confidence            399999999996    689999999999996 69999999988864

>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function

Probab=97.65  E-value=0.0014  Score=55.36  Aligned_cols=125  Identities=17%  Similarity=0.112  Sum_probs=82.9

Q ss_pred             CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC--cchHHHHHHHHHHcC--------CC
Q 023346           62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS--DGTKRVAFDFVRKYT--------VD  131 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~--------~~  131 (283)
                      ....++|-|+.|..|.+..+.+.++.+.+      +.||...+.+-++...++  |.|.+.+++...+..        -.
T Consensus        21 ~~~~e~VLILtplrna~~~l~~y~~~L~~------L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~   94 (269)
T PF03452_consen   21 ARNKESVLILTPLRNAASFLPDYFDNLLS------LTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFR   94 (269)
T ss_pred             cccCCeEEEEEecCCchHHHHHHHHHHHh------CCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcc
Confidence            45677899999999999999888888887      446777788866666666  888888875543321        12


Q ss_pred             cEEEEEcCCC--------------------CCHHHHHHHHHHHc---CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346          132 NVRIILLGRN--------------------HGKGEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       132 ~~~~~~~~~~--------------------~gk~~a~n~g~~~a---~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~  187 (283)
                      .+.+++.+-.                    .--+.|+|..+..+   ..+||+++|+|..- +|+.|+.+    -.++.+
T Consensus        95 ~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl----i~~~kd  170 (269)
T PF03452_consen   95 SITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL----IAHDKD  170 (269)
T ss_pred             eEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH----HhCCCC
Confidence            5666654311                    11356778877765   45999999999887 44445444    444444


Q ss_pred             ccccccceee
Q 023346          188 EYNHGDSVTV  197 (283)
Q Consensus       188 ~~~~~~~~~~  197 (283)
                       ++.+.+...
T Consensus       171 -IivPn~~~~  179 (269)
T PF03452_consen  171 -IIVPNCWRR  179 (269)
T ss_pred             -EEccceeec
Confidence             444444444

These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=97.64  E-value=0.00015  Score=59.32  Aligned_cols=79  Identities=16%  Similarity=0.245  Sum_probs=59.3

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE  146 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~  146 (283)
                      +|+||||-+|+++.|...|..+..-+..|     ...+.|+|+..-                         .....+++.
T Consensus         3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq-----~~~~~i~vi~Q~-------------------------~~~~FNR~~   52 (219)
T cd00899           3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQ-----QLDYRIFVIEQV-------------------------GNFRFNRAK   52 (219)
T ss_pred             ceEEEEecCCHHHHHHHHHHHHHHHHHhc-----CCcEEEEEEEec-------------------------CCccchhhh
Confidence            58999999999999988888888766643     346677776531                         012467888


Q ss_pred             HHHHHHHHc----CCCEEEEEeCCCCCChhhHH
Q 023346          147 AIRKGMLHS----RGELLLMLDADGATKVTDLE  175 (283)
Q Consensus       147 a~n~g~~~a----~~d~i~~~D~D~~~~~~~l~  175 (283)
                      .+|.|...|    ..++++|-|.|..+..+.+.
T Consensus        53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~   85 (219)
T cd00899          53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL   85 (219)
T ss_pred             hhhHHHHHHhhcCCccEEEEecccccccCcccc
Confidence            889888766    35899999999999887743

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis

Probab=97.53  E-value=0.0027  Score=55.08  Aligned_cols=104  Identities=19%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC---cc---hHHHHHHHHHHcCCCcEEEEEcCC
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLGR  140 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~~~~~~~~~  140 (283)
                      +.+||||+.||.-   ..|+-++..+        +.+.-||||.|++.   |.   -.+.++++...-. ..+-++++..
T Consensus        51 ~maIVVP~KnE~l---~lleGVL~gI--------Ph~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r~~~~vHQkD  118 (381)
T PF09488_consen   51 KMAIVVPCKNEKL---KLLEGVLSGI--------PHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-RQIIIVHQKD  118 (381)
T ss_dssp             TEEEEEEESS--H---HHHHHHHHCS---------TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT-
T ss_pred             CcEEEEECCCCch---hhhhhhhhcC--------CCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-CceEEEecCC
Confidence            4899999999984   5578888733        33678999999877   44   2355666654322 2455555421


Q ss_pred             ----------------------CCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          141 ----------------------NHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       141 ----------------------~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                                            +.||+.++-.|+..|   ..+||.|+|||..+ |+.+.+-++.+..
T Consensus       119 p~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyi-PGaV~EYvk~yAA  185 (381)
T PF09488_consen  119 PGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYI-PGAVNEYVKDYAA  185 (381)
T ss_dssp             HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCC-cchHHHHHHHHHh
Confidence                                  368999999888665   46999999999987 4556666666654

Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=97.36  E-value=0.00013  Score=58.85  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             EEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346          159 LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT  196 (283)
Q Consensus       159 ~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  196 (283)
                      ||+++|+|+.++|++++++++.++ +|+.+++.+....
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~   37 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF   37 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe
Confidence            689999999999999999999998 6776666555543

>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni []

Probab=97.33  E-value=0.0015  Score=55.69  Aligned_cols=103  Identities=20%  Similarity=0.207  Sum_probs=76.5

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEE-------E
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI-------I  136 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~-------~  136 (283)
                      .+-..+-.|-+.||+..|+++|+|++..+.           |.|+.=+.|+|+|.+++.+++.++|. -+.+       +
T Consensus        85 ~pl~~~~~iRvKnE~~tl~~si~S~Lpai~-----------~gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~  152 (347)
T PF06306_consen   85 SPLNPWAFIRVKNEAMTLAESIESILPAID-----------EGVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVII  152 (347)
T ss_pred             CCCCcceEEEEcchhhhHHHHHHHHHHHHh-----------ccEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhc
Confidence            334478899999999999999999998654           78888888999999999999999983 2222       1


Q ss_pred             EcCCC--CCHHHHHHHHHHHc-CCCEEEEEeCCCCCChhhHHHHH
Q 023346          137 LLGRN--HGKGEAIRKGMLHS-RGELLLMLDADGATKVTDLEKLE  178 (283)
Q Consensus       137 ~~~~~--~gk~~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~~~  178 (283)
                      .+++.  -....=.|.++... +.+|++=+|+|-...+..|-+..
T Consensus       153 ~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksf  197 (347)
T PF06306_consen  153 KNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSF  197 (347)
T ss_pred             cCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhh
Confidence            11111  11333446666664 68999999999999998874443

>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function

Probab=97.27  E-value=0.0037  Score=52.07  Aligned_cols=82  Identities=17%  Similarity=0.260  Sum_probs=61.1

Q ss_pred             CCCCceEEEEEeC-CCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc---CCCEEEE--EeCCCCCChh
Q 023346           99 DKSFTYEVLIIDD-GSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS---RGELLLM--LDADGATKVT  172 (283)
Q Consensus        99 ~~~~~~eiivvdd-~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a---~~d~i~~--~D~D~~~~~~  172 (283)
                      |+..++..+|+-| ...+.-.+.++++.+..|  +++++..+ ......++..+++.+   .+++++.  +|+|+.+..+
T Consensus        54 QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~d  130 (234)
T PF11316_consen   54 QTDQDFTWLVLFDDDLPEPYRERLRDLLADYP--QFRIVFRP-PGPHRDAMRRAINAARRDGADPVLQFRLDDDDALHRD  130 (234)
T ss_pred             ccCCCeEEEEEECCCCCHHHHHHHHHHhccCC--CcEEEecC-CchHHHHHHHHHhhhccCCCCEEEEEEECCcchhhHH
Confidence            7888999998554 455556778889888888  77777766 334667777776433   3455554  5999999999


Q ss_pred             hHHHHHHHHHH
Q 023346          173 DLEKLESQIHA  183 (283)
Q Consensus       173 ~l~~~~~~~~~  183 (283)
                      +++++-+...+
T Consensus       131 FV~rlr~~a~~  141 (234)
T PF11316_consen  131 FVARLRRAAAD  141 (234)
T ss_pred             HHHHHHHHHHh
Confidence            99999998854

>PLN02195 cellulose synthase A

Probab=97.02  E-value=0.015  Score=57.06  Aligned_cols=40  Identities=15%  Similarity=0.081  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHH----cCCCEEEEEeCCCCCCh-hhHHHHHHHHHH
Q 023346          144 KGEAIRKGMLH----SRGELLLMLDADGATKV-TDLEKLESQIHA  183 (283)
Q Consensus       144 k~~a~n~g~~~----a~~d~i~~~D~D~~~~~-~~l~~~~~~~~~  183 (283)
                      |++|+|.+++.    +.+++|+.+|+|..+.+ +++++.+=.|.+
T Consensus       437 KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D  481 (977)
T PLN02195        437 KAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMD  481 (977)
T ss_pred             ccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccC
Confidence            99999999985    46999999999988865 688888877754

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=96.93  E-value=0.025  Score=56.15  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHH----cCCCEEEEEeCCCCCC-hhhHHHHHHHHHH
Q 023346          144 KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA  183 (283)
Q Consensus       144 k~~a~n~g~~~----a~~d~i~~~D~D~~~~-~~~l~~~~~~~~~  183 (283)
                      |++|+|..++.    +.++||+.+|+|..+. |..+++.+=.|-+
T Consensus       534 KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD  578 (1079)
T PLN02638        534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD  578 (1079)
T ss_pred             ccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence            99999999965    4799999999999886 9999998887764

>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase

Probab=96.93  E-value=0.015  Score=50.28  Aligned_cols=105  Identities=19%  Similarity=0.273  Sum_probs=67.8

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG  139 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~~~~~~~~  139 (283)
                      -+..||||+.||.-.   +|+-++..+        +.+.-||||.|++..+      ..+.++++..--. ..+-++++.
T Consensus        50 ~~maIVVP~KdE~l~---lleGVL~gI--------Ph~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~-r~~i~vHQk  117 (381)
T TIGR02460        50 GKTAIVVPVKNEKLH---LLEGVLSGI--------PHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLTH-RKIIIIHQK  117 (381)
T ss_pred             hCcEEEEEcCCCchh---HHhhHhhcC--------CCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhhc-CceEEEEcC
Confidence            358999999999854   477777733        3367788888876522      2244555544211 234444432


Q ss_pred             ----------------------CCCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          140 ----------------------RNHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       140 ----------------------~~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                                            -+.||+.++-.|+..|   ..+||.|+|||..++ +...+-+..+..
T Consensus       118 Dp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yAa  185 (381)
T TIGR02460       118 DPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYAA  185 (381)
T ss_pred             CHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHHh
Confidence                                  1357888888887665   469999999999885 555555555544

This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.

>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional

Probab=96.92  E-value=0.015  Score=50.60  Aligned_cols=105  Identities=18%  Similarity=0.302  Sum_probs=67.5

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG  139 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~~~~~~~~  139 (283)
                      -+..||||+.||.-.   +|+-++..+        +.+.-||||.|++.   |.   ..+.++++..--. ..+-++++.
T Consensus        51 ~~mAIVVP~KdE~l~---lleGVL~gI--------Ph~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~-r~~i~vHQk  118 (393)
T PRK14503         51 GRMAIVVPVKNERLK---LLEGVLKGI--------PHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQ-RPIIIVHQK  118 (393)
T ss_pred             hCcEEEEEcCCCchh---HHhhHhhcC--------CCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhc-CceEEEEcC
Confidence            358999999999854   477777733        23577888888755   22   2244555543221 234444432


Q ss_pred             C----------------------CCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          140 R----------------------NHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       140 ~----------------------~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                      .                      +.||+.++-.|+..|   ..+||.|+|||..++ +...+-+..+..
T Consensus       119 Dp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yAA  186 (393)
T PRK14503        119 DPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYAA  186 (393)
T ss_pred             CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHHh
Confidence            1                      357888888887665   469999999999885 555555555544

>PLN02190 cellulose synthase-like protein

Probab=96.84  E-value=0.017  Score=55.24  Aligned_cols=41  Identities=12%  Similarity=0.044  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346          144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHAV  184 (283)
Q Consensus       144 k~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~  184 (283)
                      |++|+|..++.    +.+++|+.+|+|... .|+.+++.+=.|-+.
T Consensus       270 KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~  315 (756)
T PLN02190        270 KAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK  315 (756)
T ss_pred             ccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence            99999999876    479999999999988 788888877766543

>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []

Probab=96.75  E-value=0.0019  Score=55.37  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC------
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR------  140 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~------  140 (283)
                      .|.||||+-+..      |.+.+++..+.     ..++++|||-|+...+...+.+-+       ...+.....      
T Consensus         9 ~~divi~~~~~~------l~~~~~~wr~~-----~~~~hliiv~d~~~~~~~~~p~g~-------~~~~y~~~di~~~lg   70 (348)
T PF03214_consen    9 EVDIVIPALRPN------LTDFLEEWRPF-----FSPYHLIIVQDPDPNEEIKVPEGF-------DYEVYNRNDIERVLG   70 (348)
T ss_pred             cccEEeeccccc------HHHHHHHHHHh-----hcceeEEEEeCCCccccccCCccc-------ceeeecHhhHHhhcC
Confidence            489999997643      44555554442     348999999998655544443322       233333221      


Q ss_pred             -----CCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346          141 -----NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       141 -----~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  188 (283)
                           .....+.+|.|.-.++.+|++++|+|+.+..+..-..++.+.++....
T Consensus        71 ~~~~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~  123 (348)
T PF03214_consen   71 AKTLIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENL  123 (348)
T ss_pred             CcccccccccchhhhHhhhcccceEEEEccccccccCCccceehhhhccceee
Confidence                 122446789999999999999999999999888777777777765443

It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction

>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]

Probab=96.64  E-value=0.086  Score=44.11  Aligned_cols=110  Identities=20%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             EEEEEeecCCCCChHHHHH-HHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCC--cEEEEEcCCC-CC
Q 023346           68 ISLIIPAFNEEHRLPGALD-ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVD--NVRIILLGRN-HG  143 (283)
Q Consensus        68 vsviip~~ne~~~l~~~l~-s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~--~~~~~~~~~~-~g  143 (283)
                      +=|..-.||.++.++.... ++++.+...    -..+.-|-|+++||+|+|.+.++.+.......  +-++...+.. ..
T Consensus         2 ~fIA~~l~~~~~iL~~~~~~~ll~li~~L----Gp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~   77 (241)
T PF11735_consen    2 YFIAANLYNNEDILPSLWGDALLELIRFL----GPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRD   77 (241)
T ss_pred             EEEEEEcccCHhHHHHHHHHHHHHHHHHh----CcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccc
Confidence            3455567899999988777 777766654    34578888999999999999999887443211  2223332111 11


Q ss_pred             -------------HHHHHHHHHHHc---------CCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          144 -------------KGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       144 -------------k~~a~n~g~~~a---------~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                                   .+.-+|.|++--         +.+-|+|++ |..+.+..+-+++..-.
T Consensus        78 ~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~  137 (241)
T PF11735_consen   78 EIERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRN  137 (241)
T ss_pred             cccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcC
Confidence                         357889988532         247799999 88888888777776654

It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=96.35  E-value=0.037  Score=45.74  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|.-+ ...+..+++++.+          ..-.+++||-....    +.++++..+.   +++++..+...|.+.++-.
T Consensus        20 l~~v~g-kpli~~~i~~l~~----------~~i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~   81 (229)
T cd02540          20 LHPLAG-KPMLEHVLDAARA----------LGPDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQ   81 (229)
T ss_pred             cceeCC-ccHHHHHHHHHHh----------CCCCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHH
Confidence            344434 4777777777765          22346666653222    2233333222   5777777767889999999


Q ss_pred             HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346          151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~  185 (283)
                      |+....  .+.++++++|. .+.+..+.++++.+.+.+
T Consensus        82 a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~  119 (229)
T cd02540          82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAG  119 (229)
T ss_pred             HHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC
Confidence            998765  68999999998 568899999998887643

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A

Probab=96.33  E-value=0.018  Score=43.25  Aligned_cols=79  Identities=19%  Similarity=0.355  Sum_probs=52.7

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      +.-++.||||-+|+++.|...|..+..-+..|     ...+.|+||....                         .....
T Consensus        45 ~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ-----~~~y~I~vieQ~~-------------------------~~~FN   94 (136)
T PF13733_consen   45 PRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQ-----QLDYRIFVIEQVD-------------------------NGPFN   94 (136)
T ss_dssp             -S-EEEEEEEESS-HHHHHHHHHHHHHHHHHT-----T-EEEEEEEEE-S-------------------------SS---
T ss_pred             cccceEEEEEeCCHHHHHHHHHHHHHHHHhhC-----cceEEEEEEeecc-------------------------CCCCc
Confidence            34589999999999998888888887766653     3478888886421                         12356


Q ss_pred             HHHHHHHHHHHc----CCCEEEEEeCCCCCChh
Q 023346          144 KGEAIRKGMLHS----RGELLLMLDADGATKVT  172 (283)
Q Consensus       144 k~~a~n~g~~~a----~~d~i~~~D~D~~~~~~  172 (283)
                      +|.-+|.|+..|    ..|.++|-|-|..+..+
T Consensus        95 Rg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~  127 (136)
T PF13733_consen   95 RGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND  127 (136)
T ss_dssp             HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred             hhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence            778888888776    36899999999887544

...

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=96.32  E-value=0.024  Score=44.08  Aligned_cols=96  Identities=9%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHH
Q 023346           72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK  150 (283)
Q Consensus        72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~  150 (283)
                      ++. +....++.+++.+.+.          .--+|+|+-..  +...+.+    ..   .+++++.++ ...|...++-.
T Consensus        19 ~~i-~g~~li~~~l~~l~~~----------~~~~Ivvv~~~--~~~~~~~----~~---~~~~~v~~~~~~~G~~~sl~~   78 (160)
T PF12804_consen   19 LPI-GGKPLIERVLEALREA----------GVDDIVVVTGE--EEIYEYL----ER---YGIKVVVDPEPGQGPLASLLA   78 (160)
T ss_dssp             SEE-TTEEHHHHHHHHHHHH----------TESEEEEEEST--HHHHHHH----TT---TTSEEEE-STSSCSHHHHHHH
T ss_pred             eeE-CCccHHHHHHHHhhcc----------CCceEEEecCh--HHHHHHH----hc---cCceEEEeccccCChHHHHHH
Confidence            444 6667777777777651          12478877664  2222222    22   257777775 36899999999


Q ss_pred             HHHHc-CCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCc
Q 023346          151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       151 g~~~a-~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~  187 (283)
                      |+++. ..+.++++.+|.. ++++.++++++.+++.+..
T Consensus        79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~  117 (160)
T PF12804_consen   79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPAD  117 (160)
T ss_dssp             HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTS
T ss_pred             HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCc
Confidence            99998 8999999999995 5999999999999876554

...

>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

Probab=96.29  E-value=0.089  Score=43.18  Aligned_cols=99  Identities=11%  Similarity=0.118  Sum_probs=65.0

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEc--CCC
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILL--GRN  141 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~--~~~  141 (283)
                      |.|-||.|+|.+.....+ |..+...+..      -+++.-|||+|+.  ++.|.+++++.       ++.+.+.  +.+
T Consensus         1 p~i~vVTPTy~R~~Q~~~-LtRLa~TL~l------Vp~l~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~~   66 (223)
T cd00218           1 PTIYVVTPTYARPVQKAE-LTRLAHTLRL------VPPLHWIVVEDSEEKTPLVAELLRRS-------GLMYTHLNAKTP   66 (223)
T ss_pred             CeEEEECCCCccchhhHH-HHHHHHHHhc------CCceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeccCCC
Confidence            458899999998765544 4555544442      2389999999986  34466666554       2333322  111


Q ss_pred             -------CCHHHHHHHHHHHcC-------CCEEEEEeCCCCCChhhHHHHH
Q 023346          142 -------HGKGEAIRKGMLHSR-------GELLLMLDADGATKVTDLEKLE  178 (283)
Q Consensus       142 -------~gk~~a~n~g~~~a~-------~d~i~~~D~D~~~~~~~l~~~~  178 (283)
                             ......+|.|+++.+       .-+|.|.|+|...+-+.+++|-
T Consensus        67 ~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR  117 (223)
T cd00218          67 SDPTWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR  117 (223)
T ss_pred             CCcccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence                   113467899998764       2589999999999988888753

Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=96.16  E-value=0.066  Score=51.13  Aligned_cols=105  Identities=15%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG  139 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~~~~~~~~  139 (283)
                      -+..||||+.||.-.   +|+-++..+        +.+.-||||.|++.   |.   ..+.++++..--. ..+-++++.
T Consensus        55 ~~~aivvp~k~e~~~---~~~gvl~~i--------p~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~-~~~~~vhq~  122 (694)
T PRK14502         55 KKMAIVLPIKDEDLK---VFEGVLSGI--------PHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITH-RQAIVVHQK  122 (694)
T ss_pred             hCcEEEEEcCCCchh---HHhhHhhcC--------CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhc-CceEEEEcC
Confidence            358999999999854   477777733        23567888888765   32   2244555543221 234444332


Q ss_pred             ----------------------CCCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          140 ----------------------RNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       140 ----------------------~~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                                            -+.||+.++-.|+..|+   .+||.|+|+|..++ +...+-+..+..
T Consensus       123 dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~~yaa  190 (694)
T PRK14502        123 NPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAKHFAT  190 (694)
T ss_pred             CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHHHHHh
Confidence                                  13678888888886654   59999999999985 455555555544

>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]

Probab=96.12  E-value=0.031  Score=54.36  Aligned_cols=58  Identities=12%  Similarity=0.081  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHcCC--CEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCcc
Q 023346          144 KGEAIRKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTF  201 (283)
Q Consensus       144 k~~a~n~g~~~a~~--d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (283)
                      +-..++...+....  ++|+++|+|+.+.|+.+.+|++.|+.+|..+.++|...+..+.|
T Consensus       426 ~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~w  485 (862)
T KOG2571|consen  426 HRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGSW  485 (862)
T ss_pred             HHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCce
Confidence            33444555555544  67799999999999999999999999999988888655554444

>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.14  Score=43.79  Aligned_cols=106  Identities=13%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGRNH  142 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~~~~~  142 (283)
                      .|.|-||.|+|++..... -|..+.+.+..      -+++.-|||+||+  +..+..++++-.-.    ..++.. +...
T Consensus        86 ~~~iivVTPTY~R~~q~~-~LtRlanTL~~------V~nLhWIVVEd~~~~~p~v~~~L~rtgl~----ythl~~-~t~~  153 (330)
T KOG1476|consen   86 LPTIIVVTPTYVRPVQAA-ELTRLANTLRL------VPNLHWIVVEDGEGTTPEVSGILRRTGLP----YTHLVH-KTPM  153 (330)
T ss_pred             CccEEEEcccccchhHHH-HHHHHHHHHhh------cCCeeEEEEecCCCCCHHHHHHHHHcCCc----eEEEec-cCCC
Confidence            677999999999975443 35556555543      3389999999985  33455555543211    223333 2233


Q ss_pred             C-H----HHHHHHHHHHcC---------CCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          143 G-K----GEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       143 g-k----~~a~n~g~~~a~---------~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                      | +    -..+|.|+++.+         .-+|.|.|+|...+-+.+++ ++....
T Consensus       154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~~  207 (330)
T KOG1476|consen  154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVKK  207 (330)
T ss_pred             CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhccce
Confidence            3 3    578899998765         35888999999999888877 344433

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=96.11  E-value=0.059  Score=42.78  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH  154 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~  154 (283)
                      +....++..++.+..        .  .--+|+||-+....   .. .+.....   .+.++..+ ...|...++..|+++
T Consensus        24 ~g~~li~~~i~~l~~--------~--~~~~i~vv~~~~~~---~~-~~~~~~~---~~~~~~~~~~~~G~~~~i~~al~~   86 (186)
T cd04182          24 DGKPLLRHALDAALA--------A--GLSRVIVVLGAEAD---AV-RAALAGL---PVVVVINPDWEEGMSSSLAAGLEA   86 (186)
T ss_pred             CCeeHHHHHHHHHHh--------C--CCCcEEEECCCcHH---HH-HHHhcCC---CeEEEeCCChhhCHHHHHHHHHHh
Confidence            455666666666654        1  12367776443211   11 1111221   45555544 236889999999998


Q ss_pred             cC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          155 SR--GELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       155 a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      +.  .|+++++.+|. .++++.++++++.+.+.+.
T Consensus        87 ~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  121 (186)
T cd04182          87 LPADADAVLILLADQPLVTAETLRALIDAFREDGA  121 (186)
T ss_pred             ccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence            86  79999999999 5689999999998875443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=96.08  E-value=0.15  Score=40.95  Aligned_cols=98  Identities=10%  Similarity=0.107  Sum_probs=62.8

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH  154 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~-~~gk~~a~n~g~~~  154 (283)
                      +....+..+++.+++         . .--+++||.... +...+.+.+......  ++.++.++. ..|...++-.|+++
T Consensus        24 ~g~~ll~~~i~~~~~---------~-~~~~i~vv~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~si~~gl~~   90 (190)
T TIGR03202        24 GETTLGSASLKTALS---------S-RLSKVIVVIGEK-YAHLSWLDPYLLADE--RIMLVCCRDACEGQAHSLKCGLRK   90 (190)
T ss_pred             CCccHHHHHHHHHHh---------C-CCCcEEEEeCCc-cchhhhhhHhhhcCC--CeEEEECCChhhhHHHHHHHHHHH
Confidence            556666666666554         1 134677776543 322222222211112  466665443 35888899999987


Q ss_pred             c---CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCC
Q 023346          155 S---RGELLLMLDADGAT-KVTDLEKLESQIHAVGR  186 (283)
Q Consensus       155 a---~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~  186 (283)
                      +   ..|+++++++|.-. +++.++++++.+...+.
T Consensus        91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~  126 (190)
T TIGR03202        91 AEAMGADAVVILLADQPFLTADVINALLALAKRRPD  126 (190)
T ss_pred             hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence            6   47999999999877 89999999998876544

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PLN02458 transferase, transferring glycosyl groups

Probab=96.08  E-value=0.13  Score=44.36  Aligned_cols=103  Identities=9%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC-CcchHHHHHHHHHHcCCCcEEEEEc--CC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILL--GR  140 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~--~~  140 (283)
                      +.+.|-||.|+|.....-..-|..+...+.     .-.+++.-|||+|+. +..|.+++++.       ++.+.+.  +.
T Consensus       110 ~~rlIivVTPTY~rR~~Q~a~LTRLahTL~-----lVp~pL~WIVVEd~~~t~~va~lLrrs-------Gl~y~HL~~k~  177 (346)
T PLN02458        110 PRRLVIIVTPISTKDRYQGVLLRRLANTLR-----LVPPPLLWIVVEGQSDSEEVSEMLRKT-------GIMYRHLVFKE  177 (346)
T ss_pred             CCceEEEECCCCCCcchhHHHHHHHHHHHh-----cCCCCceEEEEeCCCCCHHHHHHHHHc-------CCceEEeccCC
Confidence            345689999999842222333555555444     234478999999875 23344554443       2333322  22


Q ss_pred             CC-----CHHHHHHHHHHHcC----CCEEEEEeCCCCCChhhHHHHH
Q 023346          141 NH-----GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLE  178 (283)
Q Consensus       141 ~~-----gk~~a~n~g~~~a~----~d~i~~~D~D~~~~~~~l~~~~  178 (283)
                      +.     .....+|.|+++.+    .-+|.|.|+|...+-+.++++-
T Consensus       178 ~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR  224 (346)
T PLN02458        178 NFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR  224 (346)
T ss_pred             CCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence            22     23466999998874    3689999999999888887753

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=96.03  E-value=0.1  Score=41.57  Aligned_cols=96  Identities=15%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHH-
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGML-  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~-~~gk~~a~n~g~~-  153 (283)
                      +....+...++.+.+         . ..-+|+||-+...   .+..+.+....   ++.++..+. ..|...++..|++ 
T Consensus        23 ~g~pll~~~i~~l~~---------~-~~~~iivv~~~~~---~~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~~l~~   86 (188)
T TIGR03310        23 KGKTILEHVVDNALR---------L-FFDEVILVLGHEA---DELVALLANHS---NITLVHNPQYAEGQSSSIKLGLEL   86 (188)
T ss_pred             CCeeHHHHHHHHHHH---------c-CCCcEEEEeCCcH---HHHHHHhccCC---CeEEEECcChhcCHHHHHHHHhcC
Confidence            456667777766665         1 1346766644322   22233332222   577776653 3588888888888 


Q ss_pred             HcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCc
Q 023346          154 HSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       154 ~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~  187 (283)
                      ....+.++++++|.. +.++.++++++.+.+.+..
T Consensus        87 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~  121 (188)
T TIGR03310        87 PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDE  121 (188)
T ss_pred             CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCc
Confidence            456799999999985 6899999999988765543

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PLN02436 cellulose synthase A

Probab=95.94  E-value=0.27  Score=49.09  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346          144 KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA  183 (283)
Q Consensus       144 k~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~~  183 (283)
                      |++|+|..++.+    .++||+-+|+|... .|..+++.+=.|-+
T Consensus       550 KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD  594 (1094)
T PLN02436        550 KAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD  594 (1094)
T ss_pred             hhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcC
Confidence            999999999864    79999999999977 78888887766653

>PLN02400 cellulose synthase

Probab=95.91  E-value=0.18  Score=50.29  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346          144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA  183 (283)
Q Consensus       144 k~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~  183 (283)
                      |++|+|..++.    +.++||+-+|+|... .|..+++.+=.|-+
T Consensus       541 KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD  585 (1085)
T PLN02400        541 KAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD  585 (1085)
T ss_pred             hhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence            99999999985    479999999999999 78888877766543

>PLN02189 cellulose synthase

Probab=95.88  E-value=0.084  Score=52.37  Aligned_cols=52  Identities=13%  Similarity=0.156  Sum_probs=44.2

Q ss_pred             cEEEEEcCCCCC-----HHHHHHHHHHH----cCCCEEEEEeCCCCCC-hhhHHHHHHHHHH
Q 023346          132 NVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA  183 (283)
Q Consensus       132 ~~~~~~~~~~~g-----k~~a~n~g~~~----a~~d~i~~~D~D~~~~-~~~l~~~~~~~~~  183 (283)
                      ++.++.++++.|     |++|+|..++.    +.++||+.+|+|..+. |..+++.+=.|-+
T Consensus       499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD  560 (1040)
T PLN02189        499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD  560 (1040)
T ss_pred             eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence            688888887655     99999999954    5799999999999995 6999988887764

>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]

Probab=95.61  E-value=0.12  Score=44.80  Aligned_cols=78  Identities=19%  Similarity=0.377  Sum_probs=57.6

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      .-+|.||||-+|+++.|...|..+..-+..|     ...+.|+||....+                         +..++
T Consensus       150 r~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQ-----rL~y~iyVieQ~g~-------------------------~~FNR  199 (372)
T KOG3916|consen  150 RHKVAIIIPFRNREEHLRYLLHHLHPFLQRQ-----RLDYRIYVIEQAGN-------------------------KPFNR  199 (372)
T ss_pred             cceeEEEeecccHHHHHHHHHHHhhHHHHhh-----hhceeEEEEEecCC-------------------------CcccH
Confidence            4479999999999999999999988876654     33567777754211                         23567


Q ss_pred             HHHHHHHHHHc----CCCEEEEEeCCCCCChh
Q 023346          145 GEAIRKGMLHS----RGELLLMLDADGATKVT  172 (283)
Q Consensus       145 ~~a~n~g~~~a----~~d~i~~~D~D~~~~~~  172 (283)
                      +.-+|.|+..|    .-|-++|-|-|-.+..|
T Consensus       200 akL~NVGf~eAlkd~~wdCfIFHDVDllPenD  231 (372)
T KOG3916|consen  200 AKLLNVGFLEALKDYGWDCFIFHDVDLLPEND  231 (372)
T ss_pred             HHhhhhHHHHHHHhcCCCEEEEecccccccCC
Confidence            77888888766    35789999999887543

>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function

Probab=95.60  E-value=0.076  Score=45.53  Aligned_cols=109  Identities=20%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             EEEEE-eecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-------
Q 023346           68 ISLII-PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-------  139 (283)
Q Consensus        68 vsvii-p~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-------  139 (283)
                      ++|++ |.|..+.... .+...++....      ..--.+++-+.++++.+.++++.+.+..   .++++.-+       
T Consensus         3 ~~vCv~pl~~~~~~~~-~l~e~ie~~~~------~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g---~v~~~~w~~~~~~~~   72 (285)
T PF01697_consen    3 FVVCVSPLFGNEDDWL-QLIEWIEYHRL------LGVDHFYFYDNSSSPSVRKVLKEYERSG---YVEVIPWPLRPKFPD   72 (285)
T ss_pred             EEEEccchhcccccHH-HHHHHHHHHHH------hCCCEEEEEEccCCHHHHHhHHHHhhcC---eEEEEEcccccccCC
Confidence            67777 6666443322 23333332221      2345788888889999999999887662   57766654       


Q ss_pred             ------------CCCCHHHHHHHHHHHcC--CCEEEEEeCCCCCChhh----HHHHHHHHHHcCC
Q 023346          140 ------------RNHGKGEAIRKGMLHSR--GELLLMLDADGATKVTD----LEKLESQIHAVGR  186 (283)
Q Consensus       140 ------------~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~~~~~~----l~~~~~~~~~~~~  186 (283)
                                  ...|...|.|.++...+  .+|++|+|-|..+-|..    .+.+...+++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~  137 (285)
T PF01697_consen   73 FPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPN  137 (285)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhccc
Confidence                        01345788888887764  68999999999996665    6777777776655

The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.

>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum

Probab=95.55  E-value=0.38  Score=41.64  Aligned_cols=117  Identities=17%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             CCceEEEEEeecCC--CCChHHHHHHHHHHHHHhhhcCCCCceEEEE-EeCCCCcchHHHHHHHHHHcC----CCcEEEE
Q 023346           64 AEKYISLIIPAFNE--EHRLPGALDETLNYLQQRAAKDKSFTYEVLI-IDDGSSDGTKRVAFDFVRKYT----VDNVRII  136 (283)
Q Consensus        64 ~~p~vsviip~~ne--~~~l~~~l~s~~~~~~~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~----~~~~~~~  136 (283)
                      ..++++|=||+-.+  +.+|.++|.|++..+....    ....-|+| +.|...+....+.+++...++    ...+.|+
T Consensus        50 ~~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~E----r~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI  125 (297)
T PF04666_consen   50 TGKKLCIGIPTVKREKESYLLDTLASLLDGLSPEE----RKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI  125 (297)
T ss_pred             CCCeEEEEecccccCCCchHHHHHHHHHHhCCHHH----hcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence            34459999998554  6789999999999766532    22333333 333323333444444443322    1245555


Q ss_pred             EcCCC-----------CC---------------HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          137 LLGRN-----------HG---------------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       137 ~~~~~-----------~g---------------k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      ..+..           .|               .+..++.+  +.+|+|++.+.+|....|+|+.++.+.+.....
T Consensus       126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~  199 (297)
T PF04666_consen  126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWES  199 (297)
T ss_pred             ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence            44321           11               22233332  236899999999999999999999999987654

N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=95.34  E-value=0.19  Score=40.99  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=61.1

Q ss_pred             eecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Q 023346           73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGM  152 (283)
Q Consensus        73 p~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~  152 (283)
                      |..+ .+.+...++++.+          ..--+|+|+-+...+...+.+.+... +. ..+.++..+...|.+.++..++
T Consensus        25 ~v~g-~pli~~~l~~l~~----------~g~~~i~vv~~~~~~~i~~~~~~~~~-~~-~~i~~~~~~~~~g~~~al~~~~   91 (217)
T cd04181          25 PIAG-KPILEYIIERLAR----------AGIDEIILVVGYLGEQIEEYFGDGSK-FG-VNIEYVVQEEPLGTAGAVRNAE   91 (217)
T ss_pred             EECC-eeHHHHHHHHHHH----------CCCCEEEEEeccCHHHHHHHHcChhh-cC-ceEEEEeCCCCCccHHHHHHhh
Confidence            3344 4677777777665          11346777665433333333322110 11 2466666665688899999999


Q ss_pred             HHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          153 LHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       153 ~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +....+.++++++|.....+ +.++++.+.+..
T Consensus        92 ~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~  123 (217)
T cd04181          92 DFLGDDDFLVVNGDVLTDLD-LSELLRFHREKG  123 (217)
T ss_pred             hhcCCCCEEEEECCeecCcC-HHHHHHHHHhcC
Confidence            88877899999999988766 555656555443

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=95.15  E-value=0.35  Score=38.91  Aligned_cols=55  Identities=16%  Similarity=0.132  Sum_probs=42.3

Q ss_pred             cEEEEEcCC--CCCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          132 NVRIILLGR--NHGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       132 ~~~~~~~~~--~~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      .++++....  ..|...++..|++....++++++++|. .++++.++++++.+.+.+.
T Consensus        62 ~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  119 (193)
T PRK00317         62 GLPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA  119 (193)
T ss_pred             CCcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence            345555432  367778889999988889999999999 5599999999998765433

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=94.84  E-value=0.57  Score=37.77  Aligned_cols=95  Identities=9%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             ecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHH
Q 023346           74 AFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGM  152 (283)
Q Consensus        74 ~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~-~~gk~~a~n~g~  152 (283)
                      -++....+..+++..++          ..--++|||--.-   ..+..+.....   .+++++.++. ..|.+.++..|+
T Consensus        27 p~~g~plv~~~~~~a~~----------a~~~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~   90 (199)
T COG2068          27 PLDGKPLVRASAETALS----------AGLDRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGL   90 (199)
T ss_pred             ccCCCcHHHHHHHHHHh----------cCCCeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHH
Confidence            34555666777776665          2234788886654   33333333322   2689999875 589999999999


Q ss_pred             HHcCCC--EEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346          153 LHSRGE--LLLMLDADGA-TKVTDLEKLESQIHAV  184 (283)
Q Consensus       153 ~~a~~d--~i~~~D~D~~-~~~~~l~~~~~~~~~~  184 (283)
                      +++.++  .++++-+|.- +.++.+.++++.+...
T Consensus        91 ~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~  125 (199)
T COG2068          91 RAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR  125 (199)
T ss_pred             HhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence            998765  9999999988 7999999999999776

>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans

Probab=94.76  E-value=0.033  Score=46.96  Aligned_cols=110  Identities=12%  Similarity=0.066  Sum_probs=66.2

Q ss_pred             EEEEEee-cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346           68 ISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE  146 (283)
Q Consensus        68 vsviip~-~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~  146 (283)
                      .||+|.+ |++.+.|.+.|+++.+         ...--||+||=++.......  .......  ..++++..+.|  .-.
T Consensus         1 fTvvi~t~~~R~~~L~~~l~~l~~---------~~~l~~IvVvWn~~~~~P~~--~~~~~~~--vpV~~~~~~~n--sLn   65 (247)
T PF09258_consen    1 FTVVINTSYKRSDLLKRLLRHLAS---------SPSLRKIVVVWNNPNPPPPS--SKWPSTG--VPVRVVRSSRN--SLN   65 (247)
T ss_dssp             EEEEEEE-SS-HHHHHHHHHHHTT---------STTEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSH--HGG
T ss_pred             CEEEEEecccchHHHHHHHHHHHc---------CCCCCeEEEEeCCCCCCCcc--cccCCCC--ceEEEEecCCc--cHH
Confidence            4889999 8888877777777743         33356788876653222211  1221111  36888876532  222


Q ss_pred             HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       147 a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      ++-.-....+++-|+.+|+|..++++.|+...+.-++.|+..+++.
T Consensus        66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~  111 (247)
T PF09258_consen   66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP  111 (247)
T ss_dssp             GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred             hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence            3333445678999999999999999999999999998888755443

They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.

>PLN03180 reversibly glycosylated polypeptide; Provisional

Probab=94.54  E-value=0.036  Score=47.90  Aligned_cols=88  Identities=16%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-----
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-----  139 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-----  139 (283)
                      ...+.||||+-.+.    .+|++....         -.++++|+|-|+..-.+..+-+-+       ...+...+     
T Consensus        10 ~~evdIVi~TI~~~----~fL~~~r~~---------l~~~h~iiV~d~D~~~~~~~~~G~-------d~~vy~r~d~~~~   69 (346)
T PLN03180         10 KDELDIVIPTIRNL----DFLEMWRPF---------FQPYHLIIVQDGDPSKEIKVPEGF-------DYELYNRNDINRI   69 (346)
T ss_pred             CCcceEEEeccCch----hHHHHHHHh---------cCcccEEEEecCCcccceeccCCC-------ceeecCHHHHHhh
Confidence            34589999996553    455555542         226778888774332221111100       11111110     


Q ss_pred             -------CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh
Q 023346          140 -------RNHGKGEAIRKGMLHSRGELLLMLDADGATKVT  172 (283)
Q Consensus       140 -------~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~  172 (283)
                             -+....+.+|.|+-.++.+|++++|+|+.+..+
T Consensus        70 Lg~~~~~Ip~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d  109 (346)
T PLN03180         70 LGPKASCISFKDSACRCFGYLVSKKKYIFTIDDDCFVAKD  109 (346)
T ss_pred             hcccccccccCcccchhhhheeecceEEEEECCCCCCCCC
Confidence                   012344667889888999999999999999877

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=94.51  E-value=0.26  Score=39.08  Aligned_cols=84  Identities=18%  Similarity=0.136  Sum_probs=58.9

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH  154 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~  154 (283)
                      +....+..+++.+.+.           --+|+||-+.....    ..    ..   +++++..+ ...|...++..|+++
T Consensus        24 ~g~~ll~~~i~~l~~~-----------~~~iivv~~~~~~~----~~----~~---~~~~v~~~~~~~G~~~si~~~l~~   81 (181)
T cd02503          24 GGKPLLEHVLERLKPL-----------VDEVVISANRDQER----YA----LL---GVPVIPDEPPGKGPLAGILAALRA   81 (181)
T ss_pred             CCEEHHHHHHHHHHhh-----------cCEEEEECCCChHH----Hh----hc---CCcEeeCCCCCCCCHHHHHHHHHh
Confidence            4566666666666541           23677775432211    11    11   46667654 357888999999999


Q ss_pred             cCCCEEEEEeCCCC-CChhhHHHHHHHH
Q 023346          155 SRGELLLMLDADGA-TKVTDLEKLESQI  181 (283)
Q Consensus       155 a~~d~i~~~D~D~~-~~~~~l~~~~~~~  181 (283)
                      ...+.++++.+|.. +.++.++++++.+
T Consensus        82 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          82 APADWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             cCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            88999999999996 5999999999887

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=94.50  E-value=0.75  Score=38.15  Aligned_cols=97  Identities=10%  Similarity=0.117  Sum_probs=57.9

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +....+..+++.+.+         ...--+|+|+-+.... . +.+.++....   +++++.++...+.+ ....+++..
T Consensus        22 ~Gkpli~~~i~~l~~---------~~~~~~ivVv~~~~~~-~-~~i~~~~~~~---~v~~v~~~~~~~l~-~~~~~~~~~   86 (233)
T cd02518          22 GGKPLLEHLLDRLKR---------SKLIDEIVIATSTNEE-D-DPLEALAKKL---GVKVFRGSEEDVLG-RYYQAAEEY   86 (233)
T ss_pred             CCccHHHHHHHHHHh---------CCCCCeEEEECCCCcc-c-HHHHHHHHHc---CCeEEECCchhHHH-HHHHHHHHc
Confidence            455666777766654         1112367776554431 1 1222222222   46777776433222 233345555


Q ss_pred             CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346          156 RGELLLMLDADGAT-KVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       156 ~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~  187 (283)
                      ..++++++++|.-+ +++.++++++.+...+..
T Consensus        87 ~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~  119 (233)
T cd02518          87 NADVVVRITGDCPLIDPEIIDAVIRLFLKSGAD  119 (233)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence            68999999999886 899999999988765443

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PLN02917 CMP-KDO synthetase

Probab=94.42  E-value=1.1  Score=38.82  Aligned_cols=53  Identities=8%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             cEEEEEc--CCCCCHHHHHHHHHHHcC--CCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346          132 NVRIILL--GRNHGKGEAIRKGMLHSR--GELLLMLDADGAT-KVTDLEKLESQIHAVG  185 (283)
Q Consensus       132 ~~~~~~~--~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~  185 (283)
                      ++.++.+  ....|.+.+ ..|++...  .|+++++++|..+ +++.++++++.+.+++
T Consensus       108 ~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~  165 (293)
T PLN02917        108 GADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP  165 (293)
T ss_pred             CCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcC
Confidence            3555543  234565555 46776653  6899999999885 9999999999886654

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=94.24  E-value=0.52  Score=38.51  Aligned_cols=93  Identities=16%  Similarity=0.112  Sum_probs=57.5

Q ss_pred             CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc-CCCcEEEEEcCCCCCHHHHHHHHHHHcC
Q 023346           78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY-TVDNVRIILLGRNHGKGEAIRKGMLHSR  156 (283)
Q Consensus        78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~gk~~a~n~g~~~a~  156 (283)
                      .+.|...++.+.+          ..--+|+|+-+...+...+.+.   ... ....+.+.......|.+.++-.|+++..
T Consensus        29 ~pli~~~l~~l~~----------~g~~~v~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~   95 (223)
T cd06915          29 RPFLEYLLEYLAR----------QGISRIVLSVGYLAEQIEEYFG---DGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP   95 (223)
T ss_pred             cchHHHHHHHHHH----------CCCCEEEEEcccCHHHHHHHHc---CccccCceEEEEECCCCCcchHHHHHHHhhcC
Confidence            4667777766665          1123677765543333333332   111 1113444454556888899999998887


Q ss_pred             CCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          157 GELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       157 ~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      .+.++++++|..+++ .+.++++.+.+.
T Consensus        96 ~~~~lv~~~D~~~~~-~~~~~l~~~~~~  122 (223)
T cd06915          96 EDQFLVLNGDTYFDV-DLLALLAALRAS  122 (223)
T ss_pred             CCCEEEEECCcccCC-CHHHHHHHHHhC
Confidence            788999999997754 477787777553

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]

Probab=94.13  E-value=0.62  Score=40.69  Aligned_cols=114  Identities=11%  Similarity=0.152  Sum_probs=80.9

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC--------CcEE
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--------DNVR  134 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--------~~~~  134 (283)
                      ..+|.+.||+-++|.+..++++++++++.-      -....+-|||.-||....+...++.+......        ..+.
T Consensus        64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr------PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~  137 (411)
T KOG1413|consen   64 NWPPVIPVVVFACSRADALRRHVKKLLEYR------PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEIS  137 (411)
T ss_pred             CCCCceeEEEEecCcHHHHHHHHHHHHHhC------cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccc
Confidence            345668899999999999999999999832      12346778888899888888888777554320        1122


Q ss_pred             EEEcCCC-CC-------HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          135 IILLGRN-HG-------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       135 ~~~~~~~-~g-------k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                      |...... .+       ...|+|..+...+.+.++++.+|.-+.|++.+...+...
T Consensus       138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~  193 (411)
T KOG1413|consen  138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTII  193 (411)
T ss_pred             cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHH
Confidence            2222211 11       345777777777899999999999999999887766543

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=93.63  E-value=0.55  Score=43.09  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=61.6

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+ .+.+..+++++.+          ....+++|+.....+.    +++...++   ++.++..++..|.+.++..
T Consensus        22 l~~i~g-kpli~~~l~~l~~----------~g~~~iiiv~~~~~~~----i~~~~~~~---~i~~~~~~~~~G~~~ai~~   83 (451)
T TIGR01173        22 LHPLAG-KPMLEHVIDAARA----------LGPQKIHVVYGHGAEQ----VRKALANR---DVNWVLQAEQLGTGHAVLQ   83 (451)
T ss_pred             hceeCC-ccHHHHHHHHHHh----------CCCCeEEEEECCCHHH----HHHHhcCC---CcEEEEcCCCCchHHHHHH
Confidence            344444 4666666666654          1123666664432222    23332222   4666666656788888888


Q ss_pred             HHHHcC-CCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346          151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHAV  184 (283)
Q Consensus       151 g~~~a~-~d~i~~~D~D~-~~~~~~l~~~~~~~~~~  184 (283)
                      ++.... .+.++++++|. .+.++.++++++.+.+.
T Consensus        84 a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~  119 (451)
T TIGR01173        84 ALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN  119 (451)
T ss_pred             HHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence            888864 47899999998 57899999999887654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=93.38  E-value=0.66  Score=38.47  Aligned_cols=102  Identities=11%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE--cCCCCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL--LGRNHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~--~~~~~gk~~a~  148 (283)
                      ++|..+. +.|...++++.+        .  .--+|+|+-....+...+.+.++...   ..+.++.  .....|.+.++
T Consensus        25 llpv~g~-pli~~~l~~l~~--------~--g~~~v~iv~~~~~~~~~~~l~~~~~~---~~~~i~~~~~~~~~G~~~al   90 (233)
T cd06425          25 LVEFCNK-PMIEHQIEALAK--------A--GVKEIILAVNYRPEDMVPFLKEYEKK---LGIKITFSIETEPLGTAGPL   90 (233)
T ss_pred             cCeECCc-chHHHHHHHHHH--------C--CCcEEEEEeeeCHHHHHHHHhccccc---CCeEEEeccCCCCCccHHHH
Confidence            3455454 677777777665        1  12356666554444444444433111   1344443  34457888888


Q ss_pred             HHHHHHcCC--CEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          149 RKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       149 n~g~~~a~~--d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      ..|....+.  +-++++.+|...+.+ +.++++.+.+.+..
T Consensus        91 ~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~  130 (233)
T cd06425          91 ALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKHGAE  130 (233)
T ss_pred             HHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCC
Confidence            888887653  446777999887665 58888877665443

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=93.37  E-value=0.21  Score=41.79  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=67.1

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~~~~~~~~~~~gk~~a~  148 (283)
                      ++|..|..+.|...|+.+.+          ..--++|+|-.+..   .+.+.++......  ..++++..+...|.+.|+
T Consensus        24 ll~i~g~~pli~~~l~~l~~----------~g~~~ii~V~~~~~---~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al   90 (248)
T PF00483_consen   24 LLPIGGKYPLIDYVLENLAN----------AGIKEIIVVVNGYK---EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGAL   90 (248)
T ss_dssp             GSEETTEEEHHHHHHHHHHH----------TTCSEEEEEEETTT---HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHH
T ss_pred             cceecCCCcchhhhhhhhcc----------cCCceEEEEEeecc---cccccccccccccccccceeeecccccchhHHH
Confidence            34555665666666666665          33456444433221   2223333333221  247888888788999999


Q ss_pred             HHHHHHcCCCE----EEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          149 RKGMLHSRGEL----LLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       149 n~g~~~a~~d~----i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      -.+......+-    ++++.+|...+. .+..+++.+.+.+..
T Consensus        91 ~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~  132 (248)
T PF00483_consen   91 LQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNAD  132 (248)
T ss_dssp             HHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhccccc
Confidence            99999988765    999999998888 777888877776653

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=93.29  E-value=0.89  Score=37.31  Aligned_cols=97  Identities=14%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIR  149 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n  149 (283)
                      ++|..+. ..|...|+++.+          ..--+|+|+-....+...+.+.+   +.....+.+.... +..|.+.++.
T Consensus        24 llpi~g~-~li~~~l~~l~~----------~gi~~i~iv~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~g~~~~l~   89 (221)
T cd06422          24 LVPVAGK-PLIDHALDRLAA----------AGIRRIVVNTHHLADQIEAHLGD---SRFGLRITISDEPDELLETGGGIK   89 (221)
T ss_pred             eeeECCE-EHHHHHHHHHHH----------CCCCEEEEEccCCHHHHHHHHhc---ccCCceEEEecCCCcccccHHHHH
Confidence            4455454 777777777665          22346666654433333333322   1111134444433 3568888999


Q ss_pred             HHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       150 ~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                      .++.....+.++++.+|.....+..+ +++...
T Consensus        90 ~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~  121 (221)
T cd06422          90 KALPLLGDEPFLVVNGDILWDGDLAP-LLLLHA  121 (221)
T ss_pred             HHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHHH
Confidence            99988766889999999988876554 555443

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=93.27  E-value=0.32  Score=40.15  Aligned_cols=90  Identities=14%  Similarity=0.245  Sum_probs=66.4

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~~gk~~a~n~g~~  153 (283)
                      ...+.|.++|+++.+          ..--|++||-+|--   .+.++.+..+++ ...+++.++.  ..+-+.++-.|..
T Consensus        29 ~gr~ii~~~i~~L~~----------~gi~e~vvV~~g~~---~~lve~~l~~~~-~~~~iv~N~~y~ktN~~~Sl~~akd   94 (239)
T COG1213          29 GGREIIYRTIENLAK----------AGITEFVVVTNGYR---ADLVEEFLKKYP-FNAKIVINSDYEKTNTGYSLLLAKD   94 (239)
T ss_pred             CCeEeHHHHHHHHHH----------cCCceEEEEeccch---HHHHHHHHhcCC-cceEEEeCCCcccCCceeEEeeehh
Confidence            355678888888887          44668999986643   344555555555 3678888763  2344677788888


Q ss_pred             HcCCCEEEEEeCCCCCChhhHHHHHHH
Q 023346          154 HSRGELLLMLDADGATKVTDLEKLESQ  180 (283)
Q Consensus       154 ~a~~d~i~~~D~D~~~~~~~l~~~~~~  180 (283)
                      +.+++ ++++++|...+|..+++++++
T Consensus        95 ~~~~~-fii~~sD~vye~~~~e~l~~a  120 (239)
T COG1213          95 YMDGR-FILVMSDHVYEPSILERLLEA  120 (239)
T ss_pred             hhcCc-EEEEeCCEeecHHHHHHHHhC
Confidence            88888 777999999999999999885

>PLN02248 cellulose synthase-like protein

Probab=93.13  E-value=0.15  Score=50.90  Aligned_cols=40  Identities=20%  Similarity=0.180  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHH----cCCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346          144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA  183 (283)
Q Consensus       144 k~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~  183 (283)
                      |++|+|..++.    +.++||+.+|+|..+ ++..+++.+=.|-+
T Consensus       603 KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD  647 (1135)
T PLN02248        603 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD  647 (1135)
T ss_pred             ccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence            99999988874    579999999999998 55688888877765

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=93.00  E-value=0.69  Score=37.54  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=44.4

Q ss_pred             cEEEEEcCC-CCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346          132 NVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAV  184 (283)
Q Consensus       132 ~~~~~~~~~-~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~  184 (283)
                      +++++..+. ..|...++-.|+++...++++++++|..+ +++.++++++.++..
T Consensus        67 ~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  121 (200)
T PRK02726         67 GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLENV  121 (200)
T ss_pred             CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence            467776553 37899999999999988999999999876 899999999987653

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.94  E-value=0.94  Score=41.61  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+ ...|...|+++.+          ....+++|+-....+.    ++++..+..  +++++..+...|.+.++..
T Consensus        23 ll~v~g-kpli~~~l~~l~~----------~g~~~iivvv~~~~~~----i~~~~~~~~--~i~~v~~~~~~G~~~sv~~   85 (450)
T PRK14360         23 LHPLGG-KSLVERVLDSCEE----------LKPDRRLVIVGHQAEE----VEQSLAHLP--GLEFVEQQPQLGTGHAVQQ   85 (450)
T ss_pred             cCEECC-hhHHHHHHHHHHh----------CCCCeEEEEECCCHHH----HHHHhcccC--CeEEEEeCCcCCcHHHHHH
Confidence            344434 4666667776665          2223566555432222    233322222  5777776656777788877


Q ss_pred             HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcCCc
Q 023346          151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~~  187 (283)
                      +++...  .+.++++++|. .+.+..++++++.+.+.+..
T Consensus        86 ~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~  125 (450)
T PRK14360         86 LLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNAD  125 (450)
T ss_pred             HHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCc
Confidence            777653  45678899998 56899999999988765443

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=92.87  E-value=2.1  Score=36.35  Aligned_cols=102  Identities=13%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ++|+|+. +.|.-+|+.+..          ..--+|+||-.   ++.....+++...   +. .++++..+++..|.+.|
T Consensus        25 LlpV~~K-Pmi~y~l~~L~~----------aGI~dI~II~~---~~~~~~~~~llGdgs~~g-v~itY~~Q~~p~GlA~A   89 (286)
T COG1209          25 LLPVYDK-PMIYYPLETLML----------AGIRDILIVVG---PEDKPTFKELLGDGSDFG-VDITYAVQPEPDGLAHA   89 (286)
T ss_pred             cceecCc-chhHhHHHHHHH----------cCCceEEEEec---CCchhhhhhhhcCccccC-cceEEEecCCCCcHHHH
Confidence            5788874 455666777665          33457777743   3333333333222   22 47999999999999999


Q ss_pred             HHHHHHHcC-CCEEEEEeCCCCCChhhHHHHHHHHHHcCCccc
Q 023346          148 IRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAVGRKEY  189 (283)
Q Consensus       148 ~n~g~~~a~-~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~  189 (283)
                      .-.|-.... .++++++ +|..+.. -+++.++.+.+....+.
T Consensus        90 v~~a~~fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~  130 (286)
T COG1209          90 VLIAEDFVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGAT  130 (286)
T ss_pred             HHHHHhhcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcE
Confidence            999999988 5555555 5555555 88888888876444433

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.86  E-value=1.2  Score=41.04  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+. +.+...|+++.+          ..--+++++-....+   ++.+.+ .+..  .+.++..+...|.+.++..
T Consensus        25 l~pi~g~-pli~~~l~~l~~----------~gi~~iiiv~~~~~~---~i~~~~-~~~~--~i~~~~~~~~~Gt~~al~~   87 (459)
T PRK14355         25 MHPLAGR-PMVSWPVAAARE----------AGAGRIVLVVGHQAE---KVREHF-AGDG--DVSFALQEEQLGTGHAVAC   87 (459)
T ss_pred             eceeCCc-cHHHHHHHHHHh----------cCCCeEEEEECCCHH---HHHHHh-ccCC--ceEEEecCCCCCHHHHHHH
Confidence            4555554 666666666654          223466666543222   222222 2222  5667666667888899988


Q ss_pred             HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346          151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~  185 (283)
                      +++...  .|.++++++|. .+.+..++++++.+....
T Consensus        88 a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~  125 (459)
T PRK14355         88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATG  125 (459)
T ss_pred             HHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcC
Confidence            888764  47899999998 678999999999886643

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=92.77  E-value=1.9  Score=35.67  Aligned_cols=100  Identities=13%  Similarity=0.096  Sum_probs=58.2

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+. ..+...++++.+        .  .--+|+|+-....+...+.+.+.. .++ ..+.++..+...|.+.++..
T Consensus        25 l~~i~g~-~li~~~l~~l~~--------~--~~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~g~~~sl~~   91 (236)
T cd04189          25 LIPVAGK-PIIQYAIEDLRE--------A--GIEDIGIVVGPTGEEIKEALGDGS-RFG-VRITYILQEEPLGLAHAVLA   91 (236)
T ss_pred             eeEECCc-chHHHHHHHHHH--------C--CCCEEEEEcCCCHHHHHHHhcchh-hcC-CeEEEEECCCCCChHHHHHH
Confidence            4454444 777777777665        1  233677766543333333333211 111 24566666556788899988


Q ss_pred             HHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       151 g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      |......+-++++.+|.....+ +.++++.+...
T Consensus        92 a~~~i~~~~~li~~~D~~~~~~-~~~~~~~~~~~  124 (236)
T cd04189          92 ARDFLGDEPFVVYLGDNLIQEG-ISPLVRDFLEE  124 (236)
T ss_pred             HHHhcCCCCEEEEECCeecCcC-HHHHHHHHHhc
Confidence            8887753334558899988766 44566655443

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ]

Probab=92.75  E-value=2.2  Score=37.80  Aligned_cols=112  Identities=14%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             EEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH--H----------------HHHHHHHH--
Q 023346           68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK--R----------------VAFDFVRK--  127 (283)
Q Consensus        68 vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~~--  127 (283)
                      |=|.|+.|...+ ...+|.+++++..      ...++-|=|++....++..  .                ....+...  
T Consensus         2 IFvsiasyRD~~-c~~Tl~~~~~~A~------~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~   74 (343)
T PF11397_consen    2 IFVSIASYRDPE-CAPTLKDLFARAT------NPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSA   74 (343)
T ss_pred             EEEEEeeecCch-HHHHHHHHHHhcC------CCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccc
Confidence            567889998864 7788888887322      3456777777654332222  0                01111111  


Q ss_pred             ----------cCCCcEEEEEcC--CCCCHHHHHHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          128 ----------YTVDNVRIILLG--RNHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       128 ----------~~~~~~~~~~~~--~~~gk~~a~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                                ....+|++++.+  ...|...|++.+.+.-+| +|++.+|+.+++.++|=+.+++.+...+.
T Consensus        75 ~~~~~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~  146 (343)
T PF11397_consen   75 CAEWPDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRN  146 (343)
T ss_pred             ccccccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCC
Confidence                      111367777765  358999999999988775 79999999999999999999999987643

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=92.63  E-value=3  Score=34.33  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +..+.+..+++.+..         ...--+|+|+-+...  ..++.+.+.....  ++.++...  .+...++-.|++..
T Consensus        29 ~g~pli~~~l~~l~~---------~~~~~~ivvv~~~~~--~~~~~~~~~~~~~--~~~~~~~~--~~~~~sv~~~l~~~   93 (227)
T PRK00155         29 GGKPILEHTLEAFLA---------HPRIDEIIVVVPPDD--RPDFAELLLAKDP--KVTVVAGG--AERQDSVLNGLQAL   93 (227)
T ss_pred             CCEEHHHHHHHHHHc---------CCCCCEEEEEeChHH--HHHHHHHhhccCC--ceEEeCCc--chHHHHHHHHHHhC
Confidence            445555566665553         111336777755222  1222222221111  34444332  35788888888876


Q ss_pred             -CCCEEEEEeCCCC-CChhhHHHHHHHHHHcC
Q 023346          156 -RGELLLMLDADGA-TKVTDLEKLESQIHAVG  185 (283)
Q Consensus       156 -~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~  185 (283)
                       ..++++++|+|.. ++++.++++++.+..++
T Consensus        94 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~  125 (227)
T PRK00155         94 PDDDWVLVHDAARPFLTPDDIDRLIEAAEETG  125 (227)
T ss_pred             CCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence             5789999999977 48999999999887653

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=92.62  E-value=1.6  Score=37.83  Aligned_cols=99  Identities=16%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHH---HcCCCcEEEEEcCCCCCHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR---KYTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ++|+++. +.|.-.|+++..          ..--+|+||-....   .+.++++..   .+. .++.++..++..|.+.|
T Consensus        28 Llpv~gk-PmI~~~l~~l~~----------aGi~~I~ii~~~~~---~~~~~~~l~~g~~~g-~~i~y~~q~~~~Gta~A   92 (292)
T PRK15480         28 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWG-LNLQYKVQPSPDGLAQA   92 (292)
T ss_pred             EeEECCE-EHHHHHHHHHHH----------CCCCEEEEEecCCc---hHHHHHHHcCccccC-ceeEEEECCCCCCHHHH
Confidence            6788887 777777777765          22457776654221   122233322   121 35777877778899999


Q ss_pred             HHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          148 IRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       148 ~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +-.|...... +++++ -+|+.+....+.++++.+.+..
T Consensus        93 l~~a~~~i~~~~~~lv-~gD~i~~~~~l~~ll~~~~~~~  130 (292)
T PRK15480         93 FIIGEEFIGGDDCALV-LGDNIFYGHDLPKLMEAAVNKE  130 (292)
T ss_pred             HHHHHHHhCCCCEEEE-ECCeeeeccCHHHHHHHHHhCC
Confidence            9998888754 55554 5777765566888888765543

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=92.53  E-value=0.93  Score=37.41  Aligned_cols=90  Identities=13%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~--~~gk~~a~  148 (283)
                      ++|.-+ ...|...|+++.+          ..--+|+||-....    +.+.++.....  ++.++.++.  ..|.+.++
T Consensus        23 l~~~~g-~~li~~~l~~l~~----------~gi~~i~vv~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~g~~~s~   85 (229)
T cd02523          23 LLEING-KPLLERQIETLKE----------AGIDDIVIVTGYKK----EQIEELLKKYP--NIKFVYNPDYAETNNIYSL   85 (229)
T ss_pred             eeeECC-EEHHHHHHHHHHH----------CCCceEEEEeccCH----HHHHHHHhccC--CeEEEeCcchhhhCcHHHH
Confidence            344434 4667777777665          12346777655322    22333333222  577777653  47888899


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHH
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLE  178 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~  178 (283)
                      ..|.... .+.++++.+|....++.++.+.
T Consensus        86 ~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~  114 (229)
T cd02523          86 YLARDFL-DEDFLLLEGDVVFDPSILERLL  114 (229)
T ss_pred             HHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence            9998887 6788999999999887666554

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=92.52  E-value=1.9  Score=37.22  Aligned_cols=99  Identities=16%  Similarity=0.114  Sum_probs=60.7

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~gk~~a~  148 (283)
                      ++|+++. +.|.-.|+.+..          ..--+|+||-....   .+.++++.....  ..++.++..++..|.+.|+
T Consensus        24 Llpv~gk-PmI~~~L~~l~~----------aGi~~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al   89 (286)
T TIGR01207        24 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAF   89 (286)
T ss_pred             eeEECCE-EhHHHHHHHHHH----------CCCCEEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCCCHHHHH
Confidence            6778886 777777777765          22346766543211   122223222111  1246667666678999999


Q ss_pred             HHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          149 RKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       149 n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      -.|...... +++++ -+|+.+....+.++++...+.
T Consensus        90 ~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~~~  125 (286)
T TIGR01207        90 IIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAAAR  125 (286)
T ss_pred             HHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHHhc
Confidence            999988754 45554 588777667788888766544

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=92.41  E-value=0.88  Score=37.73  Aligned_cols=96  Identities=14%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCCHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEAIRKGML  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~gk~~a~n~g~~  153 (283)
                      +....|..+++++..         ...--+|+||-+.   +....++++..++.  ..++.++..  ..+...+.-.|++
T Consensus        28 ~gkpll~~~i~~~~~---------~~~~~~ivVv~~~---~~~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~   93 (230)
T PRK13385         28 VGEPIFIHALRPFLA---------DNRCSKIIIVTQA---QERKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLD   93 (230)
T ss_pred             CCeEHHHHHHHHHHc---------CCCCCEEEEEeCh---hhHHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHH
Confidence            556667777777654         1223466666542   22222223223322  113455542  2345688888887


Q ss_pred             Hc-CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346          154 HS-RGELLLMLDADGAT-KVTDLEKLESQIHAVG  185 (283)
Q Consensus       154 ~a-~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~  185 (283)
                      .. ..++++++|+|..+ +++.++++++.+...+
T Consensus        94 ~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~  127 (230)
T PRK13385         94 RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG  127 (230)
T ss_pred             hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence            75 35789999999877 8999999999987654

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=92.35  E-value=1  Score=36.77  Aligned_cols=96  Identities=15%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +....+..+++++..         ...--+|+||-+...   .+....+........+.++..+  .|...++..|+++.
T Consensus        26 ~Gkpll~~~i~~l~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~~   91 (218)
T cd02516          26 GGKPVLEHTLEAFLA---------HPAIDEIVVVVPPDD---IDLAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKAL   91 (218)
T ss_pred             CCeEHHHHHHHHHhc---------CCCCCEEEEEeChhH---HHHHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHhc
Confidence            455666666666654         111236777654322   2222221111111134444432  35778899999886


Q ss_pred             ---CCCEEEEEeCCCC-CChhhHHHHHHHHHHcC
Q 023346          156 ---RGELLLMLDADGA-TKVTDLEKLESQIHAVG  185 (283)
Q Consensus       156 ---~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~  185 (283)
                         ..++++++++|.. ++++.++++++.+...+
T Consensus        92 ~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~  125 (218)
T cd02516          92 PDADPDIVLIHDAARPFVSPELIDRLIDALKEYG  125 (218)
T ss_pred             ccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence               5789999999987 49999999999986654

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=92.34  E-value=1.2  Score=35.73  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEEEeCCCC-CChhhHHHHHHHHHH
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHA  183 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~-~~~~~l~~~~~~~~~  183 (283)
                      ++.++.++. .|.+.++..|+++..  ++.++++-+|.- +.++.++++++.+..
T Consensus        65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~  118 (195)
T TIGR03552        65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE  118 (195)
T ss_pred             CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence            577777653 499999999998753  469999999987 499999999998753

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=92.32  E-value=2.9  Score=34.67  Aligned_cols=90  Identities=9%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGML  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~~a~n~g~~  153 (283)
                      +..+.+...++.+.+        . ..--+|+|+-+  .+    .+.++..++   ++.++..+  ...|.+. +-.+++
T Consensus        24 ~gkpll~~~l~~l~~--------~-~~i~~ivvv~~--~~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~~~~~~   84 (239)
T cd02517          24 AGKPMIQHVYERAKK--------A-KGLDEVVVATD--DE----RIADAVESF---GGKVVMTSPDHPSGTDR-IAEVAE   84 (239)
T ss_pred             CCcCHHHHHHHHHHh--------C-CCCCEEEEECC--cH----HHHHHHHHc---CCEEEEcCcccCchhHH-HHHHHH
Confidence            456666666666654        1 12346777643  12    223333333   35555443  2345554 444555


Q ss_pred             HcCC--CEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346          154 HSRG--ELLLMLDADG-ATKVTDLEKLESQIHAV  184 (283)
Q Consensus       154 ~a~~--d~i~~~D~D~-~~~~~~l~~~~~~~~~~  184 (283)
                      ....  +.++++++|. .++++.+.++++.+...
T Consensus        85 ~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~  118 (239)
T cd02517          85 KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD  118 (239)
T ss_pred             hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence            5554  8999999999 77899999999888655

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=92.18  E-value=1.5  Score=37.03  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+. +.|...|+++.+        . ..--+|+|+-....+...+.+.+...... ..+.++..++..|.+.|+..
T Consensus        25 llpv~g~-plI~~~l~~l~~--------~-~gi~~i~iv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~Gt~~al~~   93 (257)
T cd06428          25 LFPVAGK-PMIHHHIEACAK--------V-PDLKEVLLIGFYPESVFSDFISDAQQEFN-VPIRYLQEYKPLGTAGGLYH   93 (257)
T ss_pred             cCeECCe-eHHHHHHHHHHh--------c-CCCcEEEEEecCCHHHHHHHHHhcccccC-ceEEEecCCccCCcHHHHHH
Confidence            5566665 777776666654        1 12346777765444444444433211111 24555555556788888777


Q ss_pred             HHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          151 GMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       151 g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      +....   ..+.++++.+|..... .+..+++.+.+...
T Consensus        94 a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~  131 (257)
T cd06428          94 FRDQILAGNPSAFFVLNADVCCDF-PLQELLEFHKKHGA  131 (257)
T ss_pred             HHHHhhccCCCCEEEEcCCeecCC-CHHHHHHHHHHcCC
Confidence            76654   2467888999998755 48888887766544

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=91.88  E-value=1.2  Score=35.31  Aligned_cols=52  Identities=13%  Similarity=0.143  Sum_probs=42.5

Q ss_pred             EEEEEc--CCCCCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346          133 VRIILL--GRNHGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAV  184 (283)
Q Consensus       133 ~~~~~~--~~~~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~  184 (283)
                      ++++..  +...|...++-.|+++...++++++++|. .+.++.++++++.+...
T Consensus        62 ~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~  116 (186)
T TIGR02665        62 LPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEAS  116 (186)
T ss_pred             CcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhcc
Confidence            455554  33478899999999988889999999998 56999999999988653

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=91.68  E-value=3.4  Score=33.72  Aligned_cols=43  Identities=7%  Similarity=0.132  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHHHHcC-----CCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346          142 HGKGEAIRKGMLHSR-----GELLLMLDADGAT-KVTDLEKLESQIHAV  184 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~-----~d~i~~~D~D~~~-~~~~l~~~~~~~~~~  184 (283)
                      .|...++..|++...     .++++++++|..+ .++.++++++.+.+.
T Consensus        78 ~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~  126 (223)
T cd02513          78 ASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE  126 (223)
T ss_pred             CCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence            356677777776542     4899999999875 899999999998765

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=91.66  E-value=2.6  Score=33.71  Aligned_cols=94  Identities=10%  Similarity=0.040  Sum_probs=61.4

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +....|...++++.+         .. --+|+|+-+..++.+...+++.       ...+.. ....|....+..|++..
T Consensus        25 ~GkplI~~vi~~l~~---------~~-i~~I~Vv~~~~~~~~~~~l~~~-------~~~~~~-~~g~G~~~~l~~al~~~   86 (183)
T TIGR00454        25 CGRCLIDHVLSPLLK---------SK-VNNIIIATSPHTPKTEEYINSA-------YKDYKN-ASGKGYIEDLNECIGEL   86 (183)
T ss_pred             CCEEHHHHHHHHHHh---------CC-CCEEEEEeCCCHHHHHHHHhhc-------CcEEEe-cCCCCHHHHHHHHhhcc
Confidence            445666666666654         11 3466666554445555544321       122333 44678888999999863


Q ss_pred             -CCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCc
Q 023346          156 -RGELLLMLDADGA-TKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       156 -~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~  187 (283)
                       ..+.++++-+|.. +.++.+.++++.+...+..
T Consensus        87 ~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~  120 (183)
T TIGR00454        87 YFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAP  120 (183)
T ss_pred             cCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCC
Confidence             3678999999987 4999999999988765544

At this time this gene appears to be present only in Archea

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=91.39  E-value=5.5  Score=32.96  Aligned_cols=92  Identities=11%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGML  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~~a~n~g~~  153 (283)
                      +..+.+...++.+.+         ...--+|+|+-+.  +...+.    ...+   +++++..+  ...|.+ .+-.+++
T Consensus        25 ~GkPli~~~i~~l~~---------~~~~~~ivv~t~~--~~i~~~----~~~~---~~~v~~~~~~~~~g~~-~~~~a~~   85 (238)
T PRK13368         25 LGKPMIQHVYERAAQ---------AAGVEEVYVATDD--QRIEDA----VEAF---GGKVVMTSDDHLSGTD-RLAEVML   85 (238)
T ss_pred             CCcCHHHHHHHHHHh---------cCCCCeEEEECCh--HHHHHH----HHHc---CCeEEecCccCCCccH-HHHHHHH
Confidence            345556666666554         1123467776431  233333    3333   34444332  223444 3444666


Q ss_pred             HcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          154 HSRGELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       154 ~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      ....|.++++++|. .+.++.+.++++.+.+.+.
T Consensus        86 ~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~  119 (238)
T PRK13368         86 KIEADIYINVQGDEPMIRPRDIDTLIQPMLDDPS  119 (238)
T ss_pred             hCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCC
Confidence            66678999999998 5689999999998866543

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=91.19  E-value=3.3  Score=33.75  Aligned_cols=93  Identities=17%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +....+..+++.+..         ...--+|+|+-+..   ..+.+.+......  .+.++...  .+...++..|++..
T Consensus        25 ~gkpll~~~l~~l~~---------~~~~~~ivVv~~~~---~~~~~~~~~~~~~--~~~~~~~~--~~~~~sl~~~l~~~   88 (217)
T TIGR00453        25 GGRPLLEHTLDAFLA---------HPAIDEVVVVVSPE---DQEFFQKYLVARA--VPKIVAGG--DTRQDSVRNGLKAL   88 (217)
T ss_pred             CCeEHHHHHHHHHhc---------CCCCCEEEEEEChH---HHHHHHHHhhcCC--cEEEeCCC--chHHHHHHHHHHhC
Confidence            456666666666654         11234677775422   1122222211111  24444332  24567788888877


Q ss_pred             -CCCEEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346          156 -RGELLLMLDADGA-TKVTDLEKLESQIHAV  184 (283)
Q Consensus       156 -~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~  184 (283)
                       ..|+++++++|.. ++++.++++++.+..+
T Consensus        89 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~  119 (217)
T TIGR00453        89 KDAEWVLVHDAARPFVPKELLDRLLEALRKA  119 (217)
T ss_pred             CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence             6899999999985 5999999999988764

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=91.17  E-value=1.7  Score=40.54  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|.-+ .+.|...|+++.+          ..--+|+|+-....+    .++++...   .++.++..+...|.+.++-.
T Consensus        29 llpi~g-kpli~~~l~~l~~----------~gi~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~   90 (481)
T PRK14358         29 LHPVAG-RPMVAWAVKAARD----------LGARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLS   90 (481)
T ss_pred             ecEECC-eeHHHHHHHHHHh----------CCCCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHH
Confidence            345544 4666666666654          123467776543222    23333222   25777777667788888888


Q ss_pred             HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHcCCc
Q 023346          151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~~  187 (283)
                      |++...  .+-++++++|. .+.+..++++++.+.+.+..
T Consensus        91 ~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~  130 (481)
T PRK14358         91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSA  130 (481)
T ss_pred             HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence            887753  23367799998 57889999999888765443

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=91.16  E-value=4.7  Score=33.50  Aligned_cols=95  Identities=14%  Similarity=0.035  Sum_probs=56.3

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC-cchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      ..+.|...|+++.+          ..--+|++|..... +...+.+... ..+. .++.+...+...|.+.|+..+....
T Consensus        30 ~~pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~-~~i~~~~~~~~~G~~~al~~a~~~~   97 (240)
T cd02538          30 DKPMIYYPLSTLML----------AGIREILIISTPEDLPLFKELLGDG-SDLG-IRITYAVQPKPGGLAQAFIIGEEFI   97 (240)
T ss_pred             CEEhHHHHHHHHHH----------CCCCEEEEEeCcchHHHHHHHHhcc-cccC-ceEEEeeCCCCCCHHHHHHHHHHhc
Confidence            45666666666664          22346777654321 2222222110 1111 2354555555678999998888887


Q ss_pred             CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          156 RGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       156 ~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                      ..+-++++.+|..+.+..+.++++.+.+
T Consensus        98 ~~~~~lv~~gD~~~~~~~~~~~~~~~~~  125 (240)
T cd02538          98 GDDPVCLILGDNIFYGQGLSPILQRAAA  125 (240)
T ss_pred             CCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence            6666677789987766678888876654

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=91.15  E-value=2.1  Score=39.78  Aligned_cols=100  Identities=12%  Similarity=0.121  Sum_probs=61.8

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+ ...|...|+++.+          ...-+++++-....+...+.+    .... ..+.++..+...|.+.++-.
T Consensus        26 llpi~g-kpli~~~l~~l~~----------~g~~~iivvv~~~~~~i~~~~----~~~~-~~~~~~~~~~~~Gt~~si~~   89 (482)
T PRK14352         26 LHTLAG-RSMLGHVLHAAAG----------LAPQHLVVVVGHDRERVAPAV----AELA-PEVDIAVQDEQPGTGHAVQC   89 (482)
T ss_pred             eceeCC-ccHHHHHHHHHHh----------cCCCcEEEEECCCHHHHHHHh----hccC-CccEEEeCCCCCCcHHHHHH
Confidence            445544 4466666666654          122366665543222222222    2211 13555655556788888888


Q ss_pred             HHHHcC---CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          151 GMLHSR---GELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       151 g~~~a~---~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      |++...   .+.++++++|. .+.++.++++++.+.+.+.
T Consensus        90 al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~  129 (482)
T PRK14352         90 ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGN  129 (482)
T ss_pred             HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence            888754   37899999998 5789999999998766543

>PLN03183 acetylglucosaminyltransferase family protein; Provisional

Probab=91.15  E-value=11  Score=34.49  Aligned_cols=97  Identities=13%  Similarity=0.068  Sum_probs=55.5

Q ss_pred             CCCCceEEEEEeec-CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHH------HHcCCCcEE
Q 023346           62 DPAEKYISLIIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV------RKYTVDNVR  134 (283)
Q Consensus        62 ~~~~p~vsviip~~-ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~~~~~~~  134 (283)
                      .+..|++.-+|.++ ++.+.++++|+++-.          ..+.=+|-+|--|++.-...+....      ...+  ++.
T Consensus        74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aLYh----------prN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~--NV~  141 (421)
T PLN03183         74 QDKLPRFAYLVSGSKGDLEKLWRTLRALYH----------PRNQYVVHLDLESPAEERLELASRVENDPMFSKVG--NVY  141 (421)
T ss_pred             CCCCCeEEEEEEecCCcHHHHHHHHHHhcC----------CCceEEEEecCCCChHHHHHHHHHhhccchhhccC--cEE
Confidence            44578999999998 666666666555532          2233445566667665433332222      2344  888


Q ss_pred             EEEcCC--C-CCHH--HH-H---HHHHHH-cCCCEEEEEeCCCCCC
Q 023346          135 IILLGR--N-HGKG--EA-I---RKGMLH-SRGELLLMLDADGATK  170 (283)
Q Consensus       135 ~~~~~~--~-~gk~--~a-~---n~g~~~-a~~d~i~~~D~D~~~~  170 (283)
                      ++....  . +|.+  .| +   ...++. ...||+..+-+.+.+-
T Consensus       142 vl~k~~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPL  187 (421)
T PLN03183        142 MITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPL  187 (421)
T ss_pred             EEecceeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccc
Confidence            876532  2 3432  12 1   122232 3568999999888883

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=90.98  E-value=1.5  Score=40.18  Aligned_cols=97  Identities=13%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+ .+.|...|+.+..          ..--+++|+-....+...+    +..... ..+.++......|.+.++-.
T Consensus        27 ll~v~g-kpli~~~l~~l~~----------~gi~~ivvv~~~~~~~i~~----~~~~~~-~~~~~~~~~~~~G~~~sl~~   90 (446)
T PRK14353         27 LHPVAG-RPMLAHVLAAAAS----------LGPSRVAVVVGPGAEAVAA----AAAKIA-PDAEIFVQKERLGTAHAVLA   90 (446)
T ss_pred             cCEECC-chHHHHHHHHHHh----------CCCCcEEEEECCCHHHHHH----HhhccC-CCceEEEcCCCCCcHHHHHH
Confidence            344444 4666666666654          1224666665433222222    222221 13444444456788888888


Q ss_pred             HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHH
Q 023346          151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHA  183 (283)
Q Consensus       151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~  183 (283)
                      +++...  .+.++++++|. .++++.++++++.+++
T Consensus        91 a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~  126 (446)
T PRK14353         91 AREALAGGYGDVLVLYGDTPLITAETLARLRERLAD  126 (446)
T ss_pred             HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence            887652  57788899998 6799999999986654

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=90.70  E-value=4  Score=34.01  Aligned_cols=89  Identities=6%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCCHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGML  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~--~~~~gk~~a~n~g~~  153 (283)
                      +....|...++.+.+         . ..-+|+|+-+  .+...+.    ...+   +++++..  +...|.+.... ++.
T Consensus        25 ~Gkpll~~~l~~l~~---------~-~i~~ivvv~~--~~~i~~~----~~~~---~~~v~~~~~~~~~gt~~~~~-~~~   84 (245)
T PRK05450         25 GGKPMIVRVYERASK---------A-GADRVVVATD--DERIADA----VEAF---GGEVVMTSPDHPSGTDRIAE-AAA   84 (245)
T ss_pred             CCcCHHHHHHHHHHh---------c-CCCeEEEECC--cHHHHHH----HHHc---CCEEEECCCcCCCchHHHHH-HHH
Confidence            445666666666654         1 2346776653  1222222    2232   3444433  33345444333 333


Q ss_pred             Hc---CCCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346          154 HS---RGELLLMLDADG-ATKVTDLEKLESQIHAV  184 (283)
Q Consensus       154 ~a---~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~  184 (283)
                      ..   ..+.++++++|. .++++.++++++.+...
T Consensus        85 ~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~  119 (245)
T PRK05450         85 KLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP  119 (245)
T ss_pred             hcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence            32   468899999999 67999999999988654

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=90.67  E-value=3.6  Score=33.99  Aligned_cols=44  Identities=7%  Similarity=0.027  Sum_probs=36.4

Q ss_pred             CCCHHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346          141 NHGKGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHAV  184 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~  184 (283)
                      ..|...++..|++..    ..|+++++++|..+ .++.++++++.+.+.
T Consensus        75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~  123 (222)
T TIGR03584        75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP  123 (222)
T ss_pred             CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC
Confidence            456778888888764    36999999999888 899999999999874

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals

Probab=90.43  E-value=0.69  Score=44.51  Aligned_cols=53  Identities=17%  Similarity=0.129  Sum_probs=43.0

Q ss_pred             CcEEEEEcCCCCC-----HHHHHHHHHHHc----CCCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346          131 DNVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA  183 (283)
Q Consensus       131 ~~~~~~~~~~~~g-----k~~a~n~g~~~a----~~d~i~~~D~D~~~-~~~~l~~~~~~~~~  183 (283)
                      +.+.++.++++.|     |++|+|..++.+    .+++|+.+|+|... .|..+++.+=.|-+
T Consensus       166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d  228 (720)
T PF03552_consen  166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMD  228 (720)
T ss_pred             CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhcc
Confidence            3788888876655     999999988754    79999999999977 68888887776654

The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=89.96  E-value=4.9  Score=34.37  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=57.6

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~~~~~~~~~~~gk~~a~n  149 (283)
                      .+|..+....|..+++++..         ....-+|+||-+..   -.+.+++...+ .+  .+.++..+...|.+.|+.
T Consensus        26 ll~l~g~~~li~~~l~~l~~---------~~~~~~i~vvt~~~---~~~~v~~~l~~~~~--~~~ii~ep~~~gTa~ai~   91 (274)
T cd02509          26 FLKLFGDKSLLQQTLDRLKG---------LVPPDRILVVTNEE---YRFLVREQLPEGLP--EENIILEPEGRNTAPAIA   91 (274)
T ss_pred             EeEcCCCCcHHHHHHHHHhc---------CCCCCcEEEEechH---HHHHHHHHHhhcCC--CceEEECCCCCCcHHHHH
Confidence            45666666667777766654         11134777776521   12233333322 23  677887777788888887


Q ss_pred             HHHHHcC----CCEEEEEeCCCCCC-hhhHHHHHH
Q 023346          150 KGMLHSR----GELLLMLDADGATK-VTDLEKLES  179 (283)
Q Consensus       150 ~g~~~a~----~d~i~~~D~D~~~~-~~~l~~~~~  179 (283)
                      .++....    .++++++.+|..+. ...+.++++
T Consensus        92 ~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~  126 (274)
T cd02509          92 LAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVK  126 (274)
T ss_pred             HHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHH
Confidence            7776643    57999999998875 344444443

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=89.87  E-value=3.2  Score=38.26  Aligned_cols=95  Identities=9%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|.-+. +.|..+|+++.+          ..--+++++-....+    .++++...    .+.++..+...|.+.++..
T Consensus        24 ll~i~Gk-pli~~~l~~l~~----------~gi~~iivvv~~~~~----~i~~~~~~----~~~~~~~~~~~g~~~al~~   84 (458)
T PRK14354         24 LHKVCGK-PMVEHVVDSVKK----------AGIDKIVTVVGHGAE----EVKEVLGD----RSEFALQEEQLGTGHAVMQ   84 (458)
T ss_pred             hCEeCCc-cHHHHHHHHHHh----------CCCCeEEEEeCCCHH----HHHHHhcC----CcEEEEcCCCCCHHHHHHH
Confidence            3455554 777777777665          112355555432222    22222211    2455555556788888888


Q ss_pred             HHHHcC--CCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346          151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV  184 (283)
Q Consensus       151 g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~~~~~  184 (283)
                      +++...  .+.++++++|. .+.++.++++++.+.+.
T Consensus        85 a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~  121 (458)
T PRK14354         85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH  121 (458)
T ss_pred             HHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc
Confidence            887754  47899999998 57899999999887654

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=89.81  E-value=2.7  Score=33.94  Aligned_cols=104  Identities=15%  Similarity=0.087  Sum_probs=64.0

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC----CCcEEEEEc------CC
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRIILL------GR  140 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~~~~~~~------~~  140 (283)
                      ++|..|..+.|...++.+.+          ..--+++||-....+...+.+.+. ..+.    ..+++++..      +.
T Consensus        23 llpv~g~~pli~~~l~~l~~----------~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   91 (200)
T cd02508          23 AVPFGGRYRLIDFPLSNMVN----------SGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDW   91 (200)
T ss_pred             eeEECCeeeeHHHHHHHHHH----------CCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCc
Confidence            67777764677777777765          224578877665443333333211 0010    113555541      33


Q ss_pred             CCCHHHHHHHHHHHcC---CCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          141 NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      ..|-+.|+..|.....   .+.++++.+|. +.+..+.++++.+.+.+.
T Consensus        92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~~  139 (200)
T cd02508          92 YRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESGA  139 (200)
T ss_pred             ccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcCC
Confidence            5788999988887653   57888999998 455678888887766543

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=89.29  E-value=2.3  Score=39.14  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +..+.+...++++..          ...-+++||-....+    .++++...   ..++++.++...|.+.++..+++..
T Consensus        31 ~gkpli~~~l~~l~~----------~~~~~iivv~~~~~~----~i~~~~~~---~~~~~v~~~~~~Gt~~al~~a~~~l   93 (456)
T PRK14356         31 LGEPMLRFVYRALRP----------LFGDNVWTVVGHRAD----MVRAAFPD---EDARFVLQEQQLGTGHALQCAWPSL   93 (456)
T ss_pred             CCCcHHHHHHHHHHh----------cCCCcEEEEECCCHH----HHHHhccc---cCceEEEcCCCCCcHHHHHHHHHHH
Confidence            445666666665543          222367666543222    22222221   2567777766678787887777654


Q ss_pred             ---CCCEEEEEeCCC-CCChhhHHHHHHHHH
Q 023346          156 ---RGELLLMLDADG-ATKVTDLEKLESQIH  182 (283)
Q Consensus       156 ---~~d~i~~~D~D~-~~~~~~l~~~~~~~~  182 (283)
                         ..+.++++++|. .++++.++++++...
T Consensus        94 ~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~  124 (456)
T PRK14356         94 TAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA  124 (456)
T ss_pred             hhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence               358999999999 578999999998764

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=89.27  E-value=2.9  Score=34.06  Aligned_cols=99  Identities=12%  Similarity=0.025  Sum_probs=54.5

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~gk~~a~  148 (283)
                      ++|..|. ..|..+|+++..          ..--+|+|+-+..    .+.++++..+.  ...++.++..+...|.+.++
T Consensus        23 ll~~~g~-pli~~~l~~l~~----------~~~~~iivv~~~~----~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l   87 (220)
T cd06426          23 MLKVGGK-PILETIIDRFIA----------QGFRNFYISVNYL----AEMIEDYFGDGSKFGVNISYVREDKPLGTAGAL   87 (220)
T ss_pred             cCeECCc-chHHHHHHHHHH----------CCCcEEEEECccC----HHHHHHHHCCccccCccEEEEECCCCCcchHHH
Confidence            3444554 677777777665          1122666665432    22222322211  11235555554456767776


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      ..+.+ ...+.++++.+|.... ..+.++++.+.+...
T Consensus        88 ~~~~~-~~~~~~lv~~~D~i~~-~~~~~l~~~~~~~~~  123 (220)
T cd06426          88 SLLPE-KPTDPFLVMNGDILTN-LNYEHLLDFHKENNA  123 (220)
T ss_pred             HHHHh-hCCCCEEEEcCCEeec-cCHHHHHHHHHhcCC
Confidence            54443 3367788889997554 567788887766543

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=89.12  E-value=4.1  Score=34.46  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh--hHHHHHHHHHHcCC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAVGR  186 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~--~l~~~~~~~~~~~~  186 (283)
                      .+.++..+...|.+.++..+......+-++++.+|..+...  .+.++++.+.+...
T Consensus        94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~  150 (267)
T cd02541          94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA  150 (267)
T ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence            45566666668999999999988766777888899887654  58999988765433

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=88.91  E-value=12  Score=31.31  Aligned_cols=88  Identities=8%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc-C-CCCCHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-G-RNHGKGEAIRKGML  153 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~-~~~gk~~a~n~g~~  153 (283)
                      +....|..+++.+.+         . .--+|+|+-|.  +.    +.+...++   +++++.. + ...|.. ....+++
T Consensus        22 ~GkPli~~~le~~~~---------~-~~d~VvVvt~~--~~----i~~~~~~~---g~~~v~~~~~~~~Gt~-r~~~~~~   81 (238)
T TIGR00466        22 FGKPMIVHVAENANE---------S-GADRCIVATDD--ES----VAQTCQKF---GIEVCMTSKHHNSGTE-RLAEVVE   81 (238)
T ss_pred             CCcCHHHHHHHHHHh---------C-CCCeEEEEeCH--HH----HHHHHHHc---CCEEEEeCCCCCChhH-HHHHHHH
Confidence            456667777777654         1 23467776542  22    23333333   3455442 2 233422 2233333


Q ss_pred             H---cCCCEEEEEeCCCC-CChhhHHHHHHHHHH
Q 023346          154 H---SRGELLLMLDADGA-TKVTDLEKLESQIHA  183 (283)
Q Consensus       154 ~---a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~  183 (283)
                      .   ...|+++++|+|.- +.++.++++++.+.+
T Consensus        82 ~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~  115 (238)
T TIGR00466        82 KLALKDDERIVNLQGDEPFIPKEIIRQVADNLAT  115 (238)
T ss_pred             HhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhc
Confidence            2   25689999999988 599999999999854

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=88.44  E-value=7.8  Score=32.57  Aligned_cols=56  Identities=13%  Similarity=0.110  Sum_probs=40.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh--hHHHHHHHHHHcCCc
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAVGRK  187 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~--~l~~~~~~~~~~~~~  187 (283)
                      ++.+.......|.+.++-.+......+-++++.+|..+...  .+.++++.+.+.+..
T Consensus        94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~  151 (260)
T TIGR01099        94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS  151 (260)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence            34455455568899999888887655667778888887654  789999888765443

Built to distinquish between the highly similar genes galU and galF

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=88.33  E-value=9.2  Score=31.20  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=58.4

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc----C-CCcEEEEEcCCCCCHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY----T-VDNVRIILLGRNHGKG  145 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~----~-~~~~~~~~~~~~~gk~  145 (283)
                      ++|.-|. +.|..+|+.+.+          ..--+|+||-...   ..+.++++..+.    . ...+.+.......|.+
T Consensus        25 Llpv~g~-pli~~~l~~l~~----------~g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~   90 (214)
T cd04198          25 LLPVANK-PMIWYPLDWLEK----------AGFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTA   90 (214)
T ss_pred             cCEECCe-eHHHHHHHHHHH----------CCCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChH
Confidence            4555554 667777777665          2234777776421   122233333322    1 0123333344568999


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      .++..+......+ ++++.+|.. .+..+..+++.+.+.+.
T Consensus        91 ~al~~~~~~i~~d-~lv~~~D~i-~~~~l~~~l~~h~~~~~  129 (214)
T cd04198          91 DSLRHIRKKIKKD-FLVLSCDLI-TDLPLIELVDLHRSHDA  129 (214)
T ss_pred             HHHHHHHhhcCCC-EEEEeCccc-cccCHHHHHHHHhccCC
Confidence            9999988877665 677888854 45567788877765543

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=88.30  E-value=4.8  Score=33.10  Aligned_cols=96  Identities=14%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHH-HHHHcCCCcEEEEEc-CCCCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-FVRKYTVDNVRIILL-GRNHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-~~~~~~~~~~~~~~~-~~~~gk~~a~  148 (283)
                      ++|..+. +.|..+|+++.+          ..--+++||-. ......+.+.+ +.....  ++.++.. +...|.+.++
T Consensus        23 ll~i~g~-pli~~~l~~l~~----------~g~~~ivvv~~-~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~g~~~~l   88 (231)
T cd04183          23 LIEVDGK-PMIEWVIESLAK----------IFDSRFIFICR-DEHNTKFHLDESLKLLAP--NATVVELDGETLGAACTV   88 (231)
T ss_pred             eeEECCE-EHHHHHHHhhhc----------cCCceEEEEEC-hHHhhhhhHHHHHHHhCC--CCEEEEeCCCCCcHHHHH
Confidence            3455554 666666666654          12235565553 22222222222 222222  4444433 3467889999


Q ss_pred             HHHHHHcC-CCEEEEEeCCCCCChhhHHHHHHHH
Q 023346          149 RKGMLHSR-GELLLMLDADGATKVTDLEKLESQI  181 (283)
Q Consensus       149 n~g~~~a~-~d~i~~~D~D~~~~~~~l~~~~~~~  181 (283)
                      -.|..... .+.++++.+|.....+... ++..+
T Consensus        89 ~~a~~~l~~~~~~lv~~~D~i~~~~~~~-~~~~~  121 (231)
T cd04183          89 LLAADLIDNDDPLLIFNCDQIVESDLLA-FLAAF  121 (231)
T ss_pred             HHHHhhcCCCCCEEEEecceeeccCHHH-HHHHh
Confidence            88888764 4778889999998877554 44443

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=88.15  E-value=11  Score=29.72  Aligned_cols=71  Identities=15%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHH
Q 023346          103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQI  181 (283)
Q Consensus       103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~  181 (283)
                      -.||+++-+-++..|.+.+++.       .+.+++.+ ..|.-.-+|.+++....+ ++++-+|-.+ .|..+..+++.+
T Consensus        41 ~d~i~v~isp~tp~t~~~~~~~-------gv~vi~tp-G~GYv~Dl~~al~~l~~P-~lvvsaDLp~l~~~~i~~vi~~~  111 (177)
T COG2266          41 VDEIIVAISPHTPKTKEYLESV-------GVKVIETP-GEGYVEDLRFALESLGTP-ILVVSADLPFLNPSIIDSVIDAA  111 (177)
T ss_pred             cCcEEEEeCCCCHhHHHHHHhc-------CceEEEcC-CCChHHHHHHHHHhcCCc-eEEEecccccCCHHHHHHHHHHH
Confidence            4589999999999999988765       68999887 778999999999988774 5556677555 899999999988


Q ss_pred             H
Q 023346          182 H  182 (283)
Q Consensus       182 ~  182 (283)
                      .
T Consensus       112 ~  112 (177)
T COG2266         112 A  112 (177)
T ss_pred             h
Confidence            7

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=87.79  E-value=2.4  Score=38.02  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346          142 HGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~  185 (283)
                      .|...++-.|+++...++++++++|. .++++.++++++.+...+
T Consensus        78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~  122 (366)
T PRK14489         78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEG  122 (366)
T ss_pred             CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccC
Confidence            58888899999998889999999996 469999999999876543

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=87.56  E-value=5.5  Score=35.85  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +..+.+..+++.+.+         ...--+|+||-+..   ..+..+.+.....  .++++..  ..+...++..|++..
T Consensus        31 ~GkPll~~tl~~l~~---------~~~i~~IvVVv~~~---~~~~~~~~~~~~~--~v~~v~g--G~~r~~SV~~gL~~l   94 (378)
T PRK09382         31 GGKPLWLHVLENLSS---------APAFKEIVVVIHPD---DIAYMKKALPEIK--FVTLVTG--GATRQESVRNALEAL   94 (378)
T ss_pred             CCeeHHHHHHHHHhc---------CCCCCeEEEEeChH---HHHHHHHhcccCC--eEEEeCC--CchHHHHHHHHHHhc
Confidence            556677777777665         11123677765422   2233333322222  2444332  234677788888887


Q ss_pred             CCCEEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346          156 RGELLLMLDADGA-TKVTDLEKLESQIHAV  184 (283)
Q Consensus       156 ~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~  184 (283)
                      ..|++++.|+|.. ++++.++++++.+...
T Consensus        95 ~~d~VLVhdadrPfv~~e~I~~li~~~~~~  124 (378)
T PRK09382         95 DSEYVLIHDAARPFVPKELIDRLIEALDKA  124 (378)
T ss_pred             CCCeEEEeeccccCCCHHHHHHHHHHhhcC
Confidence            7799999999964 4899999999987654

>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]

Probab=87.50  E-value=1.9  Score=35.25  Aligned_cols=82  Identities=13%  Similarity=0.242  Sum_probs=53.3

Q ss_pred             CCCCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 023346           59 SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL  138 (283)
Q Consensus        59 ~~~~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~  138 (283)
                      -..+...-++.|++|.+.+-+.+.+.+..+.+.+..+     ...-+|+|++.  .|                .+     
T Consensus        67 ~~~~aS~HklavlVPfRdRfEELl~FvPHM~~FL~rq-----~v~HHI~vlNQ--vD----------------~f-----  118 (310)
T KOG3917|consen   67 LQTGASYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQ-----NVSHHILVLNQ--VD----------------PF-----  118 (310)
T ss_pred             cccCccceeEEEEechHHHHHHHHHhhHHHHHHHhhc-----CcceEEEEeec--cC----------------cc-----
Confidence            3445567889999999888776666666666655532     33445555542  11                11     


Q ss_pred             CCCCCHHHHHHHHHHHcC--CCEEEEEeCCCCCC
Q 023346          139 GRNHGKGEAIRKGMLHSR--GELLLMLDADGATK  170 (283)
Q Consensus       139 ~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~~~  170 (283)
                        +.+.+.-+|.|+..|.  .|||++-|-|-.+-
T Consensus       119 --RFNRAsLINVGf~eas~~~DYiaMhDVDLLPl  150 (310)
T KOG3917|consen  119 --RFNRASLINVGFNEASRLCDYIAMHDVDLLPL  150 (310)
T ss_pred             --eechhhheecchhhhcchhceeeecccccccC
Confidence              2345666777777664  79999999998763

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis

Probab=87.47  E-value=4.2  Score=34.95  Aligned_cols=105  Identities=11%  Similarity=0.080  Sum_probs=63.8

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC---C--
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---N--  141 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~---~--  141 (283)
                      .++||....|-...+..++.|++.        ....++++.|++|+.+++..+.+.+...... ..+.++..+.   .  
T Consensus         2 ~~~iv~~~~~y~~~~~~~i~Sil~--------n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~-~~i~f~~i~~~~~~~~   72 (280)
T cd06431           2 HVAIVCAGYNASRDVVTLVKSVLF--------YRRNPLHFHLITDEIARRILATLFQTWMVPA-VEVSFYNAEELKSRVS   72 (280)
T ss_pred             EEEEEEccCCcHHHHHHHHHHHHH--------cCCCCEEEEEEECCcCHHHHHHHHHhccccC-cEEEEEEhHHhhhhhc
Confidence            377888775556777888888887        3455799999999887776666654433322 2455555421   0  


Q ss_pred             ----CCHHHH---HHHHHH-Hc--CCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346          142 ----HGKGEA---IRKGML-HS--RGELLLMLDADGATKVTDLEKLESQI  181 (283)
Q Consensus       142 ----~gk~~a---~n~g~~-~a--~~d~i~~~D~D~~~~~~~l~~~~~~~  181 (283)
                          ...+.+   ....+. .-  .-|=++.+|+|.++.. .|+++.+.+
T Consensus        73 ~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~-di~eL~~~~  121 (280)
T cd06431          73 WIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFAT-DIAELWKIF  121 (280)
T ss_pred             cCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcC-CHHHHHHHh
Confidence                111111   111222 22  3689999999998864 455666654

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=87.45  E-value=6  Score=35.06  Aligned_cols=100  Identities=11%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             eecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC-CCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 023346           73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG  151 (283)
Q Consensus        73 p~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g  151 (283)
                      |.-+. +.+...|+++.+          ..--+++|+-.. ..+...+.+.+. ..+. .++.++..+...|.+.++-.+
T Consensus        26 pv~g~-pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~G~~~al~~a   92 (353)
T TIGR01208        26 PVANK-PILQYAIEDLAE----------AGITDIGIVVGPVTGEEIKEIVGEG-ERFG-AKITYIVQGEPLGLAHAVYTA   92 (353)
T ss_pred             EECCE-eHHHHHHHHHHH----------CCCCEEEEEeCCCCHHHHHHHHhcc-cccC-ceEEEEECCCCCCHHHHHHHH
Confidence            44454 777777777765          223467666554 322233332211 1111 245566555578999999999


Q ss_pred             HHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          152 MLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       152 ~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      ++....+-++++.+|...+ ..+.++++.+.+...
T Consensus        93 ~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~~  126 (353)
T TIGR01208        93 RDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKDY  126 (353)
T ss_pred             HHhcCCCCEEEEECCeecC-ccHHHHHHHHHhcCC
Confidence            8877544456678998775 567788887765443

Alternate name: dTDP-D-glucose synthase

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=87.31  E-value=6.9  Score=31.45  Aligned_cols=79  Identities=13%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             CCceEEEEEeCCCC--cc-hHHHHHHHHHHcCCCcEEEEEcCCC-CC----HHHHHHHHHHHcC-CCEEEEEeCCCCCCh
Q 023346          101 SFTYEVLIIDDGSS--DG-TKRVAFDFVRKYTVDNVRIILLGRN-HG----KGEAIRKGMLHSR-GELLLMLDADGATKV  171 (283)
Q Consensus       101 ~~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~-~g----k~~a~n~g~~~a~-~d~i~~~D~D~~~~~  171 (283)
                      ...++++++-..+.  +. ..+.+.+-.+++.  .+-.....+. .+    --.+++.+.+++. .++++.+|+|..+.+
T Consensus        18 ~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~--Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~   95 (195)
T PF01762_consen   18 GVRVKVVFVVGESPNSDSDLQEALQEEAEKYG--DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNP   95 (195)
T ss_pred             CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcC--ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEeh
Confidence            45777777776655  33 2333444445555  5655554432 22    2366677777776 899999999999999


Q ss_pred             hhHHHHHHHH
Q 023346          172 TDLEKLESQI  181 (283)
Q Consensus       172 ~~l~~~~~~~  181 (283)
                      +.|.+.+...
T Consensus        96 ~~l~~~L~~~  105 (195)
T PF01762_consen   96 DRLVSFLKSL  105 (195)
T ss_pred             HHhhhhhhhc
Confidence            8888877776

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=87.18  E-value=1.8  Score=35.35  Aligned_cols=68  Identities=10%  Similarity=0.121  Sum_probs=40.9

Q ss_pred             ceEEEEEeCCCCc--chHHHHHHHHHHcCCCcEEEEEc--CC-------CCCH---HHHHHHHHHHcC-------CCEEE
Q 023346          103 TYEVLIIDDGSSD--GTKRVAFDFVRKYTVDNVRIILL--GR-------NHGK---GEAIRKGMLHSR-------GELLL  161 (283)
Q Consensus       103 ~~eiivvdd~s~d--~t~~~~~~~~~~~~~~~~~~~~~--~~-------~~gk---~~a~n~g~~~a~-------~d~i~  161 (283)
                      ++.-|||+|+..-  .+..++++.       ++.+.+.  +.       +..+   ...+|.|++..+       .-+|.
T Consensus        10 ~l~WIVVEd~~~~~~~v~~lL~~s-------gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVy   82 (207)
T PF03360_consen   10 PLHWIVVEDSEETTPLVARLLRRS-------GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVY   82 (207)
T ss_dssp             SEEEEEEESSSS--HHHHHHHHHH-------TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEE
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHc-------CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEE
Confidence            8999999998643  255666554       2333322  21       1112   458899998765       35888


Q ss_pred             EEeCCCCCChhhHHHH
Q 023346          162 MLDADGATKVTDLEKL  177 (283)
Q Consensus       162 ~~D~D~~~~~~~l~~~  177 (283)
                      |.|+|...+...+++|
T Consensus        83 FaDDdNtYdl~LF~em   98 (207)
T PF03360_consen   83 FADDDNTYDLRLFDEM   98 (207)
T ss_dssp             E--TTSEE-HHHHHHH
T ss_pred             ECCCCCeeeHHHHHHH
Confidence            9999999988887774

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=86.92  E-value=3.7  Score=33.16  Aligned_cols=54  Identities=20%  Similarity=0.174  Sum_probs=46.8

Q ss_pred             cEEEEEcCCCC-CHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346          132 NVRIILLGRNH-GKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVG  185 (283)
Q Consensus       132 ~~~~~~~~~~~-gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~  185 (283)
                      .+.++...... |.-.++-.|+++..+++++++=.|+-. .++.++++.+.+.+.+
T Consensus        61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            46777776665 999999999999999999999999887 7888999999887766

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=86.90  E-value=8.8  Score=32.20  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          141 NHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      ..|.+.++-.+.+...+ +.++++++|.....+. ..+++.+.....
T Consensus       101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~  146 (253)
T cd02524         101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGK  146 (253)
T ss_pred             ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCC
Confidence            34568888888888765 8899999999887766 888876655433

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=86.53  E-value=6.3  Score=36.16  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+. +.+..+|+++.+        . .  -+|+|+-+...    +.+.++...    .+.++..+...|.+.++..
T Consensus        22 l~~v~gk-pli~~~l~~l~~--------~-~--~~i~vv~~~~~----~~i~~~~~~----~~~~~~~~~~~g~~~ai~~   81 (448)
T PRK14357         22 LHKISGK-PMINWVIDTAKK--------V-A--QKVGVVLGHEA----ELVKKLLPE----WVKIFLQEEQLGTAHAVMC   81 (448)
T ss_pred             eeEECCe-eHHHHHHHHHHh--------c-C--CcEEEEeCCCH----HHHHHhccc----ccEEEecCCCCChHHHHHH
Confidence            5566554 777777776665        1 1  35666654221    233333221    3555655556788899988


Q ss_pred             HHHHcC-CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       151 g~~~a~-~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      +++... .+.++++++|. .+.+..++++++.+.+.+.
T Consensus        82 a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~  119 (448)
T PRK14357         82 ARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGA  119 (448)
T ss_pred             HHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCC
Confidence            888764 58999999998 5688889999988865433

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=86.44  E-value=11  Score=33.78  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~gk~~a~  148 (283)
                      ++|.-| .+.|.-.|+++.+          ..--|++++-.    ...+.++++....  ...++.++......|-+.++
T Consensus        26 llpI~g-kPii~~~l~~L~~----------~Gv~eivi~~~----y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l   90 (358)
T COG1208          26 LLPIAG-KPLIEYVLEALAA----------AGVEEIVLVVG----YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGAL   90 (358)
T ss_pred             cceeCC-ccHHHHHHHHHHH----------CCCcEEEEEec----cchHHHHHHHhcccccCCceEEEecCCcCccHHHH
Confidence            345544 3445555555543          33557777733    2333333333331  12478888888789999999


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      -.+.....++-++++.+|...+-+ +..+++...+.
T Consensus        91 ~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~  125 (358)
T COG1208          91 KNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK  125 (358)
T ss_pred             HHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence            999999988889999999999999 99999988877

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=86.21  E-value=13  Score=32.23  Aligned_cols=53  Identities=11%  Similarity=0.107  Sum_probs=38.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCC-CEEEEEeCCCCCCh-------hhHHHHHHHHHHcC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRG-ELLLMLDADGATKV-------TDLEKLESQIHAVG  185 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~-d~i~~~D~D~~~~~-------~~l~~~~~~~~~~~  185 (283)
                      +++++..++..|-+.|+-.+...... +++++ -+|...++       -.++++++.+.+..
T Consensus        98 ~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv-~gD~l~~~~~~~~~~~~l~~li~~~~~~~  158 (297)
T TIGR01105        98 TIMNVRQAQPLGLGHSILCARPVVGDNPFVVV-LPDIIIDDATADPLRYNLAAMIARFNETG  158 (297)
T ss_pred             eEEEeeCCCcCchHHHHHHHHHHhCCCCEEEE-ECCeeccccccccchhHHHHHHHHHHHhC
Confidence            46777777789999999999888753 55554 48887754       37888888775443

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=85.32  E-value=5.9  Score=36.49  Aligned_cols=94  Identities=15%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..+ ...++..++++.+          ..--+++++-....    +.+++....   .+++++..++..|.+.++-.
T Consensus        27 l~~i~g-kpli~~~i~~l~~----------~gi~~i~vv~~~~~----~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~   88 (456)
T PRK09451         27 LHTLAG-KPMVQHVIDAANE----------LGAQHVHLVYGHGG----DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQ   88 (456)
T ss_pred             cceeCC-hhHHHHHHHHHHh----------cCCCcEEEEECCCH----HHHHHhhcc---CCcEEEECCCCCCcHHHHHH
Confidence            344444 4555566665543          12336666654221    223332221   15677766666788888888


Q ss_pred             HHHHcC-CCEEEEEeCCC-CCChhhHHHHHHHHH
Q 023346          151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIH  182 (283)
Q Consensus       151 g~~~a~-~d~i~~~D~D~-~~~~~~l~~~~~~~~  182 (283)
                      ++.... .+.++++++|. .+.+..++++++...
T Consensus        89 a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~  122 (456)
T PRK09451         89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAKP  122 (456)
T ss_pred             HHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence            887753 57899999998 568888999887643

>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide []

Probab=84.67  E-value=5.1  Score=34.98  Aligned_cols=97  Identities=9%  Similarity=0.025  Sum_probs=56.1

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc-hHHHHHHH-HHHcCCCcEEEE--EcCCCCC------HH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDF-VRKYTVDNVRII--LLGRNHG------KG  145 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~-t~~~~~~~-~~~~~~~~~~~~--~~~~~~g------k~  145 (283)
                      .++....+|++++.+         ..|..|||+.-=..+|- ..+ ..++ ..+.|  +..++  ......|      .-
T Consensus        17 ~~~~~t~~~l~siR~---------~~P~A~IILSTW~~~d~~~l~-~D~vv~s~DP--G~~~~~~~~~~~~~~~NiNrQi   84 (311)
T PF07507_consen   17 QEPDITKNCLASIRK---------HFPGAEIILSTWEGQDISGLD-YDQVVISDDP--GSNVVLYKKDGKPGPNNINRQI   84 (311)
T ss_pred             ccchhHHHHHHHHHH---------hCCCCEEEEECCCCCCcccCC-cceEEecCCC--CcceeeccCCCCCcccchhHHH
Confidence            456667888888876         46688999943211111 111 1111 12223  33332  1111112      12


Q ss_pred             HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       146 ~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      .+-..|+++++.+|++=+-+|..+..+.+-++.+.+.+.
T Consensus        85 ~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~~  123 (311)
T PF07507_consen   85 VSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPDR  123 (311)
T ss_pred             HHHHHHHHHhCCceEEEEcccccccchHHHHHHHHhccc
Confidence            333569999999999999999999877766666665553

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose

Probab=84.41  E-value=6.7  Score=33.52  Aligned_cols=100  Identities=22%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCH--
Q 023346           69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGK--  144 (283)
Q Consensus        69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~gk--  144 (283)
                      -|||++.+.  .+...+ .+++.++..   -...++||+.--+  +|-+.+..+++....  ...+++-+..++..++  
T Consensus         3 GIVi~~g~~--~~~~a~-~lI~~LR~~---g~~LPIEI~~~~~--~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~   74 (271)
T PF11051_consen    3 GIVITAGDK--YLWLAL-RLIRVLRRL---GNTLPIEIIYPGD--DDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSF   74 (271)
T ss_pred             EEEEEecCc--cHHHHH-HHHHHHHHh---CCCCCEEEEeCCc--cccCHHHHHHHhhhhhhheecceEEeecccccccc
Confidence            488888773  333222 333333332   3566889888731  222333333332200  0013333333322222  


Q ss_pred             ---HHH-HHHHHHHcCCCEEEEEeCCCCC--ChhhHHH
Q 023346          145 ---GEA-IRKGMLHSRGELLLMLDADGAT--KVTDLEK  176 (283)
Q Consensus       145 ---~~a-~n~g~~~a~~d~i~~~D~D~~~--~~~~l~~  176 (283)
                         +.. --.|+-.++-+=|+++|+|+.+  +|+.|-+
T Consensus        75 ~~~~~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~  112 (271)
T PF11051_consen   75 SKKGFQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFE  112 (271)
T ss_pred             ccCCchhhhhhhhhCCcceEEEEcCCcccccCHHHHhc
Confidence               222 1124445778889999999998  4554433

It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=84.27  E-value=21  Score=28.97  Aligned_cols=92  Identities=10%  Similarity=0.235  Sum_probs=56.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHHcC
Q 023346           78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHSR  156 (283)
Q Consensus        78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~a~  156 (283)
                      .+.+..+++.+++         ...--+|+|.-|  ++...++++++    .   +.++..+ ...........++.+..
T Consensus        24 kpLi~~~i~~a~~---------s~~~d~IvVaTd--~~~i~~~~~~~----g---~~v~~~~~~~~~~~~r~~~~~~~~~   85 (217)
T PF02348_consen   24 KPLIEYVIERAKQ---------SKLIDEIVVATD--DEEIDDIAEEY----G---AKVIFRRGSLADDTDRFIEAIKHFL   85 (217)
T ss_dssp             EEHHHHHHHHHHH---------TTTTSEEEEEES--SHHHHHHHHHT----T---SEEEE--TTSSSHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHh---------CCCCCeEEEeCC--CHHHHHHHHHc----C---CeeEEcChhhcCCcccHHHHHHHhh
Confidence            4455556666554         233346776543  23334444444    2   3333333 33445555567777776


Q ss_pred             CC---EEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346          157 GE---LLLMLDADGAT-KVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       157 ~d---~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~  187 (283)
                      .+   +++.+.+|+.+ +|..+.++++.+.+....
T Consensus        86 ~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~  120 (217)
T PF02348_consen   86 ADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED  120 (217)
T ss_dssp             CSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred             hhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence            66   99999999877 899999999999988665

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan

Probab=84.17  E-value=1.3  Score=38.74  Aligned_cols=43  Identities=16%  Similarity=-0.008  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      .--..-+|.|+..+++++++++|.|..+.++.-+.+.+.+...
T Consensus       113 YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~  155 (317)
T PF13896_consen  113 YPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRN  155 (317)
T ss_pred             CChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhh
Confidence            3467889999999999999999999999999888877766554

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=84.05  E-value=15  Score=30.82  Aligned_cols=46  Identities=15%  Similarity=0.200  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      +..|-+.|+..+.+....+.++++++|.... ..+.++++.+.+...
T Consensus       101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~  146 (254)
T TIGR02623       101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGK  146 (254)
T ss_pred             CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCC
Confidence            3467788888888877667777999998764 456677776655433

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=83.63  E-value=15  Score=30.65  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 023346           75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH  154 (283)
Q Consensus        75 ~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~  154 (283)
                      ++....++.+|+.++.         ...--||||+-....+...+.+.+ ....  .++.++..  ..........|++.
T Consensus        29 l~g~pll~~tl~~f~~---------~~~i~~Ivvv~~~~~~~~~~~~~~-~~~~--~~v~~v~G--G~~R~~SV~~gL~~   94 (230)
T COG1211          29 LGGRPLLEHTLEAFLE---------SPAIDEIVVVVSPEDDPYFEKLPK-LSAD--KRVEVVKG--GATRQESVYNGLQA   94 (230)
T ss_pred             ECCEEehHHHHHHHHh---------CcCCCeEEEEEChhhhHHHHHhhh-hccC--CeEEEecC--CccHHHHHHHHHHH
Confidence            4667778888888887         222458888877655554443322 1111  25666653  34567777888888


Q ss_pred             cC---CCEEEEEeCCCCC-ChhhHHHHHHHHH
Q 023346          155 SR---GELLLMLDADGAT-KVTDLEKLESQIH  182 (283)
Q Consensus       155 a~---~d~i~~~D~D~~~-~~~~l~~~~~~~~  182 (283)
                      ..   .+||++.|+==.+ +++.+++++....
T Consensus        95 ~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~  126 (230)
T COG1211          95 LSKYDSDWVLVHDAARPFLTPKLIKRLIELAD  126 (230)
T ss_pred             hhccCCCEEEEeccccCCCCHHHHHHHHHhhc
Confidence            76   8999999987444 8899999994443

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=83.26  E-value=9.6  Score=31.74  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=51.8

Q ss_pred             EEEEEeecC-CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC
Q 023346           68 ISLIIPAFN-EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG  143 (283)
Q Consensus        68 vsviip~~n-e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~---~~g  143 (283)
                      |.-+|-+|+ ..+.    ++.+++.++      .....=+|.||-.+++...+.++++....+  +++++....   .+|
T Consensus         1 iAylil~h~~~~~~----~~~l~~~l~------~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~--nv~~v~~r~~v~WG~   68 (244)
T PF02485_consen    1 IAYLILAHKNDPEQ----LERLLRLLY------HPDNDFYIHIDKKSPDYFYEEIKKLISCFP--NVHFVPKRVDVRWGG   68 (244)
T ss_dssp             EEEEEEESS--HHH----HHHHHHHH--------TTSEEEEEE-TTS-HHHHHHHHHHHCT-T--TEEE-SS-----TTS
T ss_pred             CEEEEEecCCCHHH----HHHHHHHhc------CCCCEEEEEEcCCCChHHHHHHHHhcccCC--ceeecccccccccCC
Confidence            356777876 4433    344444333      122344566777777777777777666666  888887432   234


Q ss_pred             HH--H----HHHHHHH-HcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          144 KG--E----AIRKGML-HSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       144 k~--~----a~n~g~~-~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      .+  .    .+..+++ ..+.++++++-+++.+-.. .+++.+.|+.+
T Consensus        69 ~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s-~~~i~~~l~~~  115 (244)
T PF02485_consen   69 FSLVEATLNLLREALKRDGDWDYFILLSGQDYPLKS-NEEIHEFLESN  115 (244)
T ss_dssp             HHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS--HHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhcCCCCcEEEEcccccccccc-hHHHHHHHHhc
Confidence            22  2    3344455 2467898888888776321 23344555555

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=81.39  E-value=13  Score=31.46  Aligned_cols=78  Identities=17%  Similarity=0.243  Sum_probs=46.6

Q ss_pred             ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc--CCCEEEEEeCCCC-CChhhHHHHHH
Q 023346          103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGA-TKVTDLEKLES  179 (283)
Q Consensus       103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~~~~  179 (283)
                      --+|+||.....   .+.++.....++ ..+.++  ....+.....-.|++..  ..++|++.|++-. +.++.+.++++
T Consensus        68 i~~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~  141 (252)
T PLN02728         68 VKEIVVVCDPSY---RDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLK  141 (252)
T ss_pred             CCeEEEEeCHHH---HHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHH
Confidence            346777754321   223333323332 134433  22344567777788875  3578999998654 48999999999


Q ss_pred             HHHHcCC
Q 023346          180 QIHAVGR  186 (283)
Q Consensus       180 ~~~~~~~  186 (283)
                      ....+..
T Consensus       142 ~~~~~ga  148 (252)
T PLN02728        142 DAAVHGA  148 (252)
T ss_pred             HHhhCCe
Confidence            8876543

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit

Probab=80.95  E-value=5.8  Score=40.01  Aligned_cols=55  Identities=9%  Similarity=-0.015  Sum_probs=41.0

Q ss_pred             CCceEEEEEeecCC---C-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHH
Q 023346           64 AEKYISLIIPAFNE---E-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF  124 (283)
Q Consensus        64 ~~p~vsviip~~ne---~-~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~  124 (283)
                      ..|.|.|.|++-+.   + -....++-|+++      .+||..++-+.|.|||.+.-|.+.+.+.
T Consensus       285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA  343 (1044)
T PLN02915        285 RLAPVDVFVSTVDPLKEPPIITANTVLSILA------VDYPVDKVSCYVSDDGASMLLFDTLSET  343 (1044)
T ss_pred             cCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceeEEEecCCchHhHHHHHHHH
Confidence            58889999998654   2 233445566665      5678889999999999999988766543

>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2

Probab=80.48  E-value=26  Score=27.47  Aligned_cols=42  Identities=14%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHH----HHcCCCEEEEEeCCCCCChhhHHHHHHHH
Q 023346          140 RNHGKGEAIRKGM----LHSRGELLLMLDADGATKVTDLEKLESQI  181 (283)
Q Consensus       140 ~~~gk~~a~n~g~----~~a~~d~i~~~D~D~~~~~~~l~~~~~~~  181 (283)
                      .|.||-.....-+    +..+-++++++|+-+.+.++.|-++.++|
T Consensus       118 ~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf  163 (163)
T PF01644_consen  118 KNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF  163 (163)
T ss_pred             ccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence            4666655444433    44678999999999999999999988764

4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process

>PRK10122 GalU regulator GalF; Provisional

Probab=80.15  E-value=33  Score=29.73  Aligned_cols=54  Identities=17%  Similarity=0.253  Sum_probs=39.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcC-CCEEEEEeCCCCCChh-------hHHHHHHHHHHcCC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSR-GELLLMLDADGATKVT-------DLEKLESQIHAVGR  186 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~-~d~i~~~D~D~~~~~~-------~l~~~~~~~~~~~~  186 (283)
                      ++.++..++..|.+.|+-.+..... .+++++. +|..++++       .+.++++.+.+...
T Consensus        98 ~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~  159 (297)
T PRK10122         98 TIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGR  159 (297)
T ss_pred             eEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCC
Confidence            4667777777899999988888764 4666555 88877653       58888887765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
3f1y_A	387	Mannosyl-3-Phosphoglycerate Synthase From Rubrobact		6e-06
3l7m_A	729	Structure Of The Wall Teichoic Acid Polymerase Tagf		4e-04
3l7j_A	729	Structure Of The Wall Teichoic Acid Polymerase Tagf		4e-04
3l7i_A	729	Structure Of The Wall Teichoic Acid Polymerase Tagf		4e-04

>pdb|3F1Y|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus Length = 387

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S ++P+ N    + G +DE ++ L +RA        ++L++D  S DGT  VA     +
Sbjct: 96  VSAVLPSRNVADTVGGIIDE-IHALNERA----PLIDQILVVDADSEDGTAGVAASHGAE 150
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEK------LESQ- 180
              +N  +   G  HGKG+A+ + +  +RG+L+L +DAD       L        LE   
Sbjct: 151 VYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPG 210
Query: 181 ---IHAVGRKEYNHGDSVTVDSTFRISDI 206
              + A  R+ +  G+S+  D   R++++
Sbjct: 211 VRFVKAAYRRPFRKGESIEEDGGGRVTEL 239

>pdb|3L7M|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a Length = 729

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +++I+  +N E  + G L+     ++Q+  +D    + ++I++DGS+D +K++  + ++ 
Sbjct: 4   LTIIVTYYNAEEYITGCLES----IKQQRTQD----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y   N+R I L  N G   A    +        + LDAD
Sbjct: 56  YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93

>pdb|3L7J|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n V Length = 729

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +++I+  +N E  + G L+     ++Q+  +D    + ++I++DGS+D +K++  + ++ 
Sbjct: 4   LTIIVTYYNAEEYITGCLES----IKQQRTQD----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y   N+R I L  N G   A    +        + LDAD
Sbjct: 56  YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93

>pdb|3L7I|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf Length = 729

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +++I+  +N E  + G L+     ++Q+  +D    + ++I++DGS+D +K++  + ++ 
Sbjct: 4   LTIIVTYYNAEEYITGCLES----IKQQRTQD----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y   N+R I L  N G   A    +        + LDAD
Sbjct: 56  YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	2e-19
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	2e-14
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	2e-14
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	3e-14
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	9e-12
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	1e-12
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	4e-09
3bcv_A	240	Putative glycosyltransferase protein; protein stru	7e-08
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	3e-07
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	1e-06
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	3e-06
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Length = 329

 Score = 85.1 bits (210), Expect = 2e-19
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           IS+++PA +EE  +   +D     +            E++++D GS+D T+  A     +
Sbjct: 50  ISVVLPALDEEDTIGSVIDSISPLV-------DGLVDELIVLDSGSTDDTEIRAVAAGAR 102

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT 169
                  +  +    GKGEA+ + +  SRG++++ +D+D   
Sbjct: 103 VVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLIN 144

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Length = 255

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 24/123 (19%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT-YEVLIIDDGSSDGTKRVAFDF-- 124
           +S+I+ ++N+   +  ++   L+   Q      +F+ +E+ I+DD S++ T  V   F  
Sbjct: 3   VSVIMTSYNKSDYVAKSISSILS---Q------TFSDFELFIMDDNSNEETLNVIRPFLN 53

Query: 125 ---VRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDL---EKLE 178
              VR Y  D   +            I + +  + GE +     D      ++   ++L 
Sbjct: 54  DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDD------NIYMPDRLL 107

Query: 179 SQI 181
             +
Sbjct: 108 KMV 110

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Length = 387

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S ++P+ N    + G +DE          +      ++L++D  S DGT  VA     +
Sbjct: 96  VSAVLPSRNVADTVGGIIDEI-----HALNERAPLIDQILVVDADSEDGTAGVAASHGAE 150

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT 169
              +N  +   G  HGKG+A+ + +  +RG+L+L +DAD   
Sbjct: 151 VYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRD 192

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 71.5 bits (175), Expect = 3e-14
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 35/232 (15%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S++IP +N    L   L    N   Q+   D    YEV++ DDGS +  + +    VR+
Sbjct: 95  LSIVIPTYNRAKILAITLACLCN---QKTIYD----YEVIVADDGSKENIEEI----VRE 143

Query: 128 YTVDNVRIILLGRNHGKG--EAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQIH 182
           +        +  +++G         G+  ++   + +LD D             ++S + 
Sbjct: 144 FESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCD------MAPNPLWVQSYME 197

Query: 183 A---------VGRKEYNHGDSVTV-DSTFRISDIPIAAFGSRAHLEEKALATVQYCDC-P 231
                     +G ++Y      T  D   + S I         +     +   +  D   
Sbjct: 198 LLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRI 257

Query: 232 RCFICIFLFLCFSFTFHCLVEILHLISEEVVPQ--FFDEGFPSCCYLDCWSW 281
             F         +  F          +++ + +  +FDE F      D    
Sbjct: 258 EHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFG 309

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 64.2 bits (156), Expect = 9e-12
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 28/123 (22%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTY---EVLIIDDGSSDGTKRVAFDF 124
           +S+ IPA+N    +   ++  LN   Q        T    EV I DDGS+D T R+    
Sbjct: 377 VSIYIPAYNCSKYIVRCVESALN---Q--------TITDLEVCICDDGSTDDTLRI---- 421

Query: 125 VRKYTVDNVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQ 180
           ++++  ++ R+  + + N G G A    +   RG  +  LD+D      D    + +E  
Sbjct: 422 LQEHYANHPRVRFISQKNKGIGSASNTAVRLCRGFYIGQLDSD------DFLEPDAVELC 475

Query: 181 IHA 183
           +  
Sbjct: 476 LDE 478

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +++I+  +N E  + G L+       QR        + ++I++DGS+D +K++  + ++ 
Sbjct: 4   LTIIVTYYNAEEYITGCLESIKQ---QRTQD-----FNLIIVNDGSTDQSKKLMDEAIKD 55

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           Y   N+R I L  N G   A    +        + LDAD
Sbjct: 56  YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* Length = 397

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 11/113 (9%), Positives = 29/113 (25%), Gaps = 20/113 (17%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
             ++ P  +E   +            +            ++      D T         +
Sbjct: 2   SLVVFPFKHEHPEVLLHNVRVAAAHPR---------VHEVLCIGYERDQTYEAVERAAPE 52

Query: 128 -YTVDNVRIILLGRNH------GKGEAIRKGM----LHSRGELLLMLDADGAT 169
                   + +  +        GKG+ +   +      ++ E +   DAD  +
Sbjct: 53  ISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITS 105

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Length = 240

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT-YEVLIIDDGSSDGTKRVAFDFVR 126
           +S+I+P +N E  L   +   L    Q      + +  E+++IDD S D   ++  D+  
Sbjct: 7   VSVIVPIYNVEKYLDQCVQALLA---Q------TLSDIEIILIDDESPDNCPKICDDYAA 57

Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
           +Y   N+++I   +N G G A   G+  + GE +   D+D
Sbjct: 58  QY--PNIKVIHK-KNAGLGMACNSGLDVATGEYVAFCDSD 94

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVR 126
            S+IIP  NE      +L  T++ +  R+  +     E++++DD S     K+   D++ 
Sbjct: 114 TSIIIPFHNEG---WSSLLRTVHSVLNRSPPE--LVAEIVLVDDFSDREHLKKPLEDYMA 168

Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182
            +   +VRI+   +  G       G   + G+++  LD+     V  L  L  +I 
Sbjct: 169 LF--PSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIA 222

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
            S++I   NE       L  T++ +  R+ +      E++++DD S     +   +   K
Sbjct: 31  TSVVIVFHNEAWST---LLRTVHSVINRSPRHMI--EEIVLVDDASERDFLKRPLESYVK 85

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
                V +I + +  G   A  KG   SRG+++  LDA 
Sbjct: 86  KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAH 124

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
            S++I   NE      AL  T+  + +++        E++++DD S+D         + K
Sbjct: 68  TSVVITFHNEARS---ALLRTVVSVLKKSPPHLI--KEIILVDDYSNDPEDGALLGKIEK 122

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTD--LEKLESQIH 182
                VR++   R  G   +  +G   ++ ++L  LD+    +  +  LE L  ++ 
Sbjct: 123 -----VRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSH--CECNEHWLEPLLERVA 172

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* Length = 657

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 29/209 (13%), Positives = 56/209 (26%), Gaps = 31/209 (14%)

Query: 59  SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK 118
           +   P    I++ IP FN       AL E                  V++ D G      
Sbjct: 173 TSPAPGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIG-----AVIVPDQGERKVRD 227

Query: 119 RVAFDFVRKYTVDNVRIILLGRNHG--KG--EAIRKGMLHSRGELLLMLDADGATKVTD- 173
              F          + I     N G   G    + + + ++  + +L +D D   ++   
Sbjct: 228 HPDFPAAAARLGSRLSIH-DQPNLGGSGGYSRVMYEALKNTDCQQILFMDDD--IRLEPD 284

Query: 174 -LEKL------ESQIHAVGRKEYNHGD--------SVTVDSTFRISDIPIAAFG---SRA 215
            + ++            VG +  N  +         V   S F  +  P A +    +  
Sbjct: 285 SILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEY 344

Query: 216 HLEEKALATVQYCDCPRCFICIFLFLCFS 244
            L +    +             +      
Sbjct: 345 PLNDNNSRSKLLHRRIDVDYNGWWTCMIP 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 31/151 (20%)

Query: 51  SLKQVPCP-SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAA---KDKSFTYEV 106
           +LK    P +V +  +K +  I P +         +   ++ +Q       K K +   +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 107 LIIDDGSSDGTKRV--AFDFVRKYTVDNVRIILLGRN-------------HGKGEAIRKG 151
           L++ +  +    +   AF+        + +I+L  R              H   +     
Sbjct: 248 LVLLNVQN---AKAWNAFNL-------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 152 MLHSRGELLLMLDADGATKVTDLEKLESQIH 182
           +     + LL+   D   +  DL +     +
Sbjct: 298 LTPDEVKSLLLKYLD--CRPQDLPREVLTTN 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3bcv_A	240	Putative glycosyltransferase protein; protein stru	99.96
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	99.95
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.93
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.93
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.93
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.91
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	99.91
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	99.91
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	99.9
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	99.89
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.89
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	99.88
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	99.73
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	99.69
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.67
2wvl_A	391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	99.62
2zu9_A	394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	99.53
1fo8_A	343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	99.18
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	96.91
3cu0_A	281	Galactosylgalactosylxylosylprotein 3-beta- glucuro	96.76
1v84_A	253	Galactosylgalactosylxylosylprotein 3-beta- glucuro	96.69
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	96.18
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	96.17
2d0j_A	246	Galactosylgalactosylxylosylprotein 3-beta- glucuro	96.02
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	95.87
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	95.82
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	95.17
1omz_A	293	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; ro	95.08
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	94.72
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	94.35
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	93.97
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	93.68
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	93.53
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	93.48
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	93.36
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	93.33
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	92.85
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	92.36
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	92.31
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	92.29
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	91.69
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	91.66
2c0n_A	203	A197; thermophil protein, thermophilic virus, STIV	91.62
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	91.59
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	91.4
3pnn_A	303	Conserved domain protein; structural genomics, PSI	91.37
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	90.9
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	90.67
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	90.37
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	90.32
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	90.16
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	89.89
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	89.68
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	89.66
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	89.6
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	89.47
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	89.25
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	88.18
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	87.76
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	85.47
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	84.46
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	83.94
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	83.13
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	80.74

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=99.96  E-value=1.5e-28  Score=204.87  Aligned_cols=110  Identities=24%  Similarity=0.380  Sum_probs=103.6

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      .|+||||||+||+++.|++||+|+++        |+++++|||||||||+|+|.++++++.++++  ++++++. +|.|+
T Consensus         4 ~p~vsViIp~yn~~~~l~~~l~Sl~~--------q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~--~i~~i~~-~n~G~   72 (240)
T 3bcv_A            4 IPKVSVIVPIYNVEKYLDQCVQALLA--------QTLSDIEIILIDDESPDNCPKICDDYAAQYP--NIKVIHK-KNAGL   72 (240)
T ss_dssp             CCSEEEEEEESSCTTTHHHHHHHHHT--------CSSSSEEEEEEECCCSSSHHHHHHHHHHHCS--SEEEEEC-CCCCH
T ss_pred             CCcEEEEEecCCCHHHHHHHHHHHHh--------CcCCCeEEEEEECCCCcCHHHHHHHHHhhCC--CEEEEEC-CCCCh
Confidence            57799999999999999999999998        7788999999999999999999999998887  8999985 59999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +.|+|.|+++|+||||+|+|+|+.++|++|+++++.+++.+
T Consensus        73 ~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~  113 (240)
T 3bcv_A           73 GMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYT  113 (240)
T ss_dssp             HHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998853

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=99.95  E-value=1.5e-28  Score=206.88  Aligned_cols=121  Identities=19%  Similarity=0.250  Sum_probs=111.1

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC------
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------  139 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~------  139 (283)
                      |+||||||+||+++.|.+||+|+++        |+++++|||||||||+|+|.++++++.. .+  +++++..+      
T Consensus         1 p~vSViIp~yn~~~~l~~~l~Sl~~--------q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~--~i~~i~~~~~~~~~   69 (255)
T 1qg8_A            1 PKVSVIMTSYNKSDYVAKSISSILS--------QTFSDFELFIMDDNSNEETLNVIRPFLN-DN--RVRFYQSDISGVKE   69 (255)
T ss_dssp             CCEEEEEEESSCTTTHHHHHHHHHT--------CSCCCEEEEEEECSCCHHHHHHHGGGGG-ST--TEEEEECCCCSHHH
T ss_pred             CeEEEEEEcCCCHHHHHHHHHHHHh--------ccCCceEEEEEECCCCchHHHHHHHHhh-cC--CEEEEecccccccc
Confidence            5799999999999999999999998        7888999999999999999999998866 44  89999998      


Q ss_pred             --CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceee
Q 023346          140 --RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV  197 (283)
Q Consensus       140 --~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (283)
                        +|.|++.|+|.|+++|+||||+|+|+|+.+.|++|+++++.++++++.+++++.....
T Consensus        70 ~~~n~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~  129 (255)
T 1qg8_A           70 RTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTY  129 (255)
T ss_dssp             HHSSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEE
T ss_pred             cccccCHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEE
Confidence              7999999999999999999999999999999999999999999988887777766544

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=99.93  E-value=7.9e-26  Score=206.94  Aligned_cols=118  Identities=26%  Similarity=0.286  Sum_probs=106.9

Q ss_pred             CCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcc-hHHHHHHHHHHcCCCcEEEEEc
Q 023346           63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILL  138 (283)
Q Consensus        63 ~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~-t~~~~~~~~~~~~~~~~~~~~~  138 (283)
                      ...|+||||||+||++ +.|.++|+|+++        |+++.  +|||||||||+|+ |.++++++.++++ .++++++.
T Consensus        26 ~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~--------q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~-~~v~vi~~   96 (472)
T 1xhb_A           26 DNLPTTSVVIVFHNEAWSTLLRTVHSVIN--------RSPRHMIEEIVLVDDASERDFLKRPLESYVKKLK-VPVHVIRM   96 (472)
T ss_dssp             SCCCCEEEEEEESSCCHHHHHHHHHHHHH--------SSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSS-SCEEEEEC
T ss_pred             cCCCCeEEEEEeCCCCHHHHHHHHHHHHh--------cCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCC-CcEEEEEC
Confidence            4678999999999999 999999999998        56555  6999999999995 9999999877664 36999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccc
Q 023346          139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY  189 (283)
Q Consensus       139 ~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~  189 (283)
                      ++|.|++.|+|.|+++|+||||+|+|+|+.++|++|+++++.+++++...+
T Consensus        97 ~~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v  147 (472)
T 1xhb_A           97 EQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVV  147 (472)
T ss_dssp             SSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred             CCCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEE
Confidence            999999999999999999999999999999999999999999998876643

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=99.93  E-value=1e-25  Score=212.97  Aligned_cols=179  Identities=19%  Similarity=0.224  Sum_probs=137.0

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..|.||||||+||+++.|.+||+|+++        |+++++|||||||||+|+|.++++++..+++  +++++. .+|.|
T Consensus       373 ~~~~vsiii~~yn~~~~l~~~l~s~~~--------q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~--~i~~~~-~~n~G  441 (625)
T 2z86_A          373 RVPLVSIYIPAYNCSKYIVRCVESALN--------QTITDLEVCICDDGSTDDTLRILQEHYANHP--RVRFIS-QKNKG  441 (625)
T ss_dssp             SSCSEEEEEEESSCTTTHHHHHHHHHS--------SSCCSEEEEEEEESCSSSHHHHHHHHHTTCT--TEEEEE-ECCCC
T ss_pred             cCCeEEEEEeCCCCHHHHHHHHHHHHh--------CcCCCeEEEEEECcCChhHHHHHHHHHhhCC--cEEEEe-CCCCC
Confidence            467899999999999999999999998        7888999999999999999999999887776  899997 56999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecCccccCCCceeeecccccccchhhh
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA  223 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  223 (283)
                      ++.|+|.|+++|+||||+++|+|+.+.|++|+++++.+.++++.+++++.....+.....       .........  ..
T Consensus       442 ~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~~~--~~  512 (625)
T 2z86_A          442 IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNL-------ISNGYNWPI--YS  512 (625)
T ss_dssp             HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEEEECTTSCE-------EEECCCCSS--CC
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeEEECCCCCE-------eccCccccc--CC
Confidence            999999999999999999999999999999999999999888877776655444432211       000000000  00


Q ss_pred             hcccccCCccccccccceeEeeccceeeeehhhccccccc--cccCCCCCCcccccccc
Q 023346          224 TVQYCDCPRCFICIFLFLCFSFTFHCLVEILHLISEEVVP--QFFDEGFPSCCYLDCWS  280 (283)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--ggFde~~~~~eD~d~w~  280 (283)
                      ......            .+..+      .+.+++++.+.  |||||.+.++||+|||.
T Consensus       513 ~~~~~~------------~~~~~------~~~~~~r~~~~~~ggfd~~~~~~eD~dl~~  553 (625)
T 2z86_A          513 REKLTS------------AMICH------HFRMFTARAWNLTEGFNESISNAVDYDMYL  553 (625)
T ss_dssp             HHHHTT------------SCCCC------SCEEEEHHHHTTTTCCCSSCSSCHHHHHHH
T ss_pred             HHHHhh------------cccCC------ceEEEEHHHHHHhCCCCCccCChHHHHHHH
Confidence            000000            01111      11345666777  99999999999999984

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=99.93  E-value=2.8e-26  Score=214.24  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=105.9

Q ss_pred             CCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcch-HHHHHHHHHHcCCCcEEEEEc
Q 023346           63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILL  138 (283)
Q Consensus        63 ~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~  138 (283)
                      ...|+||||||+||++ +.|.++|+|+++        |+++.  +|||||||||+|+| .++++++.++++  ++++++.
T Consensus       109 ~~~P~vSVIIp~yNe~~~~L~~~L~Sll~--------qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~--~v~vi~~  178 (570)
T 2d7i_A          109 ETLPNTSIIIPFHNEGWSSLLRTVHSVLN--------RSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP--SVRILRT  178 (570)
T ss_dssp             SSCCCEEEEEEESSCCHHHHHHHHHHHHH--------HSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST--TEEEEEC
T ss_pred             CCCCCeEEEEEECCCCHHHHHHHHHHHHh--------cCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC--eEEEEEC
Confidence            4578999999999999 999999999998        45544  59999999999999 899999988776  8999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       139 ~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      ++|.|++.|+|.|+++|+||||+|+|+|+.+.|++|+++++.+.+++..
T Consensus       179 ~~n~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~  227 (570)
T 2d7i_A          179 KKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKT  227 (570)
T ss_dssp             SSCCCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTE
T ss_pred             CCCCCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCE
Confidence            9999999999999999999999999999999999999999999987765

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=99.91  E-value=1.4e-24  Score=200.02  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=102.4

Q ss_pred             CCCceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 023346           63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG  139 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~-~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~  139 (283)
                      ...|.||||||+||++. .|.++|+|+++        |+++.  +|||||||||+|+|.+.+   .++++  ++++++.+
T Consensus        63 ~~~p~vSVIIp~yN~~~~~L~~~l~Sl~~--------q~~~~~~~EIIvVDDgS~D~t~~~~---~~~~~--~v~vi~~~  129 (501)
T 2ffu_A           63 VDLPATSVVITFHNEARSALLRTVVSVLK--------KSPPHLIKEIILVDDYSNDPEDGAL---LGKIE--KVRVLRND  129 (501)
T ss_dssp             SSCCCEEEEEEESSCCHHHHHHHHHHHHH--------HSCGGGEEEEEEEECSCSCTHHHHG---GGGBT--TEEEEECS
T ss_pred             cCCCCEEEEEEeCcCcHHHHHHHHHHHHh--------hCchhhceeEEEEECCCCchHHHHH---HhcCC--CEEEEECC
Confidence            45789999999999997 99999999998        44444  699999999999996432   34566  89999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       140 ~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      +|.|++.|+|.|+++|+||||+|+|+|+.++|++|+++++.+.+++.. ++++..
T Consensus       130 ~n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~-vv~~~~  183 (501)
T 2ffu_A          130 RREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTR-VVSPII  183 (501)
T ss_dssp             SCCHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTE-EEEEEE
T ss_pred             CCcCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCe-EEEeee
Confidence            999999999999999999999999999999999999999999987764 444443

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=99.91  E-value=1e-24  Score=210.81  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             CCCCceEEEEEeecCCCCCh-HHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchH---------------HHHHH
Q 023346           62 DPAEKYISLIIPAFNEEHRL-PGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTK---------------RVAFD  123 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l-~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~---------------~~~~~  123 (283)
                      ++..|+|||+||+|||++.+ ++||+|+++        |++++  +||+||||||+|+|.               +.+++
T Consensus       136 ~~~~P~VSViIPtyNe~~~lL~~~L~Sl~~--------q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~  207 (802)
T 4hg6_A          136 PEELPTVDILVPSYNEPADMLSVTLAAAKN--------MIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQ  207 (802)
T ss_dssp             TTTCCCEEEEEECTTCCHHHHHHHHHHHHT--------SSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEEECCCCHHHHHHHHHHHHh--------ccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHH
Confidence            45578999999999999766 899999988        55554  999999999999993               34455


Q ss_pred             HHHHcCCCcEEEEEcCCC-CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccccccccee
Q 023346          124 FVRKYTVDNVRIILLGRN-HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT  196 (283)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~-~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  196 (283)
                      +.++.   +++++..+++ .||+.|+|.|+++++||||+++|+|+.++|++|+++++.+.++++.+++.+....
T Consensus       208 ~~~~~---~v~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~  278 (802)
T 4hg6_A          208 LCREL---GVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFF  278 (802)
T ss_dssp             HHHHH---TCEEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCB
T ss_pred             HHHhc---CcEEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEE
Confidence            55554   4778877765 7899999999999999999999999999999999999999888887766654433

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=99.91  E-value=5.1e-26  Score=218.44  Aligned_cols=109  Identities=21%  Similarity=0.425  Sum_probs=0.0

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      +|+||||||+||+++.|++||+|+++        |+++++|||||||||+|+|.++++++.++++ .+++++..++|.|.
T Consensus         1 Mp~vSVIIp~yN~~~~L~~~L~Sll~--------Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~-~~i~~i~~~~n~G~   71 (729)
T 3l7i_A            1 MNKLTIIVTYYNAEEYITGCLESIKQ--------QRTQDFNLIIVNDGSTDQSKKLMDEAIKDYD-KNIRFIDLDENSGH   71 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEEcCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCCcHHHHHHHHHHhCC-CCEEEEECCCCCCH
Confidence            36799999999999999999999998        6677999999999999999999999987754 38999999889999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHH
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH  182 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~  182 (283)
                      +.|+|.|++.|+||||+|+|+|+.+.|++|+++++.+.
T Consensus        72 ~~arN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~  109 (729)
T 3l7i_A           72 AHARNIALEEVETPYFMFLDADDELASYAITFYLEKFN  109 (729)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc
Confidence            99999999999999999999999999999999999998

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=99.90  E-value=3.6e-24  Score=187.10  Aligned_cols=124  Identities=21%  Similarity=0.264  Sum_probs=103.3

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE-cCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL-LGR  140 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~-~~~  140 (283)
                      ...|+||||||+||+++.|.++|+|+++        |.++ .+|||||||||+|+|.++++++..+.. .+++++. .++
T Consensus        45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~--------q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~-~~~~~~~~~~~  115 (329)
T 3ckj_A           45 KAGRTISVVLPALDEEDTIGSVIDSISP--------LVDGLVDELIVLDSGSTDDTEIRAVAAGARVV-SREQALPEVPI  115 (329)
T ss_dssp             TTTCCEEEEEEESSCTTTHHHHHHHHGG--------GBTTTBSEEEEEECSCCSSHHHHHHHTTCEEE-EHHHHCTTSCC
T ss_pred             ccCCcEEEEEeeCCCHHHHHHHHHHHHH--------hhCCCCcEEEEEeCCCCchHHHHHHHhhhhhc-cceeeeccCCC
Confidence            3468899999999999999999999998        5554 599999999999999999988743211 0222232 567


Q ss_pred             CCCHHHHHHHHHHHcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCcccccccce
Q 023346          141 NHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDSV  195 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~  195 (283)
                      |.|++.|+|.|++.|+||||+|+|+|+. ++|++|+++++.+.++++.++++|...
T Consensus       116 n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~  171 (329)
T 3ckj_A          116 RPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYR  171 (329)
T ss_dssp             CCSHHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEec
Confidence            9999999999999999999999999999 899999999999888877776666543

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=99.89  E-value=1.4e-23  Score=198.01  Aligned_cols=129  Identities=16%  Similarity=0.142  Sum_probs=104.3

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcc--hHHHHHHHHHHcCCCcEEEEEcCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG--TKRVAFDFVRKYTVDNVRIILLGR  140 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~~~~~~~~~  140 (283)
                      +..|+||||||+||+++.|.+||+|+.+|.+.     ....+|||||||||+|+  +..+.+......+  +++++.++ 
T Consensus       177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~-----~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~--~I~vI~~~-  248 (657)
T 4fix_A          177 PGTANIAVGIPTFNRPADCVNALRELTADPLV-----DQVIGAVIVPDQGERKVRDHPDFPAAAARLGS--RLSIHDQP-  248 (657)
T ss_dssp             CSCCCEEEECCBSSCHHHHHHHHHHHTTSHHH-----HTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG--GEEEEECC-
T ss_pred             CCCCeEEEEEEecCCHHHHHHHHHHHHcCccc-----cCCCCEEEEEECcCCCccchHHHHHHHHhcCC--CEEEEECC-
Confidence            34688999999999999999999999884321     01467999999999984  3333333333444  89999998 


Q ss_pred             CCCHHHHHHHHHHHc----CCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccceeecC
Q 023346          141 NHGKGEAIRKGMLHS----RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS  199 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a----~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  199 (283)
                      |.|.++|+|.|++.|    .+|||+|+|+|+.++|++|+++++.++.+++.+++.+.....+.
T Consensus       249 N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~  311 (657)
T 4fix_A          249 NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQE  311 (657)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTS
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCC
Confidence            999999999999998    46899999999999999999999999998887776666555444

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=99.89  E-value=1.5e-22  Score=191.31  Aligned_cols=120  Identities=18%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCC-CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKS-FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN-  141 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~-~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-  141 (283)
                      ..|.||||||+||+++.|.++|+|+.+        |.+ .++|||||||||+|+|.++++++...   .+++++..+.+ 
T Consensus        91 ~~p~vsviIp~~n~~~~l~~~l~sl~~--------q~~~~~~eiivvDd~s~d~t~~~~~~~~~~---~~i~~i~~~~~~  159 (625)
T 2z86_A           91 IIDGLSIVIPTYNRAKILAITLACLCN--------QKTIYDYEVIVADDGSKENIEEIVREFESL---LNIKYVRQKDYG  159 (625)
T ss_dssp             CCCCEEEEEEESSCHHHHHHHHHHHHT--------CCCSSCEEEEEEEESCSSCHHHHHHTTTTT---SCEEEEEECCCS
T ss_pred             cCCcEEEEEecCCcHHHHHHHHHHHHh--------hccCCCeEEEEEeCCCchhHHHHHHHhhhc---CCeEEEEeCCCC
Confidence            347899999999999999999999987        533 48999999999999999999887443   26888887743 


Q ss_pred             CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      .|++.|+|.|+++++||||+|+|+|+.++|++|+++++.+.+++..+++.+..
T Consensus       160 ~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~  212 (625)
T 2z86_A          160 YQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRK  212 (625)
T ss_dssp             CCHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEE
T ss_pred             cchhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeee
Confidence            46999999999999999999999999999999999999999887766554443

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=99.88  E-value=1.7e-23  Score=185.96  Aligned_cols=125  Identities=23%  Similarity=0.321  Sum_probs=103.8

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK  144 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk  144 (283)
                      .|+||||||+|||++.|.++|+++.+++.     +....+|||||||||+|+|.++++++..+.....++++..+.|.|+
T Consensus        93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~-----~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~  167 (387)
T 3f1y_A           93 GLTVSAVLPSRNVADTVGGIIDEIHALNE-----RAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGK  167 (387)
T ss_dssp             TCCEEEEEEESSCTTTHHHHHHHHHHHHH-----HSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSH
T ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHHHHHh-----cCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCH
Confidence            57899999999999999999999987543     3345799999999999999999988743211012223345679999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCcccccccc
Q 023346          145 GEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       145 ~~a~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      +.|+|.|++.|+||||+|+|+|+. ++|++|.++++.+.++++.+++.|..
T Consensus       168 g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~  218 (387)
T 3f1y_A          168 GDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAY  218 (387)
T ss_dssp             HHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEee
Confidence            999999999999999999999999 89999999999999887777766654

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=99.73  E-value=8.4e-18  Score=141.00  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=78.5

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..+.+||| |+||+++.+++||+|+.+++..    |.+  +|||||||+|+|.                         .|
T Consensus        14 ~~~~iSII-~~yN~~~~l~~~l~sl~~sl~~----q~~--~EiIVVDn~s~d~-------------------------~g   61 (249)
T 2nxv_A           14 STLMFSVC-SLVRDQAKYDRLLESFERFGFT----PDK--AEFLAADNREGNQ-------------------------FH   61 (249)
T ss_dssp             CCCSEEEE-EEESCHHHHHHHHHHHHHTTCC----TTT--EEEEEEECTTSCS-------------------------CC
T ss_pred             CcceEEEE-EeeCCHHHHHHHHHHHHHhccC----CCc--EEEEEEECCCCCc-------------------------cc
Confidence            45679975 6799999999999988764332    232  9999999999862                         36


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc----CCcccc
Q 023346          144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV----GRKEYN  190 (283)
Q Consensus       144 k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~----~~~~~~  190 (283)
                      .+.|+|.|+++|+|||++|+|+|+.++|++|+++++.++++    ++.+++
T Consensus        62 ~a~a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~~~~~~~~vg~v  112 (249)
T 2nxv_A           62 GFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVA  112 (249)
T ss_dssp             TTTHHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhcccCCCCeeEE
Confidence            68999999999999999999999999999999999999873    665443

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=99.69  E-value=2.2e-16  Score=140.10  Aligned_cols=114  Identities=16%  Similarity=0.069  Sum_probs=84.2

Q ss_pred             EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC-C--CcEEEEEcC--C--C
Q 023346           69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-V--DNVRIILLG--R--N  141 (283)
Q Consensus        69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~--~~~~~~~~~--~--~  141 (283)
                      |+|||.+||+ .|..+++++....       ..+.+|||||||||+|+|.+++++++.+.+ .  .++.++...  .  |
T Consensus         2 slVIiP~~eE-~I~~vl~~l~~~~-------~~~~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n   73 (397)
T 2bo4_A            2 SLVVFPFKHE-HPEVLLHNVRVAA-------AHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLR   73 (397)
T ss_dssp             CEEEEECCSS-CHHHHHHHHHHHH-------HSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSS
T ss_pred             cEEEEeCCcc-CHHHHHHHHHHhc-------cCCCeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCC
Confidence            4444445553 6888888876421       134689999999999999999996655432 1  133333222  3  7


Q ss_pred             CCHHHHHHHHH----HHcCCCEEEEEeCCCC-CChhhHHHHHHHHHHcCCcccccc
Q 023346          142 HGKGEAIRKGM----LHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       142 ~gk~~a~n~g~----~~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      .||+.|++.|+    ++++||+++++|||.. .+|+++.++++.+.++  .+++.|
T Consensus        74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g--~D~V~g  127 (397)
T 2bo4_A           74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG--YGLVRH  127 (397)
T ss_dssp             SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTT--CSEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHcC--CCEEEE
Confidence            99999999999    8999999999999996 8999999999998653  334444

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.67  E-value=9.9e-17  Score=136.78  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      ..|+||||||+||+++.|.++|+|+...+.     |.+.++|||||||++ |.                        ..+
T Consensus        63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~-----q~~~~~EIiVVdds~-d~------------------------~f~  112 (287)
T 2fy7_A           63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQ-----RQQLDYGIYVINQAG-DT------------------------IFN  112 (287)
T ss_dssp             CSCEEEEEEEESSCHHHHHHHHHHHHHHHH-----HTTCEEEEEEEEECS-SS------------------------CCC
T ss_pred             cCCcEEEEEeeCCCHHHHHHHHHHHHHHHH-----HhcCCceEEEEEeCC-CC------------------------ccc
Confidence            468899999999999999999999984332     456789999999943 31                        236


Q ss_pred             HHHHHHHHH----HHcCCCEEEEEeCCCCCChhh
Q 023346          144 KGEAIRKGM----LHSRGELLLMLDADGATKVTD  173 (283)
Q Consensus       144 k~~a~n~g~----~~a~~d~i~~~D~D~~~~~~~  173 (283)
                      ++.++|.|+    +.|+||||+|+|+|+.+.+++
T Consensus       113 ~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~  146 (287)
T 2fy7_A          113 RAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH  146 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred             hhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence            889999999    899999999999999999995

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*

Probab=99.62  E-value=2e-15  Score=128.71  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch---HHHHHHHHHH-cCCCcEEEEEcCC
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT---KRVAFDFVRK-YTVDNVRIILLGR  140 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t---~~~~~~~~~~-~~~~~~~~~~~~~  140 (283)
                      ..++|||||+|||+.   .+|+++++        |.+.++|||+|||||+|.|   .++++++.+. ..  ++.+++.. 
T Consensus        52 ~~klSIVVPvYNEe~---~lLesVl~--------qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~~~~~--ri~viHQk-  117 (391)
T 2wvl_A           52 LEQTAIVVPTRNERL---KLLEGVLS--------GIPHEALILVASNSSPDRFQMERDLLEEFAHLTER--PALIFHQK-  117 (391)
T ss_dssp             HTTEEEEEEESSCCH---HHHHHHHH--------TSCTTSEEEEEECCCHHHHHHHHHHHHHHHHHTTC--CEEEEETT-
T ss_pred             HhceEEEEeccCcHH---HHHHHHHh--------cCCCCceEEEEECCCCCChHhHHHHHHHHHhhccc--ceEEEecc-
Confidence            456999999999996   57999998        6777999999999999999   5788898874 44  78888753 


Q ss_pred             CCCHHHHH-----------------------HHHHHHc---CCCEEEEEeCCCCCChhhHHHH
Q 023346          141 NHGKGEAI-----------------------RKGMLHS---RGELLLMLDADGATKVTDLEKL  177 (283)
Q Consensus       141 ~~gk~~a~-----------------------n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~  177 (283)
                      |.|.+.|+                       -.|+..|   .++||.|+|+|+.++.+..+.+
T Consensus       118 n~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyv  180 (391)
T 2wvl_A          118 DPALAEALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYV  180 (391)
T ss_dssp             CHHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHH
T ss_pred             ChHHHHHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHH
Confidence            55555555                       4578777   7999999999999976665544

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*

Probab=99.53  E-value=5.3e-14  Score=123.16  Aligned_cols=104  Identities=20%  Similarity=0.329  Sum_probs=81.7

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcch------HHHHHHHHHHcCCCcEEEEEcCC
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT------KRVAFDFVRKYTVDNVRIILLGR  140 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t------~~~~~~~~~~~~~~~~~~~~~~~  140 (283)
                      ++|||||+|||+..   .+..+++++        ...+|||||||||+|+|      .++++++....+ ....++....
T Consensus        52 ~iSVVIP~yNEE~~---lI~~vL~~i--------~~~~eIIvVDDgSrD~tD~~~~~~~~l~~~~~~~~-~~~~Vl~~~~  119 (394)
T 2zu9_A           52 KMAVIVPMKNEKLH---LVDGVLKAI--------PHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTH-SKIIMIHQKD  119 (394)
T ss_dssp             TEEEEEEESSCCHH---HHHHHHHHS--------CTTSCEEEEECCCCSSSCHHHHHHHHHHHHHHHHC-CCEEEEETTC
T ss_pred             CEEEEEecCcccHH---HHHHHHHcC--------CCCcEEEEEECcCcccccchhhHHHHHHHHhhccc-cceEEEecCC
Confidence            59999999999953   366666522        23689999999997777      677877766544 3566666543


Q ss_pred             ----------------------CCCHHHHHHHHHHHc---CCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          141 ----------------------NHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       141 ----------------------~~gk~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                                            +.||+.|+-.|+.+|   +||+|+++|+|. ..|..+.++++.+..
T Consensus       120 p~v~~~~~~~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~a  186 (394)
T 2zu9_A          120 PGLAKAFKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN-YIPGAVNEYVKDYAA  186 (394)
T ss_dssp             HHHHHHHHHHTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB-SCHHHHHHHHHHHHH
T ss_pred             cchhHHhhhccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhhh
Confidence                                  259999999999999   999999999999 678888888877664

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*

Probab=99.18  E-value=3.1e-11  Score=104.79  Aligned_cols=110  Identities=14%  Similarity=0.113  Sum_probs=82.7

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE---------
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL---------  137 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~---------  137 (283)
                      .++|+|++||+.+ +.++|++++++.      ....+.+|||.|||+.++|.++++++..     .+..+.         
T Consensus         3 ~~pViI~~yNRp~-l~~~L~sL~~~~------p~~~~~~iivsdDgs~~~~~~vi~~~~~-----~I~~~~~~d~~~~~~   70 (343)
T 1fo8_A            3 VIPILVIACDRST-VRRCLDKLLHYR------PSAELFPIIVSQDCGHEETAQVIASYGS-----AVTHIRQPDLSNIAV   70 (343)
T ss_dssp             CCCEEEEESSCTT-HHHHHHHHHHHC------SCTTTSCEEEEECTTCHHHHHHHHTTGG-----GSEEEECSCCCCCCC
T ss_pred             cccEEEEECCcHH-HHHHHHHHHhcC------CCcCCcEEEEEECCCCHHHHHHHHHcCC-----ceEEEEcCCcccccc
Confidence            4789999999998 999999999821      1244689999999999999999887642     233322         


Q ss_pred             cCCCCCHH----------HHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHH---HHcCCcc
Q 023346          138 LGRNHGKG----------EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQI---HAVGRKE  188 (283)
Q Consensus       138 ~~~~~gk~----------~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~---~~~~~~~  188 (283)
                      .++|.|..          .++|.++..+++++++++|+|+.+.|++++-+.+.+   +.++...
T Consensus        71 ~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~  134 (343)
T 1fo8_A           71 QPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLW  134 (343)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEE
T ss_pred             chhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEE
Confidence            23455532          577777777799999999999999999986666655   4444443

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=96.91  E-value=0.0031  Score=52.30  Aligned_cols=78  Identities=12%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH  142 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~  142 (283)
                      .+.-+|+||||-+|+++.|...|..+...+..|     ...+.|+||+...                         ....
T Consensus        48 ~~~~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ-----~l~y~I~VieQ~~-------------------------~~~F   97 (287)
T 3lw6_A           48 ASVHKMALLVPFRDRFEELLQFVPHMTAFLKRQ-----GVAHHIFVLNQVD-------------------------RFRF   97 (287)
T ss_dssp             CCCCEEEEEEEESSCHHHHHHHHHHHHHHHHHT-----TCEEEEEEEEECS-------------------------SSCC
T ss_pred             CCcceEEEEEEeCCHHHHHHHHHHHHHHHHHHc-----CCceEEEEEecCC-------------------------CCcc
Confidence            345679999999999999888888887776653     4468888887521                         1357


Q ss_pred             CHHHHHHHHHHHcC--CCEEEEEeCCCCCC
Q 023346          143 GKGEAIRKGMLHSR--GELLLMLDADGATK  170 (283)
Q Consensus       143 gk~~a~n~g~~~a~--~d~i~~~D~D~~~~  170 (283)
                      +++..+|.|+..|.  .|+++|-|.|..+.
T Consensus        98 NRa~LlNvGf~ea~~~~d~~ifHDVDLlP~  127 (287)
T 3lw6_A           98 NRASLINVGFQFASDVYDYIAMHDVDLLPL  127 (287)
T ss_dssp             CHHHHHHHHHHHSCTTCCEEEEECTTEEEC
T ss_pred             chhheecccHHHHhccCCEEEEeccccccc
Confidence            89999999999885  69999999999885

>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*

Probab=96.76  E-value=0.011  Score=48.81  Aligned_cols=102  Identities=13%  Similarity=0.082  Sum_probs=66.2

Q ss_pred             CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEc-
Q 023346           62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILL-  138 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~-  138 (283)
                      ....|.|-||.|+|.+.....+ |..+...+..      -+++.-|||+|+.  ++.+.+++++-       ++.+.+. 
T Consensus        17 ~~~~p~IivVTPTy~R~~Q~a~-LtRLa~TL~~------Vp~L~WIVVEd~~~~t~~va~lL~rs-------Gl~y~HL~   82 (281)
T 3cu0_A           17 RGSHMTIYVVTPTYARLVQKAE-LVRLSQTLSL------VPRLHWLLVEDAEGPTPLVSGLLAAS-------GLLFTHLV   82 (281)
T ss_dssp             ----CEEEEEEEECCSTTHHHH-HHHHHHHHTT------SSSEEEEEEESSSSCCHHHHHHHHHH-------CSEEEEEE
T ss_pred             CCCCCeEEEEeCCCCCcchhHH-HHHHHHHHhc------CCceEEEEEcCCCCCCHHHHHHHHHc-------CCceEEec
Confidence            3467889999999998665443 4555544432      2389999999963  56677777765       2333322 


Q ss_pred             -CCCCC--------------HHHHHHHHHHHcC-----------------CCEEEEEeCCCCCChhhHHHH
Q 023346          139 -GRNHG--------------KGEAIRKGMLHSR-----------------GELLLMLDADGATKVTDLEKL  177 (283)
Q Consensus       139 -~~~~g--------------k~~a~n~g~~~a~-----------------~d~i~~~D~D~~~~~~~l~~~  177 (283)
                       +.+.+              -...+|.|++..+                 .-+|.|.|+|...+-..+++|
T Consensus        83 ~~~p~~~~~~~~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdem  153 (281)
T 3cu0_A           83 VLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  153 (281)
T ss_dssp             CCCC-----------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             cCCCccccccccccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHh
Confidence             21111              1467999998776                 247899999999988887774

>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*

Probab=96.69  E-value=0.011  Score=48.22  Aligned_cols=100  Identities=16%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEc--CC
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILL--GR  140 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~--~~  140 (283)
                      .|.|-||.|+|.+.....+ |..+...+..      -+++.-|||+|+.  ++.+.+++++-       ++.+.+.  +.
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~------Vp~L~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~   67 (253)
T 1v84_A            2 LPTIHVVTPTYSRPVQKAE-LTRMANTLLH------VPNLHWLVVEDAPRRTPLTARLLRDT-------GLNYTHLHVET   67 (253)
T ss_dssp             CCEEEEEEEECCSTTHHHH-HHHHHHHHTT------SSSEEEEEEESSSSCCHHHHHHHHHH-------CCEEEEEECCC
T ss_pred             CCEEEEEeCCCCccchhHH-HHHHhhhhcc------CCceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeecCC
Confidence            4779999999998655443 5555554432      3489999999964  57777887765       3333332  11


Q ss_pred             --C------------CCHHHHHHHHHHHcC---------CCEEEEEeCCCCCChhhHHHHH
Q 023346          141 --N------------HGKGEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKLE  178 (283)
Q Consensus       141 --~------------~gk~~a~n~g~~~a~---------~d~i~~~D~D~~~~~~~l~~~~  178 (283)
                        +            ..-...+|.|++..+         .-+|.|.|+|...+-+.+++|-
T Consensus        68 p~~~~~~~~~~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR  128 (253)
T 1v84_A           68 PRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMR  128 (253)
T ss_dssp             CHHHHCC-------CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHH
T ss_pred             CccccccccccCccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHh
Confidence              0            012467899997754         3588999999999988887753

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=96.18  E-value=0.064  Score=44.51  Aligned_cols=105  Identities=12%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             CceEEEEEeecCCCCChH----------HHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEE
Q 023346           65 EKYISLIIPAFNEEHRLP----------GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVR  134 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~----------~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~  134 (283)
                      .+++.+|||+......++          -.|+..++.+..     .. --+|+|+-|  ++.    ++++..++   +++
T Consensus        16 ~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~-----~~-i~~IvV~t~--~~~----i~~~~~~~---g~~   80 (264)
T 3k8d_A           16 HMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARE-----SG-AERIIVATD--HED----VARAVEAA---GGE   80 (264)
T ss_dssp             --CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHH-----TT-CSEEEEEES--CHH----HHHHHHHT---TCE
T ss_pred             CCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHh-----CC-CCEEEEECC--HHH----HHHHHHHc---CCE
Confidence            345788888887776665          134444444332     12 357888764  222    23333333   355


Q ss_pred             EEE--cCCCCCHHHHHHHHHHHc---CCCEEEEEeCCCC-CChhhHHHHHHHHHHcC
Q 023346          135 IIL--LGRNHGKGEAIRKGMLHS---RGELLLMLDADGA-TKVTDLEKLESQIHAVG  185 (283)
Q Consensus       135 ~~~--~~~~~gk~~a~n~g~~~a---~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~  185 (283)
                      ++.  .....|.+. +..+++..   ..|+++++++|.. +.++.++++++.+.+..
T Consensus        81 v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~  136 (264)
T 3k8d_A           81 VCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ  136 (264)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSS
T ss_pred             EEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            554  333455554 55555554   5799999999994 58999999999997543

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=96.17  E-value=0.11  Score=42.51  Aligned_cols=72  Identities=10%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE--cCCCCCHHHHHHHHHHHc---CCCEEEEEeCCC-CCChhhHHHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL--LGRNHGKGEAIRKGMLHS---RGELLLMLDADG-ATKVTDLEKL  177 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~--~~~~~gk~~a~n~g~~~a---~~d~i~~~D~D~-~~~~~~l~~~  177 (283)
                      -+|+|+-+  ++.    ++++..++   +++++.  .+...|.+. ...+++..   ..|.++++++|. .+.++.++++
T Consensus        43 ~~ivVv~~--~~~----i~~~~~~~---g~~v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l  112 (252)
T 3oam_A           43 DRVIIATD--DER----VEQAVQAF---GGVVCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQV  112 (252)
T ss_dssp             SEEEEEES--CHH----HHHHHHHT---TCEEEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHH
T ss_pred             CeEEEECC--HHH----HHHHHHHc---CCEEEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHH
Confidence            47888764  222    33333333   355543  333466665 34455554   579999999999 5689999999


Q ss_pred             HHHHHHcC
Q 023346          178 ESQIHAVG  185 (283)
Q Consensus       178 ~~~~~~~~  185 (283)
                      ++.+.+..
T Consensus       113 ~~~~~~~~  120 (252)
T 3oam_A          113 ADNLAACS  120 (252)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhcC
Confidence            99997753

>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}

Probab=96.02  E-value=0.029  Score=45.63  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC--cchHHHHHHHHHHcCCCcEEEEEcC--C
Q 023346           65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS--DGTKRVAFDFVRKYTVDNVRIILLG--R  140 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~--~  140 (283)
                      .|.|-||.|+|.+.....+ |..+...+..      -+++.-|||+|+..  +.+.+++++-.-     ..+.+..+  .
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~------Vp~l~WIVVEd~~~~~~~v~~lL~~sgl-----~y~HL~~~~~~   69 (246)
T 2d0j_A            2 LPTIYAITPTYSRPVQKAE-LTRLANTFRQ------VAQLHWILVEDAAARSELVSRFLARAGL-----PSTHLHVPTPR   69 (246)
T ss_dssp             CCCEEEEEEECCSTTHHHH-HHHHHHHHTT------STTEEEEEEESSSSCCHHHHHHHHHSCS-----CEEEEECCCCC
T ss_pred             CCEEEEEeCCCCccchhHH-HHHHHHHHhc------CCceEEEEEcCCCCCCHHHHHHHHHcCC-----ceEEEecCCcc
Confidence            4678999999998655443 5555554432      23589999999753  234555554311     22222222  1


Q ss_pred             CC------CHHHHHHHHHHHcC---------CCEEEEEeCCCCCChhhHHHH
Q 023346          141 NH------GKGEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKL  177 (283)
Q Consensus       141 ~~------gk~~a~n~g~~~a~---------~d~i~~~D~D~~~~~~~l~~~  177 (283)
                      +.      .-...+|.|++..+         .-+|.|.|+|...+-+.++++
T Consensus        70 ~~~~~~~prg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~em  121 (246)
T 2d0j_A           70 RYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEM  121 (246)
T ss_dssp             C----CCCCCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHH
T ss_pred             ccCCCCCcchHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHH
Confidence            11      12378899997642         368899999999998888774

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=95.87  E-value=0.13  Score=42.33  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=60.0

Q ss_pred             eEEEEEeecCCCCChH----------HHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEE
Q 023346           67 YISLIIPAFNEEHRLP----------GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII  136 (283)
Q Consensus        67 ~vsviip~~ne~~~l~----------~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~  136 (283)
                      ++.+|||+......++          -.|+.+++.+..     . .--+|+|+-|  ++.    ++++..++   +++++
T Consensus         9 ~~~aIIlA~G~stRl~~K~L~~i~GkPli~~~l~~l~~-----~-~i~~VvVvt~--~~~----i~~~~~~~---g~~v~   73 (256)
T 3tqd_A            9 EFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAIK-----S-GAEEVVIATD--DKR----IRQVAEDF---GAVVC   73 (256)
T ss_dssp             CCEEEEECCCC---CTTGGGCEETTEEHHHHHHHHHHH-----T-TCSEEEEEES--CHH----HHHHHHHT---TCEEE
T ss_pred             CceEEEEcCCCCCCCCCCCeeeECCchHHHHHHHHHHh-----C-CCCEEEEECC--HHH----HHHHHHHc---CCeEE
Confidence            4666677666554332          133444443332     1 1347887764  222    33333333   35554


Q ss_pred             Ec--CCCCCHHHHHHHHHHHc---CCCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          137 LL--GRNHGKGEAIRKGMLHS---RGELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       137 ~~--~~~~gk~~a~n~g~~~a---~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      ..  +...|.+. +..|++..   ..|+++++++|. .++++.++++++.+.++++
T Consensus        74 ~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~  128 (256)
T 3tqd_A           74 MTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDN  128 (256)
T ss_dssp             ECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC-
T ss_pred             EeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCC
Confidence            42  33456554 56677765   579999999999 5589999999999987544

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=95.82  E-value=0.17  Score=40.66  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-----CCCCHHHHHHHHHHHc-CCCEEEEEeCCCCC-ChhhHHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-----RNHGKGEAIRKGMLHS-RGELLLMLDADGAT-KVTDLEK  176 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-----~~~gk~~a~n~g~~~a-~~d~i~~~D~D~~~-~~~~l~~  176 (283)
                      -+|+|+-+  .+..    +++..++   ++.++..+     ...|...++..|++.. ..|+++++++|..+ +++.+++
T Consensus        45 ~~ivv~~~--~~~i----~~~~~~~---g~~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~  115 (229)
T 1qwj_A           45 QSVWVSTD--HDEI----ENVAKQF---GAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQK  115 (229)
T ss_dssp             SEEEEEES--CHHH----HHHHHHT---TCEEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHH
T ss_pred             CEEEEECC--hHHH----HHHHHHc---CCEEEeChhhhcCCCCcHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHH
Confidence            47777764  2222    2333333   35666554     2345556777888876 57999999999864 8999999


Q ss_pred             HHHHHHHcCC
Q 023346          177 LESQIHAVGR  186 (283)
Q Consensus       177 ~~~~~~~~~~  186 (283)
                      +++.+.+.+.
T Consensus       116 l~~~~~~~~~  125 (229)
T 1qwj_A          116 VAEMIREEGY  125 (229)
T ss_dssp             HHHHHHSSCC
T ss_pred             HHHHHHhCCC
Confidence            9998876543

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=95.17  E-value=0.42  Score=38.56  Aligned_cols=71  Identities=17%  Similarity=0.259  Sum_probs=47.6

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHHHcCCCEEEEEeCCCC-CChhhHHHHHHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQ  180 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~~a~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~~~~~  180 (283)
                      -+|+|+-+.  +.    +.++..++   +++++..+  ...|.+.+. .|++....+.++++++|.. +.++.++++++.
T Consensus        44 ~~ivvv~~~--~~----i~~~~~~~---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~  113 (245)
T 1h7e_A           44 AEVWVATDD--PR----VEQAVQAF---GGKAIMTRNDHESGTDRLV-EVMHKVEADIYINLQGDEPMIRPRDVETLLQG  113 (245)
T ss_dssp             CEEEEEESC--HH----HHHHHHHT---TCEEEECCSCCSSHHHHHH-HHHHHSCCSEEEECCTTCTTCCHHHHHHHHHH
T ss_pred             CeEEEECCc--HH----HHHHHHHc---CCeEEeCCCccCCcHHHHH-HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHH
Confidence            478887652  22    23333333   46677653  234555544 5666667899999999996 489999999998


Q ss_pred             HHHc
Q 023346          181 IHAV  184 (283)
Q Consensus       181 ~~~~  184 (283)
                      +.+.
T Consensus       114 ~~~~  117 (245)
T 1h7e_A          114 MRDD  117 (245)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8776

>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*

Probab=95.08  E-value=0.018  Score=48.23  Aligned_cols=117  Identities=14%  Similarity=0.018  Sum_probs=73.7

Q ss_pred             CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEEcCCC
Q 023346           63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRN  141 (283)
Q Consensus        63 ~~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~  141 (283)
                      .+...+||+|-+|++.+.|.+.|+.+.         ....--||+||=++...... .....+.. . ...++++..+.|
T Consensus        25 ~~~~~FTvvi~ty~R~~~L~~lv~~~~---------~~~~v~~IvVvWn~~~~~pp~~~~~~~~~-~-~vpv~v~~~~~n   93 (293)
T 1omz_A           25 SALDSFTLIMQTYNRTDLLLRLLNHYQ---------AVPSLHKVIVVWNNVGEKGPEELWNSLGP-H-PIPVIFKPQTAN   93 (293)
T ss_dssp             -CTTCEEEEEEESSCHHHHHHHHHHHT---------TSTTEEEEEEEECCTTCCCTHHHHHHTCC-C-SSCEEEEECSSC
T ss_pred             CCCCceEEEEEeecccHHHHHHHHHHh---------cCCCCCeEEEEeCCCCCCCChhhccccCC-C-CccEEEEeCCCC
Confidence            344569999999997544444433322         23345688888776543333 22322211 0 135888877654


Q ss_pred             CCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccc
Q 023346          142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG  192 (283)
Q Consensus       142 ~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~  192 (283)
                      .  -.++=.-....+++-|+.+|+|..+..+.|+...+.-++.|+..+++.
T Consensus        94 s--LnnRF~p~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~  142 (293)
T 1omz_A           94 K--MRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV  142 (293)
T ss_dssp             C--GGGGGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred             c--hhhccCCCccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence            2  111112234568999999999999999999999999999888765444

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=94.72  E-value=0.16  Score=40.77  Aligned_cols=72  Identities=8%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-----CCCCHHHHHHHHHHHcC--CCEEEEEeCCCC-CChhhHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-----RNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLE  175 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-----~~~gk~~a~n~g~~~a~--~d~i~~~D~D~~-~~~~~l~  175 (283)
                      -+|+|+-+.  +..    +++..++   ++.++..+     ...|...++..|++...  .|.++++++|.. +.++.++
T Consensus        46 ~~ivvv~~~--~~i----~~~~~~~---~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~  116 (228)
T 1ezi_A           46 DRIIVSTDG--GLI----AEEAKNF---GVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIR  116 (228)
T ss_dssp             SEEEEEESC--HHH----HHHHHHT---TCEEEECCC------CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHH
T ss_pred             CEEEEECCC--HHH----HHHHHHc---CCEEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHH
Confidence            478887752  222    2333333   35555544     23456778888888763  589999999985 5889999


Q ss_pred             HHHHHHHHc
Q 023346          176 KLESQIHAV  184 (283)
Q Consensus       176 ~~~~~~~~~  184 (283)
                      ++++.+.+.
T Consensus       117 ~l~~~~~~~  125 (228)
T 1ezi_A          117 EAFSLFDEK  125 (228)
T ss_dssp             HHHTTCCTT
T ss_pred             HHHHHHHhc
Confidence            998876543

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=94.35  E-value=0.85  Score=37.36  Aligned_cols=74  Identities=8%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE-cC-CCCCHHHHHHHHHHHc---CCCEEEEEeCCC-CCChhhHHH
Q 023346          103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL-LG-RNHGKGEAIRKGMLHS---RGELLLMLDADG-ATKVTDLEK  176 (283)
Q Consensus       103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~-~~-~~~gk~~a~n~g~~~a---~~d~i~~~D~D~-~~~~~~l~~  176 (283)
                      --+|+|+-|.  +.    +.++..++   +++++. .+ ...|. .++..|++..   ..|+++++++|. .++++.+++
T Consensus        42 ~~~vvVvt~~--~~----i~~~~~~~---g~~v~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~  111 (253)
T 4fcu_A           42 FDDLCVATDD--ER----IAEICRAE---GVDVVLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQ  111 (253)
T ss_dssp             CCEEEEEESC--HH----HHHHHHTT---TCCEEECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHH
T ss_pred             CCEEEEECCH--HH----HHHHHHHc---CCeEEEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHH
Confidence            4578887652  22    23333333   344443 22 23444 3566677665   359999999999 558999999


Q ss_pred             HHHHHHHcCC
Q 023346          177 LESQIHAVGR  186 (283)
Q Consensus       177 ~~~~~~~~~~  186 (283)
                      +++.+.+.+.
T Consensus       112 li~~~~~~~~  121 (253)
T 4fcu_A          112 VAKLLVDKPN  121 (253)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHhCCC
Confidence            9999987653

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=93.97  E-value=1.1  Score=35.55  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc-------CCCEEEEEeCCCC-CChhhHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS-------RGELLLMLDADGA-TKVTDLE  175 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a-------~~d~i~~~D~D~~-~~~~~l~  175 (283)
                      -+|+||-+...+...+ +.+    +....+.++  ....|...++-.|++..       ..+.++++++|.. ++++.++
T Consensus        51 ~~ivvv~~~~~~~~~~-~~~----~~~~~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~  123 (231)
T 1vgw_A           51 DLTVVVVSPEDTFADK-VQT----AFPQVRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALA  123 (231)
T ss_dssp             CEEEEECCTTCSTHHH-HHH----HCTTSEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHH
T ss_pred             CeEEEEECccHHHHHH-HHh----cCCCceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHH
Confidence            4777776543333333 322    211246554  33568888888888765       4699999999985 5889999


Q ss_pred             HHHHHHHHcC
Q 023346          176 KLESQIHAVG  185 (283)
Q Consensus       176 ~~~~~~~~~~  185 (283)
                      ++++.+.+.+
T Consensus       124 ~l~~~~~~~~  133 (231)
T 1vgw_A          124 RLIEQAGNAA  133 (231)
T ss_dssp             HHHHHHTTCT
T ss_pred             HHHHHHhhcC
Confidence            9999876543

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=93.68  E-value=0.13  Score=40.08  Aligned_cols=87  Identities=10%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHHc
Q 023346           77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHS  155 (283)
Q Consensus        77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~a  155 (283)
                      ....+..+++.+.+          ..--+|+||-+...    +.++++....   +++++..+ ...|...++..|++..
T Consensus        30 g~pll~~~l~~l~~----------~~~~~i~vv~~~~~----~~~~~~~~~~---~~~~~~~~~~~~g~~~~i~~al~~~   92 (197)
T 2wee_A           30 DTTVLGATLDVARQ----------AGFDQLILTLGGAA----SAVRAAMALD---GTDVVVVEDVERGCAASLRVALARV   92 (197)
T ss_dssp             TEEHHHHHHHHHHH----------TTCSEEEEEECTTH----HHHHHHSCCT---TSEEEECC----CCHHHHHHHHTTS
T ss_pred             CccHHHHHHHHHHh----------cCCCcEEEEeCCCH----HHHHHHhccC---CCEEEECCCcccCHHHHHHHHHHHh
Confidence            34455555555544          11247777764321    2233332222   46666654 2357888999999887


Q ss_pred             --CCCEEEEEeCCC-CCChhhHHHHHHH
Q 023346          156 --RGELLLMLDADG-ATKVTDLEKLESQ  180 (283)
Q Consensus       156 --~~d~i~~~D~D~-~~~~~~l~~~~~~  180 (283)
                        ..+.++++++|. .++++.++++++.
T Consensus        93 ~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (197)
T 2wee_A           93 HPRATGIVLMLGDQPQVAPATLRRIIDV  120 (197)
T ss_dssp             CTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence              468999999999 4689999999987

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=93.53  E-value=0.78  Score=36.62  Aligned_cols=44  Identities=9%  Similarity=0.096  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346          141 NHGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~  185 (283)
                      ..|.+.+. .|++....|+++++++|. .+++..++++++.+.+.+
T Consensus        71 ~~g~~~~~-~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~  115 (234)
T 2y6p_A           71 PSGSDRVL-YVVRDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGE  115 (234)
T ss_dssp             CSHHHHHH-HHHTTCCCSEEEECCTTCCCCCHHHHHHHHHHHHHTC
T ss_pred             ccchHHHH-HHHHhCCCCEEEEecCCcCcCCHHHHHHHHHHHHhCC
Confidence            45666666 477777789999999999 778899999999887654

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=93.48  E-value=0.21  Score=38.88  Aligned_cols=70  Identities=11%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHHc--CCCEEEEEeCCCCC-ChhhHHHHHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHS--RGELLLMLDADGAT-KVTDLEKLES  179 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~a--~~d~i~~~D~D~~~-~~~~l~~~~~  179 (283)
                      -+|+|+.+...    +.++++...+   +++++..+ ...|...++..|++..  ..++++++++|..+ +++.++++++
T Consensus        47 ~~i~vv~~~~~----~~~~~~~~~~---~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~  119 (199)
T 2waw_A           47 DQLIVTLGGAA----DEVLEKVELD---GLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIA  119 (199)
T ss_dssp             SEEEEEECTTH----HHHHHHSCCT---TSEEEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             CcEEEEeCCCH----HHHHHHhccC---CCEEEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHh
Confidence            47777765322    2233332222   45666543 2457778888899887  57999999999975 8999999998


Q ss_pred             H
Q 023346          180 Q  180 (283)
Q Consensus       180 ~  180 (283)
                      .
T Consensus       120 ~  120 (199)
T 2waw_A          120 G  120 (199)
T ss_dssp             H
T ss_pred             h
Confidence            7

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=93.36  E-value=1.3  Score=35.11  Aligned_cols=76  Identities=16%  Similarity=0.276  Sum_probs=49.8

Q ss_pred             eEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEEEeCCC-CCChhhHHHHHHH
Q 023346          104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR--GELLLMLDADG-ATKVTDLEKLESQ  180 (283)
Q Consensus       104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~--~d~i~~~D~D~-~~~~~~l~~~~~~  180 (283)
                      -+|+|+-+..   ..++.+.+...+. .++.++.  ...|...++..|++...  .++++++|+|. .+.++.++++++.
T Consensus        49 ~~ivvv~~~~---~~~~~~~~~~~~~-~~v~~~~--~~~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~  122 (228)
T 2yc3_A           49 KEIVVVCDPF---FRDIFEEYEESID-VDLSFAI--PGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKD  122 (228)
T ss_dssp             EEEEEECCGG---GHHHHHTTTTTSS-SEEEEEC--CCSSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             CeEEEEEChH---HHHHHHHHHHhCC-CcEEEEC--CCCCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHH
Confidence            4777775422   2233333332222 2355553  24688888888988765  48999999996 5689999999998


Q ss_pred             HHHcC
Q 023346          181 IHAVG  185 (283)
Q Consensus       181 ~~~~~  185 (283)
                      +.+.+
T Consensus       123 ~~~~~  127 (228)
T 2yc3_A          123 GSAVG  127 (228)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            87654

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=93.33  E-value=0.4  Score=38.03  Aligned_cols=86  Identities=15%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH  154 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~-~~~gk~~a~n~g~~~  154 (283)
                      +....|...++.+..            . +|+||-+.  +   +..+.+...+   +++++..+ ...|...++..|++.
T Consensus        24 ~G~pli~~~~~~l~~------------~-~vvvv~~~--~---~~~~~~~~~~---~~~~v~d~~~~~G~~~si~~gl~~   82 (208)
T 3ngw_A           24 CGKKLIEWVLEKYSP------------F-QTVFVCRD--E---KQAEKLSSRY---EAEFIWDLHKGVGSIAGIHAALRH   82 (208)
T ss_dssp             TTEEHHHHHHHHHTT------------S-EEEEECSS--H---HHHHHHHTTS---CSCEECCTTCCCSHHHHHHHHHHH
T ss_pred             CCeeHHHHHHHHhcC------------C-CEEEEECC--H---HHHHHHHHhc---CCeEEecCCCCCChHHHHHHHHHH
Confidence            555556666665543            2 88888642  1   2233333323   35566543 245788999999999


Q ss_pred             cCCCEEEEEeCCCCC-ChhhHHHHHHHHHHc
Q 023346          155 SRGELLLMLDADGAT-KVTDLEKLESQIHAV  184 (283)
Q Consensus       155 a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~  184 (283)
                      + .+++ ++++|..+ +++.++++++.+.+.
T Consensus        83 ~-~~~v-v~~~D~P~i~~~~i~~l~~~~~~~  111 (208)
T 3ngw_A           83 F-GSCV-VAAIDMPFVKPEVLEHLYKEGEKA  111 (208)
T ss_dssp             H-SSEE-EEETTCTTCCHHHHHHHHHHHHHH
T ss_pred             c-CCCE-EEECCccCCCHHHHHHHHHHhhcC
Confidence            8 9999 99999955 899999999988753

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=92.85  E-value=0.14  Score=42.60  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChh----hHHHHHHHHHHcCC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT----DLEKLESQIHAVGR  186 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~----~l~~~~~~~~~~~~  186 (283)
                      .+.++..+...|.+.++..|+.....+.++++.+|..+.++    .+.++++.+.+...
T Consensus        96 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~  154 (281)
T 3juk_A           96 CFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC  154 (281)
T ss_dssp             EEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS
T ss_pred             cEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC
Confidence            56667777778999999999988877889999999988888    89999998876554

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=92.36  E-value=0.74  Score=41.66  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      ++|..|.. .|.-.|+.+.+          ...-||+||-..-.+.-.+.+.+....+. .+++++..++..|-+.|+..
T Consensus        34 l~pv~gkp-~i~~~l~~~~~----------~g~~~i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~~~q~~~lGTa~Av~~  101 (501)
T 3st8_A           34 LHTLAGRS-MLSHVLHAIAK----------LAPQRLIVVLGHDHQRIAPLVGELADTLG-RTIDVALQDRPLGTGHAVLC  101 (501)
T ss_dssp             GCEETTEE-HHHHHHHHHHH----------HCCSEEEEEECTTHHHHHHHHHHHHHHHT-SCCEEEECSSCCCHHHHHHH
T ss_pred             HeEECChh-HHHHHHHHHHh----------CCCCEEEEEeCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCCcHHHHHH
Confidence            56666653 44444444443          22457888876544555555555444443 47888888888999999999


Q ss_pred             HHHHcCC---CEEEEEeCCC-CCChhhHHHHHHHHHHcCCcc
Q 023346          151 GMLHSRG---ELLLMLDADG-ATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       151 g~~~a~~---d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~~~  188 (283)
                      ++.....   +.++++.+|+ .+..+.+.++++.........
T Consensus       102 a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~  143 (501)
T 3st8_A          102 GLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAV  143 (501)
T ss_dssp             HHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccc
Confidence            9988653   3566666665 567889999999887665543

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=92.31  E-value=1.9  Score=35.19  Aligned_cols=89  Identities=10%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHHH
Q 023346           77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGMLH  154 (283)
Q Consensus        77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~gk~~a~n~g~~~  154 (283)
                      ....|..+++.+.+        . . .-+|+|+.+.  +.    +.++..++   ++.++.++  ...|.+ .+..+++.
T Consensus        26 gkpli~~~l~~l~~--------~-~-~~~ivvv~~~--~~----i~~~~~~~---~~~~~~~~~~~~~g~~-~~~~~~~~   85 (262)
T 1vic_A           26 GKPMIQHVFEKALQ--------S-G-ASRVIIATDN--EN----VADVAKSF---GAEVCMTSVNHNSGTE-RLAEVVEK   85 (262)
T ss_dssp             TEEHHHHHHHHHHH--------T-T-CSEEEEEESC--HH----HHHHHHHT---TCEEEECCCSSCCHHH-HHHHHHHH
T ss_pred             CeEHHHHHHHHHHh--------C-C-CceEEEECCc--HH----HHHHHHhc---CCEEEECCccccCChH-HHHHHHHH
Confidence            44566666666655        1 2 2578888652  22    23333333   46666653  234444 33344443


Q ss_pred             c---CCCEEEEEeCCCC-CChhhHHHHHHHHHHcC
Q 023346          155 S---RGELLLMLDADGA-TKVTDLEKLESQIHAVG  185 (283)
Q Consensus       155 a---~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~  185 (283)
                      .   ..++++++++|.. +.+..++++++.+.+.+
T Consensus        86 l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~  120 (262)
T 1vic_A           86 LAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN  120 (262)
T ss_dssp             TTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHT
T ss_pred             hccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcC
Confidence            3   5699999999995 58999999999887654

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=92.29  E-value=0.33  Score=43.22  Aligned_cols=89  Identities=17%  Similarity=0.211  Sum_probs=58.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcC-
Q 023346           78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR-  156 (283)
Q Consensus        78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~-  156 (283)
                      ...|...++.+.+        . . --+|+|+-....    +.++++....   +++++..+...|.+.++..|++... 
T Consensus        36 ~pli~~~l~~l~~--------~-~-~~~i~vv~~~~~----~~i~~~~~~~---~~~~v~~~~~~g~~~~i~~~~~~~~~   98 (459)
T 4fce_A           36 KPMVQHVIDAAMK--------L-G-AQHVHLVYGHGG----ELLKKTLADP---SLNWVLQAEQLGTGHAMQQAAPHFAD   98 (459)
T ss_dssp             EEHHHHHHHHHHH--------H-T-CSCEEEEESSCH----HHHHHHC--------CEEECSSCCCHHHHHHHHGGGSCT
T ss_pred             eeHHHHHHHHHHh--------C-C-CCcEEEEeCCCH----HHHHHHhccC---CcEEEeCCCCCCcHHHHHHHHHhcCC
Confidence            3455555555554        1 1 236777764332    2233332222   4677777777899999999998876 


Q ss_pred             CCEEEEEeCCC-CCChhhHHHHHHHHHH
Q 023346          157 GELLLMLDADG-ATKVTDLEKLESQIHA  183 (283)
Q Consensus       157 ~d~i~~~D~D~-~~~~~~l~~~~~~~~~  183 (283)
                      .+.++++++|. .+.+..++++++.+.+
T Consensus        99 ~~~~lv~~~D~P~i~~~~i~~l~~~~~~  126 (459)
T 4fce_A           99 DEDILMLYGDVPLISVDTLQRLLAAKPE  126 (459)
T ss_dssp             TSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred             CCcEEEEeCCcccCCHHHHHHHHHHHhh
Confidence            48999999999 5689999999987754

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=91.69  E-value=0.58  Score=38.54  Aligned_cols=54  Identities=7%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~  186 (283)
                      .+.++..+...|.+.++..|++....+.++++.+|.... ..+.++++.+.+...
T Consensus        98 ~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~-~~l~~l~~~~~~~~~  151 (269)
T 4ecm_A           98 SFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFS-DDIRPYVEEFTNQKE  151 (269)
T ss_dssp             EEEEEECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEES-SCSHHHHHHHHTSSS
T ss_pred             eEEEeeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCc-cCHHHHHHHHHhcCC
Confidence            466666666789999999998887789999999999776 678888888865443

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=91.66  E-value=0.11  Score=40.86  Aligned_cols=49  Identities=16%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             cEEEEEcCC-CCCHHHHHHHHHHHcCC-CEEEEEeCCC-CCChhhHHHHHHHH
Q 023346          132 NVRIILLGR-NHGKGEAIRKGMLHSRG-ELLLMLDADG-ATKVTDLEKLESQI  181 (283)
Q Consensus       132 ~~~~~~~~~-~~gk~~a~n~g~~~a~~-d~i~~~D~D~-~~~~~~l~~~~~~~  181 (283)
                      ++ ++.++. ..|...++..|++.... +.++++++|. .++++.++++++.+
T Consensus        61 ~~-~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~  112 (197)
T 3d5n_A           61 QI-VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF  112 (197)
T ss_dssp             SC-EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC
T ss_pred             CE-EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh
Confidence            45 665543 36889999999998865 8999999999 46899999998876

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}

Probab=91.62  E-value=0.58  Score=36.61  Aligned_cols=35  Identities=14%  Similarity=0.008  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHH----cCCCEEEEEeCC---CCCChhhHHHHH
Q 023346          144 KGEAIRKGMLH----SRGELLLMLDAD---GATKVTDLEKLE  178 (283)
Q Consensus       144 k~~a~n~g~~~----a~~d~i~~~D~D---~~~~~~~l~~~~  178 (283)
                      -..|+|..+..    .+.|+++++|||   ...+|+.+.+++
T Consensus        37 I~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl   78 (203)
T 2c0n_A           37 VAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKF   78 (203)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHH
Confidence            44555555544    567999999999   999999999998

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=91.59  E-value=2.5  Score=33.52  Aligned_cols=45  Identities=4%  Similarity=0.022  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHHc----C---CCEEEEEeCCC-CCChhhHHHHHHHHHHcC
Q 023346          141 NHGKGEAIRKGMLHS----R---GELLLMLDADG-ATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       141 ~~gk~~a~n~g~~~a----~---~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~  185 (283)
                      ..|...++..|++..    .   .++++++++|. .+.++.++++++.+.+.+
T Consensus        83 ~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~  135 (236)
T 2vsh_A           83 GADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHD  135 (236)
T ss_dssp             CSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSS
T ss_pred             CCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcC
Confidence            357788888888776    3   48999999999 668999999999887653

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=91.40  E-value=0.96  Score=36.22  Aligned_cols=76  Identities=12%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             ceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcC-CCEEEEEeCCCC-CChhhHHHHHHH
Q 023346          103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR-GELLLMLDADGA-TKVTDLEKLESQ  180 (283)
Q Consensus       103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~-~d~i~~~D~D~~-~~~~~l~~~~~~  180 (283)
                      --+|+||-+...+...+ +.    .++...++++..  ..|...++..|++... .++++++++|.. ++++.++++++.
T Consensus        51 ~~~ivvv~~~~~~~~~~-~~----~~~~~~v~~~~~--~~g~~~~i~~al~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~  123 (236)
T 1i52_A           51 VKRVVIAISPGDSRFAQ-LP----LANHPQITVVDG--GDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLAL  123 (236)
T ss_dssp             EEEEEEEECTTCCSGGG-SG----GGGCTTEEEEEC--CSSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGG
T ss_pred             CCeEEEEeCccHHHHHH-HH----hcCCCCEEEECC--CCCHHHHHHHHHHhcCCCCEEEEEcCccccCCHHHHHHHHHH
Confidence            34777776643333322 22    221114666543  3588888889998874 799999999985 588999999987


Q ss_pred             HHHcC
Q 023346          181 IHAVG  185 (283)
Q Consensus       181 ~~~~~  185 (283)
                      +.+.+
T Consensus       124 ~~~~~  128 (236)
T 1i52_A          124 SETSR  128 (236)
T ss_dssp             GGTCS
T ss_pred             HHhcC
Confidence            75543

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=91.37  E-value=0.62  Score=39.18  Aligned_cols=100  Identities=10%  Similarity=0.045  Sum_probs=63.1

Q ss_pred             EEeec-CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCC-cchHHHHHHHHHHcCCCcEEEEEcC---------
Q 023346           71 IIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILLG---------  139 (283)
Q Consensus        71 iip~~-ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~---------  139 (283)
                      ++|.- +....|..+|+.+.+.          .--+|+||-.... +...+.+......  ..++.++..+         
T Consensus        25 l~~ig~~g~pli~~~l~~~~~~----------~~~~i~vv~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~   92 (303)
T 3pnn_A           25 LDGIGPGGDTIMDYSVYDAIRA----------GFGRLVFVIRHSFEKEFREKILTKYEG--RIPVELVFQELDRLPEGFS   92 (303)
T ss_dssp             CCCCSTTSCCHHHHHHHHHHHH----------TCCEEEEEECGGGHHHHHHHTHHHHTT--TSCEEEEECCTTCCCTTCC
T ss_pred             EeEcCCCCeeHHHHHHHHHHHC----------CCCeEEEEcCchHHHHHHHHHHHHhcc--CCcEEEEeccccccccccc
Confidence            34553 3456677777766551          1347777765331 2233333221111  1257777665         


Q ss_pred             ------CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          140 ------RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       140 ------~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                            ...|.+.|+-.+......+ ++++.+|....++.++++++.+.+
T Consensus        93 ~~~~~~~~~Gt~~al~~a~~~i~~~-~lV~~gD~l~~~~~~~~l~~~~~~  141 (303)
T 3pnn_A           93 CPEGREKPWGTNHAVLMGRDAIREP-FAVINADDFYGRNGFEVLARKLMT  141 (303)
T ss_dssp             CCTTCCSCCCHHHHHHTTTTTCCSC-EEEEESSCBCCHHHHHHHHHHHHT
T ss_pred             ccccccccCCcHHHHHHHHHhcCCC-EEEEECCeecCHHHHHHHHHHHHH
Confidence                  4689999998888877544 566789999999999999998875

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=90.90  E-value=0.42  Score=37.59  Aligned_cols=49  Identities=18%  Similarity=0.178  Sum_probs=40.4

Q ss_pred             cEEEEEcCC-C-CCHHHHHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHH
Q 023346          132 NVRIILLGR-N-HGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQ  180 (283)
Q Consensus       132 ~~~~~~~~~-~-~gk~~a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~  180 (283)
                      ++.++..+. . .|...++..|++....++++++++|. .+.++.++++++.
T Consensus        65 ~~~~v~~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           65 GLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             SCCEECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             CCeEEecCCCCCCCHHHHHHHHHHhCCCCcEEEEeCCcCcCCHHHHHHHHhh
Confidence            466665542 3 68999999999999899999999999 5689999999876

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=90.67  E-value=0.38  Score=40.25  Aligned_cols=54  Identities=19%  Similarity=0.125  Sum_probs=45.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCC--hhhHHHHHHHHHHcC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK--VTDLEKLESQIHAVG  185 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~--~~~l~~~~~~~~~~~  185 (283)
                      ++.++..+...|.+.++..|+.....+.++++.+|..+.  +..++++++.+.+..
T Consensus       107 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~  162 (297)
T 2ux8_A          107 NIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVG  162 (297)
T ss_dssp             SEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHC
T ss_pred             ceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcC
Confidence            577777776789999999988887778899999999987  688999999887654

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=90.37  E-value=2.4  Score=35.60  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=60.3

Q ss_pred             EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHHH
Q 023346           72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIRK  150 (283)
Q Consensus        72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~~~~~~~~~~~gk~~a~n~  150 (283)
                      +|..+....|..+++.+.+         .  --+|+|+-+..   ..+.+.+.... +..+++.++..+...|.+.++..
T Consensus        31 l~i~gg~pli~~~l~~l~~---------~--~~~i~vv~~~~---~~~~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~~   96 (308)
T 2qh5_A           31 LKLFDHKSLFELSFKRNAS---------L--VDETLIVCNEK---HYFLALEEIKNEIKNKSVGFLLESLSKNTANAIAL   96 (308)
T ss_dssp             CTTBTTBCHHHHHHHHHHT---------T--CSEEEEEEEGG---GHHHHHHHTTTTCSSCEEEEEEESSCCCHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHc---------c--CCCEEEEEChh---HHHHHHHHHHHhhCCCccEEEeCCCCCChHHHHHH
Confidence            3443455666666666654         1  23677665421   22233333333 32114666766667899999888


Q ss_pred             HHHHcC-CCEEEEEeCCCCC-ChhhHHHHHHH
Q 023346          151 GMLHSR-GELLLMLDADGAT-KVTDLEKLESQ  180 (283)
Q Consensus       151 g~~~a~-~d~i~~~D~D~~~-~~~~l~~~~~~  180 (283)
                      +..... .++++++.+|... +++.+.++++.
T Consensus        97 a~~~l~~~~~~lv~~~D~~~~~~~~~~~~~~~  128 (308)
T 2qh5_A           97 SALMSDKEDLLIVTPSDHLIKDLQAYENAIKK  128 (308)
T ss_dssp             HHHTSCTTSEEEEEESSCBCCCHHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEEcCCccccCHHHHHHHHHH
Confidence            888775 4589999999988 78889999886

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=90.32  E-value=0.16  Score=39.59  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=54.4

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      ....|..+++.+.+         .. --+|+|+-+...+...+.+.+   .++ ..++.++..+ ..|...++..|++..
T Consensus        26 g~pli~~~l~~l~~---------~~-~~~v~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~-~~g~~~si~~al~~~   91 (196)
T 3rsb_A           26 GRCLIDYVVSPLLK---------SK-VNNIFIATSPNTPKTKEYINS---AYKDYKNIVVIDTS-GKGYIEDLNECIGYF   91 (196)
T ss_dssp             TEEHHHHHHHHHHS---------SS-CCCEEEECCTTCHHHHHHHHH---HTTTTTEEEE---------CCCCCTTTTTC
T ss_pred             CEEHHHHHHHHHHH---------CC-CCEEEEEeCCChHHHHHHHHh---hccCCCCEEEEECC-CCCcHHHHHHHHHhC
Confidence            34555666665554         12 347777765444334444433   121 0145666543 456666777777777


Q ss_pred             CCCEEEEEeCCCC-CChhhHHHHHHHHHH
Q 023346          156 RGELLLMLDADGA-TKVTDLEKLESQIHA  183 (283)
Q Consensus       156 ~~d~i~~~D~D~~-~~~~~l~~~~~~~~~  183 (283)
                       .+.++++.+|.. +.++.++++++.+.+
T Consensus        92 -~~~vlv~~~D~P~i~~~~i~~l~~~~~~  119 (196)
T 3rsb_A           92 -SEPFLVVSSDLINLKSKIINSIVDYFYC  119 (196)
T ss_dssp             -SSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred             -CCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence             899999999995 599999999999976

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=90.16  E-value=1.3  Score=35.88  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCCCHHHHHHHHHHH
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNHGKGEAIRKGMLH  154 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~~gk~~a~n~g~~~  154 (283)
                      +..+.|..+|+.+.+         ...--+|+||-+...   .+.+++...++. ...+.++..  ..+...+.-.|++.
T Consensus        30 ~Gkpll~~~l~~~~~---------~~~~~~ivvv~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~   95 (246)
T 3f1c_A           30 NGKPIIVHTVEKFIL---------NTRFDKILISSPKEW---MNHAEDNIKKYISDDRIVVIEG--GEDRNETIMNGIRF   95 (246)
T ss_dssp             TTEEHHHHHHHHHHT---------CTTCSEEEEEECGGG---HHHHHHHHHHHCCCTTEEEEEC--CSSHHHHHHHHHHH
T ss_pred             CCeeHHHHHHHHHHc---------CCCCCEEEEEeCHHH---HHHHHHHHHHhCCCCCEEEECC--CCchHHHHHHHHHH
Confidence            344566666666654         222357777765322   222333333321 125666653  34666777777776


Q ss_pred             cC-------CCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          155 SR-------GELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       155 a~-------~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      ..       .++++++|+|. .+.++.++++++.+.+.+.
T Consensus        96 l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a  135 (246)
T 3f1c_A           96 VEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGA  135 (246)
T ss_dssp             HHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSE
T ss_pred             HhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC
Confidence            53       58999999997 5589999999999987643

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=89.89  E-value=3.4  Score=33.15  Aligned_cols=90  Identities=12%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +..+.|..+++.+.+         ...--+|+||-+...   .+.++++...    .+.++..  ..+...+.-.|++..
T Consensus        33 ~Gkpll~~~l~~~~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~----~v~~v~g--g~~r~~sv~~gl~~~   94 (231)
T 3q80_A           33 DGQTLIERAVDGLLD---------SGVVDTVVVAVPADR---TDEARQILGH----RAMIVAG--GSNRTDTVNLALTVL   94 (231)
T ss_dssp             TTEEHHHHHHHHHHH---------TSCCCEEEEEECGGG---HHHHHHHHGG----GCEEEEC--CSSHHHHHHHHHGGG
T ss_pred             CCeEHHHHHHHHHHh---------CCCCCeEEEECChHH---HHHHHHHhcC----CeEEEcC--CCchHHHHHHHHHHh
Confidence            445556666666654         122347888765322   2233333322    3556653  234567788888876


Q ss_pred             C----CCEEEEEeCCCCC-ChhhHHHHHHHHHH
Q 023346          156 R----GELLLMLDADGAT-KVTDLEKLESQIHA  183 (283)
Q Consensus       156 ~----~d~i~~~D~D~~~-~~~~l~~~~~~~~~  183 (283)
                      .    .++++++|+|..+ +++.++++++.+.+
T Consensus        95 ~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~  127 (231)
T 3q80_A           95 SGTAEPEFVLVHDAARALTPPALVARVVEALRD  127 (231)
T ss_dssp             C---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred             hhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence            5    4899999999765 89999999999876

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=89.68  E-value=1.1  Score=37.36  Aligned_cols=98  Identities=13%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHHH
Q 023346           72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      +|.++. +.|...++.+..          ..--+|+||..+.+.   +.++++...   +. ..+.++..+...|.+.++
T Consensus        28 lpi~gk-pli~~~l~~l~~----------~gi~~I~vv~~~~~~---~~i~~~l~~g~~~g-~~i~~~~~~~~~G~~~al   92 (293)
T 1fxo_A           28 LPVYDK-PMIYYPLSTLML----------AGIREILIISTPQDT---PRFQQLLGDGSNWG-LDLQYAVQPSPDGLAQAF   92 (293)
T ss_dssp             SEETTE-ETTHHHHHHHHH----------TTCCEEEEEECTTTH---HHHHHHHTTSGGGT-CEEEEEECSSCCCGGGHH
T ss_pred             CeECCE-eHHHHHHHHHHH----------CCCCEEEEEeccccH---HHHHHHHhcccccC-ceEEEeeCCCCCCHHHHH
Confidence            455654 777777777765          113478777533221   222333322   22 245666666678888888


Q ss_pred             HHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHc
Q 023346          149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV  184 (283)
Q Consensus       149 n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~  184 (283)
                      ..|++....+-++++.+|..+....+.++++.+.+.
T Consensus        93 ~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~  128 (293)
T 1fxo_A           93 LIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQR  128 (293)
T ss_dssp             HHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHTC
T ss_pred             HHHHHHhCCCCEEEEECChhccCccHHHHHHHHHhc
Confidence            888887765655556699877556788888877544

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=89.66  E-value=1.1  Score=39.87  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=59.0

Q ss_pred             CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcC-
Q 023346           78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR-  156 (283)
Q Consensus        78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~-  156 (283)
                      ...|...++.+.+        . . --+|+|+-+..    .+.++++..++   +++++..+...|.+.++..|++... 
T Consensus        33 kpli~~~l~~l~~--------~-~-~~~iivv~~~~----~~~i~~~~~~~---~~~~v~~~~~~g~~~~~~~~~~~~~~   95 (456)
T 2v0h_A           33 KPMVKHVIDTAHQ--------L-G-SENIHLIYGHG----GDLMRTHLANE---QVNWVLQTEQLGTAHAVQQAAPFFKD   95 (456)
T ss_dssp             EEHHHHHHHHHHH--------T-T-CSCEEEEECTT----HHHHHHHTTTC---CCEEEECSCCCCHHHHHHHHGGGCCT
T ss_pred             ccHHHHHHHHHHh--------C-C-CCcEEEEeCCC----HHHHHHHhhcC---CcEEEeCCCCCCcHHHHHHHHHhcCC
Confidence            3455555555554        1 1 23677765532    12333333222   4667776667899999999998875 


Q ss_pred             CCEEEEEeCCCC-CChhhHHHHHHHHHH
Q 023346          157 GELLLMLDADGA-TKVTDLEKLESQIHA  183 (283)
Q Consensus       157 ~d~i~~~D~D~~-~~~~~l~~~~~~~~~  183 (283)
                      .+.++++++|.. +.+..++++++.+.+
T Consensus        96 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~  123 (456)
T 2v0h_A           96 NENIVVLYGDAPLITKETLEKLIEAKPE  123 (456)
T ss_dssp             TSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred             CCeEEEEcCCcceeCHHHHHHHHHHHhc
Confidence            799999999995 688999999887654

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=89.60  E-value=6  Score=30.66  Aligned_cols=94  Identities=18%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             ceEEEEEeecCCCCChH--H---------HHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEE
Q 023346           66 KYISLIIPAFNEEHRLP--G---------ALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVR  134 (283)
Q Consensus        66 p~vsviip~~ne~~~l~--~---------~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~  134 (283)
                      +++.+||++-+....+.  +         .++.+++.+..      . --+|+||-+....      +.+.      +++
T Consensus        13 ~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~------~-~~~i~vv~~~~~~------~~~~------~~~   73 (201)
T 2e8b_A           13 KVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKS------V-FKEVYIVAKDREK------FSFL------NAP   73 (201)
T ss_dssp             SCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHT------T-CSEEEEEESCSGG------GGGG------TCC
T ss_pred             cCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHH------h-CCEEEEEeCcHHH------hhcC------Cce
Confidence            34678888877665542  2         22233332221      1 3477777653322      1111      255


Q ss_pred             EEEcC-CCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHH-HH
Q 023346          135 IILLG-RNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEK-LE  178 (283)
Q Consensus       135 ~~~~~-~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~-~~  178 (283)
                      ++..+ ...|.+.++..|++....+.++++.+|..+ +++.+++ ++
T Consensus        74 ~v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           74 VVLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             EEECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             EEecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            66644 357999999999999888999999999965 8888888 77

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=89.47  E-value=0.93  Score=40.44  Aligned_cols=91  Identities=9%  Similarity=0.010  Sum_probs=60.9

Q ss_pred             CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHcC-
Q 023346           78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR-  156 (283)
Q Consensus        78 ~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a~-  156 (283)
                      .+.|...++.+.+          ..--+|+|+-+..    .+.++++..+    ++.++..+...|.+.++..|++... 
T Consensus        39 kpli~~~l~~l~~----------~g~~~iivv~~~~----~~~i~~~~~~----~i~~v~~~~~~G~~~sl~~a~~~~~~  100 (468)
T 1hm9_A           39 ISMLEHVFRSVGA----------IQPEKTVTVVGHK----AELVEEVLAG----QTEFVTQSEQLGTGHAVMMTEPILEG  100 (468)
T ss_dssp             EEHHHHHHHHHHT----------TCCSEEEEEECTT----HHHHHHSSSS----SSEEEECSSCCCHHHHHHTTHHHHTT
T ss_pred             ccHHHHHHHHHHh----------cCCCCEEEEECCC----HHHHHHHhCC----CcEEEeCCccCChHHHHHHHHHHhcc
Confidence            3556666665544          1234777775432    1222222211    4667766667899999998888775 


Q ss_pred             -CCEEEEEeCCCC-CChhhHHHHHHHHHHcCC
Q 023346          157 -GELLLMLDADGA-TKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       157 -~d~i~~~D~D~~-~~~~~l~~~~~~~~~~~~  186 (283)
                       .+.++++++|.. +.+..++++++.+.+...
T Consensus       101 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  132 (468)
T 1hm9_A          101 LSGHTLVIAGDTPLITGESLKNLIDFHINHKN  132 (468)
T ss_dssp             CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence             689999999996 689999999998876543

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=89.25  E-value=3.8  Score=32.12  Aligned_cols=88  Identities=14%  Similarity=0.072  Sum_probs=56.6

Q ss_pred             CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc-
Q 023346           77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS-  155 (283)
Q Consensus        77 e~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a-  155 (283)
                      ....|..+++.+.+.         ..--+|+|+-+...   .+.++++.. .  .++.++..  ..+...++..|++.. 
T Consensus        29 g~pli~~~l~~l~~~---------~~~~~i~vv~~~~~---~~~~~~~~~-~--~~v~~~~~--~~~~~~~i~~al~~~~   91 (223)
T 2xwl_A           29 GTPLLEHALSGLRAS---------GVIDRIVIAVPPAL---TDESKLVFG-G--EDSVIVSG--GVDRTESVALALEAAG   91 (223)
T ss_dssp             TEEHHHHHHHHHHHH---------SCCSEEEEEECGGG---HHHHHHHTC-B--TTEEEEEC--CSSHHHHHHHHHTTCT
T ss_pred             CeEHHHHHHHHHhcC---------CCCCeEEEEEcccH---HHHHHHHhc-c--CCeEEEcC--CCCHHHHHHHHHHhcC
Confidence            445566666665541         11237777765321   222333321 1  25766654  346788888899887 


Q ss_pred             CCCEEEEEeCCCC-CChhhHHHHHHHH
Q 023346          156 RGELLLMLDADGA-TKVTDLEKLESQI  181 (283)
Q Consensus       156 ~~d~i~~~D~D~~-~~~~~l~~~~~~~  181 (283)
                      ..++++++++|.. ++++.++++++.+
T Consensus        92 ~~~~vlv~~~D~P~~~~~~i~~l~~~~  118 (223)
T 2xwl_A           92 DAEFVLVHDAARALTPPALIARVVAAL  118 (223)
T ss_dssp             TCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence            7799999999994 5889999999988

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=88.18  E-value=2.1  Score=35.77  Aligned_cols=99  Identities=12%  Similarity=0.151  Sum_probs=60.2

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ++|.++ .+.|...|+.+..          ..--+|+||-....   .+.++++...   +. .++.++..+...|.+.+
T Consensus        28 llpi~g-kpli~~~l~~l~~----------~gi~~Iivv~~~~~---~~~i~~~l~~g~~~g-~~i~~~~~~~~~G~~~a   92 (295)
T 1lvw_A           28 LLPIYD-KPMIYYPLSVLML----------AGIRDILIISTPRD---LPLYRDLLGDGSQFG-VRFSYRVQEEPRGIADA   92 (295)
T ss_dssp             GSEETT-EETTHHHHHHHHH----------TTCCEEEEEECTTT---HHHHHHHHTTSGGGT-SEEEEEECSSCCCGGGH
T ss_pred             ecEECC-eeHHHHHHHHHHH----------CCCCeEEEEeccch---HHHHHHHhhhccccC-ceEEEeeCCCCCChHHH
Confidence            345566 4777777777765          11347877753221   1223333322   22 24666666666788888


Q ss_pred             HHHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcC
Q 023346          148 IRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVG  185 (283)
Q Consensus       148 ~n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~  185 (283)
                      +-.|++.... +++++. +|..+....+.++++.+.+..
T Consensus        93 l~~a~~~i~~~~~~lv~-gD~~~~~~~l~~~l~~~~~~~  130 (295)
T 1lvw_A           93 FIVGKDFIGDSKVALVL-GDNVFYGHRFSEILRRAASLE  130 (295)
T ss_dssp             HHHTHHHHTTSCEEEEE-TTCCEECTTHHHHHHHHHTCC
T ss_pred             HHHHHHHhCCCcEEEEE-CCccccCcCHHHHHHHHHHcC
Confidence            8888877654 555555 998875467888888876443

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=87.76  E-value=0.98  Score=37.79  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=44.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCC----hh---hHHHHHHHHHHcCC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK----VT---DLEKLESQIHAVGR  186 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~----~~---~l~~~~~~~~~~~~  186 (283)
                      .+.++..+...|.+.++-.|+.....+.++++.+|..+.    +.   .++++++.+.+...
T Consensus       103 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~  164 (302)
T 2e3d_A          103 TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH  164 (302)
T ss_dssp             EEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC
T ss_pred             ceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC
Confidence            466666666789999999998887668899999999986    45   79999998866544

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=85.47  E-value=1.4  Score=38.26  Aligned_cols=50  Identities=12%  Similarity=0.231  Sum_probs=39.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEeCCCC-CChhhHHHHHHHHHHc
Q 023346          133 VRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAV  184 (283)
Q Consensus       133 ~~~~~~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~-~~~~~l~~~~~~~~~~  184 (283)
                      ++++.  ...|...++..|++....++++++++|.. ++++.++++++.+.+.
T Consensus        67 v~~v~--~g~g~~~sv~~aL~~l~~d~vlv~~~D~Pli~~~~i~~li~~~~~~  117 (371)
T 1w55_A           67 YEFIE--GGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDKA  117 (371)
T ss_dssp             SEEEE--CCSSHHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGGC
T ss_pred             CEEEe--CCCChHHHHHHHHHhcCCCeEEEEeCCcccCCHHHHHHHHHHHHhc
Confidence            45553  24678888899998887899999999985 5899999999877654

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=84.46  E-value=3.2  Score=33.13  Aligned_cols=77  Identities=9%  Similarity=0.055  Sum_probs=54.1

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +....+...++.+.+          ... +|+|+-+.  +...+    +.      ++++   +...|.+.++..|++..
T Consensus        30 ~g~pll~~~l~~l~~----------~~~-~ivvv~~~--~~i~~----~~------~~~~---~~~~g~~~~i~~a~~~~   83 (232)
T 2dpw_A           30 RGRPMVEWVLEALYA----------AGL-SPVYVGEN--PGLVP----AP------ALTL---PDRGGLLENLEQALEHV   83 (232)
T ss_dssp             TTEETHHHHHHHHHH----------TTC-EEEEESCC--SSCSS----CC------SEEE---CCCSSHHHHHHHHHHTC
T ss_pred             CCEEHHHHHHHHHHh----------cCC-EEEEEeCh--HHHhh----hc------CeEe---cCCCCHHHHHHHHHHHc
Confidence            455677777777765          223 88887332  22111    11      3554   45679999999999888


Q ss_pred             CCCEEEEEeCCCC-CChhhHHHHHH
Q 023346          156 RGELLLMLDADGA-TKVTDLEKLES  179 (283)
Q Consensus       156 ~~d~i~~~D~D~~-~~~~~l~~~~~  179 (283)
                      . +.++++++|.. +.++.++++++
T Consensus        84 ~-~~~lv~~~D~P~~~~~~i~~l~~  107 (232)
T 2dpw_A           84 E-GRVLVATGDIPHLTEEAVRFVLD  107 (232)
T ss_dssp             C-SEEEEEETTCTTCCHHHHHHHHH
T ss_pred             C-CCEEEEeCCcccCCHHHHHHHHh
Confidence            7 99999999996 58999999998

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=83.94  E-value=2.5  Score=35.78  Aligned_cols=54  Identities=11%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHcCC--CEEEEEeCCCCCC-hhhHHHHHHHHHHcC
Q 023346          132 NVRIILLGRNHGKGEAIRKGMLHSRG--ELLLMLDADGATK-VTDLEKLESQIHAVG  185 (283)
Q Consensus       132 ~~~~~~~~~~~gk~~a~n~g~~~a~~--d~i~~~D~D~~~~-~~~l~~~~~~~~~~~  185 (283)
                      .+.++..+...|.+.++..|+.....  +.++++.+|..+. +..+.++++.+.+..
T Consensus       106 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~  162 (323)
T 2pa4_A          106 KAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFG  162 (323)
T ss_dssp             EEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTC
T ss_pred             ceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhcC
Confidence            46667666678999999988877643  4588999999986 588999998886544

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=83.13  E-value=7.2  Score=30.80  Aligned_cols=93  Identities=11%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +....|..+++.+.+         ...--+|+|+-+...   .+.++++.. +. .++....  ...+...++-.|++.+
T Consensus        39 ~Gkpli~~~i~~l~~---------~~~~~~ivVv~~~~~---~~~~~~~~~-~~-~~~~~~~--gg~~~~~sv~~al~~~  102 (234)
T 1vpa_A           39 EGRMLFEYPLSTFLK---------SEAIDGVVIVTRREW---FEVVEKRVF-HE-KVLGIVE--GGDTRSQSVRSALEFL  102 (234)
T ss_dssp             TTEETTHHHHHHHHH---------CTTCSEEEEEECGGG---HHHHHTTCC-CT-TEEEEEE--CCSSHHHHHHHHHHHH
T ss_pred             CCeEHHHHHHHHHHc---------CCCCCeEEEEEChHH---HHHHHHHhc-cC-CceEEeC--CCCcHHHHHHHHHHHh
Confidence            455677777777765         111347888765321   222222221 11 1232221  1233677777788765


Q ss_pred             ---CCCEEEEEeCCC-CCChhhHHHHHHHHHHc
Q 023346          156 ---RGELLLMLDADG-ATKVTDLEKLESQIHAV  184 (283)
Q Consensus       156 ---~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~  184 (283)
                         ..++++++++|. .++++.++++++.+...
T Consensus       103 ~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~  135 (234)
T 1vpa_A          103 EKFSPSYVLVHDSARPFLRKKHVSEVLRRARET  135 (234)
T ss_dssp             GGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred             hhcCCCEEEEecCcccCCCHHHHHHHHHHHHhc
Confidence               368999999998 56899999999988664

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=80.74  E-value=1.6  Score=36.60  Aligned_cols=96  Identities=16%  Similarity=0.125  Sum_probs=57.4

Q ss_pred             EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHHH
Q 023346           72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEAI  148 (283)
Q Consensus        72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~gk~~a~  148 (283)
                      +|.++ .+.|...++.+..          ..--+|+||-....   .+.++++...   +. .++.++..+...|.+.++
T Consensus        29 lpi~g-kpli~~~l~~l~~----------~gi~~I~vv~~~~~---~~~i~~~l~~g~~~g-~~i~~~~~~~~~G~~~al   93 (296)
T 1mc3_A           29 LPIYD-KPMIYYPLSVLML----------AGIREILIITTPED---KGYFQRLLGDGSEFG-IQLEYAEQPSPDGLAQAF   93 (296)
T ss_dssp             SEETT-EETTHHHHHHHHH----------TTCCEEEEEECTTT---HHHHHHHHTTSGGGT-CEEEEEECSSCCCSTHHH
T ss_pred             eEECC-eeHHHHHHHHHHh----------CCCCcEEEEechhH---HHHHHHHHhcccccC-ceEEEeccCCCCCHHHHH
Confidence            45555 4677777777765          11347887753222   1223333322   22 245666666667888888


Q ss_pred             HHHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHH
Q 023346          149 RKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHA  183 (283)
Q Consensus       149 n~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~  183 (283)
                      -.|++.... ++++++ +|..+....+.++++.+.+
T Consensus        94 ~~a~~~i~~~~~~lv~-gD~~~~~~~l~~~l~~~~~  128 (296)
T 1mc3_A           94 IIGETFLNGEPSCLVL-GDNIFFGQGFSPKLRHVAA  128 (296)
T ss_dssp             HHTHHHHTTSCEEEEE-TTEEEECSSCHHHHHHHTT
T ss_pred             HHHHHHhCCCCEEEEE-CCccccccCHHHHHHHHHH
Confidence            888877654 455555 9987654677888877644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d2bo4a1	381	c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG	1e-11
d1xhba2	328	c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa	1e-09
d1omza_	265	c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf	3e-08
d1qg8a_	255	c.68.1.1 (A:) Spore coat polysaccharide biosynthes	1e-06

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 19/123 (15%)

Query: 70  LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVA-------- 121
           ++ P  +E   +            +         +EVL I        + V         
Sbjct: 3   VVFPFKHEHPEVLLHNVRVAAAHPRV--------HEVLCIGYERDQTYEAVERAAPEISR 54

Query: 122 --FDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTD-LEKLE 178
                V     + +  +  G+  G   A+R  +  ++ E +   DAD  +   D + K E
Sbjct: 55  ATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAE 114

Query: 179 SQI 181
              
Sbjct: 115 EAA 117

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 42/217 (19%), Positives = 71/217 (32%), Gaps = 10/217 (4%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
            S++I   NE       L  T++ +  R+ +      E++++DD S     +   +   K
Sbjct: 24  TSVVIVFHNEAWST---LLRTVHSVINRSPRH--MIEEIVLVDDASERDFLKRPLESYVK 78

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187
                V +I + +  G   A  KG   SRG+++  LDA        LE L ++I    R 
Sbjct: 79  KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRT 138

Query: 188 EYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATVQYCDCPRCFICIFLFLCFSFTF 247
                  V  D TF         +G            V   +  R      L +      
Sbjct: 139 VVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMA 198

Query: 248 HCLVEILHLISEEVVPQFFDEGFPSCCYLD---CWSW 281
             L  I     +E+    +D G       +    +  
Sbjct: 199 GGLFSIDRDYFQEI--GTYDAGMDIWGGENLEISFRI 233

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
            +LI+  +N    L   L+   +Y            ++V+++ +   +      ++ +  
Sbjct: 5   FTLIMQTYNRTDLLLRLLN---HYQAV------PSLHKVIVVWNNVGEKGPEELWNSLGP 55

Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
           +    + +I   +   K     +         +LM+D D      DL   
Sbjct: 56  H---PIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFA 102

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 68  ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
           +S+I+ ++N+   +     ++++ +  +   D    +E+ I+DD S++ T  V   F+  
Sbjct: 3   VSVIMTSYNKSDYVA----KSISSILSQTFSD----FELFIMDDNSNEETLNVIRPFLND 54

Query: 128 YTVDNVRIILLGRNH 142
             V   +  + G   
Sbjct: 55  NRVRFYQSDISGVKE 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.96
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	99.94
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	99.84
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	99.35
d1fo8a_	343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	98.12
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	97.82
d1v82a_	252	Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (	96.41
d3cu0a1	261	1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo	95.59
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	93.07
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	92.01
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	89.86
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	88.64
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	88.41
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	85.93
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	80.59

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.6e-29  Score=215.86  Aligned_cols=119  Identities=25%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             CCCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEeCCCCcchH-HHHHHHHHHcCCCcEEEEE
Q 023346           62 DPAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIIL  137 (283)
Q Consensus        62 ~~~~p~vsviip~~ne~-~~l~~~l~s~~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~-~~~~~~~~~~~~~~~~~~~  137 (283)
                      +...|.||||||+|||+ ..|.+||+|+++        |+++.  .|||||||||+|+|. +.++++.++.+ .++++++
T Consensus        18 ~~~~P~vSIIIp~yNe~~~~l~~~l~Si~~--------qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~-~~i~vi~   88 (328)
T d1xhba2          18 PDNLPTTSVVIVFHNEAWSTLLRTVHSVIN--------RSPRHMIEEIVLVDDASERDFLKRPLESYVKKLK-VPVHVIR   88 (328)
T ss_dssp             CSCCCCEEEEEEESSCCHHHHHHHHHHHHH--------SSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSS-SCEEEEE
T ss_pred             CCCCCCEEEEEeccCCcHHHHHHHHHHHHh--------cCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcC-CCeEEEE
Confidence            45678999999999987 569999999998        55444  699999999999975 56677666554 4799999


Q ss_pred             cCCCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCccc
Q 023346          138 LGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY  189 (283)
Q Consensus       138 ~~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~  189 (283)
                      +++|.|.+.|+|.|+++|+||||+|+|+|+.+.|++|+++++.+.+++...+
T Consensus        89 ~~~n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v  140 (328)
T d1xhba2          89 MEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVV  140 (328)
T ss_dssp             CSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred             ecccccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEE
Confidence            9999999999999999999999999999999999999999999998876543

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=4.6e-27  Score=195.94  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=108.1

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcC------
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------  139 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~------  139 (283)
                      |+||||||+||+++.|.++|+|+++        |+++++|||||||||+|+|.++++++..+ +  ++++++.+      
T Consensus         1 P~vSiiip~yN~~~~l~~~l~Si~~--------Qt~~~~eiivvdd~S~d~t~~~l~~~~~~-~--~i~~~~~~~~~~~~   69 (255)
T d1qg8a_           1 PKVSVIMTSYNKSDYVAKSISSILS--------QTFSDFELFIMDDNSNEETLNVIRPFLND-N--RVRFYQSDISGVKE   69 (255)
T ss_dssp             CCEEEEEEESSCTTTHHHHHHHHHT--------CSCCCEEEEEEECSCCHHHHHHHGGGGGS-T--TEEEEECCCCSHHH
T ss_pred             CEEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHhhhh-c--cccccccccccccc
Confidence            7899999999999999999999998        88999999999999999999999988654 3  69998865      


Q ss_pred             --CCCCHHHHHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccce
Q 023346          140 --RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSV  195 (283)
Q Consensus       140 --~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  195 (283)
                        ++.|.++|+|.|++.|+||||+++|+|+.+.|++|+++++.+.++++.+++++...
T Consensus        70 ~~~~~g~~~a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~  127 (255)
T d1qg8a_          70 RTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASK  127 (255)
T ss_dssp             HHSSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred             ccccchhcccccccccccccccccccccccccccchHHHHHHHHHhCCCCCeEeecce
Confidence              57899999999999999999999999999999999999999999988777665543

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.4e-23  Score=168.46  Aligned_cols=116  Identities=14%  Similarity=0.112  Sum_probs=92.6

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE  146 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~  146 (283)
                      ++|||||+||+++.|.+||+|+++        |++++ |+|||||+|+|+|.+.+.+...+.   ...++...++.|++.
T Consensus         4 ~~tvii~tyn~~~~l~~~l~sl~~--------q~~~~-~~iiV~d~~sd~~~~~i~~~~~~~---~~~~~~~~~~~g~~~   71 (265)
T d1omza_           4 SFTLIMQTYNRTDLLLRLLNHYQA--------VPSLH-KVIVVWNNVGEKGPEELWNSLGPH---PIPVIFKPQTANKMR   71 (265)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHTT--------STTEE-EEEEEECCTTCCCTHHHHHHTCCC---SSCEEEEECSSCCGG
T ss_pred             cEEEEEEcCCCHHHHHHHHHHHHc--------CCCcC-eEEEEECCCCCccHHHHHHHhccc---ceEEEEecCCCCchh
Confidence            599999999999999999999987        67766 556666666666555554433332   344444556899999


Q ss_pred             HHHHHHHHcCCCEEEEEeCCCCCChhhHHHHHHHHHHcCCcccccccc
Q 023346          147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS  194 (283)
Q Consensus       147 a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~  194 (283)
                      |+|.|++.|+||||+++|+|+.++|++|+++++.++++++..++.+..
T Consensus        72 a~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~  119 (265)
T d1omza_          72 NRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPR  119 (265)
T ss_dssp             GGGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEE
T ss_pred             hhhhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceecccc
Confidence            999999999999999999999999999999999999988776544433

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=99.35  E-value=6.5e-13  Score=114.33  Aligned_cols=109  Identities=18%  Similarity=0.048  Sum_probs=69.4

Q ss_pred             EEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHH---cCCCcEEEEEc----CCC
Q 023346           69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILL----GRN  141 (283)
Q Consensus        69 sviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~----~~~  141 (283)
                      -||||+|||+..+...+.++.+        ....-.||+|+||+|+|.|.++.+.....   .+ ..+.....    ..+
T Consensus         2 lVVIP~~NEe~~il~~~v~~~a--------~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~-~~v~~~~~~~l~~~~   72 (381)
T d2bo4a1           2 LVVFPFKHEHPEVLLHNVRVAA--------AHPRVHEVLCIGYERDQTYEAVERAAPEISRATG-TPVSVRLQERLGTLR   72 (381)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHH--------HSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHS-CCEEEEECCCCSSSS
T ss_pred             EEEEEcCCCcHHHHHHHHHHHH--------hCCCeeEEEEEcCCCCCcHHHHHHHhhhhhcccc-ccchhhhhccccccc
Confidence            4899999998433222223332        12234577777777777666665544332   12 12332222    124


Q ss_pred             CCHHH----HHHHHHHHcCCCEEEEEeCCC-CCChhhHHHHHHHHHHcCC
Q 023346          142 HGKGE----AIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVGR  186 (283)
Q Consensus       142 ~gk~~----a~n~g~~~a~~d~i~~~D~D~-~~~~~~l~~~~~~~~~~~~  186 (283)
                      .||+.    |+..|++.++||+++|+|||. ..+|+++.+++..++.+.+
T Consensus        73 ~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d  122 (381)
T d2bo4a1          73 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYG  122 (381)
T ss_dssp             SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCS
T ss_pred             CCCcHHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhcC
Confidence            57775    555666789999999999997 5789999999999976433

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: N-acetylglucosaminyltransferase I
domain: N-acetylglucosaminyltransferase I
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.12  E-value=8.5e-06  Score=68.02  Aligned_cols=113  Identities=13%  Similarity=0.075  Sum_probs=76.5

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCC------
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR------  140 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~------  140 (283)
                      -+-|+|-+||++ .+.++|+++++.-      -.....+|+|..||+.+++.+.++.+...     +..+..+.      
T Consensus         3 viPVlv~a~NRP-~l~r~LesLlk~~------p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~-----v~~I~~~~~~~~~~   70 (343)
T d1fo8a_           3 VIPILVIACDRS-TVRRCLDKLLHYR------PSAELFPIIVSQDCGHEETAQVIASYGSA-----VTHIRQPDLSNIAV   70 (343)
T ss_dssp             CCCEEEEESSCT-THHHHHHHHHHHC------SCTTTSCEEEEECTTCHHHHHHHHTTGGG-----SEEEECSCCCCCCC
T ss_pred             cccEEEEEcCHH-HHHHHHHHHHhcC------ccccCccEEEEecCCchhHHHHHHHHHHH-----HHHhcCCcccccee
Confidence            467999999997 6999999998721      12346789999999999999888776543     33443321      


Q ss_pred             ---------CCC----HHHHHHHHHHHcCCCEEEEEeCCCCCChhhHH---HHHHHHHHcCCccccc
Q 023346          141 ---------NHG----KGEAIRKGMLHSRGELLLMLDADGATKVTDLE---KLESQIHAVGRKEYNH  191 (283)
Q Consensus       141 ---------~~g----k~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~---~~~~~~~~~~~~~~~~  191 (283)
                               +.|    -..|+|..+..-..+.++++.+|..+.|+++.   .++..++.++...++.
T Consensus        71 ~~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS  137 (343)
T d1fo8a_          71 QPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVS  137 (343)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             cchhhcccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEe
Confidence                     111    12334444444456999999999999999984   5555555655554443

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.82  E-value=1.3e-05  Score=64.90  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=60.9

Q ss_pred             CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 023346           64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG  143 (283)
Q Consensus        64 ~~p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (283)
                      +.-+++||||-+|+++.+...|..+..-+..     ....++|+||+...                         .....
T Consensus        47 ~~~kvaIIIPyRdR~~hL~~fl~~l~~~L~~-----q~~~y~I~vieQ~~-------------------------~~~FN   96 (271)
T d1pzta_          47 SPHKVAIIIPFRNRQEHLKYWLYYLHPILQR-----QQLDYGIYVINQAG-------------------------ESMFN   96 (271)
T ss_dssp             CSCEEEEEEEESSCHHHHHHHHHHHHHHHHH-----TTCEEEEEEEEECS-------------------------SSCCC
T ss_pred             ccceEEEEEecCChHHHHHHHHHHHHHHHHh-----cCCCEEEEEEeccC-------------------------Ccchh
Confidence            4557999999999998888777777765443     24579999998743                         12478


Q ss_pred             HHHHHHHHHHHc----CCCEEEEEeCCCCCChhh
Q 023346          144 KGEAIRKGMLHS----RGELLLMLDADGATKVTD  173 (283)
Q Consensus       144 k~~a~n~g~~~a----~~d~i~~~D~D~~~~~~~  173 (283)
                      ++..+|.|+..|    ..++++|.|-|..+..+.
T Consensus        97 Rg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~  130 (271)
T d1pzta_          97 RAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDH  130 (271)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred             hhhhhhHHHHHhhhccCccEEEEecCCcCccccc
Confidence            899999988766    457899999998875543

>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.016  Score=45.36  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCC--CCcchHHHHHHHHHHcCCCcEEEEEcCCC--
Q 023346           66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG--SSDGTKRVAFDFVRKYTVDNVRIILLGRN--  141 (283)
Q Consensus        66 p~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~--s~d~t~~~~~~~~~~~~~~~~~~~~~~~~--  141 (283)
                      |.|-||.|+|.+..... -|..+...+..      -+++.-|||+|+  .++.|.+++++.       ++.+.+....  
T Consensus         2 p~I~vVTPTy~R~~Q~~-~LtRLa~TL~l------Vp~l~WIVVEda~~~t~~va~lL~~s-------gl~y~HL~~~~p   67 (252)
T d1v82a_           2 PTIHVVTPTYSRPVQKA-ELTRMANTLLH------VPNLHWLVVEDAPRRTPLTARLLRDT-------GLNYTHLHVETP   67 (252)
T ss_dssp             CEEEEEEEECCSTTHHH-HHHHHHHHHTT------CSSEEEEEEESSSSCCHHHHHHHHHH-------CCEEEEEECCCC
T ss_pred             CCEEEECCCCCchhhHH-HHHHHHhHHhc------CCCceEEEEeCCCCCCHHHHHHHHHc-------CCceEeeccCCC
Confidence            67999999999975443 35666554432      257999999975  356677777765       4444433110  


Q ss_pred             -----CC---------HHHHHHHHHHHcC---------CCEEEEEeCCCCCChhhHHHH
Q 023346          142 -----HG---------KGEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKL  177 (283)
Q Consensus       142 -----~g---------k~~a~n~g~~~a~---------~d~i~~~D~D~~~~~~~l~~~  177 (283)
                           .+         ....+|.|+++.+         .-+|.|.|.|...+-+.+++|
T Consensus        68 ~~~~~~~~~~~~~~~rg~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYsl~lFdem  126 (252)
T d1v82a_          68 RNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEM  126 (252)
T ss_dssp             HHHHCCC-----CCCTTHHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEECHHHHHHH
T ss_pred             cccccccccccccccccHHHHHHHHHHHHHhcccccCcceEEEEecCCCcccHHHHHHH
Confidence                 00         1357899998662         368999999999998888775

>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: 1,3-Glucuronyltransferase I (glcAT-I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.047  Score=42.74  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=64.3

Q ss_pred             eEEEEEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCC--CcchHHHHHHHHHHcCCCcEEEEEcC----C
Q 023346           67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLG----R  140 (283)
Q Consensus        67 ~vsviip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~~~~~~~~----~  140 (283)
                      .|-||.|+|-+.... .-|..+...+..      -+++.-|||+|+.  ++.+.+++++-       ++.+.+..    .
T Consensus         2 TIyvVTPTY~R~~Q~-a~LtRLa~TL~l------Vp~l~WIVVEDa~~~t~~v~~lL~~s-------gl~y~HL~~~tp~   67 (261)
T d3cu0a1           2 TIYVVTPTYARLVQK-AELVRLSQTLSL------VPRLHWLLVEDAEGPTPLVSGLLAAS-------GLLFTHLVVLTPK   67 (261)
T ss_dssp             EEEEEEEECCSTTHH-HHHHHHHHHHTT------SSSEEEEEEESSSSCCHHHHHHHHHH-------CSEEEEEECCCC-
T ss_pred             eEEEECCCCCCchhH-HHHHHHHHHHhc------CCCeeEEEEECCCCCCHHHHHHHHHc-------CCceEEeecCCch
Confidence            477999999996543 335555554432      2479999998753  45567777664       34333321    0


Q ss_pred             CC------------CHHHHHHHHHHHcC-----------------CCEEEEEeCCCCCChhhHHHH
Q 023346          141 NH------------GKGEAIRKGMLHSR-----------------GELLLMLDADGATKVTDLEKL  177 (283)
Q Consensus       141 ~~------------gk~~a~n~g~~~a~-----------------~d~i~~~D~D~~~~~~~l~~~  177 (283)
                      ..            --...+|.|++..+                 .-+|.|.|+|...+-+.+++|
T Consensus        68 ~~~~~~~~~~~~~prgv~qRn~aL~~ir~~~~~~~~~~~~~~~~~~GVVyFADDdNtYsl~LF~em  133 (261)
T d3cu0a1          68 AQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  133 (261)
T ss_dssp             ----------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             hhcccccCcccccccCHHHHHHHHHHHHHcccccccccccccCCCceEEEEecCCCcccHHHHHHH
Confidence            00            01257899999875                 258999999999999888775

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.07  E-value=0.81  Score=34.26  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             CceEEEEEeecCCCCChH--------------HHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCC
Q 023346           65 EKYISLIIPAFNEEHRLP--------------GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV  130 (283)
Q Consensus        65 ~p~vsviip~~ne~~~l~--------------~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~  130 (283)
                      +|+|..|||++.....++              -+++++..         ...--+|+|..|  ++.+.+.+..+      
T Consensus         1 ~~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~k---------s~~id~Iivstd--~~~i~~~~~~~------   63 (228)
T d1qwja_           1 PPHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALD---------AGVFQSVWVSTD--HDEIENVAKQF------   63 (228)
T ss_dssp             CCCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHH---------HTCCSEEEEEES--CHHHHHHHHHT------
T ss_pred             CCCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHh---------cCCcceEEEecc--hhhhhhhhhhc------
Confidence            367999999987765443              34444443         122346666654  34455555443      


Q ss_pred             CcEEEEEcCC-C----CCHHHHHHHHHHHc-CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346          131 DNVRIILLGR-N----HGKGEAIRKGMLHS-RGELLLMLDADGAT-KVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       131 ~~~~~~~~~~-~----~gk~~a~n~g~~~a-~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~  187 (283)
                       ++.++..+. .    .........++..- ..++++++.+|+.+ .++.++++++.+.+....
T Consensus        64 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d  126 (228)
T d1qwja_          64 -GAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYD  126 (228)
T ss_dssp             -TCEEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCS
T ss_pred             -CccccccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCcc
Confidence             355555432 2    23445555566443 57999999999877 799999999999765443

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.01  E-value=0.19  Score=40.20  Aligned_cols=105  Identities=12%  Similarity=0.107  Sum_probs=68.9

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHH---HcCCCcEEEEEcCCCCCHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR---KYTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ++|.+|. +.|.-.|+.+..          ..--||+|+..+...   +.++++..   .++ .+++++..+...|-+.|
T Consensus        26 llpi~gk-PiI~~~l~~l~~----------~Gi~ei~ii~~~~~~---~~i~~~~~~~~~~g-~~I~y~~q~~~~Gta~a   90 (292)
T d1fxoa_          26 LLPVYDK-PMIYYPLSTLML----------AGIREILIISTPQDT---PRFQQLLGDGSNWG-LDLQYAVQPSPDGLAQA   90 (292)
T ss_dssp             GSEETTE-ETTHHHHHHHHH----------TTCCEEEEEECTTTH---HHHHHHHTTSGGGT-CEEEEEECSSCCCGGGH
T ss_pred             cCEECCE-ehHHHHHHHHHH----------CCCCEEEEEeCcCCH---HHHHHHhccccccC-eEEEEccCCCCCcHHHH
Confidence            4566776 778888888776          234588777654332   23333322   222 36888888888999999


Q ss_pred             HHHHHHHcCCC-EEEEEeCCCCCChhhHHHHHHHHHHcCCccccc
Q 023346          148 IRKGMLHSRGE-LLLMLDADGATKVTDLEKLESQIHAVGRKEYNH  191 (283)
Q Consensus       148 ~n~g~~~a~~d-~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~  191 (283)
                      +..+.+....+ .++++.+|..... .+.++++.+.++.....++
T Consensus        91 i~~a~~~i~~~~~~lil~dD~~~~~-dl~~ll~~h~~~~~~~~i~  134 (292)
T d1fxoa_          91 FLIGESFIGNDLSALVLGDNLYYGH-DFHELLGSASQRQTGASVF  134 (292)
T ss_dssp             HHHTHHHHTTSEEEEEETTEEEECT-THHHHHHHHHTCCSSEEEE
T ss_pred             HHhhhhhcCCCceEEEEccccccCc-CHHHHHHHHHhCCCCcEEE
Confidence            99999888765 5566655554444 4888888887766544333

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=89.86  E-value=3  Score=31.28  Aligned_cols=106  Identities=16%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             EEEEEeecCCCCChH----------HHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEE
Q 023346           68 ISLIIPAFNEEHRLP----------GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL  137 (283)
Q Consensus        68 vsviip~~ne~~~l~----------~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~  137 (283)
                      +-+|||++.....++          ..++.+++++.     +...--+|+|+-|.  ....+.    ...+   +..++.
T Consensus         3 ~i~iIpAR~~SkRl~~Knl~~i~GkPli~~~i~~a~-----~~~~~d~Iiv~td~--~~i~~~----~~~~---~~~~~~   68 (245)
T d1h7ea_           3 AVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERAL-----QVAGVAEVWVATDD--PRVEQA----VQAF---GGKAIM   68 (245)
T ss_dssp             EEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHH-----TCTTCCEEEEEESC--HHHHHH----HHHT---TCEEEE
T ss_pred             EEEEEcCCCCCcCCCCccccccCCccHHHHHHHHHH-----hCCCCCeEEEeccc--ccchhh----hhhc---CceEEE
Confidence            556777766555444          13444444332     23334567776441  122222    3333   244444


Q ss_pred             c-CCCCCHHHHHHHHHHHcCCCEEEEEeCCCCC-ChhhHHHHHHHHHHcCCc
Q 023346          138 L-GRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       138 ~-~~~~gk~~a~n~g~~~a~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~~~  187 (283)
                      . +...+.......+++....|+++.+++|..+ +++.+..+++.+......
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~  120 (245)
T d1h7ea_          69 TRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPAL  120 (245)
T ss_dssp             CCSCCSSHHHHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTC
T ss_pred             ecCccccccHHHHHHHHhcCCCEEEEecchhhhcccccchhhhhcccccccc
Confidence            3 3345566677778888899999999999877 678899999988766544

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=88.64  E-value=3.6  Score=30.65  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=49.3

Q ss_pred             CceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc--CCCEEEEEeCCCCC-ChhhHHHHH
Q 023346          102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGAT-KVTDLEKLE  178 (283)
Q Consensus       102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a--~~d~i~~~D~D~~~-~~~~l~~~~  178 (283)
                      .--+|+||.+   ....++++++...+. ..+.++...  .....+.-.|++..  ..++|++.|+|..+ +++.+.+++
T Consensus        47 ~~~~Iivv~~---~~~~~~~~~~~~~~~-~~~~~~~gg--~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~  120 (226)
T d1w77a1          47 EVKEIVVVCD---PFFRDIFEEYEESID-VDLRFAIPG--KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVL  120 (226)
T ss_dssp             TEEEEEEECC---GGGTHHHHTTTTSCS-SEEEEECCC--SSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHH
T ss_pred             cccceeeccc---hhhhhhhhccccccc-ccccccccc--chhhhhhhhhHhhhccccccceecccccccccHHHhhhhh
Confidence            3456777654   223455555544433 244444321  12345555666664  46999999998766 888999999


Q ss_pred             HHHHHcCCc
Q 023346          179 SQIHAVGRK  187 (283)
Q Consensus       179 ~~~~~~~~~  187 (283)
                      .........
T Consensus       121 ~~~~~~~~~  129 (226)
T d1w77a1         121 KDGSAVGAA  129 (226)
T ss_dssp             HHHHHHSEE
T ss_pred             hhhhccCce
Confidence            988776443

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.3  Score=38.97  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             EEeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHH---HcCCCcEEEEEcCCCCCHHHH
Q 023346           71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR---KYTVDNVRIILLGRNHGKGEA  147 (283)
Q Consensus        71 iip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~~~~~~~~~~~gk~~a  147 (283)
                      ++|.+|. +.|...|+.+..          ..--||+||-..-   .....+++..   +++ .+++++..++..|-+.|
T Consensus        26 llpi~~k-p~i~~~l~~l~~----------~gi~~i~iv~~~~---~~~~~~~~~~~g~~~g-i~I~y~~Q~~plGta~A   90 (291)
T d1mc3a_          26 LLPIYDK-PMIYYPLSVLML----------AGIREILIITTPE---DKGYFQRLLGDGSEFG-IQLEYAEQPSPDGLAQA   90 (291)
T ss_dssp             GSEETTE-ETTHHHHHHHHH----------TTCCEEEEEECTT---THHHHHHHHTTSGGGT-CEEEEEECSSCCCSTHH
T ss_pred             ccEECCE-ehHHHHHHHHHH----------cCCCEEEEEeCcc---cHHHHHHHhCchHhhC-cEEEEEECCCCCchHHH
Confidence            3566665 677778877766          3345877775432   2334444432   222 36888888888999999


Q ss_pred             HHHHHHHcCCC-EEEEEeCCCCCChhhHHHHHHHHHHcCCc
Q 023346          148 IRKGMLHSRGE-LLLMLDADGATKVTDLEKLESQIHAVGRK  187 (283)
Q Consensus       148 ~n~g~~~a~~d-~i~~~D~D~~~~~~~l~~~~~~~~~~~~~  187 (283)
                      +..+-+....+ +++++.+|.....+ +.++++...+....
T Consensus        91 i~~a~~fi~~~~~~lvlgddi~~~~~-~~~~l~~~~~~~~~  130 (291)
T d1mc3a_          91 FIIGETFLNGEPSCLVLGDNIFFGQG-FSPKLRHVAARTEG  130 (291)
T ss_dssp             HHHTHHHHTTSCEEEEETTEEEECSS-CHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCeEEEECCCcccCcC-HHHHHHHHHhCcCC
Confidence            99998887765 55555555555554 55555555444433

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.93  E-value=1.5  Score=34.53  Aligned_cols=102  Identities=11%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             EeecCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCCHHHHHH
Q 023346           72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEAIR  149 (283)
Q Consensus        72 ip~~ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~gk~~a~n  149 (283)
                      +|..+ ...|..+++.+..          ..--+++||.+...   .+.++.+.....  ..++.++..+...|-+.|+.
T Consensus        29 l~i~~-kpii~~~l~~l~~----------~g~~~i~Iv~~~~~---~~~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~   94 (295)
T d1lvwa_          29 LPIYD-KPMIYYPLSVLML----------AGIRDILIISTPRD---LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFI   94 (295)
T ss_dssp             SEETT-EETTHHHHHHHHH----------TTCCEEEEEECTTT---HHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHH
T ss_pred             CeECC-EEHHHHHHHHHHH----------CCCCeEEEEeCccc---HHHHHHHhccchhcCCEEEEEECCCCCCHHHHHH
Confidence            45544 4778888877665          22346777755432   333333332211  13577788887889999998


Q ss_pred             HHHHHcCC-CEEEEEeCCCCCChhhHHHHHHHHHHcCCcc
Q 023346          150 KGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVGRKE  188 (283)
Q Consensus       150 ~g~~~a~~-d~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~  188 (283)
                      .+...... ++++++-+|.... ..+.++.....+.....
T Consensus        95 ~a~~~l~~~~~~li~~~d~~~~-~~~~~~~~~~~~~~~~~  133 (295)
T d1lvwa_          95 VGKDFIGDSKVALVLGDNVFYG-HRFSEILRRAASLEDGA  133 (295)
T ss_dssp             HTHHHHTTSCEEEEETTCCEEC-TTHHHHHHHHHTCCSSE
T ss_pred             HHHHHcCCCCEEEEeCCcceec-hhHHHHHHHHHhCCCCe
Confidence            88888765 5666665555444 45666666666654443

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=80.59  E-value=2  Score=31.89  Aligned_cols=89  Identities=12%  Similarity=0.127  Sum_probs=57.6

Q ss_pred             CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEeCCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHc
Q 023346           76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS  155 (283)
Q Consensus        76 ne~~~l~~~l~s~~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~gk~~a~n~g~~~a  155 (283)
                      +..+.+..+++++.+         ....-+|+|+.+.     .+..+.+    . .++.++...  .....+.-.|++..
T Consensus        27 ~gkpii~~~l~~~~~---------~~~~~~Ivvv~~~-----~~~~~~~----~-~~~~~v~Gg--~~r~~Sv~~gl~~~   85 (205)
T d1w55a1          27 GNDPLWLYATKNLSS---------FYPFKKIVVTSSN-----ITYMKKF----T-KNYEFIEGG--DTRAESLKKALELI   85 (205)
T ss_dssp             BTEEHHHHHHHHHHT---------TSCCSCEEEEESC-----HHHHHTT----C-SSSEEEECC--SSHHHHHHHHHTTC
T ss_pred             CCEEHHHHHHHHHHh---------hcccccccccccc-----ccccccc----c-ccccccccc--cchhhhhhhhhhhh
Confidence            555666667777654         2223466666432     2222222    1 255666532  23566777899999


Q ss_pred             CCCEEEEEeCCCCC-ChhhHHHHHHHHHHcC
Q 023346          156 RGELLLMLDADGAT-KVTDLEKLESQIHAVG  185 (283)
Q Consensus       156 ~~d~i~~~D~D~~~-~~~~l~~~~~~~~~~~  185 (283)
                      ..++|++.|+|..+ +++.++++++.+.++.
T Consensus        86 ~~~~VlIhd~~rP~i~~~~i~~li~~~~~~~  116 (205)
T d1w55a1          86 DSEFVMVSDVARVLVSKNLFDRLIENLDKAD  116 (205)
T ss_dssp             CSSEEEEEETTCTTCCHHHHHHHHTTGGGCS
T ss_pred             hhcceeeeccCcccCcHHHHHHHHhhhhccc
Confidence            99999999999755 8899999998876543